Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64007.t1 | XP_003589468.1 | 88.5 | 340 | 29 | 1 | 1 | 330 | 1 | 340 | 3.00E-98 | 368.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64007.t1 | Q8LEM6 | 77.7 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 2.9e-65 | 250.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64007.t1 | G7I756 | 88.5 | 340 | 29 | 1 | 1 | 330 | 1 | 340 | 2.2e-98 | 368.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051914 | MS.gene64007 | 0.810597 | 1.06E-50 | -1.69E-46 |
| MS.gene052308 | MS.gene64007 | 0.833552 | 4.99E-56 | -1.69E-46 |
| MS.gene053173 | MS.gene64007 | 0.827802 | 1.28E-54 | -1.69E-46 |
| MS.gene053283 | MS.gene64007 | 0.830069 | 3.61E-55 | -1.69E-46 |
| MS.gene054551 | MS.gene64007 | 0.834837 | 2.38E-56 | -1.69E-46 |
| MS.gene054593 | MS.gene64007 | 0.809732 | 1.64E-50 | -1.69E-46 |
| MS.gene054662 | MS.gene64007 | 0.820962 | 5.20E-53 | -1.69E-46 |
| MS.gene055578 | MS.gene64007 | 0.821697 | 3.52E-53 | -1.69E-46 |
| MS.gene05652 | MS.gene64007 | 0.828973 | 6.67E-55 | -1.69E-46 |
| MS.gene057669 | MS.gene64007 | 0.802774 | 4.78E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene64007 | 0.825014 | 5.90E-54 | -1.69E-46 |
| MS.gene059616 | MS.gene64007 | 0.822626 | 2.14E-53 | -1.69E-46 |
| MS.gene06093 | MS.gene64007 | 0.828167 | 1.04E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64007.t1 | MTR_1g024930 | 93.824 | 340 | 11 | 1 | 1 | 330 | 1 | 340 | 0.0 | 576 |
| MS.gene64007.t1 | MTR_3g113790 | 59.517 | 331 | 86 | 6 | 1 | 330 | 151 | 434 | 1.53e-117 | 346 |
| MS.gene64007.t1 | MTR_3g113790 | 79.221 | 154 | 32 | 0 | 1 | 154 | 151 | 304 | 7.43e-90 | 271 |
| MS.gene64007.t1 | MTR_1g057940 | 44.211 | 190 | 87 | 2 | 1 | 190 | 1 | 171 | 5.42e-57 | 186 |
| MS.gene64007.t1 | MTR_7g105810 | 50.685 | 146 | 72 | 0 | 1 | 146 | 1 | 146 | 1.68e-55 | 178 |
| MS.gene64007.t1 | MTR_7g105810 | 50.345 | 145 | 72 | 0 | 1 | 145 | 1 | 145 | 1.65e-54 | 177 |
| MS.gene64007.t1 | MTR_7g105810 | 50.345 | 145 | 72 | 0 | 1 | 145 | 14 | 158 | 3.56e-54 | 176 |
| MS.gene64007.t1 | MTR_7g105810 | 45.545 | 101 | 55 | 0 | 45 | 145 | 12 | 112 | 5.76e-29 | 109 |
| MS.gene64007.t1 | MTR_5g019720 | 32.632 | 95 | 62 | 1 | 15 | 109 | 37 | 129 | 2.38e-13 | 68.2 |
| MS.gene64007.t1 | MTR_5g019720 | 27.826 | 115 | 81 | 1 | 15 | 129 | 37 | 149 | 1.04e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64007.t1 | AT5G42560 | 52.439 | 328 | 118 | 7 | 1 | 326 | 1 | 292 | 9.23e-98 | 291 |
| MS.gene64007.t1 | AT5G42560 | 51.582 | 316 | 115 | 7 | 13 | 326 | 2 | 281 | 2.53e-91 | 274 |
| MS.gene64007.t1 | AT5G42560 | 51.582 | 316 | 115 | 7 | 13 | 326 | 2 | 281 | 2.53e-91 | 274 |
| MS.gene64007.t1 | AT1G19950 | 47.353 | 340 | 139 | 6 | 1 | 328 | 1 | 312 | 5.30e-91 | 275 |
| MS.gene64007.t1 | AT1G75700 | 64.103 | 156 | 56 | 0 | 1 | 156 | 1 | 156 | 1.42e-78 | 238 |
| MS.gene64007.t1 | AT1G75700 | 64.103 | 156 | 56 | 0 | 1 | 156 | 1 | 156 | 1.42e-78 | 238 |
| MS.gene64007.t1 | AT1G75700 | 54.054 | 185 | 56 | 1 | 1 | 156 | 1 | 185 | 7.45e-72 | 222 |
| MS.gene64007.t1 | AT2G36020 | 50.955 | 157 | 77 | 0 | 1 | 157 | 1 | 157 | 4.54e-59 | 191 |
| MS.gene64007.t1 | AT4G36720 | 29.032 | 93 | 64 | 2 | 15 | 107 | 45 | 135 | 1.48e-11 | 63.2 |
Find 84 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAGCTCCGATCAATTTC+TGG | 0.157517 | 1.4:-807573 | None:intergenic |
| GGAAGTAAAAGAGGAGTTAT+TGG | 0.203411 | 1.4:+808598 | MS.gene64007:CDS |
| TCCTCTTCAGCAACTGAAAA+TGG | 0.204563 | 1.4:+808881 | MS.gene64007:CDS |
| CAGATGAAGGATTAGACTTC+TGG | 0.208821 | 1.4:-808790 | None:intergenic |
| AATCGAAGCTGTTCAATTTC+CGG | 0.211353 | 1.4:-807081 | None:intergenic |
| CCGAATACTTTCTTCCATTC+TGG | 0.228086 | 1.4:-808927 | None:intergenic |
| ATAATTATATACCTTTGTTT+TGG | 0.244409 | 1.4:-807420 | None:intergenic |
| AAATTGAACAGCTTCGATTT+TGG | 0.251242 | 1.4:+807085 | MS.gene64007:CDS |
| AAAGTAGCCCCTCCTGTTGC+AGG | 0.293457 | 1.4:+808638 | MS.gene64007:CDS |
| GCTGTTGATTCAATATTCTT+TGG | 0.315816 | 1.4:-808851 | None:intergenic |
| GCGGCTGGTTGGCCCTTGGC+AGG | 0.329188 | 1.4:-808506 | None:intergenic |
| ACAATATTGCATACCAATAC+TGG | 0.331896 | 1.4:-807110 | None:intergenic |
| CCAGAATGGAAGAAAGTATT+CGG | 0.341573 | 1.4:+808927 | MS.gene64007:CDS |
| GGTTGGCCCTTGGCAGGTGC+AGG | 0.343393 | 1.4:-808500 | None:intergenic |
| AAGCAGCTACAGGAGGCTTC+TGG | 0.363846 | 1.4:-808700 | None:intergenic |
| ATGATAATTGTTTCAGATGA+AGG | 0.367093 | 1.4:-808803 | None:intergenic |
| TTTCAGGGATACAGAATGAT+AGG | 0.376443 | 1.4:+806771 | None:intergenic |
| GCAACAGGAGGGGCTACTTT+AGG | 0.385854 | 1.4:-808635 | None:intergenic |
| AACCAGCTATAGGAGGCTTC+TGG | 0.393471 | 1.4:-808730 | None:intergenic |
| CTACTGGGTTCCTACTGATC+TGG | 0.407544 | 1.4:-808975 | None:intergenic |
| TGAGTAGTTAAACCAGCTAT+AGG | 0.410981 | 1.4:-808740 | None:intergenic |
| ATTGCAGCAACGACCGGGAC+CGG | 0.424962 | 1.4:+808460 | MS.gene64007:intron |
| ATGACAGTGTGTGAGAGATT+TGG | 0.431821 | 1.4:+807238 | MS.gene64007:CDS |
| TGCAACATATGGTTTAAAGA+AGG | 0.441591 | 1.4:-807541 | None:intergenic |
| AATGTATTGTGAAGCTAAGT+TGG | 0.443796 | 1.4:+807373 | MS.gene64007:CDS |
| TGTTTGTTTAAACCTGCAAC+AGG | 0.458598 | 1.4:-808650 | None:intergenic |
| TGGTTATTTAAAGCAGCTAC+AGG | 0.459504 | 1.4:-808710 | None:intergenic |
| AGCAGCGGCTGGTTGGCCCT+TGG | 0.466244 | 1.4:-808510 | None:intergenic |
| AGATGAAGGATTAGACTTCT+GGG | 0.473622 | 1.4:-808789 | None:intergenic |
| TGTGGTTCTGTAGCAGCGGC+TGG | 0.474161 | 1.4:-808521 | None:intergenic |
| TGATAGGATCCTTTCTTACC+TGG | 0.479771 | 1.4:+806787 | MS.gene64007:CDS |
| TCTCAAAGAGCTGTTAGTTA+CGG | 0.482414 | 1.4:+807636 | MS.gene64007:CDS |
| CACAAGCGCCCAGGTAAGAA+AGG | 0.483813 | 1.4:-806796 | None:intergenic |
| GTTCCAAAAGGAAGTAAAAG+AGG | 0.484315 | 1.4:+808589 | MS.gene64007:CDS |
| CAGAATGGAAGAAAGTATTC+GGG | 0.484520 | 1.4:+808928 | MS.gene64007:CDS |
| AACCAGAAGCCTCCTATAGC+TGG | 0.489915 | 1.4:+808728 | MS.gene64007:CDS |
| ACTTAGCTTCACAATACATT+GGG | 0.490800 | 1.4:-807370 | None:intergenic |
| CTTGAAATTGCAGCAACGAC+CGG | 0.494610 | 1.4:+808454 | MS.gene64007:intron |
| CTTGAAGTTGTGCTAGAGGC+AGG | 0.497182 | 1.4:-808563 | None:intergenic |
| GTTCTGTAGCAGCGGCTGGT+TGG | 0.499552 | 1.4:-808517 | None:intergenic |
| ATCGGAGCTTGTCGGAACTA+AGG | 0.500483 | 1.4:+807583 | MS.gene64007:CDS |
| GTTGTGCTAGAGGCAGGAGA+TGG | 0.506091 | 1.4:-808557 | None:intergenic |
| ACCTGAGCGGACTGAGGTGC+TGG | 0.512203 | 1.4:-807708 | None:intergenic |
| TCGTAAACCTGCACCTGCCA+AGG | 0.519991 | 1.4:+808493 | MS.gene64007:CDS |
| TTGTGCTAGAGGCAGGAGAT+GGG | 0.523724 | 1.4:-808556 | None:intergenic |
| AACTTAGCTTCACAATACAT+TGG | 0.528637 | 1.4:-807371 | None:intergenic |
| AACTTCAAGTCAGTTCCAAA+AGG | 0.529032 | 1.4:+808577 | MS.gene64007:CDS |
| GGGGCTACTTTAGGAGCTTG+TGG | 0.533157 | 1.4:-808626 | None:intergenic |
| ACCAGCACCTCAGTCCGCTC+AGG | 0.534486 | 1.4:+807707 | MS.gene64007:CDS |
| TGTAAAGGAGGAGACCAGAA+TGG | 0.537004 | 1.4:+808913 | MS.gene64007:CDS |
| AAGAAAGTATTCGGGTTACA+CGG | 0.537361 | 1.4:+808936 | MS.gene64007:CDS |
| TTGAAATTGCAGCAACGACC+GGG | 0.537573 | 1.4:+808455 | MS.gene64007:intron |
| ATAGCATTCATACGCTGGAT+AGG | 0.541233 | 1.4:-807037 | None:intergenic |
| TTGCAGCAACGACCGGGACC+GGG | 0.545537 | 1.4:+808461 | MS.gene64007:intron |
| AGAAAGTATTCGGGTTACAC+GGG | 0.556108 | 1.4:+808937 | MS.gene64007:CDS |
| TGGAAAATCTCTTGTAAAGG+AGG | 0.556796 | 1.4:+808901 | MS.gene64007:CDS |
| AAATGGAAAATCTCTTGTAA+AGG | 0.557309 | 1.4:+808898 | MS.gene64007:CDS |
| ACTTTATAGCATTCATACGC+TGG | 0.570495 | 1.4:-807042 | None:intergenic |
| AGTAGTTGAAAAGAATAAGC+CGG | 0.571678 | 1.4:+807062 | MS.gene64007:CDS |
| TGTTTAAACCTGCAACAGGA+GGG | 0.572742 | 1.4:-808646 | None:intergenic |
| CGAACTCTCACACCCGGTCC+CGG | 0.573418 | 1.4:-808473 | None:intergenic |
| GTTTAAACCTGCAACAGGAG+GGG | 0.575918 | 1.4:-808645 | None:intergenic |
| CGTAAACCTGCACCTGCCAA+GGG | 0.577276 | 1.4:+808494 | MS.gene64007:CDS |
| AACATGAGCCAGAAATTGAT+CGG | 0.579657 | 1.4:+807565 | MS.gene64007:CDS |
| TCGGAACTAAGGACAAGGGC+GGG | 0.580754 | 1.4:+807594 | MS.gene64007:CDS |
| TTGTTTAAACCTGCAACAGG+AGG | 0.583194 | 1.4:-808647 | None:intergenic |
| GTTATTTAAAGCAGCTACAG+AGG | 0.587763 | 1.4:-808678 | None:intergenic |
| GATAGGATCCTTTCTTACCT+GGG | 0.588549 | 1.4:+806788 | MS.gene64007:CDS |
| GTGCTAGAGGCAGGAGATGG+GGG | 0.593522 | 1.4:-808554 | None:intergenic |
| AACTTGTGGTTCTGTAGCAG+CGG | 0.597787 | 1.4:-808525 | None:intergenic |
| GTAGTTAAACCAGCTATAGG+AGG | 0.599048 | 1.4:-808737 | None:intergenic |
| TGTGCTAGAGGCAGGAGATG+GGG | 0.599849 | 1.4:-808555 | None:intergenic |
| TTATTTAAAGCAGCTACAGG+AGG | 0.610125 | 1.4:-808707 | None:intergenic |
| CTGACTTGAAGTTGTGCTAG+AGG | 0.618717 | 1.4:-808567 | None:intergenic |
| TTTGTGGTACCCCAAAACAA+AGG | 0.623782 | 1.4:+807409 | MS.gene64007:CDS |
| TGAAACTTACACAAGCGCCC+AGG | 0.634837 | 1.4:-806805 | None:intergenic |
| GCTTGTCGGAACTAAGGACA+AGG | 0.640010 | 1.4:+807589 | MS.gene64007:CDS |
| AGAAATTGATCGGAGCTTGT+CGG | 0.643569 | 1.4:+807575 | MS.gene64007:CDS |
| TGAACTACCTGAGCGGACTG+AGG | 0.646512 | 1.4:-807714 | None:intergenic |
| GTCGGAACTAAGGACAAGGG+CGG | 0.652471 | 1.4:+807593 | MS.gene64007:CDS |
| GGTTTACGAACTCTCACACC+CGG | 0.663395 | 1.4:-808479 | None:intergenic |
| GAAAGTATTCGGGTTACACG+GGG | 0.677731 | 1.4:+808938 | MS.gene64007:CDS |
| ATCATAATGAACTACCTGAG+CGG | 0.709859 | 1.4:-807721 | None:intergenic |
| CTTGTCGGAACTAAGGACAA+GGG | 0.728246 | 1.4:+807590 | MS.gene64007:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTATATACCTTTGTTT+TGG | - | chr1.4:807423-807442 | None:intergenic | 15.0% |
| !!! | TAATTATATACCTTTGTTTT+GGG | - | chr1.4:807422-807441 | None:intergenic | 15.0% |
| !! | GATATGTTAAGAGAATAAAA+TGG | - | chr1.4:808392-808411 | None:intergenic | 20.0% |
| !!! | AATTATATACCTTTGTTTTG+GGG | - | chr1.4:807421-807440 | None:intergenic | 20.0% |
| !!! | AGGTATATAATTATTTTCTG+TGG | + | chr1.4:807429-807448 | MS.gene64007:intron | 20.0% |
| !!! | TAATGATTTTATTTGTCCTT+TGG | + | chr1.4:806986-807005 | MS.gene64007:intron | 20.0% |
| ! | AAATGGAAAATCTCTTGTAA+AGG | + | chr1.4:808898-808917 | MS.gene64007:CDS | 25.0% |
| ! | AACAATGAATACTTTCAAGA+TGG | - | chr1.4:808202-808221 | None:intergenic | 25.0% |
| ! | ACCTGTTAAATCATTAATCT+AGG | + | chr1.4:807855-807874 | MS.gene64007:intron | 25.0% |
| ! | ACTTTGGATATAAGTACTTA+TGG | + | chr1.4:807786-807805 | MS.gene64007:intron | 25.0% |
| ! | AGTTCATTATGATTATGCAT+TGG | + | chr1.4:807731-807750 | MS.gene64007:intron | 25.0% |
| ! | ATGATAATTGTTTCAGATGA+AGG | - | chr1.4:808806-808825 | None:intergenic | 25.0% |
| ! | ATTACATAGCACTGTAATTA+TGG | + | chr1.4:808309-808328 | MS.gene64007:intron | 25.0% |
| ! | CAACATGGAAAAATAAAAAC+AGG | - | chr1.4:807199-807218 | None:intergenic | 25.0% |
| ! | CCTGTTAAATCATTAATCTA+GGG | + | chr1.4:807856-807875 | MS.gene64007:intron | 25.0% |
| ! | TAAAGTTTACCTTTGTGTTA+GGG | + | chr1.4:807498-807517 | MS.gene64007:intron | 25.0% |
| ! | TGAATTGAATTCTTCTTGAA+GGG | + | chr1.4:807346-807365 | MS.gene64007:intron | 25.0% |
| ! | TGATTAACGATACAAAAACA+TGG | - | chr1.4:808071-808090 | None:intergenic | 25.0% |
| ! | TTGAATTGAATTCTTCTTGA+AGG | + | chr1.4:807345-807364 | MS.gene64007:intron | 25.0% |
| ! | TTGTTAGTTACAAGTTAAGT+AGG | - | chr1.4:808358-808377 | None:intergenic | 25.0% |
| ! | TTTGCATTTCTTCAATATGA+TGG | + | chr1.4:807475-807494 | MS.gene64007:intron | 25.0% |
| !! | ATTTGAGTTTGACTTAACTT+TGG | + | chr1.4:807770-807789 | MS.gene64007:intron | 25.0% |
| !!! | ATCTTGAAAGTATTCATTGT+TGG | + | chr1.4:808201-808220 | MS.gene64007:intron | 25.0% |
| !!! | CCAATTTTTTTGAATCGATA+TGG | + | chr1.4:806834-806853 | MS.gene64007:intron | 25.0% |
| !!! | CCATATCGATTCAAAAAAAT+TGG | - | chr1.4:806837-806856 | None:intergenic | 25.0% |
| !!! | TGGCATTTTTCATATTTTTG+TGG | + | chr1.4:807393-807412 | MS.gene64007:CDS | 25.0% |
| !!! | TTTTTATTTTTCCATGTTGC+AGG | + | chr1.4:807200-807219 | MS.gene64007:intron | 25.0% |
| AACTTAGCTTCACAATACAT+TGG | - | chr1.4:807374-807393 | None:intergenic | 30.0% | |
| AATGTATTGTGAAGCTAAGT+TGG | + | chr1.4:807373-807392 | MS.gene64007:CDS | 30.0% | |
| ACAATATTGCATACCAATAC+TGG | - | chr1.4:807113-807132 | None:intergenic | 30.0% | |
| ACTTAGCTTCACAATACATT+GGG | - | chr1.4:807373-807392 | None:intergenic | 30.0% | |
| ACTTTCAAGATGGAAAAGAA+AGG | - | chr1.4:808192-808211 | None:intergenic | 30.0% | |
| AGTAGTTGAAAAGAATAAGC+CGG | + | chr1.4:807062-807081 | MS.gene64007:CDS | 30.0% | |
| ATTCATTGTTGGAGGAAAAT+GGG | + | chr1.4:808212-808231 | MS.gene64007:intron | 30.0% | |
| CCCTAGATTAATGATTTAAC+AGG | - | chr1.4:807859-807878 | None:intergenic | 30.0% | |
| CTAGGAAACTAACTAATAAC+TGG | + | chr1.4:807888-807907 | MS.gene64007:intron | 30.0% | |
| GTAAAGTTTACCTTTGTGTT+AGG | + | chr1.4:807497-807516 | MS.gene64007:intron | 30.0% | |
| TATTCATTGTTGGAGGAAAA+TGG | + | chr1.4:808211-808230 | MS.gene64007:intron | 30.0% | |
| TGCAACATATGGTTTAAAGA+AGG | - | chr1.4:807544-807563 | None:intergenic | 30.0% | |
| TGGTTTAATGATTAGCATTG+TGG | + | chr1.4:806952-806971 | MS.gene64007:intron | 30.0% | |
| TGTCTAACAATACAAACACA+TGG | - | chr1.4:808003-808022 | None:intergenic | 30.0% | |
| ! | AAATTGAACAGCTTCGATTT+TGG | + | chr1.4:807085-807104 | MS.gene64007:CDS | 30.0% |
| ! | ATGGTGATAATGATTAGCAT+TGG | + | chr1.4:806853-806872 | MS.gene64007:intron | 30.0% |
| ! | GGTATGTATTAAGTTGTATG+TGG | - | chr1.4:807838-807857 | None:intergenic | 30.0% |
| ! | TGGTGATAATGATTAGCATT+GGG | + | chr1.4:806854-806873 | MS.gene64007:intron | 30.0% |
| ! | TTATTTGTCCTTTGGTGTAA+TGG | + | chr1.4:806994-807013 | MS.gene64007:intron | 30.0% |
| ! | TTGGAGATACTTTTGTATCA+TGG | + | chr1.4:807257-807276 | MS.gene64007:CDS | 30.0% |
| !! | GCTGTTGATTCAATATTCTT+TGG | - | chr1.4:808854-808873 | None:intergenic | 30.0% |
| !! | GTCATTTTGCTTATCAGAAA+AGG | - | chr1.4:807934-807953 | None:intergenic | 30.0% |
| !! | TTGAAAGTATTCATTGTTGG+AGG | + | chr1.4:808204-808223 | MS.gene64007:intron | 30.0% |
| AACATGAGCCAGAAATTGAT+CGG | + | chr1.4:807565-807584 | MS.gene64007:CDS | 35.0% | |
| AACTTCAAGTCAGTTCCAAA+AGG | + | chr1.4:808577-808596 | MS.gene64007:CDS | 35.0% | |
| AATCGAAGCTGTTCAATTTC+CGG | - | chr1.4:807084-807103 | None:intergenic | 35.0% | |
| ACTTTATAGCATTCATACGC+TGG | - | chr1.4:807045-807064 | None:intergenic | 35.0% | |
| AGATGAAGGATTAGACTTCT+GGG | - | chr1.4:808792-808811 | None:intergenic | 35.0% | |
| ATACTTCACGTTTAGCATCA+AGG | - | chr1.4:807141-807160 | None:intergenic | 35.0% | |
| ATCATAATGAACTACCTGAG+CGG | - | chr1.4:807724-807743 | None:intergenic | 35.0% | |
| CAAGATGGAAAAGAAAGGAA+AGG | - | chr1.4:808187-808206 | None:intergenic | 35.0% | |
| CATATTGTAGTGTTCTTTGC+TGG | + | chr1.4:808151-808170 | MS.gene64007:intron | 35.0% | |
| CTAAGAAAAACCAGATCAGT+AGG | + | chr1.4:808965-808984 | MS.gene64007:CDS | 35.0% | |
| GGAAGTAAAAGAGGAGTTAT+TGG | + | chr1.4:808598-808617 | MS.gene64007:CDS | 35.0% | |
| GTTCCAAAAGGAAGTAAAAG+AGG | + | chr1.4:808589-808608 | MS.gene64007:CDS | 35.0% | |
| TATGTTGTTCCCTAACACAA+AGG | - | chr1.4:807510-807529 | None:intergenic | 35.0% | |
| TCTCAAAGAGCTGTTAGTTA+CGG | + | chr1.4:807636-807655 | MS.gene64007:CDS | 35.0% | |
| TGAGTAGTTAAACCAGCTAT+AGG | - | chr1.4:808743-808762 | None:intergenic | 35.0% | |
| TGGAAAATCTCTTGTAAAGG+AGG | + | chr1.4:808901-808920 | MS.gene64007:CDS | 35.0% | |
| TGTTTGTTTAAACCTGCAAC+AGG | - | chr1.4:808653-808672 | None:intergenic | 35.0% | |
| ! | AAGTCTTATCCCACTAAGTA+GGG | - | chr1.4:806917-806936 | None:intergenic | 35.0% |
| ! | ACTCCTCTTTTACTTCCTTT+TGG | - | chr1.4:808595-808614 | None:intergenic | 35.0% |
| ! | GATAATGATTAGCATTGGGA+TGG | + | chr1.4:806858-806877 | MS.gene64007:intron | 35.0% |
| ! | GTTATTTAAAGCAGCTACAG+AGG | - | chr1.4:808681-808700 | None:intergenic | 35.0% |
| ! | TGGTTATTTAAAGCAGCTAC+AGG | - | chr1.4:808683-808702 | None:intergenic | 35.0% |
| ! | TTATTTAAAGCAGCTACAGG+AGG | - | chr1.4:808710-808729 | None:intergenic | 35.0% |
| ! | TTTTCCATGTTGCAGGATTT+TGG | + | chr1.4:807207-807226 | MS.gene64007:intron | 35.0% |
| !! | AAGAAAGTATTCGGGTTACA+CGG | + | chr1.4:808936-808955 | MS.gene64007:CDS | 35.0% |
| !! | CAGAATGGAAGAAAGTATTC+GGG | + | chr1.4:808928-808947 | MS.gene64007:CDS | 35.0% |
| !! | CCAGAATGGAAGAAAGTATT+CGG | + | chr1.4:808927-808946 | MS.gene64007:CDS | 35.0% |
| ACTAAGTAGGGTCAGCTAAA+TGG | - | chr1.4:806905-806924 | None:intergenic | 40.0% | |
| AGAAATTGATCGGAGCTTGT+CGG | + | chr1.4:807575-807594 | MS.gene64007:CDS | 40.0% | |
| ATAGCATTCATACGCTGGAT+AGG | - | chr1.4:807040-807059 | None:intergenic | 40.0% | |
| ATGACAGTGTGTGAGAGATT+TGG | + | chr1.4:807238-807257 | MS.gene64007:CDS | 40.0% | |
| ATTTAGCTGACCCTACTTAG+TGG | + | chr1.4:806904-806923 | MS.gene64007:intron | 40.0% | |
| CAGATGAAGGATTAGACTTC+TGG | - | chr1.4:808793-808812 | None:intergenic | 40.0% | |
| CCGAATACTTTCTTCCATTC+TGG | - | chr1.4:808930-808949 | None:intergenic | 40.0% | |
| CTACTTAGTGGGATAAGACT+TGG | + | chr1.4:806916-806935 | MS.gene64007:intron | 40.0% | |
| GATAGGATCCTTTCTTACCT+GGG | + | chr1.4:806788-806807 | MS.gene64007:CDS | 40.0% | |
| GTAGTTAAACCAGCTATAGG+AGG | - | chr1.4:808740-808759 | None:intergenic | 40.0% | |
| TACAAGTTAAGTAGGTTGCC+AGG | - | chr1.4:808350-808369 | None:intergenic | 40.0% | |
| TCCTCTTCAGCAACTGAAAA+TGG | + | chr1.4:808881-808900 | MS.gene64007:CDS | 40.0% | |
| TGATAGGATCCTTTCTTACC+TGG | + | chr1.4:806787-806806 | MS.gene64007:CDS | 40.0% | |
| TGTTTAAACCTGCAACAGGA+GGG | - | chr1.4:808649-808668 | None:intergenic | 40.0% | |
| TTGGAGGAAAATGGGAGAAA+GGG | + | chr1.4:808220-808239 | MS.gene64007:intron | 40.0% | |
| TTGTTTAAACCTGCAACAGG+AGG | - | chr1.4:808650-808669 | None:intergenic | 40.0% | |
| TTTAGCTGACCCTACTTAGT+GGG | + | chr1.4:806905-806924 | MS.gene64007:intron | 40.0% | |
| TTTGTGGTACCCCAAAACAA+AGG | + | chr1.4:807409-807428 | MS.gene64007:CDS | 40.0% | |
| ! | AATCTAGGGCGATTTGAACT+AGG | + | chr1.4:807870-807889 | MS.gene64007:intron | 40.0% |
| ! | ATTTTCAGTTGCTGAAGAGG+AGG | - | chr1.4:808882-808901 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCCCACTAAGT+AGG | - | chr1.4:806918-806937 | None:intergenic | 40.0% |
| ! | GGCTCATGTTTTGCAACATA+TGG | - | chr1.4:807555-807574 | None:intergenic | 40.0% |
| ! | TCCATTTTCAGTTGCTGAAG+AGG | - | chr1.4:808885-808904 | None:intergenic | 40.0% |
| !! | AGAAAGTATTCGGGTTACAC+GGG | + | chr1.4:808937-808956 | MS.gene64007:CDS | 40.0% |
| !!! | TGTAATGGCAGGAGTGTTTT+TGG | + | chr1.4:807009-807028 | MS.gene64007:intron | 40.0% |
| !!! | TTCGATTTTGGTGCCAGTAT+TGG | + | chr1.4:807097-807116 | MS.gene64007:CDS | 40.0% |
| CTTGAAATTGCAGCAACGAC+CGG | + | chr1.4:808454-808473 | MS.gene64007:intron | 45.0% | |
| CTTGTCGGAACTAAGGACAA+GGG | + | chr1.4:807590-807609 | MS.gene64007:CDS | 45.0% | |
| GACAAGCTCCGATCAATTTC+TGG | - | chr1.4:807576-807595 | None:intergenic | 45.0% | |
| GCAACCAAAATCCTGCAACA+TGG | - | chr1.4:807214-807233 | None:intergenic | 45.0% | |
| GTTGGAGGAAAATGGGAGAA+AGG | + | chr1.4:808219-808238 | MS.gene64007:intron | 45.0% | |
| GTTTAAACCTGCAACAGGAG+GGG | - | chr1.4:808648-808667 | None:intergenic | 45.0% | |
| TGGCAACAACAACAACAACC+TGG | + | chr1.4:808329-808348 | MS.gene64007:intron | 45.0% | |
| TGTAAAGGAGGAGACCAGAA+TGG | + | chr1.4:808913-808932 | MS.gene64007:CDS | 45.0% | |
| TTGAAATTGCAGCAACGACC+GGG | + | chr1.4:808455-808474 | MS.gene64007:intron | 45.0% | |
| ! | AACTTGTGGTTCTGTAGCAG+CGG | - | chr1.4:808528-808547 | None:intergenic | 45.0% |
| ! | CTGACTTGAAGTTGTGCTAG+AGG | - | chr1.4:808570-808589 | None:intergenic | 45.0% |
| ! | GACTTGGTTGTTGTTGTGTC+TGG | + | chr1.4:806932-806951 | MS.gene64007:intron | 45.0% |
| ! | TTGTCCTTTGGTGTAATGGC+AGG | + | chr1.4:806998-807017 | MS.gene64007:intron | 45.0% |
| !! | GAAAGTATTCGGGTTACACG+GGG | + | chr1.4:808938-808957 | MS.gene64007:CDS | 45.0% |
| AACCAGAAGCCTCCTATAGC+TGG | + | chr1.4:808728-808747 | MS.gene64007:CDS | 50.0% | |
| AACCAGCTATAGGAGGCTTC+TGG | - | chr1.4:808733-808752 | None:intergenic | 50.0% | |
| ATCGGAGCTTGTCGGAACTA+AGG | + | chr1.4:807583-807602 | MS.gene64007:CDS | 50.0% | |
| CACTCCTGCCATTACACCAA+AGG | - | chr1.4:807005-807024 | None:intergenic | 50.0% | |
| CTACTGGGTTCCTACTGATC+TGG | - | chr1.4:808978-808997 | None:intergenic | 50.0% | |
| CTTGAAGTTGTGCTAGAGGC+AGG | - | chr1.4:808566-808585 | None:intergenic | 50.0% | |
| GATGGGGGTTCTTCAACTTG+TGG | - | chr1.4:808542-808561 | None:intergenic | 50.0% | |
| GCTTGTCGGAACTAAGGACA+AGG | + | chr1.4:807589-807608 | MS.gene64007:CDS | 50.0% | |
| GGTTTACGAACTCTCACACC+CGG | - | chr1.4:808482-808501 | None:intergenic | 50.0% | |
| TGAAACTTACACAAGCGCCC+AGG | - | chr1.4:806808-806827 | None:intergenic | 50.0% | |
| TTGTGCTAGAGGCAGGAGAT+GGG | - | chr1.4:808559-808578 | None:intergenic | 50.0% | |
| AAAGTAGCCCCTCCTGTTGC+AGG | + | chr1.4:808638-808657 | MS.gene64007:CDS | 55.0% | |
| AAGCAGCTACAGGAGGCTTC+TGG | - | chr1.4:808703-808722 | None:intergenic | 55.0% | |
| CACAAGCGCCCAGGTAAGAA+AGG | - | chr1.4:806799-806818 | None:intergenic | 55.0% | |
| CGTAAACCTGCACCTGCCAA+GGG | + | chr1.4:808494-808513 | MS.gene64007:CDS | 55.0% | |
| GTCGGAACTAAGGACAAGGG+CGG | + | chr1.4:807593-807612 | MS.gene64007:CDS | 55.0% | |
| GTTGTGCTAGAGGCAGGAGA+TGG | - | chr1.4:808560-808579 | None:intergenic | 55.0% | |
| TCGGAACTAAGGACAAGGGC+GGG | + | chr1.4:807594-807613 | MS.gene64007:CDS | 55.0% | |
| TCGTAAACCTGCACCTGCCA+AGG | + | chr1.4:808493-808512 | MS.gene64007:CDS | 55.0% | |
| TGTGCTAGAGGCAGGAGATG+GGG | - | chr1.4:808558-808577 | None:intergenic | 55.0% | |
| ! | GCAACAGGAGGGGCTACTTT+AGG | - | chr1.4:808638-808657 | None:intergenic | 55.0% |
| ! | GGGGCTACTTTAGGAGCTTG+TGG | - | chr1.4:808629-808648 | None:intergenic | 55.0% |
| !! | TGAACTACCTGAGCGGACTG+AGG | - | chr1.4:807717-807736 | None:intergenic | 55.0% |
| ATTGCAGCAACGACCGGGAC+CGG | + | chr1.4:808460-808479 | MS.gene64007:intron | 60.0% | |
| GTGCTAGAGGCAGGAGATGG+GGG | - | chr1.4:808557-808576 | None:intergenic | 60.0% | |
| GTTCTGTAGCAGCGGCTGGT+TGG | - | chr1.4:808520-808539 | None:intergenic | 60.0% | |
| ! | TGTGGTTCTGTAGCAGCGGC+TGG | - | chr1.4:808524-808543 | None:intergenic | 60.0% |
| ACCAGCACCTCAGTCCGCTC+AGG | + | chr1.4:807707-807726 | MS.gene64007:CDS | 65.0% | |
| CGAACTCTCACACCCGGTCC+CGG | - | chr1.4:808476-808495 | None:intergenic | 65.0% | |
| TTGCAGCAACGACCGGGACC+GGG | + | chr1.4:808461-808480 | MS.gene64007:intron | 65.0% | |
| !! | ACCTGAGCGGACTGAGGTGC+TGG | - | chr1.4:807711-807730 | None:intergenic | 65.0% |
| ! | AGCAGCGGCTGGTTGGCCCT+TGG | - | chr1.4:808513-808532 | None:intergenic | 70.0% |
| ! | GGTTGGCCCTTGGCAGGTGC+AGG | - | chr1.4:808503-808522 | None:intergenic | 70.0% |
| ! | GCGGCTGGTTGGCCCTTGGC+AGG | - | chr1.4:808509-808528 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 806786 | 808997 | 806786 | ID=MS.gene64007 |
| chr1.4 | mRNA | 806786 | 808997 | 806786 | ID=MS.gene64007.t1;Parent=MS.gene64007 |
| chr1.4 | exon | 806786 | 806817 | 806786 | ID=MS.gene64007.t1.exon1;Parent=MS.gene64007.t1 |
| chr1.4 | CDS | 806786 | 806817 | 806786 | ID=cds.MS.gene64007.t1;Parent=MS.gene64007.t1 |
| chr1.4 | exon | 807020 | 807118 | 807020 | ID=MS.gene64007.t1.exon2;Parent=MS.gene64007.t1 |
| chr1.4 | CDS | 807020 | 807118 | 807020 | ID=cds.MS.gene64007.t1;Parent=MS.gene64007.t1 |
| chr1.4 | exon | 807222 | 807278 | 807222 | ID=MS.gene64007.t1.exon3;Parent=MS.gene64007.t1 |
| chr1.4 | CDS | 807222 | 807278 | 807222 | ID=cds.MS.gene64007.t1;Parent=MS.gene64007.t1 |
| chr1.4 | exon | 807367 | 807430 | 807367 | ID=MS.gene64007.t1.exon4;Parent=MS.gene64007.t1 |
| chr1.4 | CDS | 807367 | 807430 | 807367 | ID=cds.MS.gene64007.t1;Parent=MS.gene64007.t1 |
| chr1.4 | exon | 807519 | 807728 | 807519 | ID=MS.gene64007.t1.exon5;Parent=MS.gene64007.t1 |
| chr1.4 | CDS | 807519 | 807728 | 807519 | ID=cds.MS.gene64007.t1;Parent=MS.gene64007.t1 |
| chr1.4 | exon | 808467 | 808997 | 808467 | ID=MS.gene64007.t1.exon6;Parent=MS.gene64007.t1 |
| chr1.4 | CDS | 808467 | 808997 | 808467 | ID=cds.MS.gene64007.t1;Parent=MS.gene64007.t1 |
| Gene Sequence |
| Protein sequence |
