Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63503.t1 | AES71012.1 | 96.4 | 361 | 13 | 0 | 1 | 361 | 1 | 361 | 8.10E-190 | 672.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63503.t1 | O22287 | 90.0 | 361 | 36 | 0 | 1 | 361 | 1 | 361 | 1.8e-177 | 623.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63503.t1 | G7J9Y8 | 96.4 | 361 | 13 | 0 | 1 | 361 | 1 | 361 | 5.8e-190 | 672.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63503 | MS.gene20834 | PPI |
| MS.gene63503 | MS.gene022258 | PPI |
| MS.gene63503 | MS.gene20783 | PPI |
| MS.gene63503 | MS.gene25915 | PPI |
| MS.gene63503 | MS.gene074391 | PPI |
| MS.gene63503 | MS.gene70588 | PPI |
| MS.gene63503 | MS.gene07262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63503.t1 | MTR_3g069070 | 98.892 | 361 | 4 | 0 | 1 | 361 | 1 | 361 | 0.0 | 727 |
| MS.gene63503.t1 | MTR_5g080770 | 92.798 | 361 | 26 | 0 | 1 | 361 | 1 | 361 | 0.0 | 684 |
| MS.gene63503.t1 | MTR_3g069070 | 98.675 | 302 | 4 | 0 | 60 | 361 | 1 | 302 | 0.0 | 609 |
| MS.gene63503.t1 | MTR_4g133690 | 72.576 | 361 | 42 | 3 | 1 | 361 | 1 | 304 | 1.35e-180 | 503 |
| MS.gene63503.t1 | MTR_3g078570 | 32.000 | 400 | 224 | 7 | 3 | 354 | 10 | 409 | 4.37e-63 | 207 |
| MS.gene63503.t1 | MTR_6g008840 | 32.187 | 407 | 227 | 8 | 3 | 361 | 9 | 414 | 5.62e-62 | 204 |
| MS.gene63503.t1 | MTR_3g078570 | 31.476 | 359 | 207 | 6 | 3 | 322 | 10 | 368 | 2.83e-56 | 188 |
| MS.gene63503.t1 | MTR_4g071670 | 30.603 | 232 | 109 | 6 | 168 | 361 | 3 | 220 | 1.02e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63503.t1 | AT2G39770 | 90.582 | 361 | 34 | 0 | 1 | 361 | 1 | 361 | 0.0 | 677 |
| MS.gene63503.t1 | AT2G39770 | 90.582 | 361 | 34 | 0 | 1 | 361 | 1 | 361 | 0.0 | 677 |
| MS.gene63503.t1 | AT2G39770 | 90.582 | 361 | 34 | 0 | 1 | 361 | 1 | 361 | 0.0 | 677 |
| MS.gene63503.t1 | AT3G55590 | 83.516 | 364 | 57 | 1 | 1 | 361 | 1 | 364 | 0.0 | 626 |
| MS.gene63503.t1 | AT4G30570 | 76.596 | 329 | 76 | 1 | 21 | 348 | 1 | 329 | 0.0 | 520 |
| MS.gene63503.t1 | AT2G04650 | 32.316 | 393 | 225 | 7 | 3 | 354 | 8 | 400 | 1.30e-64 | 211 |
| MS.gene63503.t1 | AT1G74910 | 30.788 | 406 | 233 | 8 | 3 | 361 | 11 | 415 | 2.57e-64 | 210 |
| MS.gene63503.t1 | AT1G74910 | 30.788 | 406 | 233 | 8 | 3 | 361 | 11 | 415 | 2.57e-64 | 210 |
| MS.gene63503.t1 | AT2G04650 | 31.948 | 385 | 223 | 6 | 9 | 354 | 4 | 388 | 4.59e-64 | 209 |
| MS.gene63503.t1 | AT1G74910 | 30.137 | 365 | 217 | 6 | 3 | 329 | 11 | 375 | 1.42e-57 | 192 |
Find 109 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCAGTGGCCCTCACATTT+TGG | 0.174139 | 3.1:+56595391 | MS.gene63503:CDS |
| GAGACATCCCTCGCCAATTT+TGG | 0.195747 | 3.1:-56595438 | None:intergenic |
| CAATGGTTCTGCCTGGATTC+TGG | 0.230745 | 3.1:+56595285 | MS.gene63503:CDS |
| TTGATTCTGGTTGGAGGGTT+TGG | 0.231295 | 3.1:+56593561 | MS.gene63503:CDS |
| CACAATGAAGGCATTGATTC+TGG | 0.244864 | 3.1:+56593548 | None:intergenic |
| CCTATTGAACCCCTCAGTTT+TGG | 0.269147 | 3.1:+56595187 | MS.gene63503:CDS |
| AATTACCTTTGTCACCATTA+TGG | 0.298623 | 3.1:-56594973 | None:intergenic |
| GTGCATGAGACAGCCAAAAT+TGG | 0.360392 | 3.1:+56595425 | MS.gene63503:CDS |
| GTTGACGAGCCATCGAAATA+TGG | 0.375253 | 3.1:+56595071 | MS.gene63503:CDS |
| TTTGCAGATAGAGGCTCTTA+AGG | 0.376635 | 3.1:+56594576 | MS.gene63503:intron |
| CTTCTCCTCCATGAGATTTG+TGG | 0.394590 | 3.1:-56594947 | None:intergenic |
| CAAAACAAGCATTCTGAATC+CGG | 0.395255 | 3.1:+56595706 | MS.gene63503:CDS |
| GAAATATGGTGTAGTTGTTA+TGG | 0.396468 | 3.1:+56595085 | MS.gene63503:CDS |
| CCAAAACTGAGGGGTTCAAT+AGG | 0.416025 | 3.1:-56595187 | None:intergenic |
| CTCTCAAGAAACTGAACCAT+TGG | 0.424571 | 3.1:+56594806 | MS.gene63503:CDS |
| GCATTCAACTGTTGGTCAAT+GGG | 0.425597 | 3.1:+56595589 | MS.gene63503:CDS |
| GGCATTCAACTGTTGGTCAA+TGG | 0.426345 | 3.1:+56595588 | MS.gene63503:CDS |
| AGCAAAATCAACAAGAGGCT+TGG | 0.428162 | 3.1:-56593616 | None:intergenic |
| ATTGGACCTGATGTTGCAAT+TGG | 0.435688 | 3.1:+56595461 | MS.gene63503:CDS |
| CAAGCCCATGATTCTGCATC+AGG | 0.436008 | 3.1:+56593641 | MS.gene63503:CDS |
| ATTGGGGACTGCAGGTCCCT+TGG | 0.442280 | 3.1:+56594824 | MS.gene63503:CDS |
| CCCCAAAATGTGAGGGCCAC+TGG | 0.444498 | 3.1:-56595393 | None:intergenic |
| GAATTTCTTGAAGGACTTTG+AGG | 0.444711 | 3.1:+56594758 | MS.gene63503:CDS |
| CCTGATGTTGCAATTGGTCC+TGG | 0.445714 | 3.1:+56595467 | MS.gene63503:CDS |
| CAGCCAAGGGACTATATAAC+AGG | 0.445775 | 3.1:+56595320 | MS.gene63503:CDS |
| GCCAGAGATAAGCTGATTGA+TGG | 0.448757 | 3.1:+56594852 | MS.gene63503:CDS |
| GTGAGGGCCACTGGCCAACT+TGG | 0.453022 | 3.1:-56595384 | None:intergenic |
| GTTGGCAACAAAATCAATGC+TGG | 0.457593 | 3.1:+56595158 | MS.gene63503:CDS |
| GCAAAATCAACAAGAGGCTT+GGG | 0.462216 | 3.1:-56593615 | None:intergenic |
| GTACTATTGAGTCAGGTGTC+AGG | 0.462789 | 3.1:+56595492 | MS.gene63503:CDS |
| CCTTACCTGATGCAGAATCA+TGG | 0.467053 | 3.1:-56593646 | None:intergenic |
| TCTCAAGAAACTGAACCATT+GGG | 0.467960 | 3.1:+56594807 | MS.gene63503:CDS |
| TTTGTTGCCAACAAACAACT+TGG | 0.477074 | 3.1:-56595147 | None:intergenic |
| ATTGGCGAGGGATGTCTCAT+TGG | 0.477910 | 3.1:+56595443 | MS.gene63503:CDS |
| GGTGATGTTGAATTTCTTGA+AGG | 0.486495 | 3.1:+56594749 | MS.gene63503:intron |
| GCCATCAATCAGCTTATCTC+TGG | 0.487352 | 3.1:-56594853 | None:intergenic |
| GAGAAACCCAAGTTGTTTGT+TGG | 0.488405 | 3.1:+56595140 | MS.gene63503:CDS |
| CCTGGCTGTACTATTGAGTC+AGG | 0.491456 | 3.1:+56595485 | MS.gene63503:CDS |
| TTGGGAACGCTGAGTGTCAA+TGG | 0.493354 | 3.1:-56593597 | None:intergenic |
| ATCGGATGGCATTCAACTGT+TGG | 0.494755 | 3.1:+56595581 | MS.gene63503:CDS |
| GCACTGTAATGCGAGGAGTT+CGG | 0.503914 | 3.1:+56595525 | MS.gene63503:CDS |
| GTGGAGAATATGACTATCCT+TGG | 0.505671 | 3.1:+56595617 | MS.gene63503:CDS |
| ACCCACTTCTATTGAGAAAG+AGG | 0.506248 | 3.1:+56595226 | MS.gene63503:CDS |
| TGGAGGAGAAGCTTCCATAA+TGG | 0.508219 | 3.1:+56594959 | MS.gene63503:CDS |
| TGGTTGGAGGGTTTGGAACA+AGG | 0.517924 | 3.1:+56593568 | MS.gene63503:CDS |
| GAGGGTTTGGAACAAGGTTG+AGG | 0.519056 | 3.1:+56593574 | MS.gene63503:CDS |
| ATGAAGGCATTGATTCTGGT+TGG | 0.520723 | 3.1:+56593552 | MS.gene63503:CDS |
| GAAGAAGACTTCTTCCAAGT+TGG | 0.520882 | 3.1:+56595370 | MS.gene63503:CDS |
| ATAGAATTCCACAAATCTCA+TGG | 0.522477 | 3.1:+56594939 | MS.gene63503:CDS |
| CTATATGCAATGGTTCTGCC+TGG | 0.525369 | 3.1:+56595278 | MS.gene63503:CDS |
| AACAGGTCTGAGACTCTACC+TGG | 0.527965 | 3.1:+56595337 | MS.gene63503:CDS |
| ATGCCATCCGATGATGCTGC+TGG | 0.528046 | 3.1:-56595570 | None:intergenic |
| CCAGGACCAATTGCAACATC+AGG | 0.528530 | 3.1:-56595467 | None:intergenic |
| AACAAATTTCTCAACCTGCC+CGG | 0.528886 | 3.1:-56595117 | None:intergenic |
| CCAACGTCCATCCAGAATCC+AGG | 0.531453 | 3.1:-56595296 | None:intergenic |
| TAGCCTCACATGACTATCTC+CGG | 0.532916 | 3.1:-56595725 | None:intergenic |
| TGCATATCCAGCAGCATCAT+CGG | 0.533271 | 3.1:+56595563 | MS.gene63503:CDS |
| ACTGAACCATTGGGGACTGC+AGG | 0.534135 | 3.1:+56594816 | MS.gene63503:CDS |
| AGACCTGTTATATAGTCCCT+TGG | 0.537146 | 3.1:-56595323 | None:intergenic |
| CTTATCTCTGGCAAGAGCCA+AGG | 0.538273 | 3.1:-56594841 | None:intergenic |
| GATAAGCTGATTGATGGCTC+TGG | 0.538569 | 3.1:+56594858 | MS.gene63503:CDS |
| TGGAGTTACTGAAGTGGTGC+TGG | 0.539605 | 3.1:+56594603 | MS.gene63503:CDS |
| AATTCTATCATTTCTATGAG+TGG | 0.542917 | 3.1:-56594924 | None:intergenic |
| CACCTCTTTCTCAATAGAAG+TGG | 0.543517 | 3.1:-56595228 | None:intergenic |
| AGGCATTGATTCTGGTTGGA+GGG | 0.546975 | 3.1:+56593556 | MS.gene63503:CDS |
| AAGGCATTGATTCTGGTTGG+AGG | 0.548820 | 3.1:+56593555 | MS.gene63503:CDS |
| TTGGCAACAAAATCAATGCT+GGG | 0.556088 | 3.1:+56595159 | MS.gene63503:CDS |
| ATAGAGGCTCTTAAGGACAT+TGG | 0.566425 | 3.1:+56594583 | MS.gene63503:CDS |
| GGATGGACGTTGGACAGCCA+AGG | 0.566955 | 3.1:+56595306 | MS.gene63503:CDS |
| TCTTCTTCCTGAGTGAGTCC+AGG | 0.570610 | 3.1:-56595355 | None:intergenic |
| TTATCTCTGGCAAGAGCCAA+GGG | 0.571035 | 3.1:-56594840 | None:intergenic |
| TCAATATGATCCAAAACTGA+GGG | 0.571408 | 3.1:-56595197 | None:intergenic |
| GACTCTACCTGGACTCACTC+AGG | 0.571470 | 3.1:+56595348 | MS.gene63503:CDS |
| GGTTCTGCCTGGATTCTGGA+TGG | 0.571576 | 3.1:+56595289 | MS.gene63503:CDS |
| CTTACCTGATGCAGAATCAT+GGG | 0.572676 | 3.1:-56593645 | None:intergenic |
| ACCTCTTTCTCAATAGAAGT+GGG | 0.579545 | 3.1:-56595227 | None:intergenic |
| TATGGAAGAGACTACCGGGC+AGG | 0.580495 | 3.1:+56595103 | MS.gene63503:CDS |
| TTGTTGCCAACAAACAACTT+GGG | 0.582555 | 3.1:-56595146 | None:intergenic |
| ATCACATTCCCCAAAATGTG+AGG | 0.586656 | 3.1:-56595401 | None:intergenic |
| TGTTGGTCAATGGGCTCGTG+TGG | 0.587690 | 3.1:+56595598 | MS.gene63503:CDS |
| AGCTTCCATAATGGTGACAA+AGG | 0.594491 | 3.1:+56594968 | MS.gene63503:CDS |
| CCTGGATTCTGGATGGACGT+TGG | 0.598867 | 3.1:+56595296 | MS.gene63503:CDS |
| TTCAATATGATCCAAAACTG+AGG | 0.607441 | 3.1:-56595198 | None:intergenic |
| AAGGGACCTGCAGTCCCCAA+TGG | 0.610136 | 3.1:-56594822 | None:intergenic |
| ACTTCTTCCAAGTTGGCCAG+TGG | 0.612092 | 3.1:+56595377 | MS.gene63503:CDS |
| GATGGACGTTGGACAGCCAA+GGG | 0.612597 | 3.1:+56595307 | MS.gene63503:CDS |
| GTTGTTATGGAAGAGACTAC+CGG | 0.612863 | 3.1:+56595098 | MS.gene63503:CDS |
| ACAACTACACCATATTTCGA+TGG | 0.616973 | 3.1:-56595080 | None:intergenic |
| TTGTTAGCAAAATCAACAAG+AGG | 0.621493 | 3.1:-56593621 | None:intergenic |
| TGAGACAGCCAAAATTGGCG+AGG | 0.624566 | 3.1:+56595430 | MS.gene63503:CDS |
| GCAGAATCCATACCTCTGGT+TGG | 0.627533 | 3.1:-56594636 | None:intergenic |
| CCTGACTCAATAGTACAGCC+AGG | 0.628206 | 3.1:-56595485 | None:intergenic |
| CTCAAGAAACTGAACCATTG+GGG | 0.633701 | 3.1:+56594808 | MS.gene63503:CDS |
| TTGTTATGGAAGAGACTACC+GGG | 0.634181 | 3.1:+56595099 | MS.gene63503:CDS |
| GAGACAGCCAAAATTGGCGA+GGG | 0.639601 | 3.1:+56595431 | MS.gene63503:CDS |
| GGACATTGGAGTTACTGAAG+TGG | 0.642199 | 3.1:+56594597 | MS.gene63503:CDS |
| TCACATTCCCCAAAATGTGA+GGG | 0.643108 | 3.1:-56595400 | None:intergenic |
| TATCCAGCAGCATCATCGGA+TGG | 0.645268 | 3.1:+56595567 | MS.gene63503:CDS |
| TCTGATGAAGTTTACAGCAA+TGG | 0.647756 | 3.1:+56595656 | MS.gene63503:CDS |
| ACACATGGACATCTTCTCCA+AGG | 0.652619 | 3.1:-56595634 | None:intergenic |
| TGGTGTGGTGTTGCCCCACA+AGG | 0.652912 | 3.1:+56595679 | MS.gene63503:CDS |
| TCAAGCTGCACTGTAATGCG+AGG | 0.663951 | 3.1:+56595518 | MS.gene63503:CDS |
| GATGAAGTTTACAGCAATGG+TGG | 0.678324 | 3.1:+56595659 | MS.gene63503:CDS |
| GGCTATCAATTACCAACCAG+AGG | 0.681698 | 3.1:+56594624 | MS.gene63503:CDS |
| AGTTTACAGCAATGGTGGTG+TGG | 0.691433 | 3.1:+56595664 | MS.gene63503:CDS |
| TGTAAACTTCATCAGACACA+TGG | 0.708800 | 3.1:-56595649 | None:intergenic |
| AATCCGGAGATAGTCATGTG+AGG | 0.718966 | 3.1:+56595722 | MS.gene63503:CDS |
| CAATATGATCCAAAACTGAG+GGG | 0.719526 | 3.1:-56595196 | None:intergenic |
| GAATTCCACAAATCTCATGG+AGG | 0.748000 | 3.1:+56594942 | MS.gene63503:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATACTTTGACATAATAAAA+TGG | - | chr3.1:56593975-56593994 | None:intergenic | 15.0% |
| !! | TATCTGCAAAACAAATTAAA+AGG | - | chr3.1:56594566-56594585 | None:intergenic | 20.0% |
| !!! | AAATCAACTTGTTGAAATTT+GGG | - | chr3.1:56594227-56594246 | None:intergenic | 20.0% |
| !!! | TAAATCAACTTGTTGAAATT+TGG | - | chr3.1:56594228-56594247 | None:intergenic | 20.0% |
| ! | AAACAAAAAGCTATATGCAA+TGG | + | chr3.1:56595268-56595287 | MS.gene63503:CDS | 25.0% |
| ! | AATTCAAGAAACTCAAGAAA+CGG | - | chr3.1:56593683-56593702 | None:intergenic | 25.0% |
| ! | AATTCTATCATTTCTATGAG+TGG | - | chr3.1:56594927-56594946 | None:intergenic | 25.0% |
| ! | AGGGAGAAAATATAACATAT+AGG | - | chr3.1:56593760-56593779 | None:intergenic | 25.0% |
| ! | ATTAAAAGGAAAAACACATG+AGG | - | chr3.1:56594552-56594571 | None:intergenic | 25.0% |
| !!! | AATCAACTTGTTGAAATTTG+GGG | - | chr3.1:56594226-56594245 | None:intergenic | 25.0% |
| !!! | ACATTTTTTCATATCCAACA+AGG | + | chr3.1:56593894-56593913 | MS.gene63503:intron | 25.0% |
| !!! | TTAATTTGTTTTGCAGATAG+AGG | + | chr3.1:56594567-56594586 | MS.gene63503:intron | 25.0% |
| AATTACCTTTGTCACCATTA+TGG | - | chr3.1:56594976-56594995 | None:intergenic | 30.0% | |
| ATAGAATTCCACAAATCTCA+TGG | + | chr3.1:56594939-56594958 | MS.gene63503:CDS | 30.0% | |
| ATGGTGACAAAGGTAATTAA+CGG | + | chr3.1:56594978-56594997 | MS.gene63503:intron | 30.0% | |
| ATTCAAGAAACTCAAGAAAC+GGG | - | chr3.1:56593682-56593701 | None:intergenic | 30.0% | |
| CTTGAGAAGAGTTTATAAAG+AGG | + | chr3.1:56594155-56594174 | MS.gene63503:intron | 30.0% | |
| GAAATATGGTGTAGTTGTTA+TGG | + | chr3.1:56595085-56595104 | MS.gene63503:CDS | 30.0% | |
| GTTGTAGGTTAATATAGTGT+GGG | + | chr3.1:56594285-56594304 | MS.gene63503:intron | 30.0% | |
| TCAATATGATCCAAAACTGA+GGG | - | chr3.1:56595200-56595219 | None:intergenic | 30.0% | |
| TGGATATGAAAAAATGTTGC+AGG | - | chr3.1:56593891-56593910 | None:intergenic | 30.0% | |
| TGTTGTAGGTTAATATAGTG+TGG | + | chr3.1:56594284-56594303 | MS.gene63503:intron | 30.0% | |
| TTCAATATGATCCAAAACTG+AGG | - | chr3.1:56595201-56595220 | None:intergenic | 30.0% | |
| TTGTTAGCAAAATCAACAAG+AGG | - | chr3.1:56593624-56593643 | None:intergenic | 30.0% | |
| ! | ATTTTCTGAATGAGTTGTGT+TGG | + | chr3.1:56593996-56594015 | MS.gene63503:intron | 30.0% |
| !! | ACAATTTTTCGCACTTTTTG+AGG | - | chr3.1:56594348-56594367 | None:intergenic | 30.0% |
| !! | TTTTTGTTTGCTGCAATCTT+TGG | - | chr3.1:56595257-56595276 | None:intergenic | 30.0% |
| AAAAGGAAAAACACATGAGG+TGG | - | chr3.1:56594549-56594568 | None:intergenic | 35.0% | |
| AATCCAGCAAGATTCAATGT+TGG | - | chr3.1:56593926-56593945 | None:intergenic | 35.0% | |
| AATTCAACATCACCTACAAG+AGG | - | chr3.1:56594743-56594762 | None:intergenic | 35.0% | |
| ACAACTACACCATATTTCGA+TGG | - | chr3.1:56595083-56595102 | None:intergenic | 35.0% | |
| ACCTCTTTCTCAATAGAAGT+GGG | - | chr3.1:56595230-56595249 | None:intergenic | 35.0% | |
| CAAAACAAGCATTCTGAATC+CGG | + | chr3.1:56595706-56595725 | MS.gene63503:CDS | 35.0% | |
| CAATATGATCCAAAACTGAG+GGG | - | chr3.1:56595199-56595218 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr3.1:56594202-56594221 | None:intergenic | 35.0% | |
| GAATTTCTTGAAGGACTTTG+AGG | + | chr3.1:56594758-56594777 | MS.gene63503:CDS | 35.0% | |
| GAGAAGAGTTTATAAAGAGG+AGG | + | chr3.1:56594158-56594177 | MS.gene63503:intron | 35.0% | |
| GCAAGATATTTCAGCAGAAT+GGG | + | chr3.1:56593834-56593853 | MS.gene63503:intron | 35.0% | |
| GGTGATGTTGAATTTCTTGA+AGG | + | chr3.1:56594749-56594768 | MS.gene63503:intron | 35.0% | |
| TCGCTGTTGAGAACAAAAAA+TGG | - | chr3.1:56594888-56594907 | None:intergenic | 35.0% | |
| TCTCAAGAAACTGAACCATT+GGG | + | chr3.1:56594807-56594826 | MS.gene63503:CDS | 35.0% | |
| TCTGATGAAGTTTACAGCAA+TGG | + | chr3.1:56595656-56595675 | MS.gene63503:CDS | 35.0% | |
| TGCAAGATATTTCAGCAGAA+TGG | + | chr3.1:56593833-56593852 | MS.gene63503:intron | 35.0% | |
| TGTAAACTTCATCAGACACA+TGG | - | chr3.1:56595652-56595671 | None:intergenic | 35.0% | |
| TTCAAGAAACTCAAGAAACG+GGG | - | chr3.1:56593681-56593700 | None:intergenic | 35.0% | |
| TTCATTGAGAATGACTGACA+TGG | - | chr3.1:56594676-56594695 | None:intergenic | 35.0% | |
| TTGGCAACAAAATCAATGCT+GGG | + | chr3.1:56595159-56595178 | MS.gene63503:CDS | 35.0% | |
| TTGTTGCCAACAAACAACTT+GGG | - | chr3.1:56595149-56595168 | None:intergenic | 35.0% | |
| TTTGTTGCCAACAAACAACT+TGG | - | chr3.1:56595150-56595169 | None:intergenic | 35.0% | |
| ! | TTACGATTGCTATGCTACTT+GGG | + | chr3.1:56593704-56593723 | MS.gene63503:intron | 35.0% |
| !! | TTTCGCACTTTTTGAGGAAA+GGG | - | chr3.1:56594342-56594361 | None:intergenic | 35.0% |
| !! | TTTTCGCACTTTTTGAGGAA+AGG | - | chr3.1:56594343-56594362 | None:intergenic | 35.0% |
| !!! | CTTGTTTTGATTTCCTTGTG+GGG | - | chr3.1:56595695-56595714 | None:intergenic | 35.0% |
| !!! | GCTTGTTTTGATTTCCTTGT+GGG | - | chr3.1:56595696-56595715 | None:intergenic | 35.0% |
| !!! | TGCTTGTTTTGATTTCCTTG+TGG | - | chr3.1:56595697-56595716 | None:intergenic | 35.0% |
| AACAAATTTCTCAACCTGCC+CGG | - | chr3.1:56595120-56595139 | None:intergenic | 40.0% | |
| ACCCACTTCTATTGAGAAAG+AGG | + | chr3.1:56595226-56595245 | MS.gene63503:CDS | 40.0% | |
| AGACCTGTTATATAGTCCCT+TGG | - | chr3.1:56595326-56595345 | None:intergenic | 40.0% | |
| AGCAAAATCAACAAGAGGCT+TGG | - | chr3.1:56593619-56593638 | None:intergenic | 40.0% | |
| AGCTTCCATAATGGTGACAA+AGG | + | chr3.1:56594968-56594987 | MS.gene63503:CDS | 40.0% | |
| ATAGAGGCTCTTAAGGACAT+TGG | + | chr3.1:56594583-56594602 | MS.gene63503:CDS | 40.0% | |
| ATCACATTCCCCAAAATGTG+AGG | - | chr3.1:56595404-56595423 | None:intergenic | 40.0% | |
| ATCTACTCACAGACAGCAAA+GGG | - | chr3.1:56594456-56594475 | None:intergenic | 40.0% | |
| ATTGGACCTGATGTTGCAAT+TGG | + | chr3.1:56595461-56595480 | MS.gene63503:CDS | 40.0% | |
| CAACCAACATTGAATCTTGC+TGG | + | chr3.1:56593920-56593939 | MS.gene63503:intron | 40.0% | |
| CACCTCTTTCTCAATAGAAG+TGG | - | chr3.1:56595231-56595250 | None:intergenic | 40.0% | |
| CTCAAGAAACTGAACCATTG+GGG | + | chr3.1:56594808-56594827 | MS.gene63503:CDS | 40.0% | |
| CTCTCAAGAAACTGAACCAT+TGG | + | chr3.1:56594806-56594825 | MS.gene63503:CDS | 40.0% | |
| CTTACCTGATGCAGAATCAT+GGG | - | chr3.1:56593648-56593667 | None:intergenic | 40.0% | |
| CTTACGATTGCTATGCTACT+TGG | + | chr3.1:56593703-56593722 | MS.gene63503:intron | 40.0% | |
| GAAGAAGACTTCTTCCAAGT+TGG | + | chr3.1:56595370-56595389 | MS.gene63503:CDS | 40.0% | |
| GAATTCCACAAATCTCATGG+AGG | + | chr3.1:56594942-56594961 | MS.gene63503:CDS | 40.0% | |
| GAGAAACCCAAGTTGTTTGT+TGG | + | chr3.1:56595140-56595159 | MS.gene63503:CDS | 40.0% | |
| GAGTACTATCTATCCGATGT+GGG | - | chr3.1:56594136-56594155 | None:intergenic | 40.0% | |
| GATGAAGTTTACAGCAATGG+TGG | + | chr3.1:56595659-56595678 | MS.gene63503:CDS | 40.0% | |
| GCAAAATCAACAAGAGGCTT+GGG | - | chr3.1:56593618-56593637 | None:intergenic | 40.0% | |
| GCATTCAACTGTTGGTCAAT+GGG | + | chr3.1:56595589-56595608 | MS.gene63503:CDS | 40.0% | |
| GTGGAGAATATGACTATCCT+TGG | + | chr3.1:56595617-56595636 | MS.gene63503:CDS | 40.0% | |
| GTTGGCAACAAAATCAATGC+TGG | + | chr3.1:56595158-56595177 | MS.gene63503:CDS | 40.0% | |
| GTTGTTATGGAAGAGACTAC+CGG | + | chr3.1:56595098-56595117 | MS.gene63503:CDS | 40.0% | |
| TCAATTACCAACCAGAGGTA+TGG | + | chr3.1:56594629-56594648 | MS.gene63503:intron | 40.0% | |
| TCACATTCCCCAAAATGTGA+GGG | - | chr3.1:56595403-56595422 | None:intergenic | 40.0% | |
| TGACATGGTTAGGAAAAGAG+AGG | - | chr3.1:56594661-56594680 | None:intergenic | 40.0% | |
| TGAGAATGACTGACATGGTT+AGG | - | chr3.1:56594671-56594690 | None:intergenic | 40.0% | |
| TGGAAATTCCGCCTTAATTG+CGG | + | chr3.1:56594016-56594035 | MS.gene63503:intron | 40.0% | |
| TTGTGAACACTTCCTCTTGT+AGG | + | chr3.1:56594728-56594747 | MS.gene63503:intron | 40.0% | |
| TTGTTATGGAAGAGACTACC+GGG | + | chr3.1:56595099-56595118 | MS.gene63503:CDS | 40.0% | |
| TTTGCAGATAGAGGCTCTTA+AGG | + | chr3.1:56594576-56594595 | MS.gene63503:intron | 40.0% | |
| ! | AACCTACAACACGTTGATGA+TGG | - | chr3.1:56594275-56594294 | None:intergenic | 40.0% |
| ! | AATGTTGGTTGTTGCCTTGT+TGG | - | chr3.1:56593911-56593930 | None:intergenic | 40.0% |
| ! | AGAGTACTATCTATCCGATG+TGG | - | chr3.1:56594137-56594156 | None:intergenic | 40.0% |
| ! | CTGACTGACTCATGATATCA+GGG | - | chr3.1:56593779-56593798 | None:intergenic | 40.0% |
| ! | TCTGACTGACTCATGATATC+AGG | - | chr3.1:56593780-56593799 | None:intergenic | 40.0% |
| ! | TGTTTTACATCTGCTTGTGC+AGG | + | chr3.1:56595049-56595068 | MS.gene63503:intron | 40.0% |
| !! | ATGAAGGCATTGATTCTGGT+TGG | + | chr3.1:56593552-56593571 | MS.gene63503:CDS | 40.0% |
| !! | CTTCATTGTGTTGGCTTTGA+GGG | + | chr3.1:56594098-56594117 | MS.gene63503:intron | 40.0% |
| !! | TTCATTGTGTTGGCTTTGAG+GGG | + | chr3.1:56594099-56594118 | MS.gene63503:intron | 40.0% |
| !! | TTCGCACTTTTTGAGGAAAG+GGG | - | chr3.1:56594341-56594360 | None:intergenic | 40.0% |
| ACACATGGACATCTTCTCCA+AGG | - | chr3.1:56595637-56595656 | None:intergenic | 45.0% | |
| AGGAAAAACACATGAGGTGG+TGG | - | chr3.1:56594546-56594565 | None:intergenic | 45.0% | |
| AGGTCGCAATTTAGACGACT+AGG | - | chr3.1:56594048-56594067 | None:intergenic | 45.0% | |
| ATCGGATGGCATTCAACTGT+TGG | + | chr3.1:56595581-56595600 | MS.gene63503:CDS | 45.0% | |
| CAGCCAAGGGACTATATAAC+AGG | + | chr3.1:56595320-56595339 | MS.gene63503:CDS | 45.0% | |
| CATCTACTCACAGACAGCAA+AGG | - | chr3.1:56594457-56594476 | None:intergenic | 45.0% | |
| CCAAAACTGAGGGGTTCAAT+AGG | - | chr3.1:56595190-56595209 | None:intergenic | 45.0% | |
| CCATGATTCTGCATCAGGTA+AGG | + | chr3.1:56593646-56593665 | MS.gene63503:intron | 45.0% | |
| CCTCAAAGCCAACACAATGA+AGG | - | chr3.1:56594100-56594119 | None:intergenic | 45.0% | |
| CCTTACCTGATGCAGAATCA+TGG | - | chr3.1:56593649-56593668 | None:intergenic | 45.0% | |
| CTCCAACACCTTCATTGTGT+TGG | + | chr3.1:56594089-56594108 | MS.gene63503:intron | 45.0% | |
| CTCCATCATCAACGTGTTGT+AGG | + | chr3.1:56594270-56594289 | MS.gene63503:intron | 45.0% | |
| CTGCAATGAAGGCTAACCAA+AGG | - | chr3.1:56594068-56594087 | None:intergenic | 45.0% | |
| CTTCTCCTCCATGAGATTTG+TGG | - | chr3.1:56594950-56594969 | None:intergenic | 45.0% | |
| GCCAGAGATAAGCTGATTGA+TGG | + | chr3.1:56594852-56594871 | MS.gene63503:CDS | 45.0% | |
| GCCATCAATCAGCTTATCTC+TGG | - | chr3.1:56594856-56594875 | None:intergenic | 45.0% | |
| GCTGGATTCTGTCAAAACTC+TGG | + | chr3.1:56593938-56593957 | MS.gene63503:intron | 45.0% | |
| GGACATTGGAGTTACTGAAG+TGG | + | chr3.1:56594597-56594616 | MS.gene63503:CDS | 45.0% | |
| GGCATTCAACTGTTGGTCAA+TGG | + | chr3.1:56595588-56595607 | MS.gene63503:CDS | 45.0% | |
| GGCTATCAATTACCAACCAG+AGG | + | chr3.1:56594624-56594643 | MS.gene63503:CDS | 45.0% | |
| GGTCGCAATTTAGACGACTA+GGG | - | chr3.1:56594047-56594066 | None:intergenic | 45.0% | |
| GTACTATTGAGTCAGGTGTC+AGG | + | chr3.1:56595492-56595511 | MS.gene63503:CDS | 45.0% | |
| GTCGCAATTTAGACGACTAG+GGG | - | chr3.1:56594046-56594065 | None:intergenic | 45.0% | |
| GTCGTCTAAATTGCGACCTT+TGG | + | chr3.1:56594049-56594068 | MS.gene63503:intron | 45.0% | |
| GTGCATGAGACAGCCAAAAT+TGG | + | chr3.1:56595425-56595444 | MS.gene63503:CDS | 45.0% | |
| GTTGACGAGCCATCGAAATA+TGG | + | chr3.1:56595071-56595090 | MS.gene63503:CDS | 45.0% | |
| TGCATATCCAGCAGCATCAT+CGG | + | chr3.1:56595563-56595582 | MS.gene63503:CDS | 45.0% | |
| TGGAGGAGAAGCTTCCATAA+TGG | + | chr3.1:56594959-56594978 | MS.gene63503:CDS | 45.0% | |
| TTATCTCTGGCAAGAGCCAA+GGG | - | chr3.1:56594843-56594862 | None:intergenic | 45.0% | |
| TTGCTGTCTGTGAGTAGATG+CGG | + | chr3.1:56594457-56594476 | MS.gene63503:intron | 45.0% | |
| TTGTTCTTGCTTGCGTGAGA+AGG | + | chr3.1:56594364-56594383 | MS.gene63503:intron | 45.0% | |
| ! | AGCCAACACAATGAAGGTGT+TGG | - | chr3.1:56594094-56594113 | None:intergenic | 45.0% |
| ! | AGTTTACAGCAATGGTGGTG+TGG | + | chr3.1:56595664-56595683 | MS.gene63503:CDS | 45.0% |
| ! | CCTATTGAACCCCTCAGTTT+TGG | + | chr3.1:56595187-56595206 | MS.gene63503:CDS | 45.0% |
| ! | CTATATGCAATGGTTCTGCC+TGG | + | chr3.1:56595278-56595297 | MS.gene63503:CDS | 45.0% |
| ! | GATAAGCTGATTGATGGCTC+TGG | + | chr3.1:56594858-56594877 | MS.gene63503:CDS | 45.0% |
| ! | TTGATTCTGGTTGGAGGGTT+TGG | + | chr3.1:56593561-56593580 | MS.gene63503:CDS | 45.0% |
| !! | AAGGCATTGATTCTGGTTGG+AGG | + | chr3.1:56593555-56593574 | MS.gene63503:CDS | 45.0% |
| !! | AGGCATTGATTCTGGTTGGA+GGG | + | chr3.1:56593556-56593575 | MS.gene63503:CDS | 45.0% |
| !! | CAACACAATGAAGGTGTTGG+AGG | - | chr3.1:56594091-56594110 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr3.1:56594193-56594212 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr3.1:56594190-56594209 | MS.gene63503:intron | 45.0% |
| !! | CCTTCATTGTGTTGGCTTTG+AGG | + | chr3.1:56594097-56594116 | MS.gene63503:intron | 45.0% |
| !! | CTACAACACGTTGATGATGG+AGG | - | chr3.1:56594272-56594291 | None:intergenic | 45.0% |
| !! | TCATTGTGTTGGCTTTGAGG+GGG | + | chr3.1:56594100-56594119 | MS.gene63503:intron | 45.0% |
| !! | TCGCACTTTTTGAGGAAAGG+GGG | - | chr3.1:56594340-56594359 | None:intergenic | 45.0% |
| AGAGGCAGAATCCATACCTC+TGG | - | chr3.1:56594643-56594662 | None:intergenic | 50.0% | |
| ATTGGCGAGGGATGTCTCAT+TGG | + | chr3.1:56595443-56595462 | MS.gene63503:CDS | 50.0% | |
| CAAGCCCATGATTCTGCATC+AGG | + | chr3.1:56593641-56593660 | MS.gene63503:CDS | 50.0% | |
| CACAGACAGCAAAGGGATGA+TGG | - | chr3.1:56594449-56594468 | None:intergenic | 50.0% | |
| CCAGGACCAATTGCAACATC+AGG | - | chr3.1:56595470-56595489 | None:intergenic | 50.0% | |
| CCTGACTCAATAGTACAGCC+AGG | - | chr3.1:56595488-56595507 | None:intergenic | 50.0% | |
| CCTGATGTTGCAATTGGTCC+TGG | + | chr3.1:56595467-56595486 | MS.gene63503:CDS | 50.0% | |
| CCTGGCTGTACTATTGAGTC+AGG | + | chr3.1:56595485-56595504 | MS.gene63503:CDS | 50.0% | |
| CTTATCTCTGGCAAGAGCCA+AGG | - | chr3.1:56594844-56594863 | None:intergenic | 50.0% | |
| GAGACAGCCAAAATTGGCGA+GGG | + | chr3.1:56595431-56595450 | MS.gene63503:CDS | 50.0% | |
| GCAATTTAGACGACTAGGGG+CGG | - | chr3.1:56594043-56594062 | None:intergenic | 50.0% | |
| GCACTGTAATGCGAGGAGTT+CGG | + | chr3.1:56595525-56595544 | MS.gene63503:CDS | 50.0% | |
| GCAGAATCCATACCTCTGGT+TGG | - | chr3.1:56594639-56594658 | None:intergenic | 50.0% | |
| TATCCAGCAGCATCATCGGA+TGG | + | chr3.1:56595567-56595586 | MS.gene63503:CDS | 50.0% | |
| TCAAGCTGCACTGTAATGCG+AGG | + | chr3.1:56595518-56595537 | MS.gene63503:CDS | 50.0% | |
| TCTTCTTCCTGAGTGAGTCC+AGG | - | chr3.1:56595358-56595377 | None:intergenic | 50.0% | |
| TGAGACAGCCAAAATTGGCG+AGG | + | chr3.1:56595430-56595449 | MS.gene63503:CDS | 50.0% | |
| TGCTGTCTGTGAGTAGATGC+GGG | + | chr3.1:56594458-56594477 | MS.gene63503:intron | 50.0% | |
| TGGAGTTACTGAAGTGGTGC+TGG | + | chr3.1:56594603-56594622 | MS.gene63503:CDS | 50.0% | |
| TTGGGAACGCTGAGTGTCAA+TGG | - | chr3.1:56593600-56593619 | None:intergenic | 50.0% | |
| ! | AACAGGTCTGAGACTCTACC+TGG | + | chr3.1:56595337-56595356 | MS.gene63503:CDS | 50.0% |
| ! | ACTTCTTCCAAGTTGGCCAG+TGG | + | chr3.1:56595377-56595396 | MS.gene63503:CDS | 50.0% |
| ! | CAATGGTTCTGCCTGGATTC+TGG | + | chr3.1:56595285-56595304 | MS.gene63503:CDS | 50.0% |
| ! | GAGACATCCCTCGCCAATTT+TGG | - | chr3.1:56595441-56595460 | None:intergenic | 50.0% |
| ! | GAGGGTTTGGAACAAGGTTG+AGG | + | chr3.1:56593574-56593593 | MS.gene63503:CDS | 50.0% |
| ! | GGGTGGATTTAGTCCCACAT+CGG | + | chr3.1:56594120-56594139 | MS.gene63503:intron | 50.0% |
| ! | TGGTTGGAGGGTTTGGAACA+AGG | + | chr3.1:56593568-56593587 | MS.gene63503:CDS | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr3.1:56594188-56594207 | None:intergenic | 50.0% |
| !! | GACAGCAAAGGGATGATGGA+AGG | - | chr3.1:56594445-56594464 | None:intergenic | 50.0% |
| ACTGAACCATTGGGGACTGC+AGG | + | chr3.1:56594816-56594835 | MS.gene63503:CDS | 55.0% | |
| ATGCCATCCGATGATGCTGC+TGG | - | chr3.1:56595573-56595592 | None:intergenic | 55.0% | |
| CCAACGTCCATCCAGAATCC+AGG | - | chr3.1:56595299-56595318 | None:intergenic | 55.0% | |
| CCTGGATTCTGGATGGACGT+TGG | + | chr3.1:56595296-56595315 | MS.gene63503:CDS | 55.0% | |
| GACTCTACCTGGACTCACTC+AGG | + | chr3.1:56595348-56595367 | MS.gene63503:CDS | 55.0% | |
| GATGGACGTTGGACAGCCAA+GGG | + | chr3.1:56595307-56595326 | MS.gene63503:CDS | 55.0% | |
| GCACTCCTCACCTTACAAGC+CGG | + | chr3.1:56594180-56594199 | MS.gene63503:intron | 55.0% | |
| GGTTCTGCCTGGATTCTGGA+TGG | + | chr3.1:56595289-56595308 | MS.gene63503:CDS | 55.0% | |
| TATGGAAGAGACTACCGGGC+AGG | + | chr3.1:56595103-56595122 | MS.gene63503:CDS | 55.0% | |
| ! | CCAGTGGCCCTCACATTTTG+GGG | + | chr3.1:56595393-56595412 | MS.gene63503:CDS | 55.0% |
| ! | GCCAGTGGCCCTCACATTTT+GGG | + | chr3.1:56595392-56595411 | MS.gene63503:CDS | 55.0% |
| ! | GGTGTTGGAGGCTGCAATGA+AGG | - | chr3.1:56594079-56594098 | None:intergenic | 55.0% |
| ! | TGTTGGTCAATGGGCTCGTG+TGG | + | chr3.1:56595598-56595617 | MS.gene63503:CDS | 55.0% |
| !! | TTGTGTTGGCTTTGAGGGGG+TGG | + | chr3.1:56594103-56594122 | MS.gene63503:intron | 55.0% |
| AAGGGACCTGCAGTCCCCAA+TGG | - | chr3.1:56594825-56594844 | None:intergenic | 60.0% | |
| ATTGGGGACTGCAGGTCCCT+TGG | + | chr3.1:56594824-56594843 | MS.gene63503:CDS | 60.0% | |
| CCCCAAAATGTGAGGGCCAC+TGG | - | chr3.1:56595396-56595415 | None:intergenic | 60.0% | |
| CTAGGGGCGGACCGCAATTA+AGG | - | chr3.1:56594030-56594049 | None:intergenic | 60.0% | |
| GGATGGACGTTGGACAGCCA+AGG | + | chr3.1:56595306-56595325 | MS.gene63503:CDS | 60.0% | |
| ! | GGCCAGTGGCCCTCACATTT+TGG | + | chr3.1:56595391-56595410 | MS.gene63503:CDS | 60.0% |
| !! | TGGTGTGGTGTTGCCCCACA+AGG | + | chr3.1:56595679-56595698 | MS.gene63503:CDS | 60.0% |
| GGGGCGGACCGCAATTAAGG+CGG | - | chr3.1:56594027-56594046 | None:intergenic | 65.0% | |
| GTGAGGGCCACTGGCCAACT+TGG | - | chr3.1:56595387-56595406 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 56593552 | 56595742 | 56593552 | ID=MS.gene63503 |
| chr3.1 | mRNA | 56593552 | 56595742 | 56593552 | ID=MS.gene63503.t1;Parent=MS.gene63503 |
| chr3.1 | exon | 56593552 | 56593662 | 56593552 | ID=MS.gene63503.t1.exon1;Parent=MS.gene63503.t1 |
| chr3.1 | CDS | 56593552 | 56593662 | 56593552 | ID=cds.MS.gene63503.t1;Parent=MS.gene63503.t1 |
| chr3.1 | exon | 56594583 | 56594645 | 56594583 | ID=MS.gene63503.t1.exon2;Parent=MS.gene63503.t1 |
| chr3.1 | CDS | 56594583 | 56594645 | 56594583 | ID=cds.MS.gene63503.t1;Parent=MS.gene63503.t1 |
| chr3.1 | exon | 56594750 | 56594989 | 56594750 | ID=MS.gene63503.t1.exon3;Parent=MS.gene63503.t1 |
| chr3.1 | CDS | 56594750 | 56594989 | 56594750 | ID=cds.MS.gene63503.t1;Parent=MS.gene63503.t1 |
| chr3.1 | exon | 56595071 | 56595742 | 56595071 | ID=MS.gene63503.t1.exon4;Parent=MS.gene63503.t1 |
| chr3.1 | CDS | 56595071 | 56595742 | 56595071 | ID=cds.MS.gene63503.t1;Parent=MS.gene63503.t1 |
| Gene Sequence |
| Protein sequence |
