AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65645


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65645.t1 MTR_5g055480 97.442 391 9 1 1 391 1 390 0.0 789
MS.gene65645.t1 MTR_1g110290 68.367 392 120 3 1 391 5 393 0.0 558
MS.gene65645.t1 MTR_6g083830 54.436 417 164 5 1 391 3 419 6.92e-162 461
MS.gene65645.t1 MTR_5g006920 50.355 423 176 4 1 391 1 421 8.86e-151 433
MS.gene65645.t1 MTR_5g006930 53.046 394 174 4 1 391 1 386 1.50e-146 421
MS.gene65645.t1 MTR_3g104840 48.780 410 172 8 1 391 3 393 2.71e-134 390
MS.gene65645.t1 MTR_1g016880 50.145 345 164 3 40 382 28 366 5.44e-127 370
MS.gene65645.t1 MTR_2g005350 53.595 306 140 1 86 389 131 436 7.09e-124 365
MS.gene65645.t1 MTR_8g015500 52.787 305 142 2 89 391 109 413 1.33e-117 348
MS.gene65645.t1 MTR_3g108740 41.875 320 149 7 92 382 60 371 2.79e-73 233
MS.gene65645.t1 MTR_1g009960 39.938 323 166 6 87 384 73 392 1.70e-70 227
MS.gene65645.t1 MTR_4g127550 39.339 333 164 7 82 384 63 387 1.71e-69 224
MS.gene65645.t1 MTR_2g037620 39.446 289 140 5 123 384 97 377 4.72e-65 212
MS.gene65645.t1 MTR_2g037600 42.105 285 139 5 123 384 105 386 5.16e-65 212
MS.gene65645.t1 MTR_1g009960 41.392 273 150 4 87 351 73 343 8.46e-64 209
MS.gene65645.t1 MTR_2g024120 36.909 317 155 9 108 382 46 359 2.99e-53 181
MS.gene65645.t1 MTR_8g094180 36.246 309 144 9 123 382 55 359 3.05e-53 181
MS.gene65645.t1 MTR_8g094180 37.218 266 132 6 123 356 55 317 5.66e-50 171
MS.gene65645.t1 MTR_3g106930 35.276 326 191 9 78 389 55 374 5.12e-45 159
MS.gene65645.t1 MTR_1g048320 38.889 288 145 10 123 389 64 341 1.98e-38 141
MS.gene65645.t1 MTR_2g087610 34.783 299 151 11 124 389 78 365 2.06e-37 139
MS.gene65645.t1 MTR_1g031060 37.931 290 147 9 123 389 80 359 2.78e-37 138
MS.gene65645.t1 MTR_1g031080 35.484 248 130 8 165 389 49 289 3.91e-30 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65645.t1 AT1G68390 64.309 311 107 3 85 391 98 408 4.19e-154 441
MS.gene65645.t1 AT1G10280 46.970 396 181 6 22 389 16 410 3.11e-128 375
MS.gene65645.t1 AT5G11730 53.846 312 142 2 80 389 73 384 2.01e-126 370
MS.gene65645.t1 AT1G73810 49.268 410 182 8 1 389 12 416 5.24e-126 370
MS.gene65645.t1 AT1G51770 52.353 340 159 3 54 391 54 392 8.35e-126 369
MS.gene65645.t1 AT1G68380 50.815 368 167 7 30 390 31 391 4.41e-124 364
MS.gene65645.t1 AT5G25970 51.258 318 150 3 77 389 68 385 1.86e-119 352
MS.gene65645.t1 AT5G25970 51.258 318 150 3 77 389 68 385 1.86e-119 352
MS.gene65645.t1 AT5G25970 51.258 318 150 3 77 389 68 385 1.86e-119 352
MS.gene65645.t1 AT3G21310 48.225 338 168 3 54 389 49 381 3.96e-118 348
MS.gene65645.t1 AT3G21310 48.225 338 168 3 54 389 49 381 3.96e-118 348
MS.gene65645.t1 AT1G10880 52.759 290 135 2 98 386 93 381 1.79e-114 339
MS.gene65645.t1 AT1G51770 47.647 340 148 4 54 391 54 365 1.26e-108 324
MS.gene65645.t1 AT5G16170 42.971 377 190 4 32 389 37 407 3.20e-108 324
MS.gene65645.t1 AT4G30060 39.329 328 160 7 84 382 70 387 1.26e-68 222
MS.gene65645.t1 AT4G30060 39.329 328 160 7 84 382 70 387 1.26e-68 222
MS.gene65645.t1 AT2G19160 38.066 331 168 7 84 386 67 388 3.94e-68 221
MS.gene65645.t1 AT2G19160 38.066 331 168 7 84 386 67 388 3.94e-68 221
MS.gene65645.t1 AT4G31350 41.034 290 148 4 123 391 88 375 1.39e-67 218
MS.gene65645.t1 AT4G31350 41.034 290 148 4 123 391 88 375 1.39e-67 218
MS.gene65645.t1 AT4G31350 41.034 290 148 4 123 391 88 375 1.39e-67 218
MS.gene65645.t1 AT4G25870 40.190 316 161 5 96 386 70 382 3.28e-67 218
MS.gene65645.t1 AT5G57270 39.241 316 164 5 96 386 69 381 7.04e-64 209
MS.gene65645.t1 AT5G57270 39.241 316 164 5 96 386 69 381 7.04e-64 209
MS.gene65645.t1 AT5G57270 39.241 316 164 5 96 386 69 381 7.04e-64 209
MS.gene65645.t1 AT5G57270 39.241 316 164 5 96 386 69 381 7.04e-64 209
MS.gene65645.t1 AT5G57270 39.241 316 164 5 96 386 69 381 7.04e-64 209
MS.gene65645.t1 AT3G21310 48.558 208 101 2 53 259 48 250 3.10e-63 204
MS.gene65645.t1 AT4G31350 40.351 285 142 5 123 386 88 365 1.76e-62 205
MS.gene65645.t1 AT5G14550 36.246 309 149 8 119 383 60 364 2.93e-54 184
MS.gene65645.t1 AT5G14550 36.364 308 148 8 120 383 61 364 3.39e-54 184
MS.gene65645.t1 AT5G14550 37.884 293 142 9 120 381 61 344 1.22e-53 181
MS.gene65645.t1 AT1G11940 36.076 316 154 11 109 382 61 370 1.60e-51 177
MS.gene65645.t1 AT1G62305 36.246 309 149 10 116 382 62 364 1.75e-51 177
MS.gene65645.t1 AT5G25330 34.392 378 207 15 30 389 5 359 2.98e-49 171
MS.gene65645.t1 AT3G52060 35.740 277 161 8 123 389 74 343 7.57e-48 166
MS.gene65645.t1 AT5G14550 38.062 289 142 10 120 383 61 337 8.18e-48 166
MS.gene65645.t1 AT1G62305 42.466 219 99 6 116 312 62 275 1.29e-46 162
MS.gene65645.t1 AT1G11940 45.833 192 95 6 109 296 61 247 2.27e-45 157
MS.gene65645.t1 AT1G62305 33.010 309 135 10 116 382 62 340 3.05e-38 141
MS.gene65645.t1 AT5G22070 34.667 300 151 12 124 389 71 359 3.62e-37 138
MS.gene65645.t1 AT4G32290 35.417 288 160 7 124 389 93 376 1.58e-34 132

Find 74 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGCCTTTAGCTCCTCTA+TGG 0.278504 5.2:-47438581 MS.gene65645:CDS
TCTGGTCTCACATATTTAAC+TGG 0.301424 5.2:+47436507 None:intergenic
AAAGGATATTCATCTATCTT+AGG 0.344852 5.2:+47438648 None:intergenic
AATCAAACATGTAAGTATAA+TGG 0.347050 5.2:-47436453 MS.gene65645:CDS
AAATTCTTCAAAGGGCATAA+AGG 0.387212 5.2:-47438555 MS.gene65645:CDS
AGGCTGGAATCGAATACTAT+TGG 0.391723 5.2:+47438768 None:intergenic
GTTTATAAGTGCATGACCTT+TGG 0.392410 5.2:+47436354 None:intergenic
ATGTTTGTTATTTGTTTGCT+AGG 0.408942 5.2:-47436419 MS.gene65645:CDS
AAACTCAGACAATGGAGAAA+AGG 0.424464 5.2:-47436732 MS.gene65645:CDS
AGGGTCACAATGGTTTGAAA+TGG 0.427955 5.2:-47436712 MS.gene65645:CDS
CAAGAAGCGCGTTTGCTAGC+AGG 0.432228 5.2:+47436925 None:intergenic
AATTCTTCAAAGGGCATAAA+GGG 0.434327 5.2:-47438554 MS.gene65645:CDS
GAAGTTTGACTTGGGTTGAC+TGG 0.435516 5.2:-47436548 MS.gene65645:CDS
TATAATGCAGAAAGTAGAAT+GGG 0.436466 5.2:-47436979 MS.gene65645:intron
GTTTGCTAGCAGGCGACGCT+CGG 0.437681 5.2:+47436935 None:intergenic
AACTTAATGCTAACAAAAGT+TGG 0.443687 5.2:+47436591 None:intergenic
TGAAAACCGGGTAATATGTT+CGG 0.445181 5.2:+47436658 None:intergenic
AACTCAGACAATGGAGAAAA+GGG 0.454574 5.2:-47436731 MS.gene65645:CDS
CGCGTCCAACTGAACTTGCC+TGG 0.457072 5.2:+47436787 None:intergenic
GTGTGATACCACATGCTAGA+AGG 0.467681 5.2:+47438886 None:intergenic
GCTCATGAGGTTTGCTCCAA+AGG 0.468695 5.2:-47436370 MS.gene65645:CDS
ACTTGGGTTGACTGGTCAAA+GGG 0.471540 5.2:-47436540 MS.gene65645:CDS
TGAGTGATGAAGAATTGTTA+TGG 0.473976 5.2:-47438686 MS.gene65645:CDS
ATTGTCTGAGTTTGATCGTA+GGG 0.474052 5.2:+47436742 None:intergenic
CTGATATGAGAACAAATCGT+TGG 0.474721 5.2:+47436892 None:intergenic
GTGGAGAGTCCTGTGTTTCA+TGG 0.483852 5.2:-47438483 MS.gene65645:CDS
TTGAAGAATTTCTCCCATAG+AGG 0.489698 5.2:+47438567 None:intergenic
AATACTATTGGTTGGCGTAA+CGG 0.490927 5.2:+47438780 None:intergenic
TTCTCCCATAGAGGAGCTAA+AGG 0.493380 5.2:+47438576 None:intergenic
GACTTGGGTTGACTGGTCAA+AGG 0.498955 5.2:-47436541 MS.gene65645:CDS
ACTTCAGAACCATTGTAAGA+TGG 0.502479 5.2:+47438504 None:intergenic
CTAGCATGTGGTATCACACT+TGG 0.505414 5.2:-47438882 MS.gene65645:CDS
CTCACATATTTAACTGGGTG+TGG 0.508350 5.2:+47436513 None:intergenic
AGCCTCAATGGTAGTCATGA+AGG 0.515851 5.2:-47438750 MS.gene65645:CDS
TACAAATAGAAGTTTGACTT+GGG 0.522087 5.2:-47436556 MS.gene65645:CDS
ATATAATGCAGAAAGTAGAA+TGG 0.524034 5.2:-47436980 MS.gene65645:intron
TATGGGAGAAATTCTTCAAA+GGG 0.525258 5.2:-47438563 MS.gene65645:CDS
CTACGTCATGGCTTACGACC+AGG 0.528541 5.2:-47436805 MS.gene65645:CDS
TACGACCAGGCAAGTTCAGT+TGG 0.529529 5.2:-47436792 MS.gene65645:CDS
TACCTTCTCCTTCTAGCATG+TGG 0.532227 5.2:-47438894 MS.gene65645:CDS
TTCATGACTACCATTGAGGC+TGG 0.539090 5.2:+47438752 None:intergenic
ATGAGCCTTGACAATGAAGT+AGG 0.542080 5.2:+47436387 None:intergenic
GTATTCGATTCCAGCCTCAA+TGG 0.543962 5.2:-47438762 MS.gene65645:CDS
AGAGTCCTGTGTTTCATGGC+AGG 0.545935 5.2:-47438479 MS.gene65645:CDS
TGGCAGGAGAATTCCCAGTA+AGG 0.548902 5.2:-47438463 MS.gene65645:intron
TCTTGCCTACTTCATTGTCA+AGG 0.554046 5.2:-47436392 MS.gene65645:CDS
ATACAAATAGAAGTTTGACT+TGG 0.556289 5.2:-47436557 MS.gene65645:CDS
CTATGGGAGAAATTCTTCAA+AGG 0.556837 5.2:-47438564 MS.gene65645:CDS
TCCTTTCGATCGAGTTCCGA+AGG 0.557813 5.2:-47438631 MS.gene65645:CDS
ATCCTTCATGACTACCATTG+AGG 0.559449 5.2:+47438748 None:intergenic
ATCTTACAATGGTTCTGAAG+TGG 0.559601 5.2:-47438502 MS.gene65645:CDS
TGTGCCTTTAGCTCCTCTAT+GGG 0.561241 5.2:-47438580 MS.gene65645:CDS
CTACGATCAAACTCAGACAA+TGG 0.571848 5.2:-47436740 MS.gene65645:CDS
CTTCATTGTCAAGGCTCATG+AGG 0.577302 5.2:-47436383 MS.gene65645:CDS
TGGAATCGAATACTATTGGT+TGG 0.581530 5.2:+47438772 None:intergenic
CATAGAGGAGCTAAAGGCAC+AGG 0.582656 5.2:+47438582 None:intergenic
CTGGTCTCACATATTTAACT+GGG 0.587265 5.2:+47436508 None:intergenic
AAATCATGTACAACTTGAGA+TGG 0.588695 5.2:+47438708 None:intergenic
CATTGTCTGAGTTTGATCGT+AGG 0.589831 5.2:+47436741 None:intergenic
ATTCTCCTGCCATGAAACAC+AGG 0.591758 5.2:+47438474 None:intergenic
ACCTTCGGAACTCGATCGAA+AGG 0.595763 5.2:+47438630 None:intergenic
CAAGTTCAGTTGGACGCGGA+CGG 0.618278 5.2:-47436782 MS.gene65645:CDS
CTAGAAGGAGAAGGTAAGTG+AGG 0.623171 5.2:+47438901 None:intergenic
ATCAGACCGAACATATTACC+CGG 0.623786 5.2:-47436664 MS.gene65645:CDS
TTTCGATCGAGTTCCGAAGG+TGG 0.623922 5.2:-47438628 MS.gene65645:CDS
CACTCGAATCCATCTTACAA+TGG 0.632327 5.2:-47438513 MS.gene65645:CDS
ACTGTTGAGAAGTTGAATAG+TGG 0.634685 5.2:+47436858 None:intergenic
CAGGCAAGTTCAGTTGGACG+CGG 0.637111 5.2:-47436786 MS.gene65645:CDS
TGGGTTGACTGGTCAAAGGG+TGG 0.638199 5.2:-47436537 MS.gene65645:CDS
AATGGAGAAAAGGGTCACAA+TGG 0.647572 5.2:-47436722 MS.gene65645:CDS
TACCACATGCTAGAAGGAGA+AGG 0.656558 5.2:+47438892 None:intergenic
ATAATGCAGAAAGTAGAATG+GGG 0.668247 5.2:-47436978 MS.gene65645:intron
TTGTCTGAGTTTGATCGTAG+GGG 0.668407 5.2:+47436743 None:intergenic
AGTTAAATATGTGAGACCAG+AGG 0.732458 5.2:-47436505 MS.gene65645:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATAATTGAAAGAATAA+AGG - chr5.2:47437744-47437763 MS.gene65645:intron 10.0%
!!! AAAGATAAAAAACTTTTTTG+AGG - chr5.2:47437410-47437429 MS.gene65645:intron 15.0%
!!! AAGATAAAAAACTTTTTTGA+GGG - chr5.2:47437411-47437430 MS.gene65645:intron 15.0%
!!! AAGTTTTTTATCTTTTCTTT+TGG + chr5.2:47437405-47437424 None:intergenic 15.0%
!!! GAATTTTTTTTATCTTGATA+TGG - chr5.2:47436902-47436921 MS.gene65645:CDS 15.0%
!!! TGTTTCAAATCTTAATTTTT+AGG - chr5.2:47438266-47438285 MS.gene65645:intron 15.0%
!!! TTTAATTTTTTTACACATTG+TGG + chr5.2:47438098-47438117 None:intergenic 15.0%
!! AAAAAATATTGAATGTAACC+AGG - chr5.2:47437257-47437276 MS.gene65645:intron 20.0%
!! AAATTGAATTAAGAGGAAAA+GGG - chr5.2:47437174-47437193 MS.gene65645:intron 20.0%
!! AACACTAAAGTTTCATTAAA+AGG + chr5.2:47438030-47438049 None:intergenic 20.0%
!! AAGTATACAATAAACCATAA+AGG + chr5.2:47438247-47438266 None:intergenic 20.0%
!! AATCAAACATGTAAGTATAA+TGG - chr5.2:47438884-47438903 MS.gene65645:CDS 20.0%
!! ATCAAAGAACAAATAAAGTA+AGG - chr5.2:47436984-47437003 MS.gene65645:intron 20.0%
!! GAGAAAATTAATTTCCTTTA+TGG - chr5.2:47438230-47438249 MS.gene65645:intron 20.0%
!! TAAATTGAATTAAGAGGAAA+AGG - chr5.2:47437173-47437192 MS.gene65645:intron 20.0%
!! TCAAAGAACAAATAAAGTAA+GGG - chr5.2:47436985-47437004 MS.gene65645:intron 20.0%
!! TTATGAATGAAAATTGTCAT+TGG - chr5.2:47436930-47436949 MS.gene65645:CDS 20.0%
!!! AAACCATGTATAAATCTTTT+AGG + chr5.2:47437794-47437813 None:intergenic 20.0%
!!! AATTGTTTGATTTGAAAACA+TGG + chr5.2:47437045-47437064 None:intergenic 20.0%
!!! AGATAAAAAACTTTTTTGAG+GGG - chr5.2:47437412-47437431 MS.gene65645:intron 20.0%
! AAAAAATTCACTAACCTTAC+TGG + chr5.2:47436891-47436910 None:intergenic 25.0%
! AAAAATTCACTAACCTTACT+GGG + chr5.2:47436890-47436909 None:intergenic 25.0%
! AAAGGATATTCATCTATCTT+AGG + chr5.2:47436692-47436711 None:intergenic 25.0%
! AACTTAATGCTAACAAAAGT+TGG + chr5.2:47438749-47438768 None:intergenic 25.0%
! AATTGAATTAAGAGGAAAAG+GGG - chr5.2:47437175-47437194 MS.gene65645:intron 25.0%
! ACTAAAGTTTCATTAAAAGG+TGG + chr5.2:47438027-47438046 None:intergenic 25.0%
! ATACAAATAGAAGTTTGACT+TGG - chr5.2:47438780-47438799 MS.gene65645:CDS 25.0%
! ATAGATTATAGTCTTCAACT+AGG - chr5.2:47437861-47437880 MS.gene65645:intron 25.0%
! ATATAATGCAGAAAGTAGAA+TGG - chr5.2:47438357-47438376 MS.gene65645:intron 25.0%
! ATTGGAAGCTTAATTCAAAA+TGG + chr5.2:47438145-47438164 None:intergenic 25.0%
! CCTAAGTAAATTGAATTAAG+AGG - chr5.2:47437167-47437186 MS.gene65645:intron 25.0%
! CCTCTTAATTCAATTTACTT+AGG + chr5.2:47437170-47437189 None:intergenic 25.0%
! TATAATGCAGAAAGTAGAAT+GGG - chr5.2:47438358-47438377 MS.gene65645:intron 25.0%
! TCAAATCAAACAATTCTATG+TGG - chr5.2:47437050-47437069 MS.gene65645:intron 25.0%
! TGTTTGTATATAGCATTTCA+TGG - chr5.2:47437588-47437607 MS.gene65645:intron 25.0%
!! ATTTTCTCATGATCACTAAT+TGG + chr5.2:47438218-47438237 None:intergenic 25.0%
!! CATTGCATTGATAACTAATT+AGG + chr5.2:47437987-47438006 None:intergenic 25.0%
!! CTTTTGTTAGCATTAAGTTT+TGG - chr5.2:47438750-47438769 MS.gene65645:CDS 25.0%
!! GTTTTCAGAAAATATTGCAA+TGG - chr5.2:47438695-47438714 MS.gene65645:CDS 25.0%
!! TACAAATAGAAGTTTGACTT+GGG - chr5.2:47438781-47438800 MS.gene65645:CDS 25.0%
!! TTTTATCTTTTCTTTTGGCA+AGG + chr5.2:47437400-47437419 None:intergenic 25.0%
!! TTTTCTCATGATCACTAATT+GGG + chr5.2:47438217-47438236 None:intergenic 25.0%
!!! ATGTTTGTTATTTGTTTGCT+AGG - chr5.2:47438918-47438937 MS.gene65645:CDS 25.0%
!!! GATAAAAAACTTTTTTGAGG+GGG - chr5.2:47437413-47437432 MS.gene65645:intron 25.0%
!!! GTATACACACGTTTTAAATA+TGG - chr5.2:47437097-47437116 MS.gene65645:intron 25.0%
!!! TACATTTTGAAACAAACTGA+TGG + chr5.2:47438319-47438338 None:intergenic 25.0%
!!! TGCTAATAGTATTTTGACTA+TGG + chr5.2:47437679-47437698 None:intergenic 25.0%
!!! TTGCAATATTTTCTGAAAAC+CGG + chr5.2:47438695-47438714 None:intergenic 25.0%
AAATCATGTACAACTTGAGA+TGG + chr5.2:47436632-47436651 None:intergenic 30.0%
AAGTTTCATTAAAAGGTGGT+AGG + chr5.2:47438023-47438042 None:intergenic 30.0%
ACACTTTCAATATGAAGTGT+CGG - chr5.2:47437296-47437315 MS.gene65645:intron 30.0%
ACTCTTTAGACTCTACATAT+TGG + chr5.2:47438066-47438085 None:intergenic 30.0%
ATAATGCAGAAAGTAGAATG+GGG - chr5.2:47438359-47438378 MS.gene65645:intron 30.0%
ATGAAACTTTAGTGTTGTGT+AGG - chr5.2:47438034-47438053 MS.gene65645:intron 30.0%
ATTATAGTCTTCAACTAGGT+AGG - chr5.2:47437865-47437884 MS.gene65645:intron 30.0%
ATTGAATTAAGAGGAAAAGG+GGG - chr5.2:47437176-47437195 MS.gene65645:intron 30.0%
GTGCCTAAAAGATTTATACA+TGG - chr5.2:47437788-47437807 MS.gene65645:intron 30.0%
GTTGAAGACTATAATCTATG+AGG + chr5.2:47437860-47437879 None:intergenic 30.0%
TATGGGAGAAATTCTTCAAA+GGG - chr5.2:47436774-47436793 MS.gene65645:CDS 30.0%
TCTGCATTATATCAGATGAA+GGG + chr5.2:47438349-47438368 None:intergenic 30.0%
TGAAACTTTAGTGTTGTGTA+GGG - chr5.2:47438035-47438054 MS.gene65645:intron 30.0%
TGAGTGATGAAGAATTGTTA+TGG - chr5.2:47436651-47436670 MS.gene65645:CDS 30.0%
TTAATACTGTGCCTTAACTT+TGG + chr5.2:47437900-47437919 None:intergenic 30.0%
TTCTGCATTATATCAGATGA+AGG + chr5.2:47438350-47438369 None:intergenic 30.0%
! AAATTCTTCAAAGGGCATAA+AGG - chr5.2:47436782-47436801 MS.gene65645:CDS 30.0%
! AATTCTTCAAAGGGCATAAA+GGG - chr5.2:47436783-47436802 MS.gene65645:CDS 30.0%
!! CTTCATATTGAAAGTGTTTC+CGG + chr5.2:47437293-47437312 None:intergenic 30.0%
!! TGCAATATTTTCTGAAAACC+GGG + chr5.2:47438694-47438713 None:intergenic 30.0%
!!! GTATTTTGACTATGGAATAC+TGG + chr5.2:47437671-47437690 None:intergenic 30.0%
AAAAACTCACAAGTAACCTC+TGG + chr5.2:47438851-47438870 None:intergenic 35.0%
AAACTCAGACAATGGAGAAA+AGG - chr5.2:47438605-47438624 MS.gene65645:CDS 35.0%
AAAGGTGGTAGGAATTTAGA+TGG + chr5.2:47438012-47438031 None:intergenic 35.0%
AACTATCCTCTTCCATACTA+CGG + chr5.2:47437535-47437554 None:intergenic 35.0%
AACTCAGACAATGGAGAAAA+GGG - chr5.2:47438606-47438625 MS.gene65645:CDS 35.0%
AATTAAATGAAGCAGAGCAG+AGG - chr5.2:47437201-47437220 MS.gene65645:intron 35.0%
ACTGTTGAGAAGTTGAATAG+TGG + chr5.2:47438482-47438501 None:intergenic 35.0%
ACTTCAGAACCATTGTAAGA+TGG + chr5.2:47436836-47436855 None:intergenic 35.0%
AGTTAAATATGTGAGACCAG+AGG - chr5.2:47438832-47438851 MS.gene65645:CDS 35.0%
ATAATCTATGAGGTGGCAAA+TGG + chr5.2:47437850-47437869 None:intergenic 35.0%
ATATGTAGCTGTTGGAAGTT+TGG - chr5.2:47437926-47437945 MS.gene65645:intron 35.0%
ATTAAATGAAGCAGAGCAGA+GGG - chr5.2:47437202-47437221 MS.gene65645:intron 35.0%
ATTGTCTGAGTTTGATCGTA+GGG + chr5.2:47438598-47438617 None:intergenic 35.0%
CTATGGGAGAAATTCTTCAA+AGG - chr5.2:47436773-47436792 MS.gene65645:CDS 35.0%
CTGATATGAGAACAAATCGT+TGG + chr5.2:47438448-47438467 None:intergenic 35.0%
CTGGTCTCACATATTTAACT+GGG + chr5.2:47438832-47438851 None:intergenic 35.0%
GAAGACTATAATCTATGAGG+TGG + chr5.2:47437857-47437876 None:intergenic 35.0%
GGCAAGGATTAAAAAAACCT+TGG + chr5.2:47437384-47437403 None:intergenic 35.0%
TAAGGTAGTTATGGTCTCAA+TGG + chr5.2:47437353-47437372 None:intergenic 35.0%
TCGCTCATGTGTTATAGTAT+TGG - chr5.2:47437476-47437495 MS.gene65645:intron 35.0%
TCTGGTCTCACATATTTAAC+TGG + chr5.2:47438833-47438852 None:intergenic 35.0%
TGAAAACCGGGTAATATGTT+CGG + chr5.2:47438682-47438701 None:intergenic 35.0%
TGGAATCGAATACTATTGGT+TGG + chr5.2:47436568-47436587 None:intergenic 35.0%
TGGCAAATGGCAATTTATCT+GGG + chr5.2:47437837-47437856 None:intergenic 35.0%
TTAAGGCACAGTATTAACTG+AGG - chr5.2:47437903-47437922 MS.gene65645:intron 35.0%
TTGAAGAATTTCTCCCATAG+AGG + chr5.2:47436773-47436792 None:intergenic 35.0%
! AATACTATTGGTTGGCGTAA+CGG + chr5.2:47436560-47436579 None:intergenic 35.0%
! ACTAACATGTGTCCTCTTTT+TGG + chr5.2:47437619-47437638 None:intergenic 35.0%
! AGAGGTTACTTGTGAGTTTT+TGG - chr5.2:47438850-47438869 MS.gene65645:CDS 35.0%
!! ATCTTACAATGGTTCTGAAG+TGG - chr5.2:47436835-47436854 MS.gene65645:CDS 35.0%
!! GTGACATGTACGTTTTAAGT+TGG - chr5.2:47437320-47437339 MS.gene65645:intron 35.0%
!! GTGAGTTTTTGGAGAATTTG+AGG - chr5.2:47438861-47438880 MS.gene65645:CDS 35.0%
AAAACCTTGGCACTCAGTTA+AGG + chr5.2:47437371-47437390 None:intergenic 40.0%
AACTGAGGATATGTAGCTGT+TGG - chr5.2:47437918-47437937 MS.gene65645:intron 40.0%
AACTTTAGTGTTGTGTAGGG+AGG - chr5.2:47438038-47438057 MS.gene65645:intron 40.0%
AAGAACAAAAACGCCACCTT+CGG + chr5.2:47436725-47436744 None:intergenic 40.0%
AATGGAGAAAAGGGTCACAA+TGG - chr5.2:47438615-47438634 MS.gene65645:CDS 40.0%
ACCAGAGATAGAAAATGCAG+GGG - chr5.2:47438172-47438191 MS.gene65645:intron 40.0%
ACTTTAGTGTTGTGTAGGGA+GGG - chr5.2:47438039-47438058 MS.gene65645:intron 40.0%
AGACCAGAGATAGAAAATGC+AGG - chr5.2:47438170-47438189 MS.gene65645:intron 40.0%
AGGCTGGAATCGAATACTAT+TGG + chr5.2:47436572-47436591 None:intergenic 40.0%
AGGGTCACAATGGTTTGAAA+TGG - chr5.2:47438625-47438644 MS.gene65645:CDS 40.0%
ATCAGACCGAACATATTACC+CGG - chr5.2:47438673-47438692 MS.gene65645:CDS 40.0%
ATCCTTCATGACTACCATTG+AGG + chr5.2:47436592-47436611 None:intergenic 40.0%
ATGAGCCTTGACAATGAAGT+AGG + chr5.2:47438953-47438972 None:intergenic 40.0%
CACTCGAATCCATCTTACAA+TGG - chr5.2:47436824-47436843 MS.gene65645:CDS 40.0%
CATTGTCTGAGTTTGATCGT+AGG + chr5.2:47438599-47438618 None:intergenic 40.0%
CTACGATCAAACTCAGACAA+TGG - chr5.2:47438597-47438616 MS.gene65645:CDS 40.0%
CTATCTCTGGTCTGTTTCAT+TGG + chr5.2:47438163-47438182 None:intergenic 40.0%
CTCAACAAAAAGCTACGTCA+TGG - chr5.2:47438520-47438539 MS.gene65645:CDS 40.0%
CTCACATATTTAACTGGGTG+TGG + chr5.2:47438827-47438846 None:intergenic 40.0%
GACCAGAGATAGAAAATGCA+GGG - chr5.2:47438171-47438190 MS.gene65645:intron 40.0%
GCACTCAGTTAAGGTAGTTA+TGG + chr5.2:47437362-47437381 None:intergenic 40.0%
GTGGCAAATGGCAATTTATC+TGG + chr5.2:47437838-47437857 None:intergenic 40.0%
GTTATGGTCTCAATGGATCA+TGG + chr5.2:47437346-47437365 None:intergenic 40.0%
TCTTGCCTACTTCATTGTCA+AGG - chr5.2:47438945-47438964 MS.gene65645:CDS 40.0%
TTCATGGTTCCTCCAAAAAG+AGG - chr5.2:47437604-47437623 MS.gene65645:intron 40.0%
TTGTCTGAGTTTGATCGTAG+GGG + chr5.2:47438597-47438616 None:intergenic 40.0%
! AACATGTGTCCTCTTTTTGG+AGG + chr5.2:47437616-47437635 None:intergenic 40.0%
! GCGTTTTTGTTCTTGGTTAG+AGG - chr5.2:47436731-47436750 MS.gene65645:CDS 40.0%
!!! AAAACTTTTTTGAGGGGGAG+AGG - chr5.2:47437418-47437437 MS.gene65645:intron 40.0%
AACCAACCATGACCGTAGTA+TGG - chr5.2:47437520-47437539 MS.gene65645:intron 45.0%
ACTACCTTAACTGAGTGCCA+AGG - chr5.2:47437364-47437383 MS.gene65645:intron 45.0%
AGCCTCAATGGTAGTCATGA+AGG - chr5.2:47436587-47436606 MS.gene65645:CDS 45.0%
ATACTACGGTCATGGTTGGT+TGG + chr5.2:47437521-47437540 None:intergenic 45.0%
ATTCTCCTGCCATGAAACAC+AGG + chr5.2:47436866-47436885 None:intergenic 45.0%
CCACTGAAGTAGCTTACAAC+TGG - chr5.2:47437441-47437460 MS.gene65645:intron 45.0%
CCAGTTGTAAGCTACTTCAG+TGG + chr5.2:47437444-47437463 None:intergenic 45.0%
CTAGAAGGAGAAGGTAAGTG+AGG + chr5.2:47436439-47436458 None:intergenic 45.0%
CTAGCATGTGGTATCACACT+TGG - chr5.2:47436455-47436474 MS.gene65645:CDS 45.0%
CTTCAACTAGGTAGGTCATG+AGG - chr5.2:47437873-47437892 MS.gene65645:intron 45.0%
CTTCATTGTCAAGGCTCATG+AGG - chr5.2:47438954-47438973 MS.gene65645:CDS 45.0%
GGTCATGAGGACCAAAGTTA+AGG - chr5.2:47437886-47437905 MS.gene65645:intron 45.0%
GTAACCAGGTGAGTTAGTAC+CGG - chr5.2:47437271-47437290 MS.gene65645:intron 45.0%
GTATTCGATTCCAGCCTCAA+TGG - chr5.2:47436575-47436594 MS.gene65645:CDS 45.0%
GTGTGATACCACATGCTAGA+AGG + chr5.2:47436454-47436473 None:intergenic 45.0%
TACCACATGCTAGAAGGAGA+AGG + chr5.2:47436448-47436467 None:intergenic 45.0%
TACCTTCTCCTTCTAGCATG+TGG - chr5.2:47436443-47436462 MS.gene65645:CDS 45.0%
TTCATGACTACCATTGAGGC+TGG + chr5.2:47436588-47436607 None:intergenic 45.0%
TTCCATACTACGGTCATGGT+TGG + chr5.2:47437525-47437544 None:intergenic 45.0%
TTCTCCCATAGAGGAGCTAA+AGG + chr5.2:47436764-47436783 None:intergenic 45.0%
! GAAGGTGGCGTTTTTGTTCT+TGG - chr5.2:47436724-47436743 MS.gene65645:CDS 45.0%
! TACTACGGTCATGGTTGGTT+GGG + chr5.2:47437520-47437539 None:intergenic 45.0%
! TCCCCTGCATTTTCTATCTC+TGG + chr5.2:47438176-47438195 None:intergenic 45.0%
! TGTGCCTTTAGCTCCTCTAT+GGG - chr5.2:47436757-47436776 MS.gene65645:CDS 45.0%
!! ACTTGGGTTGACTGGTCAAA+GGG - chr5.2:47438797-47438816 MS.gene65645:CDS 45.0%
!! GAAGTTTGACTTGGGTTGAC+TGG - chr5.2:47438789-47438808 MS.gene65645:CDS 45.0%
!!! CAATATTTTTTAATTATTAT+AGG + chr5.2:47437248-47437267 None:intergenic 5.0%
ACCTTCGGAACTCGATCGAA+AGG + chr5.2:47436710-47436729 None:intergenic 50.0%
AGAGTCCTGTGTTTCATGGC+AGG - chr5.2:47436858-47436877 MS.gene65645:CDS 50.0%
CCATGACCGTAGTATGGAAG+AGG - chr5.2:47437526-47437545 MS.gene65645:intron 50.0%
CCTCTTCCATACTACGGTCA+TGG + chr5.2:47437529-47437548 None:intergenic 50.0%
GTGGAGAGTCCTGTGTTTCA+TGG - chr5.2:47436854-47436873 MS.gene65645:CDS 50.0%
GTTTCCGGTACTAACTCACC+TGG + chr5.2:47437278-47437297 None:intergenic 50.0%
TACGACCAGGCAAGTTCAGT+TGG - chr5.2:47438545-47438564 MS.gene65645:CDS 50.0%
TCCTTTCGATCGAGTTCCGA+AGG - chr5.2:47436706-47436725 MS.gene65645:CDS 50.0%
TGGCAGGAGAATTCCCAGTA+AGG - chr5.2:47436874-47436893 MS.gene65645:CDS 50.0%
TTTCGATCGAGTTCCGAAGG+TGG - chr5.2:47436709-47436728 MS.gene65645:CDS 50.0%
! CATAGAGGAGCTAAAGGCAC+AGG + chr5.2:47436758-47436777 None:intergenic 50.0%
! CTGTGCCTTTAGCTCCTCTA+TGG - chr5.2:47436756-47436775 MS.gene65645:CDS 50.0%
! GCTCATGAGGTTTGCTCCAA+AGG - chr5.2:47438967-47438986 MS.gene65645:CDS 50.0%
! GTTGGTTGGGTGGTTTGTGA+GGG + chr5.2:47437507-47437526 None:intergenic 50.0%
! TTGGTTGGGTGGTTTGTGAG+GGG + chr5.2:47437506-47437525 None:intergenic 50.0%
!! GACTTGGGTTGACTGGTCAA+AGG - chr5.2:47438796-47438815 MS.gene65645:CDS 50.0%
CAAGTTCAGTTGGACGCGGA+CGG - chr5.2:47438555-47438574 MS.gene65645:CDS 55.0%
CAGGCAAGTTCAGTTGGACG+CGG - chr5.2:47438551-47438570 MS.gene65645:CDS 55.0%
CTACGTCATGGCTTACGACC+AGG - chr5.2:47438532-47438551 MS.gene65645:CDS 55.0%
! CAAGAAGCGCGTTTGCTAGC+AGG + chr5.2:47438415-47438434 None:intergenic 55.0%
! GGTTGGTTGGGTGGTTTGTG+AGG + chr5.2:47437508-47437527 None:intergenic 55.0%
! TACGGTCATGGTTGGTTGGG+TGG + chr5.2:47437517-47437536 None:intergenic 55.0%
! TGGGTTGACTGGTCAAAGGG+TGG - chr5.2:47438800-47438819 MS.gene65645:CDS 55.0%
CGCGTCCAACTGAACTTGCC+TGG + chr5.2:47438553-47438572 None:intergenic 60.0%
! GTTTGCTAGCAGGCGACGCT+CGG + chr5.2:47438405-47438424 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 47436356 47439003 47436356 ID=MS.gene65645
chr5.2 mRNA 47436356 47439003 47436356 ID=MS.gene65645.t1;Parent=MS.gene65645
chr5.2 exon 47438464 47439003 47438464 ID=MS.gene65645.t1.exon1;Parent=MS.gene65645.t1
chr5.2 CDS 47438464 47439003 47438464 ID=cds.MS.gene65645.t1;Parent=MS.gene65645.t1
chr5.2 exon 47436356 47436991 47436356 ID=MS.gene65645.t1.exon2;Parent=MS.gene65645.t1
chr5.2 CDS 47436356 47436991 47436356 ID=cds.MS.gene65645.t1;Parent=MS.gene65645.t1
Gene Sequence

>MS.gene65645

ATGAAGAACTCAAATAATCAACAATCATCATTAAACACTATTTCAAGAAATTTCAATTCTCATCTTCATCTTATTCGTTTCCTCACTTACCTTCTCCTTCTAGCATGTGGTATCACACTTGGAATCATCATCAGTTTCTATCTTAAAAGCTTAAATTTTAATCTTCATTTCACTCAATTATCACAAAAAACAACACTTTTACCGTTACGCCAACCAATAGTATTCGATTCCAGCCTCAATGGTAGTCATGAAGGATTGAAGAACTTTATTGAGCCATCTCAAGTTGTACATGATTTGAGTGATGAAGAATTGTTATGGAGAGCTTCATTGACTCCTAAGATAGATGAATATCCTTTCGATCGAGTTCCGAAGGTGGCGTTTTTGTTCTTGGTTAGAGGTCCTGTGCCTTTAGCTCCTCTATGGGAGAAATTCTTCAAAGGGCATAAAGGGTATTACTCAATTTACGTGCACTCGAATCCATCTTACAATGGTTCTGAAGTGGAGAGTCCTGTGTTTCATGGCAGGAGAATTCCCAGTAAGGTTAGTGAATTTTTTTTATCTTGATATGGTTAACTTATGAATGAAAATTGTCATTGGTTTAATGAAGATTAAGATTGCTTAGTAGAAAATCAAAGAACAAATAAAGTAAGGGCATAACTAAGATCAAGTTTTTTACAATTTTATTACCATGTTTTCAAATCAAACAATTCTATGTGGATAGATAATATTTTCATTGAAAGAGTATACACACGTTTTAAATATGGTTGATAATTTAATGATAATTATATAAAAATTTGATTAAATTTGTGTGCCTAAGTAAATTGAATTAAGAGGAAAAGGGGGAGAATTAAATGAAGCAGAGCAGAGGGAGACAAATAGAGCTTTATGTCCTATAATAATTAAAAAATATTGAATGTAACCAGGTGAGTTAGTACCGGAAACACTTTCAATATGAAGTGTCGGTGTGACATGTACGTTTTAAGTTGGCCATGATCCATTGAGACCATAACTACCTTAACTGAGTGCCAAGGTTTTTTTAATCCTTGCCAAAAGAAAAGATAAAAAACTTTTTTGAGGGGGAGAGGCCACTGAAGTAGCTTACAACTGGACTTCTCATATGTCGCTCATGTGTTATAGTATTGGCACACCCCTCACAAACCACCCAACCAACCATGACCGTAGTATGGAAGAGGATAGTTTTCAGTTTGAATATCAGCTTATTATTAAAAAAATGTTTGTATATAGCATTTCATGGTTCCTCCAAAAAGAGGACACATGTTAGTTTGCACAAAAAATTAAGCAGATAAATGAGCCAGTATTCCATAGTCAAAATACTATTAGCACACTCACAAACTAGCAAAATGTAGAATTAATTTTTTTATTATTTTTTAAATAATTGAAAGAATAAAGGTTGAATTGATATTTTGTAAGTGTGCCTAAAAGATTTATACATGGTTTTGTGACTTTACAAGAATAATCCCAGATAAATTGCCATTTGCCACCTCATAGATTATAGTCTTCAACTAGGTAGGTCATGAGGACCAAAGTTAAGGCACAGTATTAACTGAGGATATGTAGCTGTTGGAAGTTTGGTGAAACATTACTAATAAATTCATTATTTGATATTTCCTAATTAGTTATCAATGCAATGCTCCATCTAAATTCCTACCACCTTTTAATGAAACTTTAGTGTTGTGTAGGGAGGGACCAATATGTAGAGTCTAAAGAGTGTAATGCAACCACAATGTGTAAAAAAATTAAATCGATTTGTAAATTTTATTCACTGCCATTTTGAATTAAGCTTCCAATGAAACAGACCAGAGATAGAAAATGCAGGGGAAAAATCTATAGAACTTAACCCAATTAGTGATCATGAGAAAATTAATTTCCTTTATGGTTTATTGTATACTTGTTTCAAATCTTAATTTTTAGGAAATTGCTAATAAATAGACTTCTAGTTCCATCAGTTTGTTTCAAAATGTAATCATAACCCTTCATCTGATATAATGCAGAAAGTAGAATGGGGAAAATTCAACATGATTGAAGCCGAGCGTCGCCTGCTAGCAAACGCGCTTCTTGATTTCTCAAACCAACGATTTGTTCTCATATCAGAATCATGCATACCACTATTCAACTTCTCAACAGTCTACTCTTATTTAATGAACTCAACAAAAAGCTACGTCATGGCTTACGACCAGGCAAGTTCAGTTGGACGCGGACGGTATAAAATTAAAATGTCCCCTACGATCAAACTCAGACAATGGAGAAAAGGGTCACAATGGTTTGAAATGGACAGAAATCTTGCGTTAGAAGTAATATCAGACCGAACATATTACCCGGTTTTCAGAAAATATTGCAATGGTTCATGTTATGCTGATGAGCATTATTTGCCAACTTTTGTTAGCATTAAGTTTTGGAAGAGCAATACAAATAGAAGTTTGACTTGGGTTGACTGGTCAAAGGGTGGACCACACCCAGTTAAATATGTGAGACCAGAGGTTACTTGTGAGTTTTTGGAGAATTTGAGGAATCAAACATGTAAGTATAATGGAAATAGCACAAATGTTTGTTATTTGTTTGCTAGGAAATTCTTGCCTACTTCATTGTCAAGGCTCATGAGGTTTGCTCCAAAGGTCATGCACTTATAA

Protein sequence

>MS.gene65645.t1

MKNSNNQQSSLNTISRNFNSHLHLIRFLTYLLLLACGITLGIIISFYLKSLNFNLHFTQLSQKTTLLPLRQPIVFDSSLNGSHEGLKNFIEPSQVVHDLSDEELLWRASLTPKIDEYPFDRVPKVAFLFLVRGPVPLAPLWEKFFKGHKGYYSIYVHSNPSYNGSEVESPVFHGRRIPSKKVEWGKFNMIEAERRLLANALLDFSNQRFVLISESCIPLFNFSTVYSYLMNSTKSYVMAYDQASSVGRGRYKIKMSPTIKLRQWRKGSQWFEMDRNLALEVISDRTYYPVFRKYCNGSCYADEHYLPTFVSIKFWKSNTNRSLTWVDWSKGGPHPVKYVRPEVTCEFLENLRNQTCKYNGNSTNVCYLFARKFLPTSLSRLMRFAPKVMHL