Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65645.t1 | XP_003614560.1 | 97.4 | 391 | 9 | 1 | 1 | 391 | 1 | 390 | 5.10E-222 | 780 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65645.t1 | Q65XS5 | 35.4 | 297 | 141 | 9 | 124 | 373 | 85 | 377 | 7.6e-41 | 169.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65645.t1 | G7JZH3 | 97.4 | 391 | 9 | 1 | 1 | 391 | 1 | 390 | 3.7e-222 | 780.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053866 | MS.gene65645 | 0.84014 | 1.04E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene072101 | MS.gene65645 | PPI |
MS.gene00579 | MS.gene65645 | PPI |
MS.gene002006 | MS.gene65645 | PPI |
MS.gene047241 | MS.gene65645 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65645.t1 | MTR_5g055480 | 97.442 | 391 | 9 | 1 | 1 | 391 | 1 | 390 | 0.0 | 789 |
MS.gene65645.t1 | MTR_1g110290 | 68.367 | 392 | 120 | 3 | 1 | 391 | 5 | 393 | 0.0 | 558 |
MS.gene65645.t1 | MTR_6g083830 | 54.436 | 417 | 164 | 5 | 1 | 391 | 3 | 419 | 6.92e-162 | 461 |
MS.gene65645.t1 | MTR_5g006920 | 50.355 | 423 | 176 | 4 | 1 | 391 | 1 | 421 | 8.86e-151 | 433 |
MS.gene65645.t1 | MTR_5g006930 | 53.046 | 394 | 174 | 4 | 1 | 391 | 1 | 386 | 1.50e-146 | 421 |
MS.gene65645.t1 | MTR_3g104840 | 48.780 | 410 | 172 | 8 | 1 | 391 | 3 | 393 | 2.71e-134 | 390 |
MS.gene65645.t1 | MTR_1g016880 | 50.145 | 345 | 164 | 3 | 40 | 382 | 28 | 366 | 5.44e-127 | 370 |
MS.gene65645.t1 | MTR_2g005350 | 53.595 | 306 | 140 | 1 | 86 | 389 | 131 | 436 | 7.09e-124 | 365 |
MS.gene65645.t1 | MTR_8g015500 | 52.787 | 305 | 142 | 2 | 89 | 391 | 109 | 413 | 1.33e-117 | 348 |
MS.gene65645.t1 | MTR_3g108740 | 41.875 | 320 | 149 | 7 | 92 | 382 | 60 | 371 | 2.79e-73 | 233 |
MS.gene65645.t1 | MTR_1g009960 | 39.938 | 323 | 166 | 6 | 87 | 384 | 73 | 392 | 1.70e-70 | 227 |
MS.gene65645.t1 | MTR_4g127550 | 39.339 | 333 | 164 | 7 | 82 | 384 | 63 | 387 | 1.71e-69 | 224 |
MS.gene65645.t1 | MTR_2g037620 | 39.446 | 289 | 140 | 5 | 123 | 384 | 97 | 377 | 4.72e-65 | 212 |
MS.gene65645.t1 | MTR_2g037600 | 42.105 | 285 | 139 | 5 | 123 | 384 | 105 | 386 | 5.16e-65 | 212 |
MS.gene65645.t1 | MTR_1g009960 | 41.392 | 273 | 150 | 4 | 87 | 351 | 73 | 343 | 8.46e-64 | 209 |
MS.gene65645.t1 | MTR_2g024120 | 36.909 | 317 | 155 | 9 | 108 | 382 | 46 | 359 | 2.99e-53 | 181 |
MS.gene65645.t1 | MTR_8g094180 | 36.246 | 309 | 144 | 9 | 123 | 382 | 55 | 359 | 3.05e-53 | 181 |
MS.gene65645.t1 | MTR_8g094180 | 37.218 | 266 | 132 | 6 | 123 | 356 | 55 | 317 | 5.66e-50 | 171 |
MS.gene65645.t1 | MTR_3g106930 | 35.276 | 326 | 191 | 9 | 78 | 389 | 55 | 374 | 5.12e-45 | 159 |
MS.gene65645.t1 | MTR_1g048320 | 38.889 | 288 | 145 | 10 | 123 | 389 | 64 | 341 | 1.98e-38 | 141 |
MS.gene65645.t1 | MTR_2g087610 | 34.783 | 299 | 151 | 11 | 124 | 389 | 78 | 365 | 2.06e-37 | 139 |
MS.gene65645.t1 | MTR_1g031060 | 37.931 | 290 | 147 | 9 | 123 | 389 | 80 | 359 | 2.78e-37 | 138 |
MS.gene65645.t1 | MTR_1g031080 | 35.484 | 248 | 130 | 8 | 165 | 389 | 49 | 289 | 3.91e-30 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65645.t1 | AT1G68390 | 64.309 | 311 | 107 | 3 | 85 | 391 | 98 | 408 | 4.19e-154 | 441 |
MS.gene65645.t1 | AT1G10280 | 46.970 | 396 | 181 | 6 | 22 | 389 | 16 | 410 | 3.11e-128 | 375 |
MS.gene65645.t1 | AT5G11730 | 53.846 | 312 | 142 | 2 | 80 | 389 | 73 | 384 | 2.01e-126 | 370 |
MS.gene65645.t1 | AT1G73810 | 49.268 | 410 | 182 | 8 | 1 | 389 | 12 | 416 | 5.24e-126 | 370 |
MS.gene65645.t1 | AT1G51770 | 52.353 | 340 | 159 | 3 | 54 | 391 | 54 | 392 | 8.35e-126 | 369 |
MS.gene65645.t1 | AT1G68380 | 50.815 | 368 | 167 | 7 | 30 | 390 | 31 | 391 | 4.41e-124 | 364 |
MS.gene65645.t1 | AT5G25970 | 51.258 | 318 | 150 | 3 | 77 | 389 | 68 | 385 | 1.86e-119 | 352 |
MS.gene65645.t1 | AT5G25970 | 51.258 | 318 | 150 | 3 | 77 | 389 | 68 | 385 | 1.86e-119 | 352 |
MS.gene65645.t1 | AT5G25970 | 51.258 | 318 | 150 | 3 | 77 | 389 | 68 | 385 | 1.86e-119 | 352 |
MS.gene65645.t1 | AT3G21310 | 48.225 | 338 | 168 | 3 | 54 | 389 | 49 | 381 | 3.96e-118 | 348 |
MS.gene65645.t1 | AT3G21310 | 48.225 | 338 | 168 | 3 | 54 | 389 | 49 | 381 | 3.96e-118 | 348 |
MS.gene65645.t1 | AT1G10880 | 52.759 | 290 | 135 | 2 | 98 | 386 | 93 | 381 | 1.79e-114 | 339 |
MS.gene65645.t1 | AT1G51770 | 47.647 | 340 | 148 | 4 | 54 | 391 | 54 | 365 | 1.26e-108 | 324 |
MS.gene65645.t1 | AT5G16170 | 42.971 | 377 | 190 | 4 | 32 | 389 | 37 | 407 | 3.20e-108 | 324 |
MS.gene65645.t1 | AT4G30060 | 39.329 | 328 | 160 | 7 | 84 | 382 | 70 | 387 | 1.26e-68 | 222 |
MS.gene65645.t1 | AT4G30060 | 39.329 | 328 | 160 | 7 | 84 | 382 | 70 | 387 | 1.26e-68 | 222 |
MS.gene65645.t1 | AT2G19160 | 38.066 | 331 | 168 | 7 | 84 | 386 | 67 | 388 | 3.94e-68 | 221 |
MS.gene65645.t1 | AT2G19160 | 38.066 | 331 | 168 | 7 | 84 | 386 | 67 | 388 | 3.94e-68 | 221 |
MS.gene65645.t1 | AT4G31350 | 41.034 | 290 | 148 | 4 | 123 | 391 | 88 | 375 | 1.39e-67 | 218 |
MS.gene65645.t1 | AT4G31350 | 41.034 | 290 | 148 | 4 | 123 | 391 | 88 | 375 | 1.39e-67 | 218 |
MS.gene65645.t1 | AT4G31350 | 41.034 | 290 | 148 | 4 | 123 | 391 | 88 | 375 | 1.39e-67 | 218 |
MS.gene65645.t1 | AT4G25870 | 40.190 | 316 | 161 | 5 | 96 | 386 | 70 | 382 | 3.28e-67 | 218 |
MS.gene65645.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 7.04e-64 | 209 |
MS.gene65645.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 7.04e-64 | 209 |
MS.gene65645.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 7.04e-64 | 209 |
MS.gene65645.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 7.04e-64 | 209 |
MS.gene65645.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 7.04e-64 | 209 |
MS.gene65645.t1 | AT3G21310 | 48.558 | 208 | 101 | 2 | 53 | 259 | 48 | 250 | 3.10e-63 | 204 |
MS.gene65645.t1 | AT4G31350 | 40.351 | 285 | 142 | 5 | 123 | 386 | 88 | 365 | 1.76e-62 | 205 |
MS.gene65645.t1 | AT5G14550 | 36.246 | 309 | 149 | 8 | 119 | 383 | 60 | 364 | 2.93e-54 | 184 |
MS.gene65645.t1 | AT5G14550 | 36.364 | 308 | 148 | 8 | 120 | 383 | 61 | 364 | 3.39e-54 | 184 |
MS.gene65645.t1 | AT5G14550 | 37.884 | 293 | 142 | 9 | 120 | 381 | 61 | 344 | 1.22e-53 | 181 |
MS.gene65645.t1 | AT1G11940 | 36.076 | 316 | 154 | 11 | 109 | 382 | 61 | 370 | 1.60e-51 | 177 |
MS.gene65645.t1 | AT1G62305 | 36.246 | 309 | 149 | 10 | 116 | 382 | 62 | 364 | 1.75e-51 | 177 |
MS.gene65645.t1 | AT5G25330 | 34.392 | 378 | 207 | 15 | 30 | 389 | 5 | 359 | 2.98e-49 | 171 |
MS.gene65645.t1 | AT3G52060 | 35.740 | 277 | 161 | 8 | 123 | 389 | 74 | 343 | 7.57e-48 | 166 |
MS.gene65645.t1 | AT5G14550 | 38.062 | 289 | 142 | 10 | 120 | 383 | 61 | 337 | 8.18e-48 | 166 |
MS.gene65645.t1 | AT1G62305 | 42.466 | 219 | 99 | 6 | 116 | 312 | 62 | 275 | 1.29e-46 | 162 |
MS.gene65645.t1 | AT1G11940 | 45.833 | 192 | 95 | 6 | 109 | 296 | 61 | 247 | 2.27e-45 | 157 |
MS.gene65645.t1 | AT1G62305 | 33.010 | 309 | 135 | 10 | 116 | 382 | 62 | 340 | 3.05e-38 | 141 |
MS.gene65645.t1 | AT5G22070 | 34.667 | 300 | 151 | 12 | 124 | 389 | 71 | 359 | 3.62e-37 | 138 |
MS.gene65645.t1 | AT4G32290 | 35.417 | 288 | 160 | 7 | 124 | 389 | 93 | 376 | 1.58e-34 | 132 |
Find 74 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGTGCCTTTAGCTCCTCTA+TGG | 0.278504 | 5.2:-47438581 | MS.gene65645:CDS |
TCTGGTCTCACATATTTAAC+TGG | 0.301424 | 5.2:+47436507 | None:intergenic |
AAAGGATATTCATCTATCTT+AGG | 0.344852 | 5.2:+47438648 | None:intergenic |
AATCAAACATGTAAGTATAA+TGG | 0.347050 | 5.2:-47436453 | MS.gene65645:CDS |
AAATTCTTCAAAGGGCATAA+AGG | 0.387212 | 5.2:-47438555 | MS.gene65645:CDS |
AGGCTGGAATCGAATACTAT+TGG | 0.391723 | 5.2:+47438768 | None:intergenic |
GTTTATAAGTGCATGACCTT+TGG | 0.392410 | 5.2:+47436354 | None:intergenic |
ATGTTTGTTATTTGTTTGCT+AGG | 0.408942 | 5.2:-47436419 | MS.gene65645:CDS |
AAACTCAGACAATGGAGAAA+AGG | 0.424464 | 5.2:-47436732 | MS.gene65645:CDS |
AGGGTCACAATGGTTTGAAA+TGG | 0.427955 | 5.2:-47436712 | MS.gene65645:CDS |
CAAGAAGCGCGTTTGCTAGC+AGG | 0.432228 | 5.2:+47436925 | None:intergenic |
AATTCTTCAAAGGGCATAAA+GGG | 0.434327 | 5.2:-47438554 | MS.gene65645:CDS |
GAAGTTTGACTTGGGTTGAC+TGG | 0.435516 | 5.2:-47436548 | MS.gene65645:CDS |
TATAATGCAGAAAGTAGAAT+GGG | 0.436466 | 5.2:-47436979 | MS.gene65645:intron |
GTTTGCTAGCAGGCGACGCT+CGG | 0.437681 | 5.2:+47436935 | None:intergenic |
AACTTAATGCTAACAAAAGT+TGG | 0.443687 | 5.2:+47436591 | None:intergenic |
TGAAAACCGGGTAATATGTT+CGG | 0.445181 | 5.2:+47436658 | None:intergenic |
AACTCAGACAATGGAGAAAA+GGG | 0.454574 | 5.2:-47436731 | MS.gene65645:CDS |
CGCGTCCAACTGAACTTGCC+TGG | 0.457072 | 5.2:+47436787 | None:intergenic |
GTGTGATACCACATGCTAGA+AGG | 0.467681 | 5.2:+47438886 | None:intergenic |
GCTCATGAGGTTTGCTCCAA+AGG | 0.468695 | 5.2:-47436370 | MS.gene65645:CDS |
ACTTGGGTTGACTGGTCAAA+GGG | 0.471540 | 5.2:-47436540 | MS.gene65645:CDS |
TGAGTGATGAAGAATTGTTA+TGG | 0.473976 | 5.2:-47438686 | MS.gene65645:CDS |
ATTGTCTGAGTTTGATCGTA+GGG | 0.474052 | 5.2:+47436742 | None:intergenic |
CTGATATGAGAACAAATCGT+TGG | 0.474721 | 5.2:+47436892 | None:intergenic |
GTGGAGAGTCCTGTGTTTCA+TGG | 0.483852 | 5.2:-47438483 | MS.gene65645:CDS |
TTGAAGAATTTCTCCCATAG+AGG | 0.489698 | 5.2:+47438567 | None:intergenic |
AATACTATTGGTTGGCGTAA+CGG | 0.490927 | 5.2:+47438780 | None:intergenic |
TTCTCCCATAGAGGAGCTAA+AGG | 0.493380 | 5.2:+47438576 | None:intergenic |
GACTTGGGTTGACTGGTCAA+AGG | 0.498955 | 5.2:-47436541 | MS.gene65645:CDS |
ACTTCAGAACCATTGTAAGA+TGG | 0.502479 | 5.2:+47438504 | None:intergenic |
CTAGCATGTGGTATCACACT+TGG | 0.505414 | 5.2:-47438882 | MS.gene65645:CDS |
CTCACATATTTAACTGGGTG+TGG | 0.508350 | 5.2:+47436513 | None:intergenic |
AGCCTCAATGGTAGTCATGA+AGG | 0.515851 | 5.2:-47438750 | MS.gene65645:CDS |
TACAAATAGAAGTTTGACTT+GGG | 0.522087 | 5.2:-47436556 | MS.gene65645:CDS |
ATATAATGCAGAAAGTAGAA+TGG | 0.524034 | 5.2:-47436980 | MS.gene65645:intron |
TATGGGAGAAATTCTTCAAA+GGG | 0.525258 | 5.2:-47438563 | MS.gene65645:CDS |
CTACGTCATGGCTTACGACC+AGG | 0.528541 | 5.2:-47436805 | MS.gene65645:CDS |
TACGACCAGGCAAGTTCAGT+TGG | 0.529529 | 5.2:-47436792 | MS.gene65645:CDS |
TACCTTCTCCTTCTAGCATG+TGG | 0.532227 | 5.2:-47438894 | MS.gene65645:CDS |
TTCATGACTACCATTGAGGC+TGG | 0.539090 | 5.2:+47438752 | None:intergenic |
ATGAGCCTTGACAATGAAGT+AGG | 0.542080 | 5.2:+47436387 | None:intergenic |
GTATTCGATTCCAGCCTCAA+TGG | 0.543962 | 5.2:-47438762 | MS.gene65645:CDS |
AGAGTCCTGTGTTTCATGGC+AGG | 0.545935 | 5.2:-47438479 | MS.gene65645:CDS |
TGGCAGGAGAATTCCCAGTA+AGG | 0.548902 | 5.2:-47438463 | MS.gene65645:intron |
TCTTGCCTACTTCATTGTCA+AGG | 0.554046 | 5.2:-47436392 | MS.gene65645:CDS |
ATACAAATAGAAGTTTGACT+TGG | 0.556289 | 5.2:-47436557 | MS.gene65645:CDS |
CTATGGGAGAAATTCTTCAA+AGG | 0.556837 | 5.2:-47438564 | MS.gene65645:CDS |
TCCTTTCGATCGAGTTCCGA+AGG | 0.557813 | 5.2:-47438631 | MS.gene65645:CDS |
ATCCTTCATGACTACCATTG+AGG | 0.559449 | 5.2:+47438748 | None:intergenic |
ATCTTACAATGGTTCTGAAG+TGG | 0.559601 | 5.2:-47438502 | MS.gene65645:CDS |
TGTGCCTTTAGCTCCTCTAT+GGG | 0.561241 | 5.2:-47438580 | MS.gene65645:CDS |
CTACGATCAAACTCAGACAA+TGG | 0.571848 | 5.2:-47436740 | MS.gene65645:CDS |
CTTCATTGTCAAGGCTCATG+AGG | 0.577302 | 5.2:-47436383 | MS.gene65645:CDS |
TGGAATCGAATACTATTGGT+TGG | 0.581530 | 5.2:+47438772 | None:intergenic |
CATAGAGGAGCTAAAGGCAC+AGG | 0.582656 | 5.2:+47438582 | None:intergenic |
CTGGTCTCACATATTTAACT+GGG | 0.587265 | 5.2:+47436508 | None:intergenic |
AAATCATGTACAACTTGAGA+TGG | 0.588695 | 5.2:+47438708 | None:intergenic |
CATTGTCTGAGTTTGATCGT+AGG | 0.589831 | 5.2:+47436741 | None:intergenic |
ATTCTCCTGCCATGAAACAC+AGG | 0.591758 | 5.2:+47438474 | None:intergenic |
ACCTTCGGAACTCGATCGAA+AGG | 0.595763 | 5.2:+47438630 | None:intergenic |
CAAGTTCAGTTGGACGCGGA+CGG | 0.618278 | 5.2:-47436782 | MS.gene65645:CDS |
CTAGAAGGAGAAGGTAAGTG+AGG | 0.623171 | 5.2:+47438901 | None:intergenic |
ATCAGACCGAACATATTACC+CGG | 0.623786 | 5.2:-47436664 | MS.gene65645:CDS |
TTTCGATCGAGTTCCGAAGG+TGG | 0.623922 | 5.2:-47438628 | MS.gene65645:CDS |
CACTCGAATCCATCTTACAA+TGG | 0.632327 | 5.2:-47438513 | MS.gene65645:CDS |
ACTGTTGAGAAGTTGAATAG+TGG | 0.634685 | 5.2:+47436858 | None:intergenic |
CAGGCAAGTTCAGTTGGACG+CGG | 0.637111 | 5.2:-47436786 | MS.gene65645:CDS |
TGGGTTGACTGGTCAAAGGG+TGG | 0.638199 | 5.2:-47436537 | MS.gene65645:CDS |
AATGGAGAAAAGGGTCACAA+TGG | 0.647572 | 5.2:-47436722 | MS.gene65645:CDS |
TACCACATGCTAGAAGGAGA+AGG | 0.656558 | 5.2:+47438892 | None:intergenic |
ATAATGCAGAAAGTAGAATG+GGG | 0.668247 | 5.2:-47436978 | MS.gene65645:intron |
TTGTCTGAGTTTGATCGTAG+GGG | 0.668407 | 5.2:+47436743 | None:intergenic |
AGTTAAATATGTGAGACCAG+AGG | 0.732458 | 5.2:-47436505 | MS.gene65645:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAATAATTGAAAGAATAA+AGG | - | chr5.2:47437744-47437763 | MS.gene65645:intron | 10.0% |
!!! | AAAGATAAAAAACTTTTTTG+AGG | - | chr5.2:47437410-47437429 | MS.gene65645:intron | 15.0% |
!!! | AAGATAAAAAACTTTTTTGA+GGG | - | chr5.2:47437411-47437430 | MS.gene65645:intron | 15.0% |
!!! | AAGTTTTTTATCTTTTCTTT+TGG | + | chr5.2:47437405-47437424 | None:intergenic | 15.0% |
!!! | GAATTTTTTTTATCTTGATA+TGG | - | chr5.2:47436902-47436921 | MS.gene65645:CDS | 15.0% |
!!! | TGTTTCAAATCTTAATTTTT+AGG | - | chr5.2:47438266-47438285 | MS.gene65645:intron | 15.0% |
!!! | TTTAATTTTTTTACACATTG+TGG | + | chr5.2:47438098-47438117 | None:intergenic | 15.0% |
!! | AAAAAATATTGAATGTAACC+AGG | - | chr5.2:47437257-47437276 | MS.gene65645:intron | 20.0% |
!! | AAATTGAATTAAGAGGAAAA+GGG | - | chr5.2:47437174-47437193 | MS.gene65645:intron | 20.0% |
!! | AACACTAAAGTTTCATTAAA+AGG | + | chr5.2:47438030-47438049 | None:intergenic | 20.0% |
!! | AAGTATACAATAAACCATAA+AGG | + | chr5.2:47438247-47438266 | None:intergenic | 20.0% |
!! | AATCAAACATGTAAGTATAA+TGG | - | chr5.2:47438884-47438903 | MS.gene65645:CDS | 20.0% |
!! | ATCAAAGAACAAATAAAGTA+AGG | - | chr5.2:47436984-47437003 | MS.gene65645:intron | 20.0% |
!! | GAGAAAATTAATTTCCTTTA+TGG | - | chr5.2:47438230-47438249 | MS.gene65645:intron | 20.0% |
!! | TAAATTGAATTAAGAGGAAA+AGG | - | chr5.2:47437173-47437192 | MS.gene65645:intron | 20.0% |
!! | TCAAAGAACAAATAAAGTAA+GGG | - | chr5.2:47436985-47437004 | MS.gene65645:intron | 20.0% |
!! | TTATGAATGAAAATTGTCAT+TGG | - | chr5.2:47436930-47436949 | MS.gene65645:CDS | 20.0% |
!!! | AAACCATGTATAAATCTTTT+AGG | + | chr5.2:47437794-47437813 | None:intergenic | 20.0% |
!!! | AATTGTTTGATTTGAAAACA+TGG | + | chr5.2:47437045-47437064 | None:intergenic | 20.0% |
!!! | AGATAAAAAACTTTTTTGAG+GGG | - | chr5.2:47437412-47437431 | MS.gene65645:intron | 20.0% |
! | AAAAAATTCACTAACCTTAC+TGG | + | chr5.2:47436891-47436910 | None:intergenic | 25.0% |
! | AAAAATTCACTAACCTTACT+GGG | + | chr5.2:47436890-47436909 | None:intergenic | 25.0% |
! | AAAGGATATTCATCTATCTT+AGG | + | chr5.2:47436692-47436711 | None:intergenic | 25.0% |
! | AACTTAATGCTAACAAAAGT+TGG | + | chr5.2:47438749-47438768 | None:intergenic | 25.0% |
! | AATTGAATTAAGAGGAAAAG+GGG | - | chr5.2:47437175-47437194 | MS.gene65645:intron | 25.0% |
! | ACTAAAGTTTCATTAAAAGG+TGG | + | chr5.2:47438027-47438046 | None:intergenic | 25.0% |
! | ATACAAATAGAAGTTTGACT+TGG | - | chr5.2:47438780-47438799 | MS.gene65645:CDS | 25.0% |
! | ATAGATTATAGTCTTCAACT+AGG | - | chr5.2:47437861-47437880 | MS.gene65645:intron | 25.0% |
! | ATATAATGCAGAAAGTAGAA+TGG | - | chr5.2:47438357-47438376 | MS.gene65645:intron | 25.0% |
! | ATTGGAAGCTTAATTCAAAA+TGG | + | chr5.2:47438145-47438164 | None:intergenic | 25.0% |
! | CCTAAGTAAATTGAATTAAG+AGG | - | chr5.2:47437167-47437186 | MS.gene65645:intron | 25.0% |
! | CCTCTTAATTCAATTTACTT+AGG | + | chr5.2:47437170-47437189 | None:intergenic | 25.0% |
! | TATAATGCAGAAAGTAGAAT+GGG | - | chr5.2:47438358-47438377 | MS.gene65645:intron | 25.0% |
! | TCAAATCAAACAATTCTATG+TGG | - | chr5.2:47437050-47437069 | MS.gene65645:intron | 25.0% |
! | TGTTTGTATATAGCATTTCA+TGG | - | chr5.2:47437588-47437607 | MS.gene65645:intron | 25.0% |
!! | ATTTTCTCATGATCACTAAT+TGG | + | chr5.2:47438218-47438237 | None:intergenic | 25.0% |
!! | CATTGCATTGATAACTAATT+AGG | + | chr5.2:47437987-47438006 | None:intergenic | 25.0% |
!! | CTTTTGTTAGCATTAAGTTT+TGG | - | chr5.2:47438750-47438769 | MS.gene65645:CDS | 25.0% |
!! | GTTTTCAGAAAATATTGCAA+TGG | - | chr5.2:47438695-47438714 | MS.gene65645:CDS | 25.0% |
!! | TACAAATAGAAGTTTGACTT+GGG | - | chr5.2:47438781-47438800 | MS.gene65645:CDS | 25.0% |
!! | TTTTATCTTTTCTTTTGGCA+AGG | + | chr5.2:47437400-47437419 | None:intergenic | 25.0% |
!! | TTTTCTCATGATCACTAATT+GGG | + | chr5.2:47438217-47438236 | None:intergenic | 25.0% |
!!! | ATGTTTGTTATTTGTTTGCT+AGG | - | chr5.2:47438918-47438937 | MS.gene65645:CDS | 25.0% |
!!! | GATAAAAAACTTTTTTGAGG+GGG | - | chr5.2:47437413-47437432 | MS.gene65645:intron | 25.0% |
!!! | GTATACACACGTTTTAAATA+TGG | - | chr5.2:47437097-47437116 | MS.gene65645:intron | 25.0% |
!!! | TACATTTTGAAACAAACTGA+TGG | + | chr5.2:47438319-47438338 | None:intergenic | 25.0% |
!!! | TGCTAATAGTATTTTGACTA+TGG | + | chr5.2:47437679-47437698 | None:intergenic | 25.0% |
!!! | TTGCAATATTTTCTGAAAAC+CGG | + | chr5.2:47438695-47438714 | None:intergenic | 25.0% |
AAATCATGTACAACTTGAGA+TGG | + | chr5.2:47436632-47436651 | None:intergenic | 30.0% | |
AAGTTTCATTAAAAGGTGGT+AGG | + | chr5.2:47438023-47438042 | None:intergenic | 30.0% | |
ACACTTTCAATATGAAGTGT+CGG | - | chr5.2:47437296-47437315 | MS.gene65645:intron | 30.0% | |
ACTCTTTAGACTCTACATAT+TGG | + | chr5.2:47438066-47438085 | None:intergenic | 30.0% | |
ATAATGCAGAAAGTAGAATG+GGG | - | chr5.2:47438359-47438378 | MS.gene65645:intron | 30.0% | |
ATGAAACTTTAGTGTTGTGT+AGG | - | chr5.2:47438034-47438053 | MS.gene65645:intron | 30.0% | |
ATTATAGTCTTCAACTAGGT+AGG | - | chr5.2:47437865-47437884 | MS.gene65645:intron | 30.0% | |
ATTGAATTAAGAGGAAAAGG+GGG | - | chr5.2:47437176-47437195 | MS.gene65645:intron | 30.0% | |
GTGCCTAAAAGATTTATACA+TGG | - | chr5.2:47437788-47437807 | MS.gene65645:intron | 30.0% | |
GTTGAAGACTATAATCTATG+AGG | + | chr5.2:47437860-47437879 | None:intergenic | 30.0% | |
TATGGGAGAAATTCTTCAAA+GGG | - | chr5.2:47436774-47436793 | MS.gene65645:CDS | 30.0% | |
TCTGCATTATATCAGATGAA+GGG | + | chr5.2:47438349-47438368 | None:intergenic | 30.0% | |
TGAAACTTTAGTGTTGTGTA+GGG | - | chr5.2:47438035-47438054 | MS.gene65645:intron | 30.0% | |
TGAGTGATGAAGAATTGTTA+TGG | - | chr5.2:47436651-47436670 | MS.gene65645:CDS | 30.0% | |
TTAATACTGTGCCTTAACTT+TGG | + | chr5.2:47437900-47437919 | None:intergenic | 30.0% | |
TTCTGCATTATATCAGATGA+AGG | + | chr5.2:47438350-47438369 | None:intergenic | 30.0% | |
! | AAATTCTTCAAAGGGCATAA+AGG | - | chr5.2:47436782-47436801 | MS.gene65645:CDS | 30.0% |
! | AATTCTTCAAAGGGCATAAA+GGG | - | chr5.2:47436783-47436802 | MS.gene65645:CDS | 30.0% |
!! | CTTCATATTGAAAGTGTTTC+CGG | + | chr5.2:47437293-47437312 | None:intergenic | 30.0% |
!! | TGCAATATTTTCTGAAAACC+GGG | + | chr5.2:47438694-47438713 | None:intergenic | 30.0% |
!!! | GTATTTTGACTATGGAATAC+TGG | + | chr5.2:47437671-47437690 | None:intergenic | 30.0% |
AAAAACTCACAAGTAACCTC+TGG | + | chr5.2:47438851-47438870 | None:intergenic | 35.0% | |
AAACTCAGACAATGGAGAAA+AGG | - | chr5.2:47438605-47438624 | MS.gene65645:CDS | 35.0% | |
AAAGGTGGTAGGAATTTAGA+TGG | + | chr5.2:47438012-47438031 | None:intergenic | 35.0% | |
AACTATCCTCTTCCATACTA+CGG | + | chr5.2:47437535-47437554 | None:intergenic | 35.0% | |
AACTCAGACAATGGAGAAAA+GGG | - | chr5.2:47438606-47438625 | MS.gene65645:CDS | 35.0% | |
AATTAAATGAAGCAGAGCAG+AGG | - | chr5.2:47437201-47437220 | MS.gene65645:intron | 35.0% | |
ACTGTTGAGAAGTTGAATAG+TGG | + | chr5.2:47438482-47438501 | None:intergenic | 35.0% | |
ACTTCAGAACCATTGTAAGA+TGG | + | chr5.2:47436836-47436855 | None:intergenic | 35.0% | |
AGTTAAATATGTGAGACCAG+AGG | - | chr5.2:47438832-47438851 | MS.gene65645:CDS | 35.0% | |
ATAATCTATGAGGTGGCAAA+TGG | + | chr5.2:47437850-47437869 | None:intergenic | 35.0% | |
ATATGTAGCTGTTGGAAGTT+TGG | - | chr5.2:47437926-47437945 | MS.gene65645:intron | 35.0% | |
ATTAAATGAAGCAGAGCAGA+GGG | - | chr5.2:47437202-47437221 | MS.gene65645:intron | 35.0% | |
ATTGTCTGAGTTTGATCGTA+GGG | + | chr5.2:47438598-47438617 | None:intergenic | 35.0% | |
CTATGGGAGAAATTCTTCAA+AGG | - | chr5.2:47436773-47436792 | MS.gene65645:CDS | 35.0% | |
CTGATATGAGAACAAATCGT+TGG | + | chr5.2:47438448-47438467 | None:intergenic | 35.0% | |
CTGGTCTCACATATTTAACT+GGG | + | chr5.2:47438832-47438851 | None:intergenic | 35.0% | |
GAAGACTATAATCTATGAGG+TGG | + | chr5.2:47437857-47437876 | None:intergenic | 35.0% | |
GGCAAGGATTAAAAAAACCT+TGG | + | chr5.2:47437384-47437403 | None:intergenic | 35.0% | |
TAAGGTAGTTATGGTCTCAA+TGG | + | chr5.2:47437353-47437372 | None:intergenic | 35.0% | |
TCGCTCATGTGTTATAGTAT+TGG | - | chr5.2:47437476-47437495 | MS.gene65645:intron | 35.0% | |
TCTGGTCTCACATATTTAAC+TGG | + | chr5.2:47438833-47438852 | None:intergenic | 35.0% | |
TGAAAACCGGGTAATATGTT+CGG | + | chr5.2:47438682-47438701 | None:intergenic | 35.0% | |
TGGAATCGAATACTATTGGT+TGG | + | chr5.2:47436568-47436587 | None:intergenic | 35.0% | |
TGGCAAATGGCAATTTATCT+GGG | + | chr5.2:47437837-47437856 | None:intergenic | 35.0% | |
TTAAGGCACAGTATTAACTG+AGG | - | chr5.2:47437903-47437922 | MS.gene65645:intron | 35.0% | |
TTGAAGAATTTCTCCCATAG+AGG | + | chr5.2:47436773-47436792 | None:intergenic | 35.0% | |
! | AATACTATTGGTTGGCGTAA+CGG | + | chr5.2:47436560-47436579 | None:intergenic | 35.0% |
! | ACTAACATGTGTCCTCTTTT+TGG | + | chr5.2:47437619-47437638 | None:intergenic | 35.0% |
! | AGAGGTTACTTGTGAGTTTT+TGG | - | chr5.2:47438850-47438869 | MS.gene65645:CDS | 35.0% |
!! | ATCTTACAATGGTTCTGAAG+TGG | - | chr5.2:47436835-47436854 | MS.gene65645:CDS | 35.0% |
!! | GTGACATGTACGTTTTAAGT+TGG | - | chr5.2:47437320-47437339 | MS.gene65645:intron | 35.0% |
!! | GTGAGTTTTTGGAGAATTTG+AGG | - | chr5.2:47438861-47438880 | MS.gene65645:CDS | 35.0% |
AAAACCTTGGCACTCAGTTA+AGG | + | chr5.2:47437371-47437390 | None:intergenic | 40.0% | |
AACTGAGGATATGTAGCTGT+TGG | - | chr5.2:47437918-47437937 | MS.gene65645:intron | 40.0% | |
AACTTTAGTGTTGTGTAGGG+AGG | - | chr5.2:47438038-47438057 | MS.gene65645:intron | 40.0% | |
AAGAACAAAAACGCCACCTT+CGG | + | chr5.2:47436725-47436744 | None:intergenic | 40.0% | |
AATGGAGAAAAGGGTCACAA+TGG | - | chr5.2:47438615-47438634 | MS.gene65645:CDS | 40.0% | |
ACCAGAGATAGAAAATGCAG+GGG | - | chr5.2:47438172-47438191 | MS.gene65645:intron | 40.0% | |
ACTTTAGTGTTGTGTAGGGA+GGG | - | chr5.2:47438039-47438058 | MS.gene65645:intron | 40.0% | |
AGACCAGAGATAGAAAATGC+AGG | - | chr5.2:47438170-47438189 | MS.gene65645:intron | 40.0% | |
AGGCTGGAATCGAATACTAT+TGG | + | chr5.2:47436572-47436591 | None:intergenic | 40.0% | |
AGGGTCACAATGGTTTGAAA+TGG | - | chr5.2:47438625-47438644 | MS.gene65645:CDS | 40.0% | |
ATCAGACCGAACATATTACC+CGG | - | chr5.2:47438673-47438692 | MS.gene65645:CDS | 40.0% | |
ATCCTTCATGACTACCATTG+AGG | + | chr5.2:47436592-47436611 | None:intergenic | 40.0% | |
ATGAGCCTTGACAATGAAGT+AGG | + | chr5.2:47438953-47438972 | None:intergenic | 40.0% | |
CACTCGAATCCATCTTACAA+TGG | - | chr5.2:47436824-47436843 | MS.gene65645:CDS | 40.0% | |
CATTGTCTGAGTTTGATCGT+AGG | + | chr5.2:47438599-47438618 | None:intergenic | 40.0% | |
CTACGATCAAACTCAGACAA+TGG | - | chr5.2:47438597-47438616 | MS.gene65645:CDS | 40.0% | |
CTATCTCTGGTCTGTTTCAT+TGG | + | chr5.2:47438163-47438182 | None:intergenic | 40.0% | |
CTCAACAAAAAGCTACGTCA+TGG | - | chr5.2:47438520-47438539 | MS.gene65645:CDS | 40.0% | |
CTCACATATTTAACTGGGTG+TGG | + | chr5.2:47438827-47438846 | None:intergenic | 40.0% | |
GACCAGAGATAGAAAATGCA+GGG | - | chr5.2:47438171-47438190 | MS.gene65645:intron | 40.0% | |
GCACTCAGTTAAGGTAGTTA+TGG | + | chr5.2:47437362-47437381 | None:intergenic | 40.0% | |
GTGGCAAATGGCAATTTATC+TGG | + | chr5.2:47437838-47437857 | None:intergenic | 40.0% | |
GTTATGGTCTCAATGGATCA+TGG | + | chr5.2:47437346-47437365 | None:intergenic | 40.0% | |
TCTTGCCTACTTCATTGTCA+AGG | - | chr5.2:47438945-47438964 | MS.gene65645:CDS | 40.0% | |
TTCATGGTTCCTCCAAAAAG+AGG | - | chr5.2:47437604-47437623 | MS.gene65645:intron | 40.0% | |
TTGTCTGAGTTTGATCGTAG+GGG | + | chr5.2:47438597-47438616 | None:intergenic | 40.0% | |
! | AACATGTGTCCTCTTTTTGG+AGG | + | chr5.2:47437616-47437635 | None:intergenic | 40.0% |
! | GCGTTTTTGTTCTTGGTTAG+AGG | - | chr5.2:47436731-47436750 | MS.gene65645:CDS | 40.0% |
!!! | AAAACTTTTTTGAGGGGGAG+AGG | - | chr5.2:47437418-47437437 | MS.gene65645:intron | 40.0% |
AACCAACCATGACCGTAGTA+TGG | - | chr5.2:47437520-47437539 | MS.gene65645:intron | 45.0% | |
ACTACCTTAACTGAGTGCCA+AGG | - | chr5.2:47437364-47437383 | MS.gene65645:intron | 45.0% | |
AGCCTCAATGGTAGTCATGA+AGG | - | chr5.2:47436587-47436606 | MS.gene65645:CDS | 45.0% | |
ATACTACGGTCATGGTTGGT+TGG | + | chr5.2:47437521-47437540 | None:intergenic | 45.0% | |
ATTCTCCTGCCATGAAACAC+AGG | + | chr5.2:47436866-47436885 | None:intergenic | 45.0% | |
CCACTGAAGTAGCTTACAAC+TGG | - | chr5.2:47437441-47437460 | MS.gene65645:intron | 45.0% | |
CCAGTTGTAAGCTACTTCAG+TGG | + | chr5.2:47437444-47437463 | None:intergenic | 45.0% | |
CTAGAAGGAGAAGGTAAGTG+AGG | + | chr5.2:47436439-47436458 | None:intergenic | 45.0% | |
CTAGCATGTGGTATCACACT+TGG | - | chr5.2:47436455-47436474 | MS.gene65645:CDS | 45.0% | |
CTTCAACTAGGTAGGTCATG+AGG | - | chr5.2:47437873-47437892 | MS.gene65645:intron | 45.0% | |
CTTCATTGTCAAGGCTCATG+AGG | - | chr5.2:47438954-47438973 | MS.gene65645:CDS | 45.0% | |
GGTCATGAGGACCAAAGTTA+AGG | - | chr5.2:47437886-47437905 | MS.gene65645:intron | 45.0% | |
GTAACCAGGTGAGTTAGTAC+CGG | - | chr5.2:47437271-47437290 | MS.gene65645:intron | 45.0% | |
GTATTCGATTCCAGCCTCAA+TGG | - | chr5.2:47436575-47436594 | MS.gene65645:CDS | 45.0% | |
GTGTGATACCACATGCTAGA+AGG | + | chr5.2:47436454-47436473 | None:intergenic | 45.0% | |
TACCACATGCTAGAAGGAGA+AGG | + | chr5.2:47436448-47436467 | None:intergenic | 45.0% | |
TACCTTCTCCTTCTAGCATG+TGG | - | chr5.2:47436443-47436462 | MS.gene65645:CDS | 45.0% | |
TTCATGACTACCATTGAGGC+TGG | + | chr5.2:47436588-47436607 | None:intergenic | 45.0% | |
TTCCATACTACGGTCATGGT+TGG | + | chr5.2:47437525-47437544 | None:intergenic | 45.0% | |
TTCTCCCATAGAGGAGCTAA+AGG | + | chr5.2:47436764-47436783 | None:intergenic | 45.0% | |
! | GAAGGTGGCGTTTTTGTTCT+TGG | - | chr5.2:47436724-47436743 | MS.gene65645:CDS | 45.0% |
! | TACTACGGTCATGGTTGGTT+GGG | + | chr5.2:47437520-47437539 | None:intergenic | 45.0% |
! | TCCCCTGCATTTTCTATCTC+TGG | + | chr5.2:47438176-47438195 | None:intergenic | 45.0% |
! | TGTGCCTTTAGCTCCTCTAT+GGG | - | chr5.2:47436757-47436776 | MS.gene65645:CDS | 45.0% |
!! | ACTTGGGTTGACTGGTCAAA+GGG | - | chr5.2:47438797-47438816 | MS.gene65645:CDS | 45.0% |
!! | GAAGTTTGACTTGGGTTGAC+TGG | - | chr5.2:47438789-47438808 | MS.gene65645:CDS | 45.0% |
!!! | CAATATTTTTTAATTATTAT+AGG | + | chr5.2:47437248-47437267 | None:intergenic | 5.0% |
ACCTTCGGAACTCGATCGAA+AGG | + | chr5.2:47436710-47436729 | None:intergenic | 50.0% | |
AGAGTCCTGTGTTTCATGGC+AGG | - | chr5.2:47436858-47436877 | MS.gene65645:CDS | 50.0% | |
CCATGACCGTAGTATGGAAG+AGG | - | chr5.2:47437526-47437545 | MS.gene65645:intron | 50.0% | |
CCTCTTCCATACTACGGTCA+TGG | + | chr5.2:47437529-47437548 | None:intergenic | 50.0% | |
GTGGAGAGTCCTGTGTTTCA+TGG | - | chr5.2:47436854-47436873 | MS.gene65645:CDS | 50.0% | |
GTTTCCGGTACTAACTCACC+TGG | + | chr5.2:47437278-47437297 | None:intergenic | 50.0% | |
TACGACCAGGCAAGTTCAGT+TGG | - | chr5.2:47438545-47438564 | MS.gene65645:CDS | 50.0% | |
TCCTTTCGATCGAGTTCCGA+AGG | - | chr5.2:47436706-47436725 | MS.gene65645:CDS | 50.0% | |
TGGCAGGAGAATTCCCAGTA+AGG | - | chr5.2:47436874-47436893 | MS.gene65645:CDS | 50.0% | |
TTTCGATCGAGTTCCGAAGG+TGG | - | chr5.2:47436709-47436728 | MS.gene65645:CDS | 50.0% | |
! | CATAGAGGAGCTAAAGGCAC+AGG | + | chr5.2:47436758-47436777 | None:intergenic | 50.0% |
! | CTGTGCCTTTAGCTCCTCTA+TGG | - | chr5.2:47436756-47436775 | MS.gene65645:CDS | 50.0% |
! | GCTCATGAGGTTTGCTCCAA+AGG | - | chr5.2:47438967-47438986 | MS.gene65645:CDS | 50.0% |
! | GTTGGTTGGGTGGTTTGTGA+GGG | + | chr5.2:47437507-47437526 | None:intergenic | 50.0% |
! | TTGGTTGGGTGGTTTGTGAG+GGG | + | chr5.2:47437506-47437525 | None:intergenic | 50.0% |
!! | GACTTGGGTTGACTGGTCAA+AGG | - | chr5.2:47438796-47438815 | MS.gene65645:CDS | 50.0% |
CAAGTTCAGTTGGACGCGGA+CGG | - | chr5.2:47438555-47438574 | MS.gene65645:CDS | 55.0% | |
CAGGCAAGTTCAGTTGGACG+CGG | - | chr5.2:47438551-47438570 | MS.gene65645:CDS | 55.0% | |
CTACGTCATGGCTTACGACC+AGG | - | chr5.2:47438532-47438551 | MS.gene65645:CDS | 55.0% | |
! | CAAGAAGCGCGTTTGCTAGC+AGG | + | chr5.2:47438415-47438434 | None:intergenic | 55.0% |
! | GGTTGGTTGGGTGGTTTGTG+AGG | + | chr5.2:47437508-47437527 | None:intergenic | 55.0% |
! | TACGGTCATGGTTGGTTGGG+TGG | + | chr5.2:47437517-47437536 | None:intergenic | 55.0% |
! | TGGGTTGACTGGTCAAAGGG+TGG | - | chr5.2:47438800-47438819 | MS.gene65645:CDS | 55.0% |
CGCGTCCAACTGAACTTGCC+TGG | + | chr5.2:47438553-47438572 | None:intergenic | 60.0% | |
! | GTTTGCTAGCAGGCGACGCT+CGG | + | chr5.2:47438405-47438424 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 47436356 | 47439003 | 47436356 | ID=MS.gene65645 |
chr5.2 | mRNA | 47436356 | 47439003 | 47436356 | ID=MS.gene65645.t1;Parent=MS.gene65645 |
chr5.2 | exon | 47438464 | 47439003 | 47438464 | ID=MS.gene65645.t1.exon1;Parent=MS.gene65645.t1 |
chr5.2 | CDS | 47438464 | 47439003 | 47438464 | ID=cds.MS.gene65645.t1;Parent=MS.gene65645.t1 |
chr5.2 | exon | 47436356 | 47436991 | 47436356 | ID=MS.gene65645.t1.exon2;Parent=MS.gene65645.t1 |
chr5.2 | CDS | 47436356 | 47436991 | 47436356 | ID=cds.MS.gene65645.t1;Parent=MS.gene65645.t1 |
Gene Sequence |
Protein sequence |