Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65745.t1 | RHN65706.1 | 97.6 | 167 | 4 | 0 | 1 | 167 | 1 | 167 | 1.40E-83 | 318.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65745.t1 | O80366 | 65.2 | 161 | 54 | 2 | 2 | 160 | 7 | 167 | 1.5e-51 | 203.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65745.t1 | A0A396IJ66 | 97.6 | 167 | 4 | 0 | 1 | 167 | 1 | 167 | 9.9e-84 | 318.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene65745.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049178 | MS.gene65745 | 0.818444 | 1.95E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene65745 | 0.804106 | 2.53E-49 | -1.69E-46 |
| MS.gene049647 | MS.gene65745 | 0.808004 | 3.83E-50 | -1.69E-46 |
| MS.gene051490 | MS.gene65745 | 0.804304 | 2.30E-49 | -1.69E-46 |
| MS.gene051790 | MS.gene65745 | 0.802065 | 6.70E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene65745 | 0.809386 | 1.94E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene65745 | 0.804689 | 1.91E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene65745 | 0.807585 | 4.70E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene65745 | 0.827695 | 1.36E-54 | -1.69E-46 |
| MS.gene060998 | MS.gene65745 | 0.803431 | 3.50E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65745.t1 | MTR_3g015490 | 92.814 | 167 | 9 | 1 | 1 | 167 | 1 | 164 | 5.26e-110 | 310 |
| MS.gene65745.t1 | MTR_8g038620 | 74.545 | 165 | 41 | 1 | 3 | 167 | 8 | 171 | 1.57e-84 | 246 |
| MS.gene65745.t1 | MTR_7g490310 | 67.901 | 162 | 50 | 1 | 2 | 163 | 7 | 166 | 1.20e-77 | 231 |
| MS.gene65745.t1 | MTR_6g007460 | 55.224 | 201 | 28 | 3 | 3 | 150 | 10 | 201 | 1.97e-66 | 201 |
| MS.gene65745.t1 | MTR_3g088630 | 58.491 | 159 | 52 | 3 | 3 | 150 | 21 | 176 | 1.47e-58 | 182 |
| MS.gene65745.t1 | MTR_5g036480 | 56.643 | 143 | 57 | 1 | 3 | 145 | 15 | 152 | 5.21e-53 | 168 |
| MS.gene65745.t1 | MTR_3g078613 | 50.307 | 163 | 72 | 2 | 1 | 163 | 20 | 173 | 3.76e-51 | 162 |
| MS.gene65745.t1 | MTR_1g049100 | 55.696 | 158 | 58 | 4 | 3 | 159 | 7 | 153 | 4.98e-51 | 162 |
| MS.gene65745.t1 | MTR_4g106590 | 52.439 | 164 | 68 | 3 | 2 | 164 | 24 | 178 | 2.70e-50 | 160 |
| MS.gene65745.t1 | MTR_3g093860 | 55.634 | 142 | 46 | 3 | 5 | 141 | 19 | 148 | 4.12e-50 | 158 |
| MS.gene65745.t1 | MTR_3g078613 | 50.000 | 164 | 72 | 3 | 1 | 163 | 20 | 174 | 2.74e-49 | 158 |
| MS.gene65745.t1 | MTR_4g051330 | 98.701 | 77 | 1 | 0 | 91 | 167 | 77 | 153 | 1.25e-48 | 154 |
| MS.gene65745.t1 | MTR_4g061360 | 29.927 | 137 | 78 | 2 | 6 | 142 | 91 | 209 | 1.75e-14 | 70.5 |
| MS.gene65745.t1 | MTR_8g024260 | 27.143 | 140 | 84 | 1 | 6 | 145 | 38 | 159 | 1.78e-14 | 70.5 |
| MS.gene65745.t1 | MTR_1g067110 | 27.737 | 137 | 81 | 1 | 6 | 142 | 87 | 205 | 5.47e-13 | 66.2 |
| MS.gene65745.t1 | MTR_1g067110 | 27.737 | 137 | 81 | 1 | 6 | 142 | 87 | 205 | 7.39e-13 | 65.9 |
| MS.gene65745.t1 | MTR_3g092780 | 27.083 | 144 | 87 | 2 | 4 | 147 | 56 | 181 | 1.21e-12 | 65.1 |
| MS.gene65745.t1 | MTR_3g092780 | 27.083 | 144 | 87 | 2 | 4 | 147 | 56 | 181 | 1.21e-12 | 65.1 |
| MS.gene65745.t1 | MTR_3g092780 | 27.333 | 150 | 91 | 2 | 4 | 153 | 56 | 187 | 1.79e-12 | 64.7 |
| MS.gene65745.t1 | MTR_3g092780 | 27.333 | 150 | 91 | 2 | 4 | 153 | 56 | 187 | 1.81e-12 | 64.7 |
| MS.gene65745.t1 | MTR_7g118260 | 24.074 | 162 | 103 | 2 | 1 | 162 | 13 | 154 | 3.91e-12 | 63.5 |
| MS.gene65745.t1 | MTR_1g013180 | 28.671 | 143 | 81 | 3 | 6 | 148 | 162 | 283 | 2.75e-11 | 61.2 |
| MS.gene65745.t1 | MTR_1g032570 | 28.125 | 160 | 93 | 4 | 2 | 161 | 13 | 150 | 3.13e-11 | 61.2 |
| MS.gene65745.t1 | MTR_7g118260 | 25.352 | 142 | 86 | 2 | 1 | 142 | 13 | 134 | 3.96e-11 | 60.8 |
| MS.gene65745.t1 | MTR_8g079940 | 26.207 | 145 | 86 | 3 | 2 | 146 | 27 | 150 | 9.12e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65745.t1 | AT3G57040 | 69.799 | 149 | 42 | 2 | 2 | 148 | 7 | 154 | 2.91e-71 | 215 |
| MS.gene65745.t1 | AT3G57040 | 69.799 | 149 | 42 | 2 | 2 | 148 | 7 | 154 | 2.91e-71 | 215 |
| MS.gene65745.t1 | AT2G41310 | 64.430 | 149 | 52 | 1 | 2 | 150 | 7 | 154 | 4.62e-67 | 204 |
| MS.gene65745.t1 | AT1G59940 | 57.233 | 159 | 54 | 4 | 3 | 160 | 32 | 177 | 2.04e-56 | 177 |
| MS.gene65745.t1 | AT1G59940 | 57.962 | 157 | 52 | 4 | 3 | 158 | 124 | 267 | 1.46e-54 | 175 |
| MS.gene65745.t1 | AT1G10470 | 55.556 | 162 | 57 | 5 | 1 | 161 | 17 | 164 | 2.94e-54 | 172 |
| MS.gene65745.t1 | AT1G10470 | 56.250 | 160 | 55 | 5 | 3 | 161 | 33 | 178 | 3.83e-54 | 172 |
| MS.gene65745.t1 | AT3G56380 | 55.634 | 142 | 55 | 2 | 3 | 144 | 19 | 152 | 2.95e-52 | 164 |
| MS.gene65745.t1 | AT3G48100 | 52.500 | 160 | 67 | 3 | 4 | 163 | 25 | 175 | 3.41e-52 | 164 |
| MS.gene65745.t1 | AT2G40670 | 53.521 | 142 | 60 | 1 | 3 | 144 | 28 | 163 | 2.84e-51 | 162 |
| MS.gene65745.t1 | AT5G62920 | 57.447 | 141 | 51 | 2 | 4 | 144 | 25 | 156 | 9.96e-51 | 161 |
| MS.gene65745.t1 | AT3G56380 | 55.245 | 143 | 55 | 3 | 3 | 144 | 19 | 153 | 1.68e-50 | 159 |
| MS.gene65745.t1 | AT2G40670 | 53.147 | 143 | 60 | 2 | 3 | 144 | 28 | 164 | 2.07e-49 | 157 |
| MS.gene65745.t1 | AT1G19050 | 50.000 | 158 | 69 | 2 | 3 | 159 | 23 | 171 | 3.55e-49 | 157 |
| MS.gene65745.t1 | AT1G74890 | 50.625 | 160 | 68 | 2 | 3 | 160 | 17 | 167 | 7.13e-49 | 157 |
| MS.gene65745.t1 | AT2G07440 | 66.667 | 60 | 20 | 0 | 91 | 150 | 9 | 68 | 4.05e-22 | 86.7 |
| MS.gene65745.t1 | AT1G10470 | 52.857 | 70 | 27 | 2 | 90 | 158 | 35 | 99 | 2.17e-16 | 73.2 |
| MS.gene65745.t1 | AT5G24470 | 28.777 | 139 | 79 | 3 | 6 | 144 | 54 | 172 | 4.94e-13 | 66.2 |
| MS.gene65745.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 5.94e-12 | 63.2 |
| MS.gene65745.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 5.94e-12 | 63.2 |
| MS.gene65745.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 5.94e-12 | 63.2 |
| MS.gene65745.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 6.24e-12 | 63.2 |
| MS.gene65745.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 1.22e-11 | 62.4 |
| MS.gene65745.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 1.22e-11 | 62.4 |
| MS.gene65745.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 1.22e-11 | 62.4 |
| MS.gene65745.t1 | AT2G46790 | 26.619 | 139 | 84 | 2 | 4 | 142 | 37 | 157 | 1.83e-11 | 61.6 |
| MS.gene65745.t1 | AT5G07210 | 30.000 | 140 | 76 | 3 | 5 | 144 | 17 | 134 | 2.04e-11 | 61.6 |
| MS.gene65745.t1 | AT2G46790 | 26.619 | 139 | 84 | 2 | 4 | 142 | 37 | 157 | 2.05e-11 | 61.6 |
| MS.gene65745.t1 | AT5G02810 | 26.277 | 137 | 83 | 2 | 6 | 142 | 80 | 198 | 3.53e-11 | 60.8 |
| MS.gene65745.t1 | AT2G25180 | 27.451 | 153 | 89 | 4 | 6 | 157 | 19 | 150 | 3.93e-11 | 60.8 |
Find 25 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGCACAGTTTCATATTT+TGG | 0.112277 | 3.2:+7789365 | None:intergenic |
| TCAGTTACTGTGGTTGATTC+TGG | 0.242120 | 3.2:+7789915 | MS.gene65745:intron |
| CTCAAAACCTCTTCATTTCA+TGG | 0.264136 | 3.2:+7789432 | MS.gene65745:CDS |
| GGCTTTGAAGTTTCTTGGTT+TGG | 0.274386 | 3.2:+7789944 | MS.gene65745:CDS |
| GTTTACCTGTTGATCCTTGA+TGG | 0.285196 | 3.2:-7790817 | None:intergenic |
| ACTAAGGCTTTGAAGTTTCT+TGG | 0.296459 | 3.2:+7789939 | MS.gene65745:CDS |
| TGTGGTTGATTCTGGTACTA+AGG | 0.342411 | 3.2:+7789923 | MS.gene65745:CDS |
| AGATCATAGCCTGTCATTCC+TGG | 0.369947 | 3.2:-7790180 | None:intergenic |
| TTAACATCAGATTGTTGAAC+TGG | 0.370927 | 3.2:-7790992 | None:intergenic |
| GTTTCTGCAGCAATAGTTTG+AGG | 0.420290 | 3.2:-7789993 | None:intergenic |
| ATGTTCCATCAAGGATCAAC+AGG | 0.450863 | 3.2:+7790812 | MS.gene65745:CDS |
| TACTGTATGCCAGGAATGAC+AGG | 0.454246 | 3.2:+7790171 | MS.gene65745:CDS |
| TTAATCAGATGCTTAGAAGA+AGG | 0.455962 | 3.2:+7790947 | MS.gene65745:intron |
| ATAACTGATTACTGTATGCC+AGG | 0.518630 | 3.2:+7790162 | MS.gene65745:CDS |
| ACCTAATCAACAACAAAAGA+AGG | 0.519626 | 3.2:+7791062 | MS.gene65745:CDS |
| TTGACAGAATGTTGATTGAA+AGG | 0.523765 | 3.2:+7789406 | MS.gene65745:CDS |
| AAAATTACCATGAAATGAAG+AGG | 0.534519 | 3.2:-7789439 | None:intergenic |
| TATTGCTGCAGAAACAGATC+AGG | 0.546049 | 3.2:+7790001 | MS.gene65745:CDS |
| TCTTGGTTTGGTTGAAGATG+AGG | 0.555035 | 3.2:+7789956 | MS.gene65745:CDS |
| CCTCAGAGAATGTTCCATCA+AGG | 0.587746 | 3.2:+7790803 | MS.gene65745:CDS |
| TCTGAGGACATAATCACCAC+TGG | 0.603381 | 3.2:-7790787 | None:intergenic |
| CAGATGCTTAGAAGAAGGAG+CGG | 0.630927 | 3.2:+7790952 | MS.gene65745:intron |
| GTTTGGTTGAAGATGAGGTG+AGG | 0.669904 | 3.2:+7789961 | MS.gene65745:CDS |
| TTCTCTTAAAGACATACCAG+TGG | 0.689344 | 3.2:+7790771 | MS.gene65745:CDS |
| CCTTGATGGAACATTCTCTG+AGG | 0.696368 | 3.2:-7790803 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAAAAAATTTAGAAAATA+TGG | + | chr3.2:7789637-7789656 | MS.gene65745:intron | 10.0% |
| !! | ACAAAAATAATATGATTATG+TGG | + | chr3.2:7789692-7789711 | MS.gene65745:intron | 15.0% |
| !! | TATGAATACTATCAAAAAAT+TGG | - | chr3.2:7790677-7790696 | None:intergenic | 15.0% |
| !!! | ATTCAAATAATTTTGTGAAT+TGG | + | chr3.2:7789516-7789535 | MS.gene65745:intron | 15.0% |
| !!! | TATTTGAATTTTGATGTAAA+AGG | - | chr3.2:7789505-7789524 | None:intergenic | 15.0% |
| !! | AAAAATCAAGGTAAATTCAT+TGG | + | chr3.2:7790209-7790228 | MS.gene65745:intron | 20.0% |
| !! | AAAATCAAAAATTTGTGGTT+TGG | - | chr3.2:7790455-7790474 | None:intergenic | 20.0% |
| !! | AATGATTAGACTAATACATA+TGG | + | chr3.2:7790040-7790059 | MS.gene65745:intron | 20.0% |
| !! | AGCATCTGATTAAATAAAAA+AGG | - | chr3.2:7790940-7790959 | None:intergenic | 20.0% |
| !! | GGTAATATGTAATGTTTATT+TGG | + | chr3.2:7789757-7789776 | MS.gene65745:intron | 20.0% |
| !!! | AAAACCACAATTTAAAATCT+TGG | - | chr3.2:7790420-7790439 | None:intergenic | 20.0% |
| !!! | AAATTTTGTAAAGAACAAAC+TGG | - | chr3.2:7789592-7789611 | None:intergenic | 20.0% |
| !!! | AGAAAATATATTTGATTTGC+AGG | + | chr3.2:7790741-7790760 | MS.gene65745:intron | 20.0% |
| !!! | ATGTATTAGTCTAATCATTT+AGG | - | chr3.2:7790039-7790058 | None:intergenic | 20.0% |
| !!! | CAATTTTGAACGAATTTTTT+TGG | + | chr3.2:7789736-7789755 | MS.gene65745:intron | 20.0% |
| !!! | GATGATGATGTTAATTTTTT+TGG | + | chr3.2:7790102-7790121 | MS.gene65745:intron | 20.0% |
| !!! | TATTTGAAAATAGTTTGTGT+TGG | + | chr3.2:7790233-7790252 | MS.gene65745:intron | 20.0% |
| !!! | TTTTCTCTCATATTTTTTAG+AGG | + | chr3.2:7789461-7789480 | MS.gene65745:intron | 20.0% |
| !!! | TTTTTTAATTTCAGTTACTG+TGG | + | chr3.2:7789905-7789924 | MS.gene65745:intron | 20.0% |
| ! | AAAATTACCATGAAATGAAG+AGG | - | chr3.2:7789442-7789461 | None:intergenic | 25.0% |
| ! | AGATTATAACTATCCCAATT+GGG | - | chr3.2:7790628-7790647 | None:intergenic | 25.0% |
| ! | TAGATTATAACTATCCCAAT+TGG | - | chr3.2:7790629-7790648 | None:intergenic | 25.0% |
| ! | TCACCAAAAAAGTAAAATTG+CGG | + | chr3.2:7790474-7790493 | MS.gene65745:intron | 25.0% |
| ! | TGAAATTGACAAGACAATAA+TGG | - | chr3.2:7790305-7790324 | None:intergenic | 25.0% |
| ! | TGGTGAAAATCAAAAATTTG+TGG | - | chr3.2:7790460-7790479 | None:intergenic | 25.0% |
| !! | ATCATCAGAATTTGAAATGA+TGG | + | chr3.2:7790333-7790352 | MS.gene65745:intron | 25.0% |
| !! | ATGACCAAGATTTTAAATTG+TGG | + | chr3.2:7790413-7790432 | MS.gene65745:intron | 25.0% |
| !! | GTCTTGTCAATTTCAAATTT+TGG | + | chr3.2:7790310-7790329 | MS.gene65745:intron | 25.0% |
| !! | TCATCAGAATTTGAAATGAT+GGG | + | chr3.2:7790334-7790353 | MS.gene65745:intron | 25.0% |
| !!! | AAACCGCAATTTTACTTTTT+TGG | - | chr3.2:7790480-7790499 | None:intergenic | 25.0% |
| !!! | ATATGATTATGTGGTTTGTT+TGG | + | chr3.2:7789701-7789720 | MS.gene65745:intron | 25.0% |
| !!! | TTTTGGTTAATTGTTTTTGC+AGG | + | chr3.2:7790119-7790138 | MS.gene65745:intron | 25.0% |
| ACCTAATCAACAACAAAAGA+AGG | + | chr3.2:7791062-7791081 | MS.gene65745:CDS | 30.0% | |
| AGATGTTCCAAGTTATTACT+TGG | + | chr3.2:7789804-7789823 | MS.gene65745:intron | 30.0% | |
| CTCGATTATATGCAATACTA+AGG | - | chr3.2:7790512-7790531 | None:intergenic | 30.0% | |
| GGATATCCAAAAAGGAAAAA+AGG | - | chr3.2:7790593-7790612 | None:intergenic | 30.0% | |
| TTAACATCAGATTGTTGAAC+TGG | - | chr3.2:7790995-7791014 | None:intergenic | 30.0% | |
| TTAATCAGATGCTTAGAAGA+AGG | + | chr3.2:7790947-7790966 | MS.gene65745:intron | 30.0% | |
| ! | ACTTTTGTCTTCAACAAATG+TGG | - | chr3.2:7791028-7791047 | None:intergenic | 30.0% |
| ! | TTGACAGAATGTTGATTGAA+AGG | + | chr3.2:7789406-7789425 | MS.gene65745:CDS | 30.0% |
| ! | TTTTTCCTTTTTGGATATCC+CGG | + | chr3.2:7790593-7790612 | MS.gene65745:intron | 30.0% |
| !!! | TCCTTCTTTTGTTGTTGATT+AGG | - | chr3.2:7791066-7791085 | None:intergenic | 30.0% |
| ATAACTGATTACTGTATGCC+AGG | + | chr3.2:7790162-7790181 | MS.gene65745:CDS | 35.0% | |
| CTCAAAACCTCTTCATTTCA+TGG | + | chr3.2:7789432-7789451 | MS.gene65745:CDS | 35.0% | |
| GTGTGTTCCAAGTAATAACT+TGG | - | chr3.2:7789814-7789833 | None:intergenic | 35.0% | |
| TGATCTGCTGAGAAAAATCA+AGG | + | chr3.2:7790197-7790216 | MS.gene65745:CDS | 35.0% | |
| TTCTCTTAAAGACATACCAG+TGG | + | chr3.2:7790771-7790790 | MS.gene65745:CDS | 35.0% | |
| ! | CTTGTTGTCAATCAAAATCG+AGG | + | chr3.2:7790560-7790579 | MS.gene65745:intron | 35.0% |
| ! | TTTGTGGTTTGGAAAAATCG+CGG | - | chr3.2:7790444-7790463 | None:intergenic | 35.0% |
| !! | ACTAAGGCTTTGAAGTTTCT+TGG | + | chr3.2:7789939-7789958 | MS.gene65745:CDS | 35.0% |
| !!! | CGTAGACCTTTTTTCCTTTT+TGG | + | chr3.2:7790584-7790603 | MS.gene65745:intron | 35.0% |
| !!! | CTCGATTTTGATTGACAACA+AGG | - | chr3.2:7790562-7790581 | None:intergenic | 35.0% |
| AACTTGGAACATCTCCTCTA+AGG | - | chr3.2:7789798-7789817 | None:intergenic | 40.0% | |
| ATGTTCCATCAAGGATCAAC+AGG | + | chr3.2:7790812-7790831 | MS.gene65745:CDS | 40.0% | |
| CATAACCGGGATATCCAAAA+AGG | - | chr3.2:7790601-7790620 | None:intergenic | 40.0% | |
| GTTTACCTGTTGATCCTTGA+TGG | - | chr3.2:7790820-7790839 | None:intergenic | 40.0% | |
| GTTTCTGCAGCAATAGTTTG+AGG | - | chr3.2:7789996-7790015 | None:intergenic | 40.0% | |
| TATTGCTGCAGAAACAGATC+AGG | + | chr3.2:7790001-7790020 | MS.gene65745:CDS | 40.0% | |
| TGGAACACACTTGATACAGA+TGG | + | chr3.2:7789824-7789843 | MS.gene65745:intron | 40.0% | |
| ! | ATCTCCTCTAAGGATTTCCA+CGG | - | chr3.2:7789788-7789807 | None:intergenic | 40.0% |
| ! | TCAGTTACTGTGGTTGATTC+TGG | + | chr3.2:7789915-7789934 | MS.gene65745:intron | 40.0% |
| ! | TGTGGTTGATTCTGGTACTA+AGG | + | chr3.2:7789923-7789942 | MS.gene65745:CDS | 40.0% |
| !! | GGCTTTGAAGTTTCTTGGTT+TGG | + | chr3.2:7789944-7789963 | MS.gene65745:CDS | 40.0% |
| !! | TCTTGGTTTGGTTGAAGATG+AGG | + | chr3.2:7789956-7789975 | MS.gene65745:CDS | 40.0% |
| AGATCATAGCCTGTCATTCC+TGG | - | chr3.2:7790183-7790202 | None:intergenic | 45.0% | |
| ATACAGATGGATCTGCACTG+CGG | + | chr3.2:7789837-7789856 | MS.gene65745:intron | 45.0% | |
| CAGATGCTTAGAAGAAGGAG+CGG | + | chr3.2:7790952-7790971 | MS.gene65745:intron | 45.0% | |
| CCAATTGGGATGTCATAACC+GGG | - | chr3.2:7790614-7790633 | None:intergenic | 45.0% | |
| CCCAATTGGGATGTCATAAC+CGG | - | chr3.2:7790615-7790634 | None:intergenic | 45.0% | |
| CCGGTTATGACATCCCAATT+GGG | + | chr3.2:7790612-7790631 | MS.gene65745:intron | 45.0% | |
| CCTCAGAGAATGTTCCATCA+AGG | + | chr3.2:7790803-7790822 | MS.gene65745:CDS | 45.0% | |
| CCTTGATGGAACATTCTCTG+AGG | - | chr3.2:7790806-7790825 | None:intergenic | 45.0% | |
| GTTTGGTTGAAGATGAGGTG+AGG | + | chr3.2:7789961-7789980 | MS.gene65745:CDS | 45.0% | |
| TACTGTATGCCAGGAATGAC+AGG | + | chr3.2:7790171-7790190 | MS.gene65745:CDS | 45.0% | |
| TCTGAGGACATAATCACCAC+TGG | - | chr3.2:7790790-7790809 | None:intergenic | 45.0% | |
| ! | ATGTTTATTTGGAACCGCCG+TGG | + | chr3.2:7789768-7789787 | MS.gene65745:intron | 45.0% |
| !! | ATTTATTAATGTTAAAAATT+TGG | + | chr3.2:7790076-7790095 | MS.gene65745:intron | 5.0% |
| !!! | AAATTTTTAACATTAATAAA+TGG | - | chr3.2:7790077-7790096 | None:intergenic | 5.0% |
| CCCGGTTATGACATCCCAAT+TGG | + | chr3.2:7790611-7790630 | MS.gene65745:intron | 50.0% | |
| ! | TCCTCTAAGGATTTCCACGG+CGG | - | chr3.2:7789785-7789804 | None:intergenic | 50.0% |
| ACCGCCGTGGAAATCCTTAG+AGG | + | chr3.2:7789781-7789800 | MS.gene65745:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 7789366 | 7791117 | 7789366 | ID=MS.gene65745 |
| chr3.2 | mRNA | 7789366 | 7791117 | 7789366 | ID=MS.gene65745.t1;Parent=MS.gene65745 |
| chr3.2 | exon | 7789366 | 7789453 | 7789366 | ID=MS.gene65745.t1.exon1;Parent=MS.gene65745.t1 |
| chr3.2 | CDS | 7789366 | 7789453 | 7789366 | ID=cds.MS.gene65745.t1;Parent=MS.gene65745.t1 |
| chr3.2 | exon | 7789919 | 7790022 | 7789919 | ID=MS.gene65745.t1.exon2;Parent=MS.gene65745.t1 |
| chr3.2 | CDS | 7789919 | 7790022 | 7789919 | ID=cds.MS.gene65745.t1;Parent=MS.gene65745.t1 |
| chr3.2 | exon | 7790141 | 7790218 | 7790141 | ID=MS.gene65745.t1.exon3;Parent=MS.gene65745.t1 |
| chr3.2 | CDS | 7790141 | 7790218 | 7790141 | ID=cds.MS.gene65745.t1;Parent=MS.gene65745.t1 |
| chr3.2 | exon | 7790763 | 7790833 | 7790763 | ID=MS.gene65745.t1.exon4;Parent=MS.gene65745.t1 |
| chr3.2 | CDS | 7790763 | 7790833 | 7790763 | ID=cds.MS.gene65745.t1;Parent=MS.gene65745.t1 |
| chr3.2 | exon | 7790955 | 7791117 | 7790955 | ID=MS.gene65745.t1.exon5;Parent=MS.gene65745.t1 |
| chr3.2 | CDS | 7790955 | 7791117 | 7790955 | ID=cds.MS.gene65745.t1;Parent=MS.gene65745.t1 |
| Gene Sequence |
| Protein sequence |
