Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053866.t1 | XP_003614560.1 | 98 | 391 | 7 | 1 | 1 | 391 | 1 | 390 | 6.00E-223 | 783.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053866.t1 | Q65XS5 | 35.4 | 297 | 141 | 9 | 124 | 373 | 85 | 377 | 7.6e-41 | 169.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053866.t1 | G7JZH3 | 98.0 | 391 | 7 | 1 | 1 | 391 | 1 | 390 | 4.3e-223 | 783.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053866 | MS.gene44909 | 0.819425 | 1.17E-52 | -1.69E-46 |
| MS.gene053866 | MS.gene65645 | 0.84014 | 1.04E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002006 | MS.gene053866 | PPI |
| MS.gene072101 | MS.gene053866 | PPI |
| MS.gene053866 | MS.gene047241 | PPI |
| MS.gene00579 | MS.gene053866 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053866.t1 | MTR_5g055480 | 97.954 | 391 | 7 | 1 | 1 | 391 | 1 | 390 | 0.0 | 793 |
| MS.gene053866.t1 | MTR_1g110290 | 68.367 | 392 | 120 | 3 | 1 | 391 | 5 | 393 | 0.0 | 557 |
| MS.gene053866.t1 | MTR_6g083830 | 54.436 | 417 | 164 | 5 | 1 | 391 | 3 | 419 | 4.28e-162 | 461 |
| MS.gene053866.t1 | MTR_5g006920 | 50.355 | 423 | 176 | 4 | 1 | 391 | 1 | 421 | 4.92e-151 | 433 |
| MS.gene053866.t1 | MTR_5g006930 | 53.046 | 394 | 174 | 4 | 1 | 391 | 1 | 386 | 9.59e-147 | 421 |
| MS.gene053866.t1 | MTR_3g104840 | 48.780 | 410 | 172 | 8 | 1 | 391 | 3 | 393 | 4.72e-134 | 389 |
| MS.gene053866.t1 | MTR_1g016880 | 50.145 | 345 | 164 | 3 | 40 | 382 | 28 | 366 | 4.01e-127 | 371 |
| MS.gene053866.t1 | MTR_2g005350 | 53.595 | 306 | 140 | 1 | 86 | 389 | 131 | 436 | 9.83e-124 | 365 |
| MS.gene053866.t1 | MTR_8g015500 | 52.787 | 305 | 142 | 2 | 89 | 391 | 109 | 413 | 1.63e-117 | 348 |
| MS.gene053866.t1 | MTR_3g108740 | 41.390 | 331 | 156 | 8 | 82 | 382 | 49 | 371 | 2.56e-73 | 233 |
| MS.gene053866.t1 | MTR_1g009960 | 40.063 | 317 | 163 | 5 | 92 | 384 | 79 | 392 | 1.53e-70 | 227 |
| MS.gene053866.t1 | MTR_4g127550 | 39.339 | 333 | 164 | 7 | 82 | 384 | 63 | 387 | 9.80e-70 | 224 |
| MS.gene053866.t1 | MTR_2g037600 | 42.105 | 285 | 139 | 5 | 123 | 384 | 105 | 386 | 5.28e-65 | 212 |
| MS.gene053866.t1 | MTR_2g037620 | 39.446 | 289 | 140 | 5 | 123 | 384 | 97 | 377 | 5.31e-65 | 212 |
| MS.gene053866.t1 | MTR_1g009960 | 41.573 | 267 | 147 | 3 | 92 | 351 | 79 | 343 | 8.83e-64 | 209 |
| MS.gene053866.t1 | MTR_2g024120 | 36.909 | 317 | 155 | 9 | 108 | 382 | 46 | 359 | 3.54e-53 | 181 |
| MS.gene053866.t1 | MTR_8g094180 | 36.246 | 309 | 144 | 9 | 123 | 382 | 55 | 359 | 3.85e-53 | 181 |
| MS.gene053866.t1 | MTR_8g094180 | 37.218 | 266 | 132 | 6 | 123 | 356 | 55 | 317 | 7.22e-50 | 171 |
| MS.gene053866.t1 | MTR_3g106930 | 34.969 | 326 | 192 | 9 | 78 | 389 | 55 | 374 | 4.98e-44 | 157 |
| MS.gene053866.t1 | MTR_1g048320 | 38.889 | 288 | 145 | 10 | 123 | 389 | 64 | 341 | 2.08e-38 | 141 |
| MS.gene053866.t1 | MTR_2g087610 | 34.783 | 299 | 151 | 11 | 124 | 389 | 78 | 365 | 2.33e-37 | 139 |
| MS.gene053866.t1 | MTR_1g031060 | 37.931 | 290 | 147 | 9 | 123 | 389 | 80 | 359 | 2.96e-37 | 138 |
| MS.gene053866.t1 | MTR_1g031080 | 35.484 | 248 | 130 | 8 | 165 | 389 | 49 | 289 | 4.75e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053866.t1 | AT1G68390 | 64.309 | 311 | 107 | 3 | 85 | 391 | 98 | 408 | 7.98e-154 | 440 |
| MS.gene053866.t1 | AT1G10280 | 47.475 | 396 | 179 | 7 | 22 | 389 | 16 | 410 | 4.81e-128 | 375 |
| MS.gene053866.t1 | AT5G11730 | 54.167 | 312 | 141 | 2 | 80 | 389 | 73 | 384 | 4.28e-127 | 371 |
| MS.gene053866.t1 | AT1G73810 | 49.024 | 410 | 183 | 7 | 1 | 389 | 12 | 416 | 3.39e-126 | 370 |
| MS.gene053866.t1 | AT1G51770 | 52.647 | 340 | 158 | 3 | 54 | 391 | 54 | 392 | 4.34e-126 | 369 |
| MS.gene053866.t1 | AT1G68380 | 50.815 | 368 | 167 | 7 | 30 | 390 | 31 | 391 | 5.49e-124 | 363 |
| MS.gene053866.t1 | AT5G25970 | 51.572 | 318 | 149 | 3 | 77 | 389 | 68 | 385 | 3.49e-120 | 353 |
| MS.gene053866.t1 | AT5G25970 | 51.572 | 318 | 149 | 3 | 77 | 389 | 68 | 385 | 3.49e-120 | 353 |
| MS.gene053866.t1 | AT5G25970 | 51.572 | 318 | 149 | 3 | 77 | 389 | 68 | 385 | 3.49e-120 | 353 |
| MS.gene053866.t1 | AT3G21310 | 48.225 | 338 | 168 | 3 | 54 | 389 | 49 | 381 | 7.28e-118 | 348 |
| MS.gene053866.t1 | AT3G21310 | 48.225 | 338 | 168 | 3 | 54 | 389 | 49 | 381 | 7.28e-118 | 348 |
| MS.gene053866.t1 | AT1G10880 | 52.759 | 290 | 135 | 2 | 98 | 386 | 93 | 381 | 2.56e-114 | 339 |
| MS.gene053866.t1 | AT1G51770 | 47.941 | 340 | 147 | 4 | 54 | 391 | 54 | 365 | 6.42e-109 | 325 |
| MS.gene053866.t1 | AT5G16170 | 42.971 | 377 | 190 | 4 | 32 | 389 | 37 | 407 | 2.66e-108 | 324 |
| MS.gene053866.t1 | AT4G30060 | 39.329 | 328 | 160 | 7 | 84 | 382 | 70 | 387 | 2.42e-68 | 221 |
| MS.gene053866.t1 | AT4G30060 | 39.329 | 328 | 160 | 7 | 84 | 382 | 70 | 387 | 2.42e-68 | 221 |
| MS.gene053866.t1 | AT2G19160 | 38.066 | 331 | 168 | 7 | 84 | 386 | 67 | 388 | 9.46e-68 | 219 |
| MS.gene053866.t1 | AT2G19160 | 38.066 | 331 | 168 | 7 | 84 | 386 | 67 | 388 | 9.46e-68 | 219 |
| MS.gene053866.t1 | AT4G25870 | 39.521 | 334 | 172 | 7 | 78 | 386 | 54 | 382 | 9.70e-68 | 219 |
| MS.gene053866.t1 | AT4G31350 | 41.034 | 290 | 148 | 4 | 123 | 391 | 88 | 375 | 1.57e-67 | 218 |
| MS.gene053866.t1 | AT4G31350 | 41.034 | 290 | 148 | 4 | 123 | 391 | 88 | 375 | 1.57e-67 | 218 |
| MS.gene053866.t1 | AT4G31350 | 41.034 | 290 | 148 | 4 | 123 | 391 | 88 | 375 | 1.57e-67 | 218 |
| MS.gene053866.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 9.29e-64 | 209 |
| MS.gene053866.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 9.29e-64 | 209 |
| MS.gene053866.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 9.29e-64 | 209 |
| MS.gene053866.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 9.29e-64 | 209 |
| MS.gene053866.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 9.29e-64 | 209 |
| MS.gene053866.t1 | AT3G21310 | 48.558 | 208 | 101 | 2 | 53 | 259 | 48 | 250 | 5.54e-63 | 203 |
| MS.gene053866.t1 | AT4G31350 | 40.000 | 290 | 146 | 5 | 123 | 391 | 88 | 370 | 2.06e-62 | 205 |
| MS.gene053866.t1 | AT5G14550 | 36.364 | 308 | 148 | 8 | 120 | 383 | 61 | 364 | 3.89e-54 | 183 |
| MS.gene053866.t1 | AT5G14550 | 36.246 | 309 | 149 | 8 | 119 | 383 | 60 | 364 | 4.19e-54 | 183 |
| MS.gene053866.t1 | AT5G14550 | 37.884 | 293 | 142 | 9 | 120 | 381 | 61 | 344 | 1.48e-53 | 181 |
| MS.gene053866.t1 | AT1G11940 | 36.076 | 316 | 154 | 11 | 109 | 382 | 61 | 370 | 2.38e-51 | 176 |
| MS.gene053866.t1 | AT1G62305 | 36.246 | 309 | 149 | 10 | 116 | 382 | 62 | 364 | 2.75e-51 | 176 |
| MS.gene053866.t1 | AT5G25330 | 34.574 | 376 | 209 | 14 | 30 | 389 | 5 | 359 | 9.69e-49 | 169 |
| MS.gene053866.t1 | AT5G14550 | 38.062 | 289 | 142 | 10 | 120 | 383 | 61 | 337 | 9.89e-48 | 166 |
| MS.gene053866.t1 | AT3G52060 | 35.740 | 277 | 161 | 8 | 123 | 389 | 74 | 343 | 1.23e-47 | 166 |
| MS.gene053866.t1 | AT1G62305 | 42.466 | 219 | 99 | 6 | 116 | 312 | 62 | 275 | 1.75e-46 | 162 |
| MS.gene053866.t1 | AT1G11940 | 45.833 | 192 | 95 | 6 | 109 | 296 | 61 | 247 | 3.11e-45 | 157 |
| MS.gene053866.t1 | AT1G62305 | 33.010 | 309 | 135 | 10 | 116 | 382 | 62 | 340 | 3.45e-38 | 140 |
| MS.gene053866.t1 | AT5G22070 | 34.667 | 300 | 151 | 12 | 124 | 389 | 71 | 359 | 3.77e-37 | 138 |
| MS.gene053866.t1 | AT4G32290 | 35.417 | 288 | 160 | 7 | 124 | 389 | 93 | 376 | 1.71e-34 | 131 |
Find 72 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGCCTTTAGCTCCTCTA+TGG | 0.278504 | 5.3:-44089475 | MS.gene053866:CDS |
| TCTGGTCTCACATATTTAAC+TGG | 0.301424 | 5.3:+44087399 | None:intergenic |
| AAAGGATATTCATCTATCTT+AGG | 0.344852 | 5.3:+44089542 | None:intergenic |
| AATCAAACATGTAAGTATAA+TGG | 0.347050 | 5.3:-44087345 | MS.gene053866:CDS |
| AAATTCTTCAAAGGGCATAA+AGG | 0.387212 | 5.3:-44089449 | MS.gene053866:CDS |
| GTTTATAAGTGCATGACCTT+TGG | 0.392410 | 5.3:+44087246 | None:intergenic |
| AGGCTGGAATCAAATACTAT+TGG | 0.404126 | 5.3:+44089662 | None:intergenic |
| TAAGCGACGAAGAATTGTTA+TGG | 0.404573 | 5.3:-44089580 | MS.gene053866:CDS |
| ATGTTTGTTATTTGTTTGCT+AGG | 0.408942 | 5.3:-44087311 | MS.gene053866:CDS |
| AGGGTCTCAATGGTTTGAAA+TGG | 0.420923 | 5.3:-44087604 | MS.gene053866:CDS |
| AAACTCAGACAATGGAGAAA+AGG | 0.424464 | 5.3:-44087624 | MS.gene053866:CDS |
| CAAGAAGCGCGTTTGCTAGC+AGG | 0.432228 | 5.3:+44087817 | None:intergenic |
| AATTCTTCAAAGGGCATAAA+GGG | 0.434327 | 5.3:-44089448 | MS.gene053866:CDS |
| GAAGTTTGACTTGGGTTGAC+TGG | 0.435516 | 5.3:-44087440 | MS.gene053866:CDS |
| TATAATGCAGAAAGTAGAAT+GGG | 0.436466 | 5.3:-44087871 | MS.gene053866:intron |
| GTTTGCTAGCAGGCGACGCT+CGG | 0.437681 | 5.3:+44087827 | None:intergenic |
| AACTTAATGCTAACAAAAGT+TGG | 0.443687 | 5.3:+44087483 | None:intergenic |
| TGAAAACCGGGTAATATGTT+CGG | 0.445181 | 5.3:+44087550 | None:intergenic |
| AACTCAGACAATGGAGAAAA+GGG | 0.452092 | 5.3:-44087623 | MS.gene053866:CDS |
| CGCGTCCAACTGAACTTGCC+TGG | 0.457072 | 5.3:+44087679 | None:intergenic |
| GTGTGATACCACATGCTAGA+AGG | 0.467681 | 5.3:+44089780 | None:intergenic |
| GCTCATGAGGTTTGCTCCAA+AGG | 0.468695 | 5.3:-44087262 | MS.gene053866:CDS |
| ACTTGGGTTGACTGGTCAAA+GGG | 0.471540 | 5.3:-44087432 | MS.gene053866:CDS |
| GTATTTGATTCCAGCCTCAA+TGG | 0.471892 | 5.3:-44089656 | MS.gene053866:CDS |
| CTGATATGAGAACAAATCGT+TGG | 0.474721 | 5.3:+44087784 | None:intergenic |
| GTGGAGAGTCCTGTGTTTCA+TGG | 0.483852 | 5.3:-44089377 | MS.gene053866:CDS |
| TTGAAGAATTTCTCCCATAG+AGG | 0.489698 | 5.3:+44089461 | None:intergenic |
| TTCTCCCATAGAGGAGCTAA+AGG | 0.493380 | 5.3:+44089470 | None:intergenic |
| GACTTGGGTTGACTGGTCAA+AGG | 0.498955 | 5.3:-44087433 | MS.gene053866:CDS |
| ACTTCAGAACCATTGTAAGA+TGG | 0.502479 | 5.3:+44089398 | None:intergenic |
| CTAGCATGTGGTATCACACT+TGG | 0.505414 | 5.3:-44089776 | MS.gene053866:CDS |
| AATGGAGAAAAGGGTCTCAA+TGG | 0.505929 | 5.3:-44087614 | MS.gene053866:CDS |
| CTCACATATTTAACTGGGTG+TGG | 0.508350 | 5.3:+44087405 | None:intergenic |
| AGCCTCAATGGTAGTCATGA+AGG | 0.515851 | 5.3:-44089644 | MS.gene053866:CDS |
| TACAAATAGAAGTTTGACTT+GGG | 0.522087 | 5.3:-44087448 | MS.gene053866:CDS |
| AATACTATTGGTTGGCGTAA+CGG | 0.522626 | 5.3:+44089674 | None:intergenic |
| ATATAATGCAGAAAGTAGAA+TGG | 0.524034 | 5.3:-44087872 | MS.gene053866:intron |
| TATGGGAGAAATTCTTCAAA+GGG | 0.525258 | 5.3:-44089457 | MS.gene053866:CDS |
| CTACGTCATGGCTTACGACC+AGG | 0.528541 | 5.3:-44087697 | MS.gene053866:CDS |
| TACGACCAGGCAAGTTCAGT+TGG | 0.529529 | 5.3:-44087684 | MS.gene053866:CDS |
| TACCTTCTCCTTCTAGCATG+TGG | 0.532227 | 5.3:-44089788 | MS.gene053866:CDS |
| TTCATGACTACCATTGAGGC+TGG | 0.539090 | 5.3:+44089646 | None:intergenic |
| ATGAGCCTTGACAATGAAGT+AGG | 0.542080 | 5.3:+44087279 | None:intergenic |
| AGAGTCCTGTGTTTCATGGC+AGG | 0.545935 | 5.3:-44089373 | MS.gene053866:CDS |
| TGGCAGGAGAATTCCCAGTA+AGG | 0.548902 | 5.3:-44089357 | MS.gene053866:intron |
| TCTTGCCTACTTCATTGTCA+AGG | 0.554046 | 5.3:-44087284 | MS.gene053866:CDS |
| ATACAAATAGAAGTTTGACT+TGG | 0.556289 | 5.3:-44087449 | MS.gene053866:CDS |
| CTATGGGAGAAATTCTTCAA+AGG | 0.556837 | 5.3:-44089458 | MS.gene053866:CDS |
| TCCTTTCGATCGAGTTCCGA+AGG | 0.557813 | 5.3:-44089525 | MS.gene053866:CDS |
| ATCCTTCATGACTACCATTG+AGG | 0.559449 | 5.3:+44089642 | None:intergenic |
| ATCTTACAATGGTTCTGAAG+TGG | 0.559601 | 5.3:-44089396 | MS.gene053866:CDS |
| TGTGCCTTTAGCTCCTCTAT+GGG | 0.561241 | 5.3:-44089474 | MS.gene053866:CDS |
| TGGAATCAAATACTATTGGT+TGG | 0.565853 | 5.3:+44089666 | None:intergenic |
| CTACGATCAAACTCAGACAA+TGG | 0.571848 | 5.3:-44087632 | MS.gene053866:CDS |
| AAATCATGTACAACTTGAGA+TGG | 0.576276 | 5.3:+44089602 | None:intergenic |
| CTTCATTGTCAAGGCTCATG+AGG | 0.577302 | 5.3:-44087275 | MS.gene053866:CDS |
| CATAGAGGAGCTAAAGGCAC+AGG | 0.582656 | 5.3:+44089476 | None:intergenic |
| CTGGTCTCACATATTTAACT+GGG | 0.587265 | 5.3:+44087400 | None:intergenic |
| ATTCTCCTGCCATGAAACAC+AGG | 0.591758 | 5.3:+44089368 | None:intergenic |
| ACCTTCGGAACTCGATCGAA+AGG | 0.595763 | 5.3:+44089524 | None:intergenic |
| CAAGTTCAGTTGGACGCGGA+CGG | 0.618278 | 5.3:-44087674 | MS.gene053866:CDS |
| CTAGAAGGAGAAGGTAAGTG+AGG | 0.623171 | 5.3:+44089795 | None:intergenic |
| ATCAGACCGAACATATTACC+CGG | 0.623786 | 5.3:-44087556 | MS.gene053866:CDS |
| TTTCGATCGAGTTCCGAAGG+TGG | 0.623922 | 5.3:-44089522 | MS.gene053866:CDS |
| CACTCGAATCCATCTTACAA+TGG | 0.632327 | 5.3:-44089407 | MS.gene053866:CDS |
| ACTGTTGAGAAGTTGAATAG+TGG | 0.634685 | 5.3:+44087750 | None:intergenic |
| CAGGCAAGTTCAGTTGGACG+CGG | 0.637111 | 5.3:-44087678 | MS.gene053866:CDS |
| TGGGTTGACTGGTCAAAGGG+TGG | 0.638199 | 5.3:-44087429 | MS.gene053866:CDS |
| CATTGTCTGAGTTTGATCGT+AGG | 0.644597 | 5.3:+44087633 | None:intergenic |
| TACCACATGCTAGAAGGAGA+AGG | 0.656558 | 5.3:+44089786 | None:intergenic |
| ATAATGCAGAAAGTAGAATG+GGG | 0.668247 | 5.3:-44087870 | MS.gene053866:intron |
| AGTTAAATATGTGAGACCAG+AGG | 0.732458 | 5.3:-44087397 | MS.gene053866:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAATTGAAAGAATAA+AGG | - | chr5.3:44088638-44088657 | MS.gene053866:intron | 10.0% |
| !! | AAAAAATATTGAATGTAACT+AGG | - | chr5.3:44088150-44088169 | MS.gene053866:intron | 15.0% |
| !!! | AGATATAAAAAACTTTTTTG+AGG | - | chr5.3:44088304-44088323 | MS.gene053866:intron | 15.0% |
| !!! | ATATAAAAAACTTTTTTGAG+GGG | - | chr5.3:44088306-44088325 | MS.gene053866:intron | 15.0% |
| !!! | GAATTTTTTTTATCTTGATA+TGG | - | chr5.3:44087794-44087813 | MS.gene053866:CDS | 15.0% |
| !!! | GATATAAAAAACTTTTTTGA+GGG | - | chr5.3:44088305-44088324 | MS.gene053866:intron | 15.0% |
| !!! | GTTTTTTATATCTTTTCTTT+TGG | + | chr5.3:44088297-44088316 | None:intergenic | 15.0% |
| !!! | TGTTTCAAATCTTAATTTTT+AGG | - | chr5.3:44089160-44089179 | MS.gene053866:intron | 15.0% |
| !!! | TTTAATTTTTTTACACATTG+TGG | + | chr5.3:44088992-44089011 | None:intergenic | 15.0% |
| !! | AACACTAAAGTTTCATTAAA+AGG | + | chr5.3:44088924-44088943 | None:intergenic | 20.0% |
| !! | AAGTATACAATAAACCATAA+AGG | + | chr5.3:44089141-44089160 | None:intergenic | 20.0% |
| !! | AATCAAACATGTAAGTATAA+TGG | - | chr5.3:44089778-44089797 | MS.gene053866:CDS | 20.0% |
| !! | ATCAAAGAACAAATAAAGTA+AGG | - | chr5.3:44087876-44087895 | MS.gene053866:intron | 20.0% |
| !! | GAGAAAATTAATTTCCTTTA+TGG | - | chr5.3:44089124-44089143 | MS.gene053866:intron | 20.0% |
| !! | TCAAAGAACAAATAAAGTAA+GGG | - | chr5.3:44087877-44087896 | MS.gene053866:intron | 20.0% |
| !! | TTATGAATGAAAATTGTCAT+TGG | - | chr5.3:44087822-44087841 | MS.gene053866:CDS | 20.0% |
| !!! | AAACCATGTATAAATCTTTT+AGG | + | chr5.3:44088688-44088707 | None:intergenic | 20.0% |
| !!! | AATTGTTTGATTTGAAAACA+TGG | + | chr5.3:44087937-44087956 | None:intergenic | 20.0% |
| !!! | GTATACACATGTTTTAAATA+TGG | - | chr5.3:44087989-44088008 | MS.gene053866:intron | 20.0% |
| !!! | TATAAAAAACTTTTTTGAGG+GGG | - | chr5.3:44088307-44088326 | MS.gene053866:intron | 20.0% |
| !!! | TGCTAATAGTATTTTGAATA+TGG | + | chr5.3:44088573-44088592 | None:intergenic | 20.0% |
| ! | AAAAAATTCACTAACCTTAC+TGG | + | chr5.3:44087783-44087802 | None:intergenic | 25.0% |
| ! | AAAAATTCACTAACCTTACT+GGG | + | chr5.3:44087782-44087801 | None:intergenic | 25.0% |
| ! | AAAGGATATTCATCTATCTT+AGG | + | chr5.3:44087584-44087603 | None:intergenic | 25.0% |
| ! | AAATTGAATCAAGAGGAAAA+GGG | - | chr5.3:44088066-44088085 | MS.gene053866:intron | 25.0% |
| ! | AACTTAATGCTAACAAAAGT+TGG | + | chr5.3:44089643-44089662 | None:intergenic | 25.0% |
| ! | ACTAAAGTTTCATTAAAAGG+TGG | + | chr5.3:44088921-44088940 | None:intergenic | 25.0% |
| ! | ATACAAATAGAAGTTTGACT+TGG | - | chr5.3:44089674-44089693 | MS.gene053866:CDS | 25.0% |
| ! | ATAGATTATAGTCTTCAACT+AGG | - | chr5.3:44088755-44088774 | MS.gene053866:intron | 25.0% |
| ! | ATATAATGCAGAAAGTAGAA+TGG | - | chr5.3:44089251-44089270 | MS.gene053866:intron | 25.0% |
| ! | ATTGGAAGCTTAATTCAAAA+TGG | + | chr5.3:44089039-44089058 | None:intergenic | 25.0% |
| ! | TAAATTGAATCAAGAGGAAA+AGG | - | chr5.3:44088065-44088084 | MS.gene053866:intron | 25.0% |
| ! | TATAATGCAGAAAGTAGAAT+GGG | - | chr5.3:44089252-44089271 | MS.gene053866:intron | 25.0% |
| ! | TCAAATCAAACAATTCTATG+TGG | - | chr5.3:44087942-44087961 | MS.gene053866:intron | 25.0% |
| ! | TTTCTGTATATAGCATTTCA+TGG | - | chr5.3:44088482-44088501 | MS.gene053866:intron | 25.0% |
| !! | ATTTTCTCATGATCACTAAT+TGG | + | chr5.3:44089112-44089131 | None:intergenic | 25.0% |
| !! | CATTGCATTGATAACTAATT+AGG | + | chr5.3:44088881-44088900 | None:intergenic | 25.0% |
| !! | CTTTTGTTAGCATTAAGTTT+TGG | - | chr5.3:44089644-44089663 | MS.gene053866:CDS | 25.0% |
| !! | GTTTTCAGAAAATATTGCAA+TGG | - | chr5.3:44089589-44089608 | MS.gene053866:CDS | 25.0% |
| !! | TACAAATAGAAGTTTGACTT+GGG | - | chr5.3:44089675-44089694 | MS.gene053866:CDS | 25.0% |
| !! | TTAATACTGTGCCTTAATTT+TGG | + | chr5.3:44088794-44088813 | None:intergenic | 25.0% |
| !! | TTTTCTCATGATCACTAATT+GGG | + | chr5.3:44089111-44089130 | None:intergenic | 25.0% |
| !!! | ATGTTTGTTATTTGTTTGCT+AGG | - | chr5.3:44089812-44089831 | MS.gene053866:CDS | 25.0% |
| !!! | GTATTTTGAATATGGAATAC+TGG | + | chr5.3:44088565-44088584 | None:intergenic | 25.0% |
| !!! | TACATTTTGAAACAAACTGA+TGG | + | chr5.3:44089213-44089232 | None:intergenic | 25.0% |
| !!! | TTGCAATATTTTCTGAAAAC+CGG | + | chr5.3:44089589-44089608 | None:intergenic | 25.0% |
| AAAAATTCACAAGTAACCTC+TGG | + | chr5.3:44089745-44089764 | None:intergenic | 30.0% | |
| AAATCATGTACAACTTGAGA+TGG | + | chr5.3:44087524-44087543 | None:intergenic | 30.0% | |
| AAGTTTCATTAAAAGGTGGT+AGG | + | chr5.3:44088917-44088936 | None:intergenic | 30.0% | |
| AATTGAATCAAGAGGAAAAG+GGG | - | chr5.3:44088067-44088086 | MS.gene053866:intron | 30.0% | |
| ACACTTTCAATATGAAGTGT+CGG | - | chr5.3:44088189-44088208 | MS.gene053866:intron | 30.0% | |
| ACTCTTTAGACTCTACATAT+TGG | + | chr5.3:44088960-44088979 | None:intergenic | 30.0% | |
| ATAATGCAGAAAGTAGAATG+GGG | - | chr5.3:44089253-44089272 | MS.gene053866:intron | 30.0% | |
| ATGAAACTTTAGTGTTGTGT+AGG | - | chr5.3:44088928-44088947 | MS.gene053866:intron | 30.0% | |
| ATTATAGTCTTCAACTAGGT+AGG | - | chr5.3:44088759-44088778 | MS.gene053866:intron | 30.0% | |
| GTGCCTAAAAGATTTATACA+TGG | - | chr5.3:44088682-44088701 | MS.gene053866:intron | 30.0% | |
| GTTGAAGACTATAATCTATG+AGG | + | chr5.3:44088754-44088773 | None:intergenic | 30.0% | |
| TATGGGAGAAATTCTTCAAA+GGG | - | chr5.3:44087666-44087685 | MS.gene053866:CDS | 30.0% | |
| TCCAAGTAAATTGAATCAAG+AGG | - | chr5.3:44088059-44088078 | MS.gene053866:intron | 30.0% | |
| TCCTCTTGATTCAATTTACT+TGG | + | chr5.3:44088063-44088082 | None:intergenic | 30.0% | |
| TCTGCATTATATCAGATGAA+GGG | + | chr5.3:44089243-44089262 | None:intergenic | 30.0% | |
| TGAAACTTTAGTGTTGTGTA+GGG | - | chr5.3:44088929-44088948 | MS.gene053866:intron | 30.0% | |
| TGGAATCAAATACTATTGGT+TGG | + | chr5.3:44087460-44087479 | None:intergenic | 30.0% | |
| TGGCAAGATTAAAAAAACCT+TGG | + | chr5.3:44088277-44088296 | None:intergenic | 30.0% | |
| TTCTGCATTATATCAGATGA+AGG | + | chr5.3:44089244-44089263 | None:intergenic | 30.0% | |
| ! | AAATTCTTCAAAGGGCATAA+AGG | - | chr5.3:44087674-44087693 | MS.gene053866:CDS | 30.0% |
| ! | AATTCTTCAAAGGGCATAAA+GGG | - | chr5.3:44087675-44087694 | MS.gene053866:CDS | 30.0% |
| ! | AGAGGTTACTTGTGAATTTT+TGG | - | chr5.3:44089744-44089763 | MS.gene053866:CDS | 30.0% |
| !! | CTTCATATTGAAAGTGTTTC+CGG | + | chr5.3:44088186-44088205 | None:intergenic | 30.0% |
| !! | GTGAATTTTTGGAGAATTTG+AGG | - | chr5.3:44089755-44089774 | MS.gene053866:CDS | 30.0% |
| !! | TGCAATATTTTCTGAAAACC+GGG | + | chr5.3:44089588-44089607 | None:intergenic | 30.0% |
| AAAACCTTGGCACTTAGTTA+AGG | + | chr5.3:44088264-44088283 | None:intergenic | 35.0% | |
| AAACTCAGACAATGGAGAAA+AGG | - | chr5.3:44089499-44089518 | MS.gene053866:CDS | 35.0% | |
| AAAGGTGGTAGGAATTTAGA+TGG | + | chr5.3:44088906-44088925 | None:intergenic | 35.0% | |
| AACTATCCTCTTCCATACTA+CGG | + | chr5.3:44088429-44088448 | None:intergenic | 35.0% | |
| AACTCAGACAATGGAGAAAA+GGG | - | chr5.3:44089500-44089519 | MS.gene053866:CDS | 35.0% | |
| AATTAAATGAAGCAGAGCAG+AGG | - | chr5.3:44088093-44088112 | MS.gene053866:intron | 35.0% | |
| ACTGTTGAGAAGTTGAATAG+TGG | + | chr5.3:44089376-44089395 | None:intergenic | 35.0% | |
| ACTTCAGAACCATTGTAAGA+TGG | + | chr5.3:44087728-44087747 | None:intergenic | 35.0% | |
| AGGCTGGAATCAAATACTAT+TGG | + | chr5.3:44087464-44087483 | None:intergenic | 35.0% | |
| AGTTAAATATGTGAGACCAG+AGG | - | chr5.3:44089726-44089745 | MS.gene053866:CDS | 35.0% | |
| ATAATCTATGAGGTGGCAAA+TGG | + | chr5.3:44088744-44088763 | None:intergenic | 35.0% | |
| ATATGTAGCTGTTGGAAGTT+TGG | - | chr5.3:44088820-44088839 | MS.gene053866:intron | 35.0% | |
| ATTAAATGAAGCAGAGCAGA+GGG | - | chr5.3:44088094-44088113 | MS.gene053866:intron | 35.0% | |
| ATTGAATCAAGAGGAAAAGG+GGG | - | chr5.3:44088068-44088087 | MS.gene053866:intron | 35.0% | |
| CTATGGGAGAAATTCTTCAA+AGG | - | chr5.3:44087665-44087684 | MS.gene053866:CDS | 35.0% | |
| CTGATATGAGAACAAATCGT+TGG | + | chr5.3:44089342-44089361 | None:intergenic | 35.0% | |
| CTGGTCTCACATATTTAACT+GGG | + | chr5.3:44089726-44089745 | None:intergenic | 35.0% | |
| GAAGACTATAATCTATGAGG+TGG | + | chr5.3:44088751-44088770 | None:intergenic | 35.0% | |
| GCACTTAGTTAAGGTAGTTA+TGG | + | chr5.3:44088255-44088274 | None:intergenic | 35.0% | |
| TAAGCGACGAAGAATTGTTA+TGG | - | chr5.3:44087543-44087562 | MS.gene053866:CDS | 35.0% | |
| TAAGGTAGTTATGGTCTCAA+TGG | + | chr5.3:44088246-44088265 | None:intergenic | 35.0% | |
| TCGCTCATGTGTTATACTAT+TGG | - | chr5.3:44088370-44088389 | MS.gene053866:intron | 35.0% | |
| TCTGGTCTCACATATTTAAC+TGG | + | chr5.3:44089727-44089746 | None:intergenic | 35.0% | |
| TGAAAACCGGGTAATATGTT+CGG | + | chr5.3:44089576-44089595 | None:intergenic | 35.0% | |
| TGGCAAATGGCAATTTATCT+GGG | + | chr5.3:44088731-44088750 | None:intergenic | 35.0% | |
| TTAAGGCACAGTATTAACTG+AGG | - | chr5.3:44088797-44088816 | MS.gene053866:intron | 35.0% | |
| TTGAAGAATTTCTCCCATAG+AGG | + | chr5.3:44087665-44087684 | None:intergenic | 35.0% | |
| ! | AATACTATTGGTTGGCGTAA+CGG | + | chr5.3:44087452-44087471 | None:intergenic | 35.0% |
| ! | ACTAACATGTGTCCTCTTTT+TGG | + | chr5.3:44088513-44088532 | None:intergenic | 35.0% |
| !! | ATCTTACAATGGTTCTGAAG+TGG | - | chr5.3:44087727-44087746 | MS.gene053866:CDS | 35.0% |
| !! | GTGACATGTACGTTTTAAGT+TGG | - | chr5.3:44088213-44088232 | MS.gene053866:intron | 35.0% |
| AACTGAGGATATGTAGCTGT+TGG | - | chr5.3:44088812-44088831 | MS.gene053866:intron | 40.0% | |
| AACTTTAGTGTTGTGTAGGG+AGG | - | chr5.3:44088932-44088951 | MS.gene053866:intron | 40.0% | |
| AAGAACAAAAACGCCACCTT+CGG | + | chr5.3:44087617-44087636 | None:intergenic | 40.0% | |
| AATGGAGAAAAGGGTCTCAA+TGG | - | chr5.3:44089509-44089528 | MS.gene053866:CDS | 40.0% | |
| ACCAGAGATAGAAAATGCAG+GGG | - | chr5.3:44089066-44089085 | MS.gene053866:intron | 40.0% | |
| ACTACCTTAACTAAGTGCCA+AGG | - | chr5.3:44088257-44088276 | MS.gene053866:intron | 40.0% | |
| ACTTTAGTGTTGTGTAGGGA+GGG | - | chr5.3:44088933-44088952 | MS.gene053866:intron | 40.0% | |
| AGACCAGAGATAGAAAATGC+AGG | - | chr5.3:44089064-44089083 | MS.gene053866:intron | 40.0% | |
| AGGGTCTCAATGGTTTGAAA+TGG | - | chr5.3:44089519-44089538 | MS.gene053866:CDS | 40.0% | |
| ATCAGACCGAACATATTACC+CGG | - | chr5.3:44089567-44089586 | MS.gene053866:CDS | 40.0% | |
| ATCCTTCATGACTACCATTG+AGG | + | chr5.3:44087484-44087503 | None:intergenic | 40.0% | |
| ATGAGCCTTGACAATGAAGT+AGG | + | chr5.3:44089847-44089866 | None:intergenic | 40.0% | |
| CACTCGAATCCATCTTACAA+TGG | - | chr5.3:44087716-44087735 | MS.gene053866:CDS | 40.0% | |
| CATTGTCTGAGTTTGATCGT+AGG | + | chr5.3:44089493-44089512 | None:intergenic | 40.0% | |
| CCACTAAAGTAGCTTACAAC+TGG | - | chr5.3:44088335-44088354 | MS.gene053866:intron | 40.0% | |
| CTACGATCAAACTCAGACAA+TGG | - | chr5.3:44089491-44089510 | MS.gene053866:CDS | 40.0% | |
| CTATCTCTGGTCTGTTTCAT+TGG | + | chr5.3:44089057-44089076 | None:intergenic | 40.0% | |
| CTCAACAAAAAGCTACGTCA+TGG | - | chr5.3:44089414-44089433 | MS.gene053866:CDS | 40.0% | |
| CTCACATATTTAACTGGGTG+TGG | + | chr5.3:44089721-44089740 | None:intergenic | 40.0% | |
| GACCAGAGATAGAAAATGCA+GGG | - | chr5.3:44089065-44089084 | MS.gene053866:intron | 40.0% | |
| GGTCATGAGGACCAAAATTA+AGG | - | chr5.3:44088780-44088799 | MS.gene053866:intron | 40.0% | |
| GTAACTAGGTGAGTTAGTAC+CGG | - | chr5.3:44088164-44088183 | MS.gene053866:intron | 40.0% | |
| GTATTTGATTCCAGCCTCAA+TGG | - | chr5.3:44087467-44087486 | MS.gene053866:CDS | 40.0% | |
| GTGGCAAATGGCAATTTATC+TGG | + | chr5.3:44088732-44088751 | None:intergenic | 40.0% | |
| GTTATGGTCTCAATGGATCA+TGG | + | chr5.3:44088239-44088258 | None:intergenic | 40.0% | |
| TCTTGCCTACTTCATTGTCA+AGG | - | chr5.3:44089839-44089858 | MS.gene053866:CDS | 40.0% | |
| TTCATGGTTCCTCCAAAAAG+AGG | - | chr5.3:44088498-44088517 | MS.gene053866:intron | 40.0% | |
| ! | AACATGTGTCCTCTTTTTGG+AGG | + | chr5.3:44088510-44088529 | None:intergenic | 40.0% |
| ! | CCAGTTGTAAGCTACTTTAG+TGG | + | chr5.3:44088338-44088357 | None:intergenic | 40.0% |
| ! | GCGTTTTTGTTCTTGGTTAG+AGG | - | chr5.3:44087623-44087642 | MS.gene053866:CDS | 40.0% |
| !!! | AAAACTTTTTTGAGGGGGAG+AGG | - | chr5.3:44088312-44088331 | MS.gene053866:intron | 40.0% |
| AACCAACCATGACCGTAGTA+TGG | - | chr5.3:44088414-44088433 | MS.gene053866:intron | 45.0% | |
| AGCCTCAATGGTAGTCATGA+AGG | - | chr5.3:44087479-44087498 | MS.gene053866:CDS | 45.0% | |
| ATACTACGGTCATGGTTGGT+TGG | + | chr5.3:44088415-44088434 | None:intergenic | 45.0% | |
| ATTCTCCTGCCATGAAACAC+AGG | + | chr5.3:44087758-44087777 | None:intergenic | 45.0% | |
| CTAGAAGGAGAAGGTAAGTG+AGG | + | chr5.3:44087331-44087350 | None:intergenic | 45.0% | |
| CTAGCATGTGGTATCACACT+TGG | - | chr5.3:44087347-44087366 | MS.gene053866:CDS | 45.0% | |
| CTTCAACTAGGTAGGTCATG+AGG | - | chr5.3:44088767-44088786 | MS.gene053866:intron | 45.0% | |
| CTTCATTGTCAAGGCTCATG+AGG | - | chr5.3:44089848-44089867 | MS.gene053866:CDS | 45.0% | |
| GTGTGATACCACATGCTAGA+AGG | + | chr5.3:44087346-44087365 | None:intergenic | 45.0% | |
| TACCACATGCTAGAAGGAGA+AGG | + | chr5.3:44087340-44087359 | None:intergenic | 45.0% | |
| TACCTTCTCCTTCTAGCATG+TGG | - | chr5.3:44087335-44087354 | MS.gene053866:CDS | 45.0% | |
| TTCATGACTACCATTGAGGC+TGG | + | chr5.3:44087480-44087499 | None:intergenic | 45.0% | |
| TTCCATACTACGGTCATGGT+TGG | + | chr5.3:44088419-44088438 | None:intergenic | 45.0% | |
| TTCTCCCATAGAGGAGCTAA+AGG | + | chr5.3:44087656-44087675 | None:intergenic | 45.0% | |
| ! | GAAGGTGGCGTTTTTGTTCT+TGG | - | chr5.3:44087616-44087635 | MS.gene053866:CDS | 45.0% |
| ! | TACTACGGTCATGGTTGGTT+GGG | + | chr5.3:44088414-44088433 | None:intergenic | 45.0% |
| ! | TCCCCTGCATTTTCTATCTC+TGG | + | chr5.3:44089070-44089089 | None:intergenic | 45.0% |
| ! | TGTGCCTTTAGCTCCTCTAT+GGG | - | chr5.3:44087649-44087668 | MS.gene053866:CDS | 45.0% |
| !! | ACTTGGGTTGACTGGTCAAA+GGG | - | chr5.3:44089691-44089710 | MS.gene053866:CDS | 45.0% |
| !! | GAAGTTTGACTTGGGTTGAC+TGG | - | chr5.3:44089683-44089702 | MS.gene053866:CDS | 45.0% |
| !!! | CAATATTTTTTAATTATTAT+AGG | + | chr5.3:44088141-44088160 | None:intergenic | 5.0% |
| ACCTTCGGAACTCGATCGAA+AGG | + | chr5.3:44087602-44087621 | None:intergenic | 50.0% | |
| AGAGTCCTGTGTTTCATGGC+AGG | - | chr5.3:44087750-44087769 | MS.gene053866:CDS | 50.0% | |
| CCATGACCGTAGTATGGAAG+AGG | - | chr5.3:44088420-44088439 | MS.gene053866:intron | 50.0% | |
| CCTCTTCCATACTACGGTCA+TGG | + | chr5.3:44088423-44088442 | None:intergenic | 50.0% | |
| GTGGAGAGTCCTGTGTTTCA+TGG | - | chr5.3:44087746-44087765 | MS.gene053866:CDS | 50.0% | |
| TACGACCAGGCAAGTTCAGT+TGG | - | chr5.3:44089439-44089458 | MS.gene053866:CDS | 50.0% | |
| TCCTTTCGATCGAGTTCCGA+AGG | - | chr5.3:44087598-44087617 | MS.gene053866:CDS | 50.0% | |
| TGGCAGGAGAATTCCCAGTA+AGG | - | chr5.3:44087766-44087785 | MS.gene053866:CDS | 50.0% | |
| TTTCGATCGAGTTCCGAAGG+TGG | - | chr5.3:44087601-44087620 | MS.gene053866:CDS | 50.0% | |
| ! | CATAGAGGAGCTAAAGGCAC+AGG | + | chr5.3:44087650-44087669 | None:intergenic | 50.0% |
| ! | CTGTGCCTTTAGCTCCTCTA+TGG | - | chr5.3:44087648-44087667 | MS.gene053866:CDS | 50.0% |
| ! | GCTCATGAGGTTTGCTCCAA+AGG | - | chr5.3:44089861-44089880 | MS.gene053866:CDS | 50.0% |
| ! | GTTGGTTGGGTGGTTTGTGA+GGG | + | chr5.3:44088401-44088420 | None:intergenic | 50.0% |
| ! | TTGGTTGGGTGGTTTGTGAG+GGG | + | chr5.3:44088400-44088419 | None:intergenic | 50.0% |
| !! | GACTTGGGTTGACTGGTCAA+AGG | - | chr5.3:44089690-44089709 | MS.gene053866:CDS | 50.0% |
| CAAGTTCAGTTGGACGCGGA+CGG | - | chr5.3:44089449-44089468 | MS.gene053866:CDS | 55.0% | |
| CAGGCAAGTTCAGTTGGACG+CGG | - | chr5.3:44089445-44089464 | MS.gene053866:CDS | 55.0% | |
| CTACGTCATGGCTTACGACC+AGG | - | chr5.3:44089426-44089445 | MS.gene053866:CDS | 55.0% | |
| ! | CAAGAAGCGCGTTTGCTAGC+AGG | + | chr5.3:44089309-44089328 | None:intergenic | 55.0% |
| ! | GGTTGGTTGGGTGGTTTGTG+AGG | + | chr5.3:44088402-44088421 | None:intergenic | 55.0% |
| ! | TACGGTCATGGTTGGTTGGG+TGG | + | chr5.3:44088411-44088430 | None:intergenic | 55.0% |
| ! | TGGGTTGACTGGTCAAAGGG+TGG | - | chr5.3:44089694-44089713 | MS.gene053866:CDS | 55.0% |
| CGCGTCCAACTGAACTTGCC+TGG | + | chr5.3:44089447-44089466 | None:intergenic | 60.0% | |
| ! | GTTTGCTAGCAGGCGACGCT+CGG | + | chr5.3:44089299-44089318 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 44087248 | 44089897 | 44087248 | ID=MS.gene053866 |
| chr5.3 | mRNA | 44087248 | 44089897 | 44087248 | ID=MS.gene053866.t1;Parent=MS.gene053866 |
| chr5.3 | exon | 44089358 | 44089897 | 44089358 | ID=MS.gene053866.t1.exon1;Parent=MS.gene053866.t1 |
| chr5.3 | CDS | 44089358 | 44089897 | 44089358 | ID=cds.MS.gene053866.t1;Parent=MS.gene053866.t1 |
| chr5.3 | exon | 44087248 | 44087883 | 44087248 | ID=MS.gene053866.t1.exon2;Parent=MS.gene053866.t1 |
| chr5.3 | CDS | 44087248 | 44087883 | 44087248 | ID=cds.MS.gene053866.t1;Parent=MS.gene053866.t1 |
| Gene Sequence |
| Protein sequence |
