Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64420.t1 | XP_013463523.1 | 98.5 | 1083 | 16 | 0 | 1 | 1083 | 1 | 1083 | 0.00E+00 | 1803.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64420.t1 | B5X0I6 | 78.8 | 869 | 182 | 2 | 1 | 868 | 1 | 868 | 0.0e+00 | 1396.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64420.t1 | A0A072V869 | 98.5 | 1083 | 16 | 0 | 1 | 1083 | 1 | 1083 | 0.0e+00 | 1803.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049744 | MS.gene64420 | 0.810535 | 1.10E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene64420 | 0.802559 | 5.30E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene64420 | 0.800636 | 1.31E-48 | -1.69E-46 |
| MS.gene058289 | MS.gene64420 | 0.836394 | 9.60E-57 | -1.69E-46 |
| MS.gene058919 | MS.gene64420 | 0.80253 | 5.37E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80820 | MS.gene64420 | PPI |
| MS.gene20541 | MS.gene64420 | PPI |
| MS.gene90689 | MS.gene64420 | PPI |
| MS.gene64420 | MS.gene049685 | PPI |
| MS.gene061960 | MS.gene64420 | PPI |
| MS.gene27302 | MS.gene64420 | PPI |
| MS.gene24268 | MS.gene64420 | PPI |
| MS.gene063673 | MS.gene64420 | PPI |
| MS.gene64420 | MS.gene29637 | PPI |
| MS.gene67503 | MS.gene64420 | PPI |
| MS.gene64420 | MS.gene64820 | PPI |
| MS.gene64420 | MS.gene67685 | PPI |
| MS.gene008348 | MS.gene64420 | PPI |
| MS.gene56730 | MS.gene64420 | PPI |
| MS.gene64420 | MS.gene80691 | PPI |
| MS.gene64420 | MS.gene26972 | PPI |
| MS.gene64420 | MS.gene042595 | PPI |
| MS.gene64420 | MS.gene05026 | PPI |
| MS.gene64420 | MS.gene87979 | PPI |
| MS.gene55174 | MS.gene64420 | PPI |
| MS.gene64420 | MS.gene66970 | PPI |
| MS.gene061575 | MS.gene64420 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64420.t1 | MTR_2g041420 | 99.169 | 1083 | 9 | 0 | 1 | 1083 | 1 | 1083 | 0.0 | 2232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 238 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATGTCTCGCAATTATC+TGG | 0.164790 | 2.4:+48691412 | None:intergenic |
| CTCAAACTTTGAAAAGGTTT+TGG | 0.174983 | 2.4:-48691443 | MS.gene64420:CDS |
| AAGCTCTTGGTGATGGAATT+TGG | 0.184049 | 2.4:-48687811 | MS.gene64420:CDS |
| ATCATTGTTCATCTGAGTTT+GGG | 0.189636 | 2.4:+48681874 | None:intergenic |
| CATCATTGTTCATCTGAGTT+TGG | 0.208245 | 2.4:+48681873 | None:intergenic |
| TGATCAGTTTCGCCAGATTT+TGG | 0.213195 | 2.4:-48696586 | MS.gene64420:CDS |
| GAATTTGTGTTTCCTTATTA+TGG | 0.240945 | 2.4:-48692397 | MS.gene64420:intron |
| ATCTTTCAGCTGTTGGAATT+AGG | 0.262771 | 2.4:-48693338 | MS.gene64420:intron |
| ATTACAGGCATTTCTTGAAT+TGG | 0.268349 | 2.4:-48688222 | MS.gene64420:intron |
| AAAGGAGGAGCATTTCATTT+TGG | 0.273049 | 2.4:-48696281 | MS.gene64420:CDS |
| GACACTTGTCATTCACCTTC+AGG | 0.277390 | 2.4:+48686272 | None:intergenic |
| CACCCTCAAACTACACATTA+AGG | 0.280595 | 2.4:-48684291 | MS.gene64420:CDS |
| CTGAGTTTGGGGCTCCTCTC+TGG | 0.288118 | 2.4:+48681886 | None:intergenic |
| CTTGAGCAATTAAATGAATC+TGG | 0.290208 | 2.4:-48687629 | MS.gene64420:CDS |
| TAGCTTTCCTAATGAATTCA+TGG | 0.293410 | 2.4:+48690208 | None:intergenic |
| GGCAACACAATATTACAATA+AGG | 0.313065 | 2.4:-48696260 | MS.gene64420:CDS |
| AGAATTCCGAAGAGGAAGTT+AGG | 0.318766 | 2.4:-48698042 | MS.gene64420:CDS |
| ATTTAATTGCTCAAGTAATC+TGG | 0.318906 | 2.4:+48687637 | None:intergenic |
| GACAATGTTCCTGCTCTTCT+AGG | 0.320276 | 2.4:-48695849 | MS.gene64420:CDS |
| TCAACAGACTGTTCTCTTAC+AGG | 0.322492 | 2.4:+48681354 | None:intergenic |
| GGACTCGTTTGCCTCATTAT+TGG | 0.323538 | 2.4:+48681375 | None:intergenic |
| ATTGAATTACTCAATAATAT+TGG | 0.325278 | 2.4:-48687973 | MS.gene64420:CDS |
| ATCAGCAACTGACCATAATA+AGG | 0.347015 | 2.4:+48692385 | None:intergenic |
| GCTTCCAACCTACATATTCA+TGG | 0.349041 | 2.4:-48683443 | MS.gene64420:CDS |
| AGGAGAGTGATGGAGAAATC+AGG | 0.354875 | 2.4:-48681326 | MS.gene64420:CDS |
| CATTCTATTAAGCATTGAAT+TGG | 0.355555 | 2.4:-48686771 | MS.gene64420:intron |
| AACAAGCTCCTCTCGATCTT+TGG | 0.357089 | 2.4:-48697961 | MS.gene64420:CDS |
| TGAAGAGCAAAGAAAGATTC+AGG | 0.359712 | 2.4:-48683258 | MS.gene64420:intron |
| GGCTGATATGATGGATGAAC+AGG | 0.360374 | 2.4:-48681939 | MS.gene64420:CDS |
| AAATGAGTAGCTTCTAGCTT+TGG | 0.363956 | 2.4:+48685937 | None:intergenic |
| GGTCTATGTCGCTACAAATT+AGG | 0.365036 | 2.4:-48693665 | MS.gene64420:CDS |
| GCATGAGGACGAATTGAAAA+TGG | 0.367183 | 2.4:-48683125 | MS.gene64420:CDS |
| GCATTTAAGATTGTGTTAGA+TGG | 0.368524 | 2.4:-48695879 | MS.gene64420:CDS |
| TAGGTGAGAGCAACGGTTGC+AGG | 0.369321 | 2.4:-48683506 | MS.gene64420:CDS |
| GCCACTGTTCCGCTTCATAA+TGG | 0.372932 | 2.4:+48684353 | None:intergenic |
| ATACTGCACCCACTTACTTT+CGG | 0.378856 | 2.4:-48683387 | MS.gene64420:CDS |
| AAGAGAACAGTCTGTTGATA+TGG | 0.382003 | 2.4:-48681349 | MS.gene64420:CDS |
| AGATATGCATCAATGTAGTC+TGG | 0.385929 | 2.4:+48686827 | None:intergenic |
| GCAAATCATTTCTTCTTCAC+TGG | 0.386727 | 2.4:-48693246 | MS.gene64420:CDS |
| TTACAGGCATTTCTTGAATT+GGG | 0.393382 | 2.4:-48688221 | MS.gene64420:intron |
| CCACTGTTCCGCTTCATAAT+GGG | 0.394229 | 2.4:+48684354 | None:intergenic |
| TCTTGTTGCACTTGCAATCA+TGG | 0.396500 | 2.4:-48693486 | MS.gene64420:CDS |
| AAAGCTAGAAGCTACTCATT+TGG | 0.397882 | 2.4:-48685935 | MS.gene64420:CDS |
| AACACGCTCAAATGCCTGTC+GGG | 0.399209 | 2.4:+48693628 | None:intergenic |
| TGATTCGCTTGAGTTGTATA+AGG | 0.399501 | 2.4:-48694503 | MS.gene64420:intron |
| TACTTCTACACTTCAATTCA+AGG | 0.404433 | 2.4:-48687744 | MS.gene64420:CDS |
| CACGGTCTTCTCGCATTAGC+TGG | 0.405913 | 2.4:-48681839 | MS.gene64420:CDS |
| TGTGATATGAATAGGGAAAC+TGG | 0.409251 | 2.4:-48685996 | MS.gene64420:intron |
| ATATCGCCTAATCTTGTTCA+AGG | 0.410545 | 2.4:-48687591 | MS.gene64420:intron |
| TGTAGAAGTAGCAGCATCAA+TGG | 0.412103 | 2.4:+48687757 | None:intergenic |
| CATGGTGACCATTACTTTCA+AGG | 0.414420 | 2.4:+48687702 | None:intergenic |
| AATAAGGAAACACAAATTCA+TGG | 0.416035 | 2.4:+48692401 | None:intergenic |
| TAATAAGAATGAGACTTTGT+TGG | 0.418797 | 2.4:+48693165 | None:intergenic |
| TGCCTGCCTCCGCCTGCTAA+TGG | 0.420567 | 2.4:+48681422 | None:intergenic |
| TTATCCAAACGTCAGGCATC+TGG | 0.420793 | 2.4:+48684600 | None:intergenic |
| AGCAAAGGGTGAAGTTGAAC+AGG | 0.420821 | 2.4:-48695910 | MS.gene64420:CDS |
| TAGATCCTTCCTCCAAAATC+TGG | 0.421174 | 2.4:+48696574 | None:intergenic |
| TGCACTCTCAAACTTTGAAA+AGG | 0.423467 | 2.4:-48691449 | MS.gene64420:CDS |
| TTGTCCAGATGCCTGACGTT+TGG | 0.425536 | 2.4:-48684604 | MS.gene64420:CDS |
| CCCAGCATAGATAATGCATT+TGG | 0.427360 | 2.4:+48686250 | None:intergenic |
| ACAAGGGCCATGAATTCATT+AGG | 0.428291 | 2.4:-48690215 | MS.gene64420:CDS |
| CCTCCGCCTGCTAATGGTTG+AGG | 0.428569 | 2.4:+48681428 | None:intergenic |
| CTCACAGCTGCAGGGCAATT+CGG | 0.430397 | 2.4:+48693698 | None:intergenic |
| AAGCATCACCTGGGCATCAC+GGG | 0.431312 | 2.4:+48690173 | None:intergenic |
| AATGAATTCATGGCCCTTGT+CGG | 0.434961 | 2.4:+48690218 | None:intergenic |
| GTTTGAAAGGGGAGAATTTG+AGG | 0.435099 | 2.4:-48687941 | MS.gene64420:intron |
| GAGACAGGAACTTGCTCGTC+AGG | 0.439526 | 2.4:-48683312 | MS.gene64420:CDS |
| TCCTCTTCGGAATTCTGAAC+CGG | 0.442767 | 2.4:+48698049 | None:intergenic |
| CCCTCTACTTGGGTTGGAAA+AGG | 0.447245 | 2.4:-48696214 | MS.gene64420:intron |
| ATTGAAAATGGTGCAACAAC+AGG | 0.449547 | 2.4:-48683113 | MS.gene64420:CDS |
| TTCAGCATCAACCCTTCAAA+AGG | 0.450465 | 2.4:-48684239 | MS.gene64420:CDS |
| CAAATTAGGTCAATTTGAAA+AGG | 0.454791 | 2.4:-48693651 | MS.gene64420:CDS |
| AAACCTTAATGTGTAGTTTG+AGG | 0.456515 | 2.4:+48684288 | None:intergenic |
| AACCTTAATGTGTAGTTTGA+GGG | 0.457259 | 2.4:+48684289 | None:intergenic |
| AACCATTAGCAGGCGGAGGC+AGG | 0.459253 | 2.4:-48681424 | MS.gene64420:CDS |
| AGACTTTGTTGGACCATGAT+TGG | 0.460216 | 2.4:+48693176 | None:intergenic |
| ATTAGCTGGACTTGAGGATT+CGG | 0.463343 | 2.4:-48681825 | MS.gene64420:CDS |
| ACACTTGTCATTCACCTTCA+GGG | 0.464528 | 2.4:+48686273 | None:intergenic |
| GGAGAGTGATGGAGAAATCA+GGG | 0.464663 | 2.4:-48681325 | MS.gene64420:CDS |
| GGACAAGTACAGATTAAGTT+GGG | 0.467799 | 2.4:-48691484 | MS.gene64420:CDS |
| TATGATGGATGAACAGGAAA+TGG | 0.467895 | 2.4:-48681933 | MS.gene64420:CDS |
| GCATTAGCTGTTACCAATCA+TGG | 0.468530 | 2.4:-48693189 | MS.gene64420:CDS |
| TGCCCTGCAGCTGTGAGACT+TGG | 0.468768 | 2.4:-48693692 | MS.gene64420:CDS |
| CTCCGCCTGCTAATGGTTGA+GGG | 0.469937 | 2.4:+48681429 | None:intergenic |
| ACAACAAATACGACAGAGAC+AGG | 0.473301 | 2.4:-48683327 | MS.gene64420:CDS |
| GCCTGACGTTTGGATAAATC+TGG | 0.474134 | 2.4:-48684594 | MS.gene64420:CDS |
| TCCAAATGCATTATCTATGC+TGG | 0.474432 | 2.4:-48686251 | MS.gene64420:CDS |
| GTCCGACACAGGAGCTGCAC+TGG | 0.475287 | 2.4:-48688183 | MS.gene64420:CDS |
| TTGGTGTCCTTCAGTTTGAA+AGG | 0.476012 | 2.4:-48687954 | MS.gene64420:CDS |
| TTTAAGGAAGCTCTTGGTGA+TGG | 0.479020 | 2.4:-48687818 | MS.gene64420:CDS |
| AGAGACAAAACAAAGAGAAA+AGG | 0.480273 | 2.4:-48696299 | MS.gene64420:CDS |
| AGGTGGAAAGAGGAGGAAGA+AGG | 0.482244 | 2.4:-48682002 | MS.gene64420:CDS |
| TTCAAAAGATATCTTTGCAC+AGG | 0.482825 | 2.4:-48684740 | MS.gene64420:intron |
| ACATGCACGAGCCCTCTACT+TGG | 0.483852 | 2.4:-48696225 | MS.gene64420:CDS |
| GGCTGAGGAAGCACGGCGCA+AGG | 0.486164 | 2.4:-48683282 | MS.gene64420:CDS |
| TGGTGTCCTTCAGTTTGAAA+GGG | 0.486387 | 2.4:-48687953 | MS.gene64420:CDS |
| CAGTGGCATCACTCGCTCTC+CGG | 0.487534 | 2.4:+48686179 | None:intergenic |
| GGGACAAGTACAGATTAAGT+TGG | 0.488557 | 2.4:-48691485 | MS.gene64420:CDS |
| ATTCCAAGTCTCACAGCTGC+AGG | 0.489740 | 2.4:+48693689 | None:intergenic |
| ACTTGCTCGTCAGGTTGCAT+TGG | 0.490048 | 2.4:-48683303 | MS.gene64420:CDS |
| AGAGAAGAAAAGGTGGAAAG+AGG | 0.490094 | 2.4:-48682012 | MS.gene64420:CDS |
| ATATTATTGAGTAATTCAAT+TGG | 0.491591 | 2.4:+48687976 | None:intergenic |
| AGAAACAGAGGCTGATATGA+TGG | 0.492446 | 2.4:-48681948 | MS.gene64420:CDS |
| GACCTCCCTCAACCATTAGC+AGG | 0.493021 | 2.4:-48681434 | MS.gene64420:CDS |
| TTGCTATCTTAAATGCCCTC+GGG | 0.495001 | 2.4:-48696348 | MS.gene64420:CDS |
| GGAACTACTTTGCTGCAGTC+AGG | 0.496205 | 2.4:-48685975 | MS.gene64420:CDS |
| CACGAGCCCTCTACTTGGGT+TGG | 0.498622 | 2.4:-48696220 | MS.gene64420:CDS |
| TACACATTAAGGTTTGATGC+AGG | 0.502650 | 2.4:-48684280 | MS.gene64420:CDS |
| AGAAGCTACTCATTTGGAAA+AGG | 0.503503 | 2.4:-48685929 | MS.gene64420:CDS |
| ATTAACCCTAACTTCCTCTT+CGG | 0.504657 | 2.4:+48698036 | None:intergenic |
| ATAAGGAAACACAAATTCAT+GGG | 0.505012 | 2.4:+48692402 | None:intergenic |
| ATTCTCCCCTTTCAAACTGA+AGG | 0.505407 | 2.4:+48687947 | None:intergenic |
| GCAGCTGTGAGACTTGGAAT+AGG | 0.507108 | 2.4:-48693686 | MS.gene64420:CDS |
| TCTACAGAGAGCCATCCATT+TGG | 0.507314 | 2.4:-48684314 | MS.gene64420:CDS |
| GCCAGATTTATCCAAACGTC+AGG | 0.507859 | 2.4:+48684593 | None:intergenic |
| CTTCATAATGGGTACGAGCC+AGG | 0.509207 | 2.4:+48684365 | None:intergenic |
| CACATTAAGGTTTGATGCAG+GGG | 0.511303 | 2.4:-48684278 | MS.gene64420:CDS |
| TCAATTTGAAAAGGCCCGAC+AGG | 0.516709 | 2.4:-48693642 | MS.gene64420:CDS |
| AATTGATCCCCGTGATGCCC+AGG | 0.519992 | 2.4:-48690181 | MS.gene64420:intron |
| GAAGAAAAGGTGGAAAGAGG+AGG | 0.522338 | 2.4:-48682009 | MS.gene64420:CDS |
| CATCAAATCCATGAATATGT+AGG | 0.524899 | 2.4:+48683435 | None:intergenic |
| TGTTCCTGCTCTTCTAGGCC+AGG | 0.525188 | 2.4:-48695844 | MS.gene64420:intron |
| ATTGCTCAAGTAATCTGGCC+AGG | 0.525556 | 2.4:+48687642 | None:intergenic |
| CATTATTGGCTGATCGTCGT+CGG | 0.525611 | 2.4:+48681389 | None:intergenic |
| TTGAGAGCCATTGCACAGTA+CGG | 0.527044 | 2.4:+48693276 | None:intergenic |
| GAATTCCGAAGAGGAAGTTA+GGG | 0.527485 | 2.4:-48698041 | MS.gene64420:CDS |
| TCAATGTCTCGCAATTATCT+GGG | 0.528058 | 2.4:+48691413 | None:intergenic |
| TCATTGTTCATCTGAGTTTG+GGG | 0.529566 | 2.4:+48681875 | None:intergenic |
| CACATTCAAAACGGAGGGAA+AGG | 0.531936 | 2.4:-48682069 | MS.gene64420:CDS |
| TATACCTGGCCTAGAAGAGC+AGG | 0.532144 | 2.4:+48695840 | None:intergenic |
| GACAAAACAAAGAGAAAAGG+AGG | 0.534666 | 2.4:-48696296 | MS.gene64420:CDS |
| AATGGCGTCGGTTTATATAC+CGG | 0.536352 | 2.4:-48698068 | MS.gene64420:CDS |
| TCAGCTGTTGGAATTAGGAA+AGG | 0.536484 | 2.4:-48693333 | MS.gene64420:intron |
| AGCTAATGCGAGAAGACCGT+GGG | 0.536949 | 2.4:+48681841 | None:intergenic |
| GGGGCTTACTATAGCTACCT+TGG | 0.537951 | 2.4:-48696328 | MS.gene64420:CDS |
| GAGCGAGTGATGCCACTGAC+GGG | 0.541714 | 2.4:-48686174 | MS.gene64420:CDS |
| TGAGAGCCATTGCACAGTAC+GGG | 0.544473 | 2.4:+48693277 | None:intergenic |
| AGAATATCAGAAGCATCCCT+TGG | 0.546018 | 2.4:+48698001 | None:intergenic |
| ATTATCTATGCTGGGTGAGT+TGG | 0.549414 | 2.4:-48686242 | MS.gene64420:CDS |
| GAGAAGAGACATGAAGATGA+TGG | 0.549944 | 2.4:-48681300 | MS.gene64420:CDS |
| TTGGAGGAAGGATCTAGTCC+AGG | 0.550403 | 2.4:-48696567 | MS.gene64420:intron |
| AAATCCATGAATATGTAGGT+TGG | 0.551401 | 2.4:+48683439 | None:intergenic |
| TTTCACGACCTTGAAAGTAA+TGG | 0.551445 | 2.4:-48687710 | MS.gene64420:CDS |
| GCAGAGGGAGTACTTCAAGC+AGG | 0.552092 | 2.4:-48696616 | MS.gene64420:intron |
| TCGTCAGGTTGCATTGGCTG+AGG | 0.552322 | 2.4:-48683297 | MS.gene64420:CDS |
| TTAGGTTAATGATGCCCTGA+AGG | 0.552937 | 2.4:-48686287 | MS.gene64420:intron |
| TGAAGGCAAAAGAAACTCTC+CGG | 0.554640 | 2.4:-48686198 | MS.gene64420:CDS |
| ATTTGCATTTCTAGGAACAA+TGG | 0.555331 | 2.4:-48682102 | MS.gene64420:intron |
| CTCACAAATACTTCTATACC+TGG | 0.556946 | 2.4:-48684383 | MS.gene64420:CDS |
| ACGACGATCAGCCAATAATG+AGG | 0.557882 | 2.4:-48681386 | MS.gene64420:CDS |
| ATTGCTATCTTAAATGCCCT+CGG | 0.560013 | 2.4:-48696349 | MS.gene64420:CDS |
| GAAGCATCACCTGGGCATCA+CGG | 0.560742 | 2.4:+48690172 | None:intergenic |
| AATATTACAATAAGGCATCA+AGG | 0.561837 | 2.4:-48696252 | MS.gene64420:CDS |
| TTGCATTGGCTGAGGAAGCA+CGG | 0.565516 | 2.4:-48683289 | MS.gene64420:CDS |
| TTCGGATGCAGATGATGAGC+CGG | 0.566484 | 2.4:-48681807 | MS.gene64420:intron |
| GCTAATTTATATGCTGCCAA+TGG | 0.567464 | 2.4:-48684802 | MS.gene64420:CDS |
| ACACATTAAGGTTTGATGCA+GGG | 0.567536 | 2.4:-48684279 | MS.gene64420:CDS |
| AAGAAGATTGACACTCATGT+TGG | 0.569285 | 2.4:-48683410 | MS.gene64420:CDS |
| AGAAGCTTCTGACCTTGCTA+TGG | 0.569338 | 2.4:+48693124 | None:intergenic |
| GCATACATATATGTTCAGCT+TGG | 0.569437 | 2.4:-48690246 | MS.gene64420:CDS |
| ATGGACTTGCGCTCTAACGA+AGG | 0.569767 | 2.4:-48693467 | MS.gene64420:intron |
| GTCATACCTTGAACAAGATT+AGG | 0.570382 | 2.4:+48687585 | None:intergenic |
| TAAAGCTGGGGTGTATTACA+TGG | 0.571200 | 2.4:-48692449 | MS.gene64420:CDS |
| AGGTGAGAGCAACGGTTGCA+GGG | 0.571421 | 2.4:-48683505 | MS.gene64420:CDS |
| TACTCATTTGGAAAAGGCGA+AGG | 0.575272 | 2.4:-48685923 | MS.gene64420:CDS |
| GTATTACATGGCATCTGTCA+AGG | 0.576232 | 2.4:-48692437 | MS.gene64420:CDS |
| TTGGCTTTCTTTCTTTAGCG+AGG | 0.577716 | 2.4:-48687792 | MS.gene64420:CDS |
| GATATGCATCAATGTAGTCT+GGG | 0.579999 | 2.4:+48686828 | None:intergenic |
| TCTCGCATTAGCTGGACTTG+AGG | 0.580974 | 2.4:-48681831 | MS.gene64420:CDS |
| TTAATCTCGATCAACTTCCA+AGG | 0.583866 | 2.4:-48698018 | MS.gene64420:CDS |
| GTCACCATGTTGAAGTACCA+TGG | 0.584109 | 2.4:-48687688 | MS.gene64420:CDS |
| ATATGAGTCCTTCCCGTCAG+TGG | 0.585495 | 2.4:+48686162 | None:intergenic |
| AGAGCAGCACACATTCAAAA+CGG | 0.586172 | 2.4:-48682078 | MS.gene64420:CDS |
| GAGGCTAGCGGCTATTGCAA+AGG | 0.587953 | 2.4:-48686804 | MS.gene64420:CDS |
| CCTCAACCATTAGCAGGCGG+AGG | 0.588394 | 2.4:-48681428 | MS.gene64420:CDS |
| TGTAGTTTGAGGGTGCCAAA+TGG | 0.590613 | 2.4:+48684299 | None:intergenic |
| GAAAATGGTGCAACAACAGG+AGG | 0.592190 | 2.4:-48683110 | MS.gene64420:CDS |
| TAGCGGCTATTGCAAAGGCT+CGG | 0.592892 | 2.4:-48686799 | MS.gene64420:CDS |
| AGAACAGTCTGTTGATATGG+AGG | 0.593278 | 2.4:-48681346 | MS.gene64420:CDS |
| CCCATTATGAAGCGGAACAG+TGG | 0.594005 | 2.4:-48684354 | MS.gene64420:CDS |
| TGTTGGAATTAGGAAAGGAA+TGG | 0.596800 | 2.4:-48693328 | MS.gene64420:CDS |
| AGCACGCTCTTACCATAGCA+AGG | 0.597396 | 2.4:-48693136 | MS.gene64420:intron |
| AGAGCGAGTGATGCCACTGA+CGG | 0.599695 | 2.4:-48686175 | MS.gene64420:CDS |
| GAGTGATGCCACTGACGGGA+AGG | 0.603327 | 2.4:-48686170 | MS.gene64420:CDS |
| CCAAATGCATTATCTATGCT+GGG | 0.603589 | 2.4:-48686250 | MS.gene64420:CDS |
| CATGCACGAGCCCTCTACTT+GGG | 0.603881 | 2.4:-48696224 | MS.gene64420:CDS |
| ATCCAGTGCAGCTCCTGTGT+CGG | 0.604801 | 2.4:+48688181 | None:intergenic |
| GGTGTCCTTCAGTTTGAAAG+GGG | 0.610316 | 2.4:-48687952 | MS.gene64420:CDS |
| ACTGAATCAATCAATGGCGT+CGG | 0.614055 | 2.4:-48698080 | None:intergenic |
| CGATCTTTGGCTCATTATCG+CGG | 0.614294 | 2.4:-48697948 | MS.gene64420:intron |
| TTCCAAGTCTCACAGCTGCA+GGG | 0.614463 | 2.4:+48693690 | None:intergenic |
| CAGCACACATTCAAAACGGA+GGG | 0.615167 | 2.4:-48682074 | MS.gene64420:CDS |
| TCACCATGTTGAAGTACCAT+GGG | 0.615184 | 2.4:-48687687 | MS.gene64420:CDS |
| GTTGATATGGAGGAGAGTGA+TGG | 0.616014 | 2.4:-48681336 | MS.gene64420:CDS |
| GCTATACCCGTACTGTGCAA+TGG | 0.616669 | 2.4:-48693283 | MS.gene64420:CDS |
| GATGGATGAACAGGAAATGG+AGG | 0.616780 | 2.4:-48681930 | MS.gene64420:CDS |
| GGCTCGTACCCATTATGAAG+CGG | 0.617210 | 2.4:-48684362 | MS.gene64420:CDS |
| TCAGCTTGGTCAAACCGACA+AGG | 0.623453 | 2.4:-48690232 | MS.gene64420:CDS |
| TAATCTCGATCAACTTCCAA+GGG | 0.624605 | 2.4:-48698017 | MS.gene64420:CDS |
| GTTTGAGGGTGCCAAATGGA+TGG | 0.627665 | 2.4:+48684303 | None:intergenic |
| GAAAGGTCTGATGATGAAGA+CGG | 0.630129 | 2.4:-48682052 | MS.gene64420:CDS |
| CAGAGGGAGTACTTCAAGCA+GGG | 0.632688 | 2.4:-48696615 | MS.gene64420:CDS |
| TGCTATCTTAAATGCCCTCG+GGG | 0.634283 | 2.4:-48696347 | MS.gene64420:CDS |
| TGCAGTATCAGAATTGCTTG+CGG | 0.640197 | 2.4:-48684426 | MS.gene64420:intron |
| AAACACGCTCAAATGCCTGT+CGG | 0.642330 | 2.4:+48693627 | None:intergenic |
| ATATGCTGCCAATGGTGCTG+CGG | 0.642461 | 2.4:-48684794 | MS.gene64420:CDS |
| AGCATCACCTGGGCATCACG+GGG | 0.646234 | 2.4:+48690174 | None:intergenic |
| CAGCTTGGTCAAACCGACAA+GGG | 0.647963 | 2.4:-48690231 | MS.gene64420:CDS |
| GCGAATCAGAAAATCTTCCA+CGG | 0.648266 | 2.4:+48694518 | None:intergenic |
| GGTCTGATGATGAAGACGGT+GGG | 0.650047 | 2.4:-48682048 | MS.gene64420:CDS |
| CGCCTGCTAATGGTTGAGGG+AGG | 0.651946 | 2.4:+48681432 | None:intergenic |
| CAGCTAATGCGAGAAGACCG+TGG | 0.652542 | 2.4:+48681840 | None:intergenic |
| AGTCACAGTACTCTTTAACC+TGG | 0.656054 | 2.4:-48687660 | MS.gene64420:CDS |
| CTCCCTCAACCATTAGCAGG+CGG | 0.656807 | 2.4:-48681431 | MS.gene64420:CDS |
| AGGTCTGATGATGAAGACGG+TGG | 0.660835 | 2.4:-48682049 | MS.gene64420:CDS |
| TATCCCATGGTACTTCAACA+TGG | 0.661108 | 2.4:+48687684 | None:intergenic |
| TGATGCATATCTGAGGCTAG+CGG | 0.669165 | 2.4:-48686816 | MS.gene64420:CDS |
| TGAAGATGATGGCAGTGATG+AGG | 0.670943 | 2.4:-48681289 | MS.gene64420:CDS |
| TAAGGAAACACAAATTCATG+GGG | 0.672819 | 2.4:+48692403 | None:intergenic |
| GCAGCACACATTCAAAACGG+AGG | 0.672994 | 2.4:-48682075 | MS.gene64420:CDS |
| ACCGGTTCAGAATTCCGAAG+AGG | 0.674129 | 2.4:-48698050 | MS.gene64420:CDS |
| ATAATGAGCCAAAGATCGAG+AGG | 0.675955 | 2.4:+48697953 | None:intergenic |
| AACTCAGATGAACAATGATG+AGG | 0.677871 | 2.4:-48681870 | MS.gene64420:CDS |
| ACTACATTGATGCATATCTG+AGG | 0.679632 | 2.4:-48686823 | MS.gene64420:CDS |
| CAATGACACAGAAGAAACAG+AGG | 0.683420 | 2.4:-48681960 | MS.gene64420:CDS |
| ATGCTGATATTAGATACGAG+AGG | 0.684728 | 2.4:-48696372 | MS.gene64420:CDS |
| CAGGTTCAAGAAGCTGCCAG+TGG | 0.687409 | 2.4:-48684635 | MS.gene64420:CDS |
| AGTACTGTGACTTTATCCCA+TGG | 0.687951 | 2.4:+48687671 | None:intergenic |
| GATGGACAGAAGAAAGCATG+AGG | 0.688027 | 2.4:-48683140 | MS.gene64420:CDS |
| GCATGTGTTGAGTTCAACCG+TGG | 0.688407 | 2.4:-48694535 | MS.gene64420:CDS |
| GTAGCTATAGTAAGCCCCGA+GGG | 0.688854 | 2.4:+48696333 | None:intergenic |
| TAAATGTTAGGTGAGAGCAA+CGG | 0.691545 | 2.4:-48683513 | MS.gene64420:intron |
| CAACCCTTCAAAAGGCAAAG+CGG | 0.696853 | 2.4:-48684231 | MS.gene64420:CDS |
| GCTTGATCCAGAAAATGTCG+AGG | 0.707537 | 2.4:-48693510 | MS.gene64420:CDS |
| AATGATGAGGAAAATCCCCA+CGG | 0.716014 | 2.4:-48681857 | MS.gene64420:CDS |
| TGTTGACATGAACTCCAGAG+AGG | 0.734294 | 2.4:-48681900 | MS.gene64420:CDS |
| GGTAGCTATAGTAAGCCCCG+AGG | 0.773062 | 2.4:+48696332 | None:intergenic |
| GCTAATGCGAGAAGACCGTG+GGG | 0.786540 | 2.4:+48681842 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 48681281 | 48698089 | 48681281 | ID=MS.gene64420 |
| chr2.4 | mRNA | 48681281 | 48698089 | 48681281 | ID=MS.gene64420.t1;Parent=MS.gene64420 |
| chr2.4 | exon | 48697949 | 48698089 | 48697949 | ID=MS.gene64420.t1.exon1;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48697949 | 48698089 | 48697949 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48696568 | 48696634 | 48696568 | ID=MS.gene64420.t1.exon2;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48696568 | 48696634 | 48696568 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48696215 | 48696409 | 48696215 | ID=MS.gene64420.t1.exon3;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48696215 | 48696409 | 48696215 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48695845 | 48695945 | 48695845 | ID=MS.gene64420.t1.exon4;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48695845 | 48695945 | 48695845 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48694504 | 48694557 | 48694504 | ID=MS.gene64420.t1.exon5;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48694504 | 48694557 | 48694504 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48693622 | 48693738 | 48693622 | ID=MS.gene64420.t1.exon6;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48693622 | 48693738 | 48693622 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48693468 | 48693531 | 48693468 | ID=MS.gene64420.t1.exon7;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48693468 | 48693531 | 48693468 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48693137 | 48693351 | 48693137 | ID=MS.gene64420.t1.exon8;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48693137 | 48693351 | 48693137 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48692398 | 48692482 | 48692398 | ID=MS.gene64420.t1.exon9;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48692398 | 48692482 | 48692398 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48691411 | 48691511 | 48691411 | ID=MS.gene64420.t1.exon10;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48691411 | 48691511 | 48691411 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48690182 | 48690274 | 48690182 | ID=MS.gene64420.t1.exon11;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48690182 | 48690274 | 48690182 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48688169 | 48688237 | 48688169 | ID=MS.gene64420.t1.exon12;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48688169 | 48688237 | 48688169 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48687942 | 48688034 | 48687942 | ID=MS.gene64420.t1.exon13;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48687942 | 48688034 | 48687942 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48687592 | 48687855 | 48687592 | ID=MS.gene64420.t1.exon14;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48687592 | 48687855 | 48687592 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48686772 | 48686852 | 48686772 | ID=MS.gene64420.t1.exon15;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48686772 | 48686852 | 48686772 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48686147 | 48686305 | 48686147 | ID=MS.gene64420.t1.exon16;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48686147 | 48686305 | 48686147 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48685909 | 48686004 | 48685909 | ID=MS.gene64420.t1.exon17;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48685909 | 48686004 | 48685909 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48684741 | 48684842 | 48684741 | ID=MS.gene64420.t1.exon18;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48684741 | 48684842 | 48684741 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48684547 | 48684654 | 48684547 | ID=MS.gene64420.t1.exon19;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48684547 | 48684654 | 48684547 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48684219 | 48684443 | 48684219 | ID=MS.gene64420.t1.exon20;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48684219 | 48684443 | 48684219 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48683259 | 48683525 | 48683259 | ID=MS.gene64420.t1.exon21;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48683259 | 48683525 | 48683259 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48683090 | 48683161 | 48683090 | ID=MS.gene64420.t1.exon22;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48683090 | 48683161 | 48683090 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48681808 | 48682110 | 48681808 | ID=MS.gene64420.t1.exon23;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48681808 | 48682110 | 48681808 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| chr2.4 | exon | 48681281 | 48681460 | 48681281 | ID=MS.gene64420.t1.exon24;Parent=MS.gene64420.t1 |
| chr2.4 | CDS | 48681281 | 48681460 | 48681281 | ID=cds.MS.gene64420.t1;Parent=MS.gene64420.t1 |
| Gene Sequence |
| Protein sequence |
