Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65858.t1 | XP_003598693.2 | 96.6 | 824 | 28 | 0 | 1 | 824 | 7 | 830 | 0.00E+00 | 1436.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65858.t1 | Q96G21 | 57.1 | 224 | 91 | 3 | 828 | 1050 | 69 | 288 | 1.2e-72 | 276.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65858.t1 | G7IW55 | 96.6 | 824 | 28 | 0 | 1 | 824 | 1 | 824 | 0.0e+00 | 1436.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049958 | MS.gene65858 | 0.805675 | 1.19E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene65858 | 0.813621 | 2.33E-51 | -1.69E-46 |
| MS.gene050760 | MS.gene65858 | 0.811097 | 8.30E-51 | -1.69E-46 |
| MS.gene050962 | MS.gene65858 | 0.80108 | 1.07E-48 | -1.69E-46 |
| MS.gene050963 | MS.gene65858 | 0.814058 | 1.87E-51 | -1.69E-46 |
| MS.gene053643 | MS.gene65858 | 0.802341 | 5.87E-49 | -1.69E-46 |
| MS.gene05439 | MS.gene65858 | 0.805243 | 1.47E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65858.t1 | MTR_3g019360 | 96.602 | 824 | 28 | 0 | 1 | 824 | 1 | 824 | 0.0 | 1594 |
| MS.gene65858.t1 | MTR_3g019370 | 90.726 | 248 | 22 | 1 | 804 | 1050 | 44 | 291 | 8.61e-163 | 481 |
| MS.gene65858.t1 | MTR_8g027140 | 34.039 | 661 | 420 | 7 | 178 | 824 | 345 | 1003 | 1.45e-98 | 335 |
| MS.gene65858.t1 | MTR_7g117890 | 32.013 | 631 | 414 | 6 | 207 | 824 | 370 | 998 | 5.29e-85 | 296 |
| MS.gene65858.t1 | MTR_3g115670 | 26.822 | 686 | 459 | 18 | 175 | 818 | 117 | 801 | 8.58e-48 | 184 |
| MS.gene65858.t1 | MTR_1g076400 | 27.911 | 627 | 399 | 18 | 225 | 818 | 392 | 998 | 4.16e-47 | 183 |
| MS.gene65858.t1 | MTR_8g023820 | 34.766 | 256 | 128 | 5 | 831 | 1050 | 102 | 354 | 1.22e-37 | 145 |
| MS.gene65858.t1 | MTR_3g466220 | 32.258 | 155 | 101 | 1 | 291 | 445 | 572 | 722 | 2.70e-12 | 71.6 |
| MS.gene65858.t1 | MTR_3g466220 | 32.258 | 155 | 101 | 1 | 291 | 445 | 593 | 743 | 3.50e-12 | 71.2 |
| MS.gene65858.t1 | MTR_7g097020 | 28.495 | 186 | 130 | 2 | 240 | 423 | 470 | 654 | 1.14e-11 | 69.3 |
| MS.gene65858.t1 | MTR_1g104870 | 28.796 | 191 | 122 | 6 | 232 | 414 | 220 | 404 | 2.89e-11 | 68.2 |
| MS.gene65858.t1 | MTR_7g094900 | 28.342 | 187 | 128 | 6 | 232 | 414 | 226 | 410 | 9.42e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65858.t1 | AT1G63780 | 69.478 | 249 | 74 | 2 | 804 | 1050 | 44 | 292 | 2.77e-125 | 384 |
| MS.gene65858.t1 | AT1G20780 | 27.770 | 677 | 452 | 18 | 178 | 818 | 113 | 788 | 5.79e-45 | 175 |
| MS.gene65858.t1 | AT1G20780 | 27.770 | 677 | 452 | 18 | 178 | 818 | 113 | 788 | 5.79e-45 | 175 |
| MS.gene65858.t1 | AT1G20780 | 27.770 | 677 | 452 | 18 | 178 | 818 | 113 | 788 | 5.79e-45 | 175 |
| MS.gene65858.t1 | AT1G76390 | 28.416 | 644 | 411 | 18 | 218 | 818 | 162 | 798 | 5.29e-44 | 172 |
| MS.gene65858.t1 | AT1G76390 | 28.416 | 644 | 411 | 18 | 218 | 818 | 162 | 798 | 5.29e-44 | 172 |
| MS.gene65858.t1 | AT4G01560 | 37.946 | 224 | 117 | 5 | 842 | 1050 | 127 | 343 | 5.58e-39 | 149 |
| MS.gene65858.t1 | AT1G68940 | 25.841 | 654 | 424 | 20 | 178 | 778 | 387 | 1032 | 2.12e-36 | 149 |
| MS.gene65858.t1 | AT1G68940 | 25.841 | 654 | 424 | 20 | 178 | 778 | 387 | 1032 | 2.36e-36 | 149 |
| MS.gene65858.t1 | AT1G68940 | 25.841 | 654 | 424 | 20 | 178 | 778 | 334 | 979 | 3.68e-36 | 149 |
| MS.gene65858.t1 | AT2G23140 | 32.903 | 155 | 100 | 1 | 291 | 445 | 583 | 733 | 2.80e-12 | 71.6 |
| MS.gene65858.t1 | AT2G23140 | 32.903 | 155 | 100 | 1 | 291 | 445 | 583 | 733 | 2.80e-12 | 71.6 |
| MS.gene65858.t1 | AT2G23140 | 32.903 | 155 | 100 | 1 | 291 | 445 | 586 | 736 | 2.80e-12 | 71.6 |
| MS.gene65858.t1 | AT2G23140 | 32.903 | 155 | 100 | 1 | 291 | 445 | 394 | 544 | 4.41e-12 | 70.9 |
| MS.gene65858.t1 | AT2G23140 | 32.903 | 155 | 100 | 1 | 291 | 445 | 394 | 544 | 4.41e-12 | 70.9 |
| MS.gene65858.t1 | AT3G01400 | 28.333 | 240 | 132 | 6 | 217 | 441 | 52 | 266 | 6.61e-12 | 68.9 |
| MS.gene65858.t1 | AT3G46510 | 29.048 | 210 | 145 | 3 | 262 | 469 | 365 | 572 | 4.11e-11 | 67.8 |
Find 167 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTTGCAAGATGAAATT+TGG | 0.045920 | 3.2:+9763176 | MS.gene65858:CDS |
| TATGGTCCTACTGCATATTT+TGG | 0.152617 | 3.2:+9768505 | MS.gene65858:CDS |
| ACACGATGCAGCAAAGTTAT+TGG | 0.195639 | 3.2:+9761467 | MS.gene65858:CDS |
| AATAGATGACCTTGAATTAT+AGG | 0.201280 | 3.2:-9762386 | None:intergenic |
| ACTTCTTAGCAATTGAATTA+TGG | 0.217153 | 3.2:-9760865 | None:intergenic |
| TCCTTCAATTCTACAGATTT+AGG | 0.221306 | 3.2:-9770422 | None:intergenic |
| AATTTCATTGCGAAATTATC+AGG | 0.234488 | 3.2:+9763211 | MS.gene65858:CDS |
| CAAGATGAAATTTGGGAAAA+TGG | 0.257233 | 3.2:+9763184 | MS.gene65858:CDS |
| TCCTCGACTTATCGAAATAT+TGG | 0.262451 | 3.2:+9763105 | MS.gene65858:CDS |
| TTGCTAAGAAGTATTGCTTT+TGG | 0.266379 | 3.2:+9760876 | MS.gene65858:CDS |
| GTTAATGAGAAGCGGAAAAT+TGG | 0.268152 | 3.2:+9760761 | MS.gene65858:CDS |
| CATTCTAAAACATCTGTTTC+CGG | 0.297484 | 3.2:+9770182 | MS.gene65858:CDS |
| TCAAGTGGTTCTTATTGATT+TGG | 0.300541 | 3.2:+9763354 | MS.gene65858:CDS |
| GCTTTCAACGCTGAAAGTTT+TGG | 0.309458 | 3.2:+9760212 | MS.gene65858:CDS |
| GCTGCATCGTGTGAAGCAAC+TGG | 0.315559 | 3.2:-9761456 | None:intergenic |
| ATAGATGACCTTGAATTATA+GGG | 0.320252 | 3.2:-9762385 | None:intergenic |
| CACAAAATTCAATCTCTCTT+AGG | 0.321670 | 3.2:+9762966 | MS.gene65858:CDS |
| GATGTTGGAGAAAATATTTA+AGG | 0.323077 | 3.2:+9763297 | MS.gene65858:CDS |
| TCGATTAAGCTATTTGTTGA+TGG | 0.326299 | 3.2:-9762785 | None:intergenic |
| AACATCTTCGTTGACGAGTA+TGG | 0.341023 | 3.2:-9762327 | None:intergenic |
| GAAGAACATAGAGTGAAATA+TGG | 0.348558 | 3.2:+9763322 | MS.gene65858:CDS |
| TCTCTTGCAAGATGAAATTT+GGG | 0.351691 | 3.2:+9763177 | MS.gene65858:CDS |
| CAACTTGGATTCAAGTTTCC+CGG | 0.354876 | 3.2:-9762132 | None:intergenic |
| TGGCTGAGGCTGGTTACTTT+AGG | 0.356935 | 3.2:+9761526 | MS.gene65858:CDS |
| ATGACTTTCATCAAGATATT+CGG | 0.361296 | 3.2:-9762585 | None:intergenic |
| ATGTCCTCAATTTGCTTAGT+AGG | 0.363239 | 3.2:-9760450 | None:intergenic |
| CGATTCATTCTTTCAGCATT+GGG | 0.364675 | 3.2:-9767386 | None:intergenic |
| TCATCATCAATGTGTGATCT+TGG | 0.367314 | 3.2:-9767136 | None:intergenic |
| TTGATTCGATCAGGAATTAC+AGG | 0.367426 | 3.2:+9762209 | MS.gene65858:CDS |
| CATCTGTGCTCATGACTCTA+AGG | 0.368158 | 3.2:+9762261 | MS.gene65858:CDS |
| CTCGTGAAAATGTTTATTAC+CGG | 0.370356 | 3.2:+9762113 | MS.gene65858:CDS |
| AATAATATGCGGATAAGCTT+CGG | 0.371784 | 3.2:-9768657 | None:intergenic |
| TCTGTAGAATTGAAGGAAAT+TGG | 0.387754 | 3.2:+9770428 | MS.gene65858:CDS |
| CAACTGGGTCATCACCATTA+AGG | 0.387852 | 3.2:-9761440 | None:intergenic |
| ATAGTTTGTCATCTACCATA+TGG | 0.392644 | 3.2:+9768487 | MS.gene65858:CDS |
| GAGGACATGACGCATGATAT+CGG | 0.392793 | 3.2:+9760465 | MS.gene65858:CDS |
| ATGTTGGTCGCCATCCTTAA+TGG | 0.395954 | 3.2:+9761426 | MS.gene65858:CDS |
| TCACTCAATTCATTCAAGAT+TGG | 0.396017 | 3.2:-9760321 | None:intergenic |
| GAAAATCAATAGACACTTCA+AGG | 0.397793 | 3.2:-9760518 | None:intergenic |
| CTTTCAAGCCCTATAATTCA+AGG | 0.411340 | 3.2:+9762377 | MS.gene65858:CDS |
| TGACTATACAGATGTTATCT+TGG | 0.414988 | 3.2:+9768432 | MS.gene65858:CDS |
| TAATCAAAATGCACTTCATA+TGG | 0.415025 | 3.2:+9761506 | MS.gene65858:CDS |
| CATGATATCGGCCGGTCGTT+GGG | 0.416160 | 3.2:+9760477 | MS.gene65858:CDS |
| TGCAAAAGTATTAGCAGAGT+TGG | 0.421087 | 3.2:+9763411 | MS.gene65858:CDS |
| TAATGGCGACAGCACTTTCT+CGG | 0.425418 | 3.2:+9762033 | MS.gene65858:CDS |
| CGAGATATAGTCAGACTTGT+TGG | 0.426562 | 3.2:-9770241 | None:intergenic |
| CCGATCCGCCTTCGAACTGC+TGG | 0.426866 | 3.2:-9761381 | None:intergenic |
| CAAGCGTCTAGTTTCATGTA+AGG | 0.427669 | 3.2:+9760827 | MS.gene65858:CDS |
| AATAGCATGTCTTCACATCT+TGG | 0.428772 | 3.2:+9762419 | MS.gene65858:CDS |
| AGTCTGACTATATCTCGTTC+AGG | 0.430003 | 3.2:+9770247 | MS.gene65858:CDS |
| GAGAAAGTGCTGTCGCCATT+AGG | 0.433436 | 3.2:-9762031 | None:intergenic |
| TCCTAAATCTGTAGAATTGA+AGG | 0.443900 | 3.2:+9770421 | MS.gene65858:CDS |
| TCACAATATGCGTTTGTTGA+AGG | 0.445307 | 3.2:-9763022 | None:intergenic |
| GTGCAACGTTTGATTCGATC+AGG | 0.445518 | 3.2:+9762200 | MS.gene65858:CDS |
| CAAGAAACTACAACTCGTTT+CGG | 0.446948 | 3.2:+9762850 | MS.gene65858:CDS |
| ATAATATGCGGATAAGCTTC+GGG | 0.448452 | 3.2:-9768656 | None:intergenic |
| GAGTGATAACAGCGTTGTAT+TGG | 0.453271 | 3.2:+9760338 | MS.gene65858:CDS |
| GCATGATATCGGCCGGTCGT+TGG | 0.454254 | 3.2:+9760476 | MS.gene65858:CDS |
| ATAAAGACAACATGGAAAAG+AGG | 0.455414 | 3.2:+9760175 | None:intergenic |
| AGGAAAGTAACATCAAAATC+AGG | 0.456937 | 3.2:+9762507 | MS.gene65858:CDS |
| AACTGTTTGAGTGGAGCGCT+TGG | 0.459070 | 3.2:-9767214 | None:intergenic |
| TAACATCAAAATCAGGTGTA+AGG | 0.461132 | 3.2:+9762514 | MS.gene65858:CDS |
| AAGTAACCGATATACTCAAA+AGG | 0.462832 | 3.2:+9762705 | MS.gene65858:CDS |
| GAGTGGAGCGCTTGGATCCC+TGG | 0.464338 | 3.2:-9767206 | None:intergenic |
| ACGATTCATTCTTTCAGCAT+TGG | 0.464351 | 3.2:-9767387 | None:intergenic |
| TGACAAACTATTAAACCATC+TGG | 0.466080 | 3.2:-9768475 | None:intergenic |
| GTTGTTCCTTGCAGGTTACA+AGG | 0.469398 | 3.2:+9768597 | MS.gene65858:intron |
| AAATATGCAGTAGGACCATA+TGG | 0.471997 | 3.2:-9768502 | None:intergenic |
| ATGTTACTTTCCTTAAGAAA+AGG | 0.478135 | 3.2:-9762497 | None:intergenic |
| CATCATCAATGTGTGATCTT+GGG | 0.478264 | 3.2:-9767135 | None:intergenic |
| TCAAGGGTGTATTGTTATGT+TGG | 0.478969 | 3.2:+9761410 | MS.gene65858:CDS |
| CTCAATTCATTCAAGATTGG+TGG | 0.479413 | 3.2:-9760318 | None:intergenic |
| TGTCCTCAATTTGCTTAGTA+GGG | 0.480003 | 3.2:-9760449 | None:intergenic |
| GTTCACCAATCACAAAATCA+AGG | 0.482327 | 3.2:+9762918 | MS.gene65858:CDS |
| AGGCGGATCGGAAGAATTCA+AGG | 0.486451 | 3.2:+9761393 | MS.gene65858:CDS |
| TTCCGTGTAGTGTTCATGTA+AGG | 0.489124 | 3.2:-9771146 | None:intergenic |
| GATCACAGCAAACTTACTCT+TGG | 0.496150 | 3.2:+9762068 | MS.gene65858:CDS |
| ATGATGAATGCAAGATTTGA+CGG | 0.497379 | 3.2:+9760570 | MS.gene65858:CDS |
| TCCACTCAAACAGTTTGTAA+AGG | 0.502089 | 3.2:+9767222 | MS.gene65858:CDS |
| TGCTAAGAAATCTGAAATTG+AGG | 0.502480 | 3.2:+9760254 | MS.gene65858:CDS |
| ACCTTTACAAACTGTTTGAG+TGG | 0.503052 | 3.2:-9767223 | None:intergenic |
| CAAGCAAAACTCCCAACGAC+CGG | 0.505505 | 3.2:-9760488 | None:intergenic |
| GGCGACAGCACTTTCTCGGT+TGG | 0.505523 | 3.2:+9762037 | MS.gene65858:CDS |
| GCCATCAATTCGAAAATCGT+TGG | 0.508431 | 3.2:+9760365 | MS.gene65858:CDS |
| ATGAGTGAAACGAGGACGGT+TGG | 0.508455 | 3.2:+9760633 | MS.gene65858:CDS |
| AGAAGAGAGGCGGGAAGCAG+TGG | 0.508757 | 3.2:+9761332 | MS.gene65858:CDS |
| TGGTACAATGCAGGAGAAGA+TGG | 0.508804 | 3.2:+9761260 | MS.gene65858:intron |
| CAGTGGTGAAGTCTCTTACA+AGG | 0.510345 | 3.2:+9761304 | MS.gene65858:CDS |
| AAATTCTGCTAACCACATCC+AGG | 0.510783 | 3.2:+9767188 | MS.gene65858:CDS |
| AGTGAAAAGGCGGCTGCGGT+TGG | 0.510804 | 3.2:+9762650 | MS.gene65858:CDS |
| TGCATTTAAAGATGACAACT+TGG | 0.513632 | 3.2:-9762147 | None:intergenic |
| ACAAAATAGATATCAAAAGC+TGG | 0.514590 | 3.2:-9762739 | None:intergenic |
| AAACTTACTCTTGGAGAAGA+TGG | 0.518674 | 3.2:+9762077 | MS.gene65858:CDS |
| TGACATGAACAAGATCCTAA+TGG | 0.520169 | 3.2:+9762016 | MS.gene65858:CDS |
| AAGAATGAATCGTGGTGGTC+AGG | 0.523960 | 3.2:+9767397 | MS.gene65858:CDS |
| AGCTTCGGGCATGGTTCCAA+CGG | 0.525645 | 3.2:-9768642 | None:intergenic |
| CAACATGGAAAACTCAGAAA+AGG | 0.525821 | 3.2:-9760283 | None:intergenic |
| GCCACTAGTTCAGTATTTGA+AGG | 0.526366 | 3.2:+9761548 | MS.gene65858:CDS |
| GCACTTCATATGGCTGAGGC+TGG | 0.530551 | 3.2:+9761516 | MS.gene65858:CDS |
| AGTAACCGATATACTCAAAA+GGG | 0.530566 | 3.2:+9762706 | MS.gene65858:CDS |
| CAACTCGTTTCGGTACAACA+TGG | 0.532519 | 3.2:+9762860 | MS.gene65858:CDS |
| CGTGCAAGAATAGCTGATGC+TGG | 0.537238 | 3.2:-9762287 | None:intergenic |
| GCAGATAAAATTAGGAACAG+TGG | 0.540090 | 3.2:+9771088 | MS.gene65858:intron |
| TAAAGACAACATGGAAAAGA+GGG | 0.541292 | 3.2:+9760176 | None:intergenic |
| GCATCATATATATGAAAAGC+AGG | 0.545916 | 3.2:+9770394 | MS.gene65858:CDS |
| AGAGAGTGAAAAGGCGGCTG+CGG | 0.546328 | 3.2:+9762646 | MS.gene65858:CDS |
| CTAGTTCAGTATTTGAAGGA+AGG | 0.546371 | 3.2:+9761552 | MS.gene65858:CDS |
| AATATTGGAAGATAAAGAGA+AGG | 0.547474 | 3.2:+9763120 | MS.gene65858:CDS |
| GAAGAGAGGCGGGAAGCAGT+GGG | 0.547932 | 3.2:+9761333 | MS.gene65858:CDS |
| AGCTTAATCGAGAATGCTAC+CGG | 0.548988 | 3.2:+9762797 | MS.gene65858:CDS |
| AACTCGTTTCGGTACAACAT+GGG | 0.549823 | 3.2:+9762861 | MS.gene65858:CDS |
| AAGGGACTCAGAAGAGAGGC+GGG | 0.551173 | 3.2:+9761323 | MS.gene65858:CDS |
| AACTAGACGCTTGAAAAGAA+AGG | 0.562900 | 3.2:-9760817 | None:intergenic |
| TCCAATATTTCGATAAGTCG+AGG | 0.565498 | 3.2:-9763106 | None:intergenic |
| AGTCTCACTTATGAGACTAA+AGG | 0.568267 | 3.2:+9760737 | MS.gene65858:CDS |
| ACATGAACACTACACGGAAG+AGG | 0.568800 | 3.2:+9771150 | MS.gene65858:CDS |
| GCATATTGTGAAGTTCATGA+TGG | 0.569594 | 3.2:+9763034 | MS.gene65858:CDS |
| ATATGGAGAATCTGCTCAAG+TGG | 0.571666 | 3.2:+9763339 | MS.gene65858:CDS |
| AGTGGTGAAGTCTCTTACAA+GGG | 0.571725 | 3.2:+9761305 | MS.gene65858:CDS |
| CTAACGTTCCAGCAGTTCGA+AGG | 0.573214 | 3.2:+9761373 | MS.gene65858:CDS |
| TCTAGAAGTTGGTGATGCAA+AGG | 0.574108 | 3.2:+9763255 | MS.gene65858:CDS |
| TCGTGAAAATGTTTATTACC+GGG | 0.577320 | 3.2:+9762114 | MS.gene65858:CDS |
| ATCCACATCAGAGAGTGAAA+AGG | 0.578700 | 3.2:+9762637 | MS.gene65858:CDS |
| TGGTAATTTCTCAACCAACA+TGG | 0.579200 | 3.2:-9760298 | None:intergenic |
| TCCTTCAAATACTGAACTAG+TGG | 0.585593 | 3.2:-9761549 | None:intergenic |
| AAATGCACTTCATATGGCTG+AGG | 0.585763 | 3.2:+9761512 | MS.gene65858:CDS |
| CCAGCAGTTCGAAGGCGGAT+CGG | 0.587143 | 3.2:+9761381 | MS.gene65858:CDS |
| ATCTGTGCTCATGACTCTAA+GGG | 0.588747 | 3.2:+9762262 | MS.gene65858:CDS |
| AGTAATCCAAAATATGCAGT+AGG | 0.590553 | 3.2:-9768511 | None:intergenic |
| TGTCTGATGAATTCGTGAAG+CGG | 0.592028 | 3.2:-9762829 | None:intergenic |
| ACGTTCCAGCAGTTCGAAGG+CGG | 0.594463 | 3.2:+9761376 | MS.gene65858:CDS |
| TCTGTAAACAGTTAGGTGAA+AGG | 0.595153 | 3.2:+9770151 | MS.gene65858:intron |
| ACACCCTACTAAGCAAATTG+AGG | 0.595925 | 3.2:+9760446 | MS.gene65858:CDS |
| CGTGAAGCGGTTTATAACAC+CGG | 0.597145 | 3.2:-9762816 | None:intergenic |
| CTAAAGGAGTTAATGAGAAG+CGG | 0.597717 | 3.2:+9760753 | MS.gene65858:CDS |
| AGCGCTTGGATCCCTGGATG+TGG | 0.601199 | 3.2:-9767200 | None:intergenic |
| ATTAGAGACAGAAAAGCCGT+TGG | 0.603528 | 3.2:+9768626 | MS.gene65858:CDS |
| AATGCAGGAGAAGATGGTTG+AGG | 0.605540 | 3.2:+9761266 | MS.gene65858:intron |
| CTGCATCGTGTGAAGCAACT+GGG | 0.609262 | 3.2:-9761455 | None:intergenic |
| CATCTGTATAGTCATGTGAT+CGG | 0.609305 | 3.2:-9768423 | None:intergenic |
| TTCACCAATCACAAAATCAA+GGG | 0.611717 | 3.2:+9762919 | MS.gene65858:CDS |
| TTTCATGAGTGAAACGAGGA+CGG | 0.612135 | 3.2:+9760629 | MS.gene65858:CDS |
| TCATATATATGAAAAGCAGG+TGG | 0.618088 | 3.2:+9770397 | MS.gene65858:CDS |
| TGGGTCATCACCATTAAGGA+TGG | 0.619769 | 3.2:-9761436 | None:intergenic |
| ACATGACGCATGATATCGGC+CGG | 0.621807 | 3.2:+9760469 | MS.gene65858:CDS |
| GAACTGCTGGAACGTTAGAG+AGG | 0.622766 | 3.2:-9761368 | None:intergenic |
| CAAGGGACTCAGAAGAGAGG+CGG | 0.623105 | 3.2:+9761322 | MS.gene65858:CDS |
| GACGGTTGGAGAAATAGAAG+AGG | 0.634976 | 3.2:+9760647 | MS.gene65858:CDS |
| ATGCGGATAAGCTTCGGGCA+TGG | 0.635152 | 3.2:-9768651 | None:intergenic |
| GAACACCGAGGTGTGCCAGA+TGG | 0.638084 | 3.2:+9768460 | MS.gene65858:CDS |
| CACATCAGAGAGTGAAAAGG+CGG | 0.639535 | 3.2:+9762640 | MS.gene65858:CDS |
| GACCTTACATGAACACTACA+CGG | 0.644746 | 3.2:+9771144 | MS.gene65858:CDS |
| ACTCGTTTCGGTACAACATG+GGG | 0.645651 | 3.2:+9762862 | MS.gene65858:CDS |
| AATTCTGCTAACCACATCCA+GGG | 0.650060 | 3.2:+9767189 | MS.gene65858:CDS |
| CATATATATGAAAAGCAGGT+GGG | 0.661105 | 3.2:+9770398 | MS.gene65858:CDS |
| GGCGGATCGGAAGAATTCAA+GGG | 0.667758 | 3.2:+9761394 | MS.gene65858:CDS |
| AGAAGCGGAAAATTGGACAG+TGG | 0.683697 | 3.2:+9760768 | MS.gene65858:CDS |
| GGACAGTGGTTTGATTAACG+AGG | 0.686336 | 3.2:+9760782 | MS.gene65858:CDS |
| TTACAAGGGACTCAGAAGAG+AGG | 0.689527 | 3.2:+9761319 | MS.gene65858:CDS |
| TTAAACCATCTGGCACACCT+CGG | 0.692377 | 3.2:-9768465 | None:intergenic |
| TATAGACGCAACTCAAAACG+TGG | 0.698081 | 3.2:-9770452 | None:intergenic |
| AAATTATCAAGAATAATATG+CGG | 0.698309 | 3.2:-9768668 | None:intergenic |
| TTGTTTAGTCAAAGCAGGTG+CGG | 0.699281 | 3.2:+9763081 | MS.gene65858:CDS |
| TGATGAGTATGCATTTGCTG+CGG | 0.732285 | 3.2:+9767153 | MS.gene65858:CDS |
| GCTGAAAGAATGAATCGTGG+TGG | 0.764437 | 3.2:+9767392 | MS.gene65858:CDS |
| AATGCTGAAAGAATGAATCG+TGG | 0.776928 | 3.2:+9767389 | MS.gene65858:CDS |
| ATCTTGGTTCATGAACACCG+AGG | 0.787086 | 3.2:+9768448 | MS.gene65858:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 9760186 | 9771184 | 9760186 | ID=MS.gene65858 |
| chr3.2 | mRNA | 9760186 | 9771184 | 9760186 | ID=MS.gene65858.t1;Parent=MS.gene65858 |
| chr3.2 | exon | 9760186 | 9760914 | 9760186 | ID=MS.gene65858.t1.exon1;Parent=MS.gene65858.t1 |
| chr3.2 | CDS | 9760186 | 9760914 | 9760186 | ID=cds.MS.gene65858.t1;Parent=MS.gene65858.t1 |
| chr3.2 | exon | 9761273 | 9761573 | 9761273 | ID=MS.gene65858.t1.exon2;Parent=MS.gene65858.t1 |
| chr3.2 | CDS | 9761273 | 9761573 | 9761273 | ID=cds.MS.gene65858.t1;Parent=MS.gene65858.t1 |
| chr3.2 | exon | 9762012 | 9763454 | 9762012 | ID=MS.gene65858.t1.exon3;Parent=MS.gene65858.t1 |
| chr3.2 | CDS | 9762012 | 9763454 | 9762012 | ID=cds.MS.gene65858.t1;Parent=MS.gene65858.t1 |
| chr3.2 | exon | 9767134 | 9767243 | 9767134 | ID=MS.gene65858.t1.exon4;Parent=MS.gene65858.t1 |
| chr3.2 | CDS | 9767134 | 9767243 | 9767134 | ID=cds.MS.gene65858.t1;Parent=MS.gene65858.t1 |
| chr3.2 | exon | 9767368 | 9767418 | 9767368 | ID=MS.gene65858.t1.exon5;Parent=MS.gene65858.t1 |
| chr3.2 | CDS | 9767368 | 9767418 | 9767368 | ID=cds.MS.gene65858.t1;Parent=MS.gene65858.t1 |
| chr3.2 | exon | 9768397 | 9768540 | 9768397 | ID=MS.gene65858.t1.exon6;Parent=MS.gene65858.t1 |
| chr3.2 | CDS | 9768397 | 9768540 | 9768397 | ID=cds.MS.gene65858.t1;Parent=MS.gene65858.t1 |
| chr3.2 | exon | 9768611 | 9768700 | 9768611 | ID=MS.gene65858.t1.exon7;Parent=MS.gene65858.t1 |
| chr3.2 | CDS | 9768611 | 9768700 | 9768611 | ID=cds.MS.gene65858.t1;Parent=MS.gene65858.t1 |
| chr3.2 | exon | 9770162 | 9770268 | 9770162 | ID=MS.gene65858.t1.exon8;Parent=MS.gene65858.t1 |
| chr3.2 | CDS | 9770162 | 9770268 | 9770162 | ID=cds.MS.gene65858.t1;Parent=MS.gene65858.t1 |
| chr3.2 | exon | 9770394 | 9770478 | 9770394 | ID=MS.gene65858.t1.exon9;Parent=MS.gene65858.t1 |
| chr3.2 | CDS | 9770394 | 9770478 | 9770394 | ID=cds.MS.gene65858.t1;Parent=MS.gene65858.t1 |
| chr3.2 | exon | 9771092 | 9771184 | 9771092 | ID=MS.gene65858.t1.exon10;Parent=MS.gene65858.t1 |
| chr3.2 | CDS | 9771092 | 9771184 | 9771092 | ID=cds.MS.gene65858.t1;Parent=MS.gene65858.t1 |
| Gene Sequence |
| Protein sequence |
