AlfalfaGEDB | MS.gene051790

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051790.t1	XP_003625863.1	94.7	57	3	0	1	57	1	57	2.00E-18	100.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051790.t1	G7KQY9	94.7	57	3	0	1	57	1	57	1.4e-18	100.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049178	MS.gene051790	0.811796	5.85E-51	-1.69E-46
MS.gene049501	MS.gene051790	0.815321	9.81E-52	-1.69E-46
MS.gene050228	MS.gene051790	0.815779	7.76E-52	-1.69E-46
MS.gene050719	MS.gene051790	0.816314	5.90E-52	-1.69E-46
MS.gene050721	MS.gene051790	0.815746	7.89E-52	-1.69E-46
MS.gene050724	MS.gene051790	0.809437	1.89E-50	-1.69E-46
MS.gene051247	MS.gene051790	0.810671	1.03E-50	-1.69E-46
MS.gene051790	MS.gene060637	0.81295	3.28E-51	-1.69E-46
MS.gene051790	MS.gene062564	0.811462	6.92E-51	-1.69E-46
MS.gene051790	MS.gene065908	0.810763	9.80E-51	-1.69E-46
MS.gene051790	MS.gene06705	0.803146	4.01E-49	-1.69E-46
MS.gene051790	MS.gene072624	0.813122	3.00E-51	-1.69E-46
MS.gene051790	MS.gene072627	0.812661	3.79E-51	-1.69E-46
MS.gene051790	MS.gene072630	0.812707	3.70E-51	-1.69E-46
MS.gene051790	MS.gene074257	0.815058	1.12E-51	-1.69E-46
MS.gene051790	MS.gene08716	0.802167	6.38E-49	-1.69E-46
MS.gene051790	MS.gene08767	0.820436	6.87E-53	-1.69E-46
MS.gene051790	MS.gene20621	0.832946	7.07E-56	-1.69E-46
MS.gene051790	MS.gene21200	0.820634	6.18E-53	-1.69E-46
MS.gene051790	MS.gene23013	0.852045	5.97E-61	-1.69E-46
MS.gene051790	MS.gene23571	0.805283	1.44E-49	-1.69E-46
MS.gene051790	MS.gene27041	0.802989	4.32E-49	-1.69E-46
MS.gene051790	MS.gene28322	0.811877	5.62E-51	-1.69E-46
MS.gene051790	MS.gene28606	0.814591	1.43E-51	-1.69E-46
MS.gene051790	MS.gene32555	0.810973	8.83E-51	-1.69E-46
MS.gene051790	MS.gene32589	0.800366	1.49E-48	-1.69E-46
MS.gene051790	MS.gene34011	0.802523	5.39E-49	-1.69E-46
MS.gene051790	MS.gene36899	0.811475	6.87E-51	-1.69E-46
MS.gene051790	MS.gene39554	0.806901	6.57E-50	-1.69E-46
MS.gene051790	MS.gene41630	0.805148	1.54E-49	-1.69E-46
MS.gene051790	MS.gene43289	0.806087	9.75E-50	-1.69E-46
MS.gene051790	MS.gene48054	0.804296	2.31E-49	-1.69E-46
MS.gene051790	MS.gene49486	0.80788	4.07E-50	-1.69E-46
MS.gene051790	MS.gene49681	0.800118	1.67E-48	-1.69E-46
MS.gene051790	MS.gene50163	0.810606	1.06E-50	-1.69E-46
MS.gene051790	MS.gene54766	0.800402	1.47E-48	-1.69E-46
MS.gene051790	MS.gene58468	0.803212	3.88E-49	-1.69E-46
MS.gene051790	MS.gene60343	0.803144	4.01E-49	-1.69E-46
MS.gene051790	MS.gene63887	0.806575	7.70E-50	-1.69E-46
MS.gene051790	MS.gene64671	0.805999	1.02E-49	-1.69E-46
MS.gene051790	MS.gene65745	0.802065	6.70E-49	-1.69E-46
MS.gene051790	MS.gene75185	0.805621	1.22E-49	-1.69E-46
MS.gene051790	MS.gene77759	0.801119	1.05E-48	-1.69E-46
MS.gene051790	MS.gene78247	0.809003	2.34E-50	-1.69E-46
MS.gene051790	MS.gene81078	0.802117	6.53E-49	-1.69E-46
MS.gene051790	MS.gene81381	0.802136	6.47E-49	-1.69E-46
MS.gene051790	MS.gene90642	0.803127	4.04E-49	-1.69E-46
MS.gene051790	MS.gene96598	0.809978	1.45E-50	-1.69E-46
MS.gene051790	MS.gene98848	0.807185	5.72E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051790.t1	MTR_7g108100	94.737	57	3	0	1	57	1	57	4.30e-33	111

Find 0 sgRNAs with CRISPR-Local

Find 10 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TGACGATGAAGAAGAATAAA+AGG	+	51715:10371-10390	MS.gene051790:CDS	30.0%
	AATGCCAAATCCAATAACAG+TGG	+	51715:10445-10464	MS.gene051790:CDS	35.0%
	CGATGAAGAAGAATAAAAGG+AGG	+	51715:10374-10393	MS.gene051790:CDS	35.0%
	GTATCCACTGTTATTGGATT+TGG	-	51715:10452-10471	None:intergenic	35.0%
	TGGATTGTATCCACTGTTAT+TGG	-	51715:10458-10477	None:intergenic	35.0%
!!	TAGCGAAAGCATTAAGTGAA+AGG	-	51715:10426-10445	None:intergenic	35.0%
	ATAAAAGGAGGAACGTTTCG+AGG	+	51715:10386-10405	MS.gene051790:CDS	40.0%
	AGGAACGTTTCGAGGTTAGG+TGG	+	51715:10394-10413	MS.gene051790:CDS	50.0%
	AGGAGGAACGTTTCGAGGTT+AGG	+	51715:10391-10410	MS.gene051790:CDS	50.0%
	GTTTCGAGGTTAGGTGGAAG+TGG	+	51715:10400-10419	MS.gene051790:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
51715	gene	10316	10487	10316	ID=MS.gene051790
51715	mRNA	10316	10487	10316	ID=MS.gene051790.t1;Parent=MS.gene051790
51715	exon	10316	10487	10316	ID=MS.gene051790.t1.exon1;Parent=MS.gene051790.t1
51715	CDS	10316	10487	10316	ID=cds.MS.gene051790.t1;Parent=MS.gene051790.t1

Gene Sequence	>MS.gene051790 ATGACGAAAAATAATGATGAACGCAACGATAATCATGAAGATAAGCAGAAACAATTGACGATGAAGAAGAATAAAAGGAGGAACGTTTCGAGGTTAGGTGGAAGTGGCCTTTCACTTAATGCTTTCGCTAATGCCAAATCCAATAACAGTGGATACAATCCATCTCTCATAA
Protein sequence	>MS.gene051790.t1 MTKNNDERNDNHEDKQKQLTMKKNKRRNVSRLGGSGLSLNAFANAKSNNSGYNPSLI

M. sativa cultivar XinJiangDaYe / MS.gene051790