Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65275.t1 | XP_013456039.1 | 98.8 | 341 | 4 | 0 | 1 | 341 | 1 | 341 | 3.50E-195 | 690.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65275.t1 | Q9LZG0 | 83.4 | 337 | 56 | 0 | 4 | 340 | 8 | 344 | 1.1e-168 | 594.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65275.t1 | A0A072UW36 | 98.8 | 341 | 4 | 0 | 1 | 341 | 1 | 341 | 2.6e-195 | 690.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85276 | MS.gene65275 | PPI |
| MS.gene032177 | MS.gene65275 | PPI |
| MS.gene65275 | MS.gene003877 | PPI |
| MS.gene056386 | MS.gene65275 | PPI |
| MS.gene65275 | MS.gene052011 | PPI |
| MS.gene98726 | MS.gene65275 | PPI |
| MS.gene28335 | MS.gene65275 | PPI |
| MS.gene46881 | MS.gene65275 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65275.t1 | MTR_4g461070 | 98.827 | 341 | 4 | 0 | 1 | 341 | 1 | 341 | 0.0 | 702 |
| MS.gene65275.t1 | MTR_1g064060 | 96.188 | 341 | 13 | 0 | 1 | 341 | 1 | 341 | 0.0 | 685 |
| MS.gene65275.t1 | MTR_1g064060 | 94.983 | 299 | 15 | 0 | 1 | 299 | 1 | 299 | 0.0 | 593 |
| MS.gene65275.t1 | MTR_3g112040 | 25.994 | 327 | 210 | 15 | 12 | 326 | 27 | 333 | 3.89e-13 | 70.1 |
| MS.gene65275.t1 | MTR_3g081400 | 63.636 | 44 | 13 | 1 | 263 | 306 | 34 | 74 | 1.74e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65275.t1 | AT5G03300 | 83.383 | 337 | 56 | 0 | 4 | 340 | 8 | 344 | 0.0 | 603 |
| MS.gene65275.t1 | AT3G09820 | 83.728 | 338 | 55 | 0 | 3 | 340 | 6 | 343 | 0.0 | 600 |
| MS.gene65275.t1 | AT3G09820 | 85.034 | 294 | 44 | 0 | 47 | 340 | 8 | 301 | 0.0 | 529 |
| MS.gene65275.t1 | AT5G03300 | 83.849 | 291 | 47 | 0 | 50 | 340 | 1 | 291 | 0.0 | 524 |
| MS.gene65275.t1 | AT5G03300 | 83.849 | 291 | 47 | 0 | 50 | 340 | 1 | 291 | 0.0 | 524 |
| MS.gene65275.t1 | AT1G19600 | 26.205 | 332 | 216 | 14 | 14 | 336 | 23 | 334 | 9.40e-15 | 74.7 |
| MS.gene65275.t1 | AT4G27600 | 23.270 | 318 | 205 | 11 | 7 | 308 | 123 | 417 | 9.74e-11 | 63.2 |
Find 90 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTATATGGACTATGTATT+TGG | 0.205120 | 4.3:-41403830 | MS.gene65275:CDS |
| ACCAGCTTGTTTAGAGTTCT+TGG | 0.208302 | 4.3:+41404629 | None:intergenic |
| ATTTGAAGAAACCCGAAAAT+TGG | 0.225304 | 4.3:-41404280 | MS.gene65275:CDS |
| TTCCTGATGCCTTTGGCAAC+TGG | 0.236821 | 4.3:+41403636 | None:intergenic |
| CATTCTGGGATTCAGGTATA+TGG | 0.238438 | 4.3:-41403843 | MS.gene65275:intron |
| GCCAAATATTTCTATATTGC+TGG | 0.248568 | 4.3:-41404148 | MS.gene65275:CDS |
| CTTGAAGAACTCACATATAA+AGG | 0.274936 | 4.3:+41403956 | None:intergenic |
| AATGTACTCCACGTTATATT+TGG | 0.281042 | 4.3:+41404957 | None:intergenic |
| TCCAGCAATATAGAAATATT+TGG | 0.289493 | 4.3:+41404147 | None:intergenic |
| TATTGAAAATCAGGCTTCTC+TGG | 0.291194 | 4.3:+41403277 | None:intergenic |
| TCTTTCGGTAATAGAATTAC+AGG | 0.317695 | 4.3:+41403536 | None:intergenic |
| GCTTTGGAAGGTGTTCTTCT+TGG | 0.324177 | 4.3:-41406066 | MS.gene65275:CDS |
| AGAATCACTTATTGAAAATC+AGG | 0.327042 | 4.3:+41403268 | None:intergenic |
| AGCAACTAATTGAATGGATT+CGG | 0.333100 | 4.3:+41404105 | None:intergenic |
| TAGTGGTTGCTTCAAGTTCC+CGG | 0.340792 | 4.3:-41404705 | MS.gene65275:CDS |
| GGAAGGTGTTCTTCTTGGTA+TGG | 0.348012 | 4.3:-41406061 | MS.gene65275:CDS |
| GTATCAACTAATTTCTCTTT+CGG | 0.348297 | 4.3:+41403521 | None:intergenic |
| GCAACTAATTGAATGGATTC+GGG | 0.354886 | 4.3:+41404106 | None:intergenic |
| TGGAGGATTTCTTTCACAAT+TGG | 0.357365 | 4.3:-41403383 | MS.gene65275:CDS |
| GCTCTCACACATTCTTCAAT+AGG | 0.364927 | 4.3:+41403349 | None:intergenic |
| TCCTGATGCCTTTGGCAACT+GGG | 0.376131 | 4.3:+41403637 | None:intergenic |
| CGAGAATAGCATTGTTCAAC+TGG | 0.377377 | 4.3:+41405824 | None:intergenic |
| TCTCGCATCAACAATGGCTT+TGG | 0.379448 | 4.3:-41406082 | None:intergenic |
| TTGTGTGTTCCTGATGCCTT+TGG | 0.383545 | 4.3:+41403629 | None:intergenic |
| TGCATTGGGAAGGACAAGTT+TGG | 0.384984 | 4.3:-41404663 | MS.gene65275:CDS |
| AAACCCGAAAATTGGGCATT+AGG | 0.397247 | 4.3:-41404272 | MS.gene65275:intron |
| CTTTATATGTGAGTTCTTCA+AGG | 0.401114 | 4.3:-41403955 | MS.gene65275:CDS |
| TTTGAAGAAACCCGAAAATT+GGG | 0.414245 | 4.3:-41404279 | MS.gene65275:CDS |
| AGCTATCTCCTCGACATTAT+CGG | 0.414959 | 4.3:+41403670 | None:intergenic |
| ACTTGTGCTGTTTGTGTCGT+TGG | 0.426149 | 4.3:-41404477 | MS.gene65275:CDS |
| ACCGATGTAACTAGTGGCTC+CGG | 0.432188 | 4.3:+41404686 | None:intergenic |
| CTAGTTACATCGGTTGCATT+GGG | 0.448977 | 4.3:-41404677 | MS.gene65275:CDS |
| TTTGTAGGAGATGCCTTTGT+TGG | 0.450937 | 4.3:-41403403 | MS.gene65275:intron |
| ACTAGTTACATCGGTTGCAT+TGG | 0.454698 | 4.3:-41404678 | MS.gene65275:CDS |
| TTGAAGAACTCACATATAAA+GGG | 0.455056 | 4.3:+41403957 | None:intergenic |
| GTAGGAGATGCCTTTGTTGG+AGG | 0.455368 | 4.3:-41403400 | MS.gene65275:intron |
| TCCCAGTTGCCAAAGGCATC+AGG | 0.461050 | 4.3:-41403638 | MS.gene65275:CDS |
| ATTCTTCAATAGGTTTCTCC+TGG | 0.464884 | 4.3:+41403359 | None:intergenic |
| GTGCTACTCAGAATTCAATC+AGG | 0.465309 | 4.3:-41404833 | MS.gene65275:CDS |
| GAAGGTGTTCTTCTTGGTAT+GGG | 0.471521 | 4.3:-41406060 | MS.gene65275:CDS |
| GAATTCAATCAGGGTTGCTC+AGG | 0.472160 | 4.3:-41404823 | MS.gene65275:intron |
| TAGGGCATTACCTGCTCCAT+TGG | 0.477788 | 4.3:+41403499 | None:intergenic |
| ATGTTCAGCAACTAATTGAA+TGG | 0.478120 | 4.3:+41404099 | None:intergenic |
| GCAATTTGCAGCTGATAAGT+TGG | 0.489440 | 4.3:+41404316 | None:intergenic |
| CTTCTCTGGGTAAGTGCAGC+CGG | 0.491076 | 4.3:+41403291 | None:intergenic |
| ATTGAAAATCAGGCTTCTCT+GGG | 0.503018 | 4.3:+41403278 | None:intergenic |
| CCCGTGTGTGTTGCTCAAGA+TGG | 0.504240 | 4.3:-41403575 | MS.gene65275:CDS |
| ATTTCTTTCACAATTGGTCC+AGG | 0.505204 | 4.3:-41403377 | MS.gene65275:CDS |
| AATGTTATCATTCAAAGGTC+CGG | 0.511083 | 4.3:-41403310 | MS.gene65275:CDS |
| TATAACGTGGAGTACATTGC+TGG | 0.514705 | 4.3:-41404952 | MS.gene65275:CDS |
| ATCAGCACCCTGTGTGATAA+CGG | 0.517329 | 4.3:+41403598 | None:intergenic |
| TACGGAAGAGCTTTCTCCTG+TGG | 0.523507 | 4.3:+41403930 | None:intergenic |
| AGGCATCAGGAACACACAAA+AGG | 0.529385 | 4.3:-41403625 | MS.gene65275:CDS |
| TTAGTTGATACCAATGGAGC+AGG | 0.536544 | 4.3:-41403509 | MS.gene65275:intron |
| GAGAAATTAGTTGATACCAA+TGG | 0.538760 | 4.3:-41403515 | MS.gene65275:CDS |
| TTTGTGTCGTTGGTGGTGAA+AGG | 0.544058 | 4.3:-41404467 | MS.gene65275:intron |
| TGTGCTGTTTGTGTCGTTGG+TGG | 0.549931 | 4.3:-41404474 | MS.gene65275:CDS |
| CAGCAAATGTTATCATTCAA+AGG | 0.551386 | 4.3:-41403315 | MS.gene65275:CDS |
| ATTGAAGAATGTGTGAGAGC+TGG | 0.554569 | 4.3:-41403346 | MS.gene65275:CDS |
| CCGTGTGTGTTGCTCAAGAT+GGG | 0.565237 | 4.3:-41403574 | MS.gene65275:CDS |
| CCCATCTTGAGCAACACACA+CGG | 0.565436 | 4.3:+41403574 | None:intergenic |
| GACAGCAGAAATGTCGAGAA+GGG | 0.565725 | 4.3:+41406032 | None:intergenic |
| CGACAGCAGAAATGTCGAGA+AGG | 0.566798 | 4.3:+41406031 | None:intergenic |
| TGAGTTCTTCAAGGATCCAC+AGG | 0.569756 | 4.3:-41403946 | MS.gene65275:CDS |
| TTGAAGAATGTGTGAGAGCT+GGG | 0.569874 | 4.3:-41403345 | MS.gene65275:CDS |
| CACATATAAAGGGTGCAGAA+AGG | 0.573702 | 4.3:+41403967 | None:intergenic |
| GAAGACGAGAATACACCTAC+AGG | 0.574426 | 4.3:-41404501 | MS.gene65275:CDS |
| ACCAAGAACTCTAAACAAGC+TGG | 0.574572 | 4.3:-41404630 | MS.gene65275:CDS |
| TGAAAGAAATCCTCCAACAA+AGG | 0.578951 | 4.3:+41403390 | None:intergenic |
| CCGATGTAACTAGTGGCTCC+GGG | 0.591002 | 4.3:+41404687 | None:intergenic |
| CCCGGAGCCACTAGTTACAT+CGG | 0.598586 | 4.3:-41404687 | MS.gene65275:CDS |
| TTACATCGGTTGCATTGGGA+AGG | 0.601422 | 4.3:-41404673 | MS.gene65275:CDS |
| CTTTCGGTAATAGAATTACA+GGG | 0.609635 | 4.3:+41403537 | None:intergenic |
| GCATCAACAATGGCTTTGGA+AGG | 0.614210 | 4.3:-41406078 | None:intergenic |
| CAAGATATCCCAGTTGCCAA+AGG | 0.619346 | 4.3:-41403645 | MS.gene65275:CDS |
| AAGGATTACCGTTATCACAC+AGG | 0.620728 | 4.3:-41403606 | MS.gene65275:CDS |
| AACTAATTGAATGGATTCGG+GGG | 0.625445 | 4.3:+41404108 | None:intergenic |
| CCATCTTGAGCAACACACAC+GGG | 0.628074 | 4.3:+41403575 | None:intergenic |
| TGCTACTCAGAATTCAATCA+GGG | 0.630239 | 4.3:-41404832 | MS.gene65275:CDS |
| TGGGAAGGACAAGTTTGGCG+AGG | 0.639413 | 4.3:-41404658 | MS.gene65275:CDS |
| TTCGAAAGTTCGTGGCTGGG+AGG | 0.641794 | 4.3:-41403783 | MS.gene65275:intron |
| CAACTAATTGAATGGATTCG+GGG | 0.644425 | 4.3:+41404107 | None:intergenic |
| ACATGCAGCTGCAAATAACA+AGG | 0.645685 | 4.3:-41404080 | MS.gene65275:intron |
| ACAGCAGAAATGTCGAGAAG+GGG | 0.652637 | 4.3:+41406033 | None:intergenic |
| CAAACAGCACAAGTTCCTGT+AGG | 0.659898 | 4.3:+41404486 | None:intergenic |
| TGACCAGACCGATAATGTCG+AGG | 0.675199 | 4.3:-41403678 | MS.gene65275:intron |
| AATGCAACCGATGTAACTAG+TGG | 0.675466 | 4.3:+41404680 | None:intergenic |
| AGGATTACCGTTATCACACA+GGG | 0.685783 | 4.3:-41403605 | MS.gene65275:CDS |
| AACGTGGAGTACATTGCTGG+AGG | 0.692110 | 4.3:-41404949 | MS.gene65275:intron |
| AATGACTGCCAAATATAACG+TGG | 0.704099 | 4.3:-41404965 | MS.gene65275:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTTATTTGAATTTGA+CGG | + | chr4.3:41405452-41405471 | None:intergenic | 10.0% |
| !!! | TTTTAAATAAATAGTTGAAA+AGG | - | chr4.3:41405175-41405194 | MS.gene65275:intron | 10.0% |
| !!! | TTTTTTCTTATTGATTTTTA+AGG | - | chr4.3:41405474-41405493 | MS.gene65275:intron | 10.0% |
| !! | AATTAACTTATTTAACAACT+AGG | - | chr4.3:41404810-41404829 | MS.gene65275:intron | 15.0% |
| !!! | ATTTTGATGTAATTATTTCT+TGG | - | chr4.3:41403832-41403851 | MS.gene65275:intron | 15.0% |
| !!! | CACTTTTCATTTTTAAATTA+CGG | - | chr4.3:41403894-41403913 | MS.gene65275:intron | 15.0% |
| !!! | TAATTTTTTTTCTTTTTTGC+AGG | - | chr4.3:41404490-41404509 | MS.gene65275:CDS | 15.0% |
| !!! | TACTTTTCCTTTTTAAATTA+CGG | + | chr4.3:41404023-41404042 | None:intergenic | 15.0% |
| !!! | TCACTTTCTAAAAAAAATAT+CGG | + | chr4.3:41404162-41404181 | None:intergenic | 15.0% |
| !!! | TTATTTCATTTTGTTATTTG+AGG | - | chr4.3:41403747-41403766 | MS.gene65275:intron | 15.0% |
| !! | AAATAAGTTAATTTCAGAAG+TGG | + | chr4.3:41404803-41404822 | None:intergenic | 20.0% |
| !! | ATATAGTCCGTAATTTAAAA+AGG | - | chr4.3:41404013-41404032 | MS.gene65275:intron | 20.0% |
| !! | TTTAGTTAACATGCTAATTT+AGG | - | chr4.3:41403601-41403620 | MS.gene65275:CDS | 20.0% |
| !!! | ATTCATTTTTTTTACGTCTT+TGG | - | chr4.3:41404944-41404963 | MS.gene65275:intron | 20.0% |
| !!! | ATTTTGGTAGTTTTAGATAT+TGG | - | chr4.3:41403710-41403729 | MS.gene65275:intron | 20.0% |
| !!! | TTCTTTTGTTTTGTTTTTGT+AGG | - | chr4.3:41405927-41405946 | MS.gene65275:intron | 20.0% |
| !!! | TTTTATTTAATAACTCGTCT+TGG | - | chr4.3:41405632-41405651 | MS.gene65275:intron | 20.0% |
| ! | AAAAAGATCCTGAATTAAGA+GGG | + | chr4.3:41405101-41405120 | None:intergenic | 25.0% |
| ! | AAGAAGAAGAAGAAGAATAA+TGG | - | chr4.3:41403420-41403439 | MS.gene65275:intron | 25.0% |
| ! | AATGTAAAATCAAAACTGCA+AGG | + | chr4.3:41405614-41405633 | None:intergenic | 25.0% |
| ! | ATCAAATACTTCTAGTAGAA+AGG | + | chr4.3:41405317-41405336 | None:intergenic | 25.0% |
| ! | ATGTAAAATCAAAACTGCAA+GGG | + | chr4.3:41405613-41405632 | None:intergenic | 25.0% |
| ! | CATAGATACAAAAACACTAA+GGG | + | chr4.3:41404090-41404109 | None:intergenic | 25.0% |
| ! | GTATCAACTAATTTCTCTTT+CGG | + | chr4.3:41405827-41405846 | None:intergenic | 25.0% |
| ! | TCATAGATACAAAAACACTA+AGG | + | chr4.3:41404091-41404110 | None:intergenic | 25.0% |
| ! | TCATCAAAATGACTAACATT+TGG | - | chr4.3:41405141-41405160 | MS.gene65275:intron | 25.0% |
| ! | TCCAGCAATATAGAAATATT+TGG | + | chr4.3:41405201-41405220 | None:intergenic | 25.0% |
| ! | TCTAAAAAAAATATCGGTGT+CGG | + | chr4.3:41404156-41404175 | None:intergenic | 25.0% |
| ! | TTGAAGAACTCACATATAAA+GGG | + | chr4.3:41405391-41405410 | None:intergenic | 25.0% |
| !! | TCAGTTTAGCTTATTTACTT+TGG | - | chr4.3:41403777-41403796 | MS.gene65275:intron | 25.0% |
| !!! | ATTTTTAAGGATTTGCATTC+TGG | - | chr4.3:41405487-41405506 | MS.gene65275:intron | 25.0% |
| !!! | TTTTTAAGGATTTGCATTCT+GGG | - | chr4.3:41405488-41405507 | MS.gene65275:intron | 25.0% |
| AATGTACTCCACGTTATATT+TGG | + | chr4.3:41404391-41404410 | None:intergenic | 30.0% | |
| AATGTTATCATTCAAAGGTC+CGG | - | chr4.3:41406035-41406054 | MS.gene65275:CDS | 30.0% | |
| ACACACCCTAAATAGAAAAA+TGG | + | chr4.3:41403858-41403877 | None:intergenic | 30.0% | |
| ATACTTCTAGTAGAAAGGTT+AGG | + | chr4.3:41405312-41405331 | None:intergenic | 30.0% | |
| ATGTAATTACAAGTGTCAGT+CGG | - | chr4.3:41404191-41404210 | MS.gene65275:intron | 30.0% | |
| ATGTTCAGCAACTAATTGAA+TGG | + | chr4.3:41405249-41405268 | None:intergenic | 30.0% | |
| ATTTGAAGAAACCCGAAAAT+TGG | - | chr4.3:41405065-41405084 | MS.gene65275:intron | 30.0% | |
| CAGCAAATGTTATCATTCAA+AGG | - | chr4.3:41406030-41406049 | MS.gene65275:CDS | 30.0% | |
| CTTGAAGAACTCACATATAA+AGG | + | chr4.3:41405392-41405411 | None:intergenic | 30.0% | |
| CTTTATATGTGAGTTCTTCA+AGG | - | chr4.3:41405390-41405409 | MS.gene65275:intron | 30.0% | |
| CTTTCGGTAATAGAATTACA+GGG | + | chr4.3:41405811-41405830 | None:intergenic | 30.0% | |
| GAAAAAGATCCTGAATTAAG+AGG | + | chr4.3:41405102-41405121 | None:intergenic | 30.0% | |
| TATGATTCCACAATCATTTC+AGG | - | chr4.3:41404349-41404368 | MS.gene65275:intron | 30.0% | |
| TCTTTCGGTAATAGAATTAC+AGG | + | chr4.3:41405812-41405831 | None:intergenic | 30.0% | |
| TTTCAGATTATTGCGTTTCT+GGG | - | chr4.3:41404437-41404456 | MS.gene65275:intron | 30.0% | |
| TTTGAAGAAACCCGAAAATT+GGG | - | chr4.3:41405066-41405085 | MS.gene65275:intron | 30.0% | |
| TTTGTATTTGCTTCTTGTAG+TGG | - | chr4.3:41404623-41404642 | MS.gene65275:CDS | 30.0% | |
| ! | AAAAACACTAAGGGTTTGTT+TGG | + | chr4.3:41404081-41404100 | None:intergenic | 30.0% |
| ! | AATTTCAGAAGTGGATTCTA+CGG | + | chr4.3:41404794-41404813 | None:intergenic | 30.0% |
| ! | AGCAACTAATTGAATGGATT+CGG | + | chr4.3:41405243-41405262 | None:intergenic | 30.0% |
| ! | AGGTATATGGACTATGTATT+TGG | - | chr4.3:41405515-41405534 | MS.gene65275:intron | 30.0% |
| ! | GAGAAATTAGTTGATACCAA+TGG | - | chr4.3:41405830-41405849 | MS.gene65275:CDS | 30.0% |
| ! | GCCAAATATTTCTATATTGC+TGG | - | chr4.3:41405197-41405216 | MS.gene65275:intron | 30.0% |
| ! | TTTTCAGATTATTGCGTTTC+TGG | - | chr4.3:41404436-41404455 | MS.gene65275:intron | 30.0% |
| !! | TTTTCTATTTAGGGTGTGTT+TGG | - | chr4.3:41403859-41403878 | MS.gene65275:intron | 30.0% |
| !! | TTTTGGGCATTTAAAACACA+AGG | + | chr4.3:41404921-41404940 | None:intergenic | 30.0% |
| !!! | CTTGGCCATTTTTCTATTTA+GGG | - | chr4.3:41403850-41403869 | MS.gene65275:intron | 30.0% |
| !!! | TCTTGGCCATTTTTCTATTT+AGG | - | chr4.3:41403849-41403868 | MS.gene65275:intron | 30.0% |
| AAAAGAAGGTTTCAAAGCAC+TGG | + | chr4.3:41404985-41405004 | None:intergenic | 35.0% | |
| AATGACTGCCAAATATAACG+TGG | - | chr4.3:41404380-41404399 | MS.gene65275:intron | 35.0% | |
| ATTAGGTACCCTCTTAATTC+AGG | - | chr4.3:41405090-41405109 | MS.gene65275:intron | 35.0% | |
| ATTCCCCTTCAAAAAGCAAT+AGG | + | chr4.3:41405868-41405887 | None:intergenic | 35.0% | |
| ATTCTTCAATAGGTTTCTCC+TGG | + | chr4.3:41405989-41406008 | None:intergenic | 35.0% | |
| ATTGAAAATCAGGCTTCTCT+GGG | + | chr4.3:41406070-41406089 | None:intergenic | 35.0% | |
| ATTTCTTTCACAATTGGTCC+AGG | - | chr4.3:41405968-41405987 | MS.gene65275:intron | 35.0% | |
| CATCATACCTGAAATGATTG+TGG | + | chr4.3:41404359-41404378 | None:intergenic | 35.0% | |
| CATCATGAAAAACTGCACAA+GGG | + | chr4.3:41405356-41405375 | None:intergenic | 35.0% | |
| CCTACATGCAATCAAAAAGA+AGG | + | chr4.3:41404999-41405018 | None:intergenic | 35.0% | |
| TATTGAAAATCAGGCTTCTC+TGG | + | chr4.3:41406071-41406090 | None:intergenic | 35.0% | |
| TCATCATGAAAAACTGCACA+AGG | + | chr4.3:41405357-41405376 | None:intergenic | 35.0% | |
| TGAAAGAAATCCTCCAACAA+AGG | + | chr4.3:41405958-41405977 | None:intergenic | 35.0% | |
| TGCTACTCAGAATTCAATCA+GGG | - | chr4.3:41404513-41404532 | MS.gene65275:CDS | 35.0% | |
| TGGAGGATTTCTTTCACAAT+TGG | - | chr4.3:41405962-41405981 | MS.gene65275:intron | 35.0% | |
| TTATTTGAATTTGACGGCGA+AGG | + | chr4.3:41405446-41405465 | None:intergenic | 35.0% | |
| TTCCCCTTCAAAAAGCAATA+GGG | + | chr4.3:41405867-41405886 | None:intergenic | 35.0% | |
| TTGGATTGAGGGTTTATGAA+GGG | + | chr4.3:41404062-41404081 | None:intergenic | 35.0% | |
| TTTGGATTGAGGGTTTATGA+AGG | + | chr4.3:41404063-41404082 | None:intergenic | 35.0% | |
| ! | AAAGAAGGTTTCAAAGCACT+GGG | + | chr4.3:41404984-41405003 | None:intergenic | 35.0% |
| ! | AACTAATTGAATGGATTCGG+GGG | + | chr4.3:41405240-41405259 | None:intergenic | 35.0% |
| ! | CAACTAATTGAATGGATTCG+GGG | + | chr4.3:41405241-41405260 | None:intergenic | 35.0% |
| ! | GCAACTAATTGAATGGATTC+GGG | + | chr4.3:41405242-41405261 | None:intergenic | 35.0% |
| ! | TAAGGGTTTGTTTGGATTGA+GGG | + | chr4.3:41404073-41404092 | None:intergenic | 35.0% |
| ! | TATTTAGGGTGTGTTTGGAT+GGG | - | chr4.3:41403864-41403883 | MS.gene65275:intron | 35.0% |
| !! | AAAAAAAATATCGGTGTCGG+AGG | + | chr4.3:41404153-41404172 | None:intergenic | 35.0% |
| !! | AAAAAAATATCGGTGTCGGA+GGG | + | chr4.3:41404152-41404171 | None:intergenic | 35.0% |
| !! | CCTTCTTTTTGATTGCATGT+AGG | - | chr4.3:41404996-41405015 | MS.gene65275:intron | 35.0% |
| !! | TTGAGTCTTGTTTGCTATCA+AGG | - | chr4.3:41403804-41403823 | MS.gene65275:CDS | 35.0% |
| !!! | AATGCCCTATTGCTTTTTGA+AGG | - | chr4.3:41405860-41405879 | MS.gene65275:intron | 35.0% |
| !!! | ATGCCCTATTGCTTTTTGAA+GGG | - | chr4.3:41405861-41405880 | MS.gene65275:intron | 35.0% |
| !!! | CGAGCTTAGCTTATTGATTT+TGG | - | chr4.3:41403694-41403713 | MS.gene65275:intron | 35.0% |
| !!! | TGCTTGTTTTGGTTGTTTAC+AGG | - | chr4.3:41403490-41403509 | MS.gene65275:intron | 35.0% |
| !!! | TTGCTTTTTGAAGGGGAATA+TGG | - | chr4.3:41405869-41405888 | MS.gene65275:intron | 35.0% |
| AAACCCGAAAATTGGGCATT+AGG | - | chr4.3:41405073-41405092 | MS.gene65275:intron | 40.0% | |
| AAGGATTACCGTTATCACAC+AGG | - | chr4.3:41405739-41405758 | MS.gene65275:intron | 40.0% | |
| AATGCAACCGATGTAACTAG+TGG | + | chr4.3:41404668-41404687 | None:intergenic | 40.0% | |
| ACATGCAGCTGCAAATAACA+AGG | - | chr4.3:41405265-41405284 | MS.gene65275:intron | 40.0% | |
| ACATTATCGGTCTGGTCAAT+AGG | + | chr4.3:41405665-41405684 | None:intergenic | 40.0% | |
| ACCAAGAACTCTAAACAAGC+TGG | - | chr4.3:41404715-41404734 | MS.gene65275:intron | 40.0% | |
| AGCTATCTCCTCGACATTAT+CGG | + | chr4.3:41405678-41405697 | None:intergenic | 40.0% | |
| AGCTGAATCTTGAGTACTTG+TGG | - | chr4.3:41404582-41404601 | MS.gene65275:intron | 40.0% | |
| AGGATTACCGTTATCACACA+GGG | - | chr4.3:41405740-41405759 | MS.gene65275:intron | 40.0% | |
| ATTGAAGAATGTGTGAGAGC+TGG | - | chr4.3:41405999-41406018 | MS.gene65275:intron | 40.0% | |
| ATTGAGGGTTTATGAAGGGA+AGG | + | chr4.3:41404058-41404077 | None:intergenic | 40.0% | |
| CGAGAATAGCATTGTTCAAC+TGG | + | chr4.3:41403524-41403543 | None:intergenic | 40.0% | |
| GCAATTTGCAGCTGATAAGT+TGG | + | chr4.3:41405032-41405051 | None:intergenic | 40.0% | |
| GCTCTCACACATTCTTCAAT+AGG | + | chr4.3:41405999-41406018 | None:intergenic | 40.0% | |
| TATAACGTGGAGTACATTGC+TGG | - | chr4.3:41404393-41404412 | MS.gene65275:intron | 40.0% | |
| TGAAGCACAAACATAGACAC+CGG | - | chr4.3:41404108-41404127 | MS.gene65275:CDS | 40.0% | |
| TTGAAGAATGTGTGAGAGCT+GGG | - | chr4.3:41406000-41406019 | MS.gene65275:intron | 40.0% | |
| TTGAGGGTTTATGAAGGGAA+GGG | + | chr4.3:41404057-41404076 | None:intergenic | 40.0% | |
| TTTGTAGGAGATGCCTTTGT+TGG | - | chr4.3:41405942-41405961 | MS.gene65275:intron | 40.0% | |
| ! | ACCAGCTTGTTTAGAGTTCT+TGG | + | chr4.3:41404719-41404738 | None:intergenic | 40.0% |
| ! | ACTAGTTACATCGGTTGCAT+TGG | - | chr4.3:41404667-41404686 | MS.gene65275:CDS | 40.0% |
| ! | AGATTATTGCGTTTCTGGGA+AGG | - | chr4.3:41404441-41404460 | MS.gene65275:intron | 40.0% |
| ! | ATTTAGGGTGTGTTTGGATG+GGG | - | chr4.3:41403865-41403884 | MS.gene65275:intron | 40.0% |
| ! | ATTTTCGAAAGTTCGTGGCT+GGG | - | chr4.3:41405559-41405578 | MS.gene65275:intron | 40.0% |
| ! | CACATATAAAGGGTGCAGAA+AGG | + | chr4.3:41405381-41405400 | None:intergenic | 40.0% |
| ! | CGTACATTTTCGAAAGTTCG+TGG | - | chr4.3:41405554-41405573 | MS.gene65275:intron | 40.0% |
| ! | CTAAGGGTTTGTTTGGATTG+AGG | + | chr4.3:41404074-41404093 | None:intergenic | 40.0% |
| ! | CTAGTTACATCGGTTGCATT+GGG | - | chr4.3:41404668-41404687 | MS.gene65275:CDS | 40.0% |
| ! | CTATTTAGGGTGTGTTTGGA+TGG | - | chr4.3:41403863-41403882 | MS.gene65275:intron | 40.0% |
| ! | GGTACCTAATGCCCAATTTT+CGG | + | chr4.3:41405080-41405099 | None:intergenic | 40.0% |
| ! | GTACCTAATGCCCAATTTTC+GGG | + | chr4.3:41405079-41405098 | None:intergenic | 40.0% |
| ! | GTGCTACTCAGAATTCAATC+AGG | - | chr4.3:41404512-41404531 | MS.gene65275:CDS | 40.0% |
| ! | TCTCATGCTTCTGCTTGTTT+TGG | - | chr4.3:41403479-41403498 | MS.gene65275:intron | 40.0% |
| ! | TTAGTTGATACCAATGGAGC+AGG | - | chr4.3:41405836-41405855 | MS.gene65275:CDS | 40.0% |
| !! | CATTCTGGGATTCAGGTATA+TGG | - | chr4.3:41405502-41405521 | MS.gene65275:intron | 40.0% |
| !! | GAAGGTGTTCTTCTTGGTAT+GGG | - | chr4.3:41403285-41403304 | MS.gene65275:CDS | 40.0% |
| !!! | TGCCCTATTGCTTTTTGAAG+GGG | - | chr4.3:41405862-41405881 | MS.gene65275:intron | 40.0% |
| ACAGCAGAAATGTCGAGAAG+GGG | + | chr4.3:41403315-41403334 | None:intergenic | 45.0% | |
| AGGCATCAGGAACACACAAA+AGG | - | chr4.3:41405720-41405739 | MS.gene65275:intron | 45.0% | |
| ATCAGCACCCTGTGTGATAA+CGG | + | chr4.3:41405750-41405769 | None:intergenic | 45.0% | |
| CAAACAGCACAAGTTCCTGT+AGG | + | chr4.3:41404862-41404881 | None:intergenic | 45.0% | |
| CAAGATATCCCAGTTGCCAA+AGG | - | chr4.3:41405700-41405719 | MS.gene65275:intron | 45.0% | |
| GAAGACGAGAATACACCTAC+AGG | - | chr4.3:41404844-41404863 | MS.gene65275:intron | 45.0% | |
| GAATTCAATCAGGGTTGCTC+AGG | - | chr4.3:41404522-41404541 | MS.gene65275:intron | 45.0% | |
| GACAGCAGAAATGTCGAGAA+GGG | + | chr4.3:41403316-41403335 | None:intergenic | 45.0% | |
| TGAGTTCTTCAAGGATCCAC+AGG | - | chr4.3:41405399-41405418 | MS.gene65275:intron | 45.0% | |
| TGCATTGGGAAGGACAAGTT+TGG | - | chr4.3:41404682-41404701 | MS.gene65275:CDS | 45.0% | |
| TTACAAGTGTCAGTCGGTGT+CGG | - | chr4.3:41404197-41404216 | MS.gene65275:intron | 45.0% | |
| TTGACGGCGAAGGATTCTTA+CGG | + | chr4.3:41405436-41405455 | None:intergenic | 45.0% | |
| TTGTGTGTTCCTGATGCCTT+TGG | + | chr4.3:41405719-41405738 | None:intergenic | 45.0% | |
| ! | CATTTTCGAAAGTTCGTGGC+TGG | - | chr4.3:41405558-41405577 | MS.gene65275:intron | 45.0% |
| ! | GCACTGACACTTCTGATTGA+AGG | + | chr4.3:41404252-41404271 | None:intergenic | 45.0% |
| ! | TAGTGGTTGCTTCAAGTTCC+CGG | - | chr4.3:41404640-41404659 | MS.gene65275:CDS | 45.0% |
| ! | TTACATCGGTTGCATTGGGA+AGG | - | chr4.3:41404672-41404691 | MS.gene65275:CDS | 45.0% |
| !! | ACTTGTGCTGTTTGTGTCGT+TGG | - | chr4.3:41404868-41404887 | MS.gene65275:intron | 45.0% |
| !! | GCTTTGGAAGGTGTTCTTCT+TGG | - | chr4.3:41403279-41403298 | MS.gene65275:CDS | 45.0% |
| !! | GGAAGGTGTTCTTCTTGGTA+TGG | - | chr4.3:41403284-41403303 | MS.gene65275:CDS | 45.0% |
| !! | GGATTTGCATTCTGGGATTC+AGG | - | chr4.3:41405495-41405514 | MS.gene65275:intron | 45.0% |
| !! | TTTGTGTCGTTGGTGGTGAA+AGG | - | chr4.3:41404878-41404897 | MS.gene65275:intron | 45.0% |
| !!! | AAAAAAAATGAATTATTTTT+GGG | + | chr4.3:41404937-41404956 | None:intergenic | 5.0% |
| !!! | TAAAAAAAATGAATTATTTT+TGG | + | chr4.3:41404938-41404957 | None:intergenic | 5.0% |
| AACGTGGAGTACATTGCTGG+AGG | - | chr4.3:41404396-41404415 | MS.gene65275:intron | 50.0% | |
| ACCGATGTAACTAGTGGCTC+CGG | + | chr4.3:41404662-41404681 | None:intergenic | 50.0% | |
| AGGGTTTATGAAGGGAAGGG+AGG | + | chr4.3:41404054-41404073 | None:intergenic | 50.0% | |
| CATGACACGTGTCAGACACT+TGG | - | chr4.3:41404221-41404240 | MS.gene65275:intron | 50.0% | |
| CCATCTTGAGCAACACACAC+GGG | + | chr4.3:41405773-41405792 | None:intergenic | 50.0% | |
| CCCATCTTGAGCAACACACA+CGG | + | chr4.3:41405774-41405793 | None:intergenic | 50.0% | |
| CGACAGCAGAAATGTCGAGA+AGG | + | chr4.3:41403317-41403336 | None:intergenic | 50.0% | |
| GGGTTTATGAAGGGAAGGGA+GGG | + | chr4.3:41404053-41404072 | None:intergenic | 50.0% | |
| GGTTTATGAAGGGAAGGGAG+GGG | + | chr4.3:41404052-41404071 | None:intergenic | 50.0% | |
| GTAGGAGATGCCTTTGTTGG+AGG | - | chr4.3:41405945-41405964 | MS.gene65275:intron | 50.0% | |
| TACGGAAGAGCTTTCTCCTG+TGG | + | chr4.3:41405418-41405437 | None:intergenic | 50.0% | |
| TCCTGATGCCTTTGGCAACT+GGG | + | chr4.3:41405711-41405730 | None:intergenic | 50.0% | |
| TCTCCTCGACATTATCGGTC+TGG | + | chr4.3:41405673-41405692 | None:intergenic | 50.0% | |
| TGACCAGACCGATAATGTCG+AGG | - | chr4.3:41405667-41405686 | MS.gene65275:intron | 50.0% | |
| TTCCTGATGCCTTTGGCAAC+TGG | + | chr4.3:41405712-41405731 | None:intergenic | 50.0% | |
| ! | CAGAAGTGGATTCTACGGTC+TGG | + | chr4.3:41404789-41404808 | None:intergenic | 50.0% |
| ! | CCGTGTGTGTTGCTCAAGAT+GGG | - | chr4.3:41405771-41405790 | MS.gene65275:intron | 50.0% |
| ! | TAGGGCATTACCTGCTCCAT+TGG | + | chr4.3:41405849-41405868 | None:intergenic | 50.0% |
| !! | TGTGCTGTTTGTGTCGTTGG+TGG | - | chr4.3:41404871-41404890 | MS.gene65275:intron | 50.0% |
| CCCGGAGCCACTAGTTACAT+CGG | - | chr4.3:41404658-41404677 | MS.gene65275:CDS | 55.0% | |
| CCGATGTAACTAGTGGCTCC+GGG | + | chr4.3:41404661-41404680 | None:intergenic | 55.0% | |
| CTTCTCTGGGTAAGTGCAGC+CGG | + | chr4.3:41406057-41406076 | None:intergenic | 55.0% | |
| GAGGGTCAGTGTTAGTGTCG+TGG | + | chr4.3:41404134-41404153 | None:intergenic | 55.0% | |
| GTCAGTGTTAGTGTCGTGGC+CGG | + | chr4.3:41404130-41404149 | None:intergenic | 55.0% | |
| TGGATTCGGGGGATACAGTG+AGG | + | chr4.3:41405229-41405248 | None:intergenic | 55.0% | |
| TGGGAAGGACAAGTTTGGCG+AGG | - | chr4.3:41404687-41404706 | MS.gene65275:CDS | 55.0% | |
| TTCGAAAGTTCGTGGCTGGG+AGG | - | chr4.3:41405562-41405581 | MS.gene65275:intron | 55.0% | |
| ! | CCCGTGTGTGTTGCTCAAGA+TGG | - | chr4.3:41405770-41405789 | MS.gene65275:intron | 55.0% |
| !! | CGTTGGTGGTGAAAGGTGAG+AGG | - | chr4.3:41404885-41404904 | MS.gene65275:intron | 55.0% |
| !! | TCCCAGTTGCCAAAGGCATC+AGG | - | chr4.3:41405707-41405726 | MS.gene65275:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 41403276 | 41406091 | 41403276 | ID=MS.gene65275 |
| chr4.3 | mRNA | 41403276 | 41406091 | 41403276 | ID=MS.gene65275.t1;Parent=MS.gene65275 |
| chr4.3 | exon | 41406009 | 41406091 | 41406009 | ID=MS.gene65275.t1.exon1;Parent=MS.gene65275.t1 |
| chr4.3 | CDS | 41406009 | 41406091 | 41406009 | ID=cds.MS.gene65275.t1;Parent=MS.gene65275.t1 |
| chr4.3 | exon | 41405802 | 41405855 | 41405802 | ID=MS.gene65275.t1.exon2;Parent=MS.gene65275.t1 |
| chr4.3 | CDS | 41405802 | 41405855 | 41405802 | ID=cds.MS.gene65275.t1;Parent=MS.gene65275.t1 |
| chr4.3 | exon | 41404950 | 41404996 | 41404950 | ID=MS.gene65275.t1.exon3;Parent=MS.gene65275.t1 |
| chr4.3 | CDS | 41404950 | 41404996 | 41404950 | ID=cds.MS.gene65275.t1;Parent=MS.gene65275.t1 |
| chr4.3 | exon | 41404824 | 41404855 | 41404824 | ID=MS.gene65275.t1.exon4;Parent=MS.gene65275.t1 |
| chr4.3 | CDS | 41404824 | 41404855 | 41404824 | ID=cds.MS.gene65275.t1;Parent=MS.gene65275.t1 |
| chr4.3 | exon | 41404623 | 41404724 | 41404623 | ID=MS.gene65275.t1.exon5;Parent=MS.gene65275.t1 |
| chr4.3 | CDS | 41404623 | 41404724 | 41404623 | ID=cds.MS.gene65275.t1;Parent=MS.gene65275.t1 |
| chr4.3 | exon | 41404468 | 41404535 | 41404468 | ID=MS.gene65275.t1.exon6;Parent=MS.gene65275.t1 |
| chr4.3 | CDS | 41404468 | 41404535 | 41404468 | ID=cds.MS.gene65275.t1;Parent=MS.gene65275.t1 |
| chr4.3 | exon | 41404273 | 41404349 | 41404273 | ID=MS.gene65275.t1.exon7;Parent=MS.gene65275.t1 |
| chr4.3 | CDS | 41404273 | 41404349 | 41404273 | ID=cds.MS.gene65275.t1;Parent=MS.gene65275.t1 |
| chr4.3 | exon | 41404081 | 41404178 | 41404081 | ID=MS.gene65275.t1.exon8;Parent=MS.gene65275.t1 |
| chr4.3 | CDS | 41404081 | 41404178 | 41404081 | ID=cds.MS.gene65275.t1;Parent=MS.gene65275.t1 |
| chr4.3 | exon | 41403933 | 41404003 | 41403933 | ID=MS.gene65275.t1.exon9;Parent=MS.gene65275.t1 |
| chr4.3 | CDS | 41403933 | 41404003 | 41403933 | ID=cds.MS.gene65275.t1;Parent=MS.gene65275.t1 |
| chr4.3 | exon | 41403784 | 41403850 | 41403784 | ID=MS.gene65275.t1.exon10;Parent=MS.gene65275.t1 |
| chr4.3 | CDS | 41403784 | 41403850 | 41403784 | ID=cds.MS.gene65275.t1;Parent=MS.gene65275.t1 |
| chr4.3 | exon | 41403510 | 41403693 | 41403510 | ID=MS.gene65275.t1.exon11;Parent=MS.gene65275.t1 |
| chr4.3 | CDS | 41403510 | 41403693 | 41403510 | ID=cds.MS.gene65275.t1;Parent=MS.gene65275.t1 |
| chr4.3 | exon | 41403276 | 41403418 | 41403276 | ID=MS.gene65275.t1.exon12;Parent=MS.gene65275.t1 |
| chr4.3 | CDS | 41403276 | 41403418 | 41403276 | ID=cds.MS.gene65275.t1;Parent=MS.gene65275.t1 |
| Gene Sequence |
| Protein sequence |
