AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050963


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050963.t1 MTR_7g111960 88.469 503 58 0 1 503 1 503 0.0 920
MS.gene050963.t1 MTR_7g111980 72.311 437 102 8 1 431 1 424 0.0 593
MS.gene050963.t1 MTR_7g111980 76.023 342 80 2 91 431 1 341 0.0 520
MS.gene050963.t1 MTR_7g112000 38.166 469 265 12 37 495 20 473 3.32e-77 251
MS.gene050963.t1 MTR_6g083730 33.333 396 231 13 1 383 1 376 8.67e-48 172
MS.gene050963.t1 MTR_8g104490 33.938 386 225 12 55 424 45 416 1.45e-46 169
MS.gene050963.t1 MTR_2g011810 33.430 344 206 8 56 387 52 384 1.66e-45 169
MS.gene050963.t1 MTR_4g090970 33.721 344 205 8 56 387 51 383 4.30e-45 167
MS.gene050963.t1 MTR_8g104510 36.709 316 179 8 55 358 45 351 4.58e-45 165
MS.gene050963.t1 MTR_2g450080 33.134 335 215 6 56 385 50 380 1.20e-44 166
MS.gene050963.t1 MTR_4g128600 32.836 335 216 6 56 385 49 379 1.20e-44 166
MS.gene050963.t1 MTR_8g104490 34.366 355 209 11 80 424 11 351 4.63e-44 160
MS.gene050963.t1 MTR_4g106810 39.781 274 155 8 82 350 65 333 1.23e-43 162
MS.gene050963.t1 MTR_6g083320 34.663 326 187 9 1 314 1 312 1.90e-42 156
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050963.t1 AT5G26920 38.279 337 193 6 52 386 37 360 4.50e-65 217
MS.gene050963.t1 AT5G26920 38.279 337 193 6 52 386 37 360 4.04e-64 218
MS.gene050963.t1 AT5G26920 37.798 336 188 6 52 386 37 352 6.74e-62 212
MS.gene050963.t1 AT5G57580 36.283 339 201 8 56 385 47 379 2.48e-53 191
MS.gene050963.t1 AT4G25800 35.103 339 205 8 56 385 36 368 1.57e-49 179
MS.gene050963.t1 AT4G25800 35.103 339 205 8 56 385 36 368 1.57e-49 179
MS.gene050963.t1 AT2G24300 33.929 336 212 7 56 385 43 374 5.59e-45 167
MS.gene050963.t1 AT2G24300 33.929 336 212 7 56 385 47 378 5.81e-45 167
MS.gene050963.t1 AT2G24300 35.959 292 178 6 99 385 40 327 6.69e-44 163
MS.gene050963.t1 AT4G31000 33.136 338 208 9 56 385 47 374 7.58e-43 160
MS.gene050963.t1 AT5G62570 34.139 331 205 10 28 351 13 337 1.04e-41 153
MS.gene050963.t1 AT5G62570 34.139 331 205 10 28 351 13 337 3.18e-41 155
MS.gene050963.t1 AT5G62570 35.690 297 182 8 59 351 31 322 3.35e-41 154
MS.gene050963.t1 AT2G18750 31.940 335 217 7 56 385 53 381 7.09e-41 155
MS.gene050963.t1 AT2G18750 31.940 335 217 7 56 385 53 381 7.09e-41 155
MS.gene050963.t1 AT2G18750 31.940 335 217 7 56 385 53 381 7.09e-41 155
MS.gene050963.t1 AT1G73805 33.634 333 202 11 52 377 42 362 7.72e-41 152
MS.gene050963.t1 AT5G62570 35.125 279 173 6 28 302 13 287 2.42e-36 137
MS.gene050963.t1 AT4G31000 32.534 292 168 8 99 385 86 353 2.33e-33 133

Find 110 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGTAGACGGCCACATTTC+TGG 0.197257 7.1:-3919544 None:intergenic
TGATGTTTGCACAACAAAAT+TGG 0.211587 7.1:-3919767 None:intergenic
GACATTGTGAAAATTGTTTC+AGG 0.234773 7.1:-3917982 None:intergenic
CGAACATTCAGGACCTTAAA+AGG 0.238490 7.1:-3918369 None:intergenic
CACCATACAGGACACATAAT+TGG 0.280822 7.1:-3918104 None:intergenic
GATGTTTGCACAACAAAATT+GGG 0.319284 7.1:-3919766 None:intergenic
TTGGAAAGTCAAACTGTTGC+AGG 0.322001 7.1:-3919297 None:intergenic
TACCCTTTCCTCGAACATTC+AGG 0.328468 7.1:-3918380 None:intergenic
ATCTCCCTCAGCTTTGATTT+CGG 0.333180 7.1:-3918004 None:intergenic
AAAACACGTACGGAAATAAA+AGG 0.334232 7.1:-3917206 None:intergenic
AGAGAAGAACCGGTCAATTT+CGG 0.341595 7.1:+3918283 MS.gene050963:CDS
TTAGTTCAATCTAATTCAAT+TGG 0.354677 7.1:+3918318 MS.gene050963:CDS
CCATGTATTGTTGTATCAAT+TGG 0.354774 7.1:-3919217 None:intergenic
ATTCTCTTAGTACTAGTAGA+AGG 0.362152 7.1:-3917141 None:intergenic
CATTATTGAATGATAAAGTA+TGG 0.373290 7.1:+3918521 MS.gene050963:CDS
AGTTGTCCATTTCCAACTCT+TGG 0.375977 7.1:-3918180 None:intergenic
ATGTGTTGGCCAACTCGTTA+AGG 0.382699 7.1:-3917915 None:intergenic
TTAAAGACAAGGGAGGATAT+TGG 0.397067 7.1:-3918890 None:intergenic
CATACTTTATCATTCAATAA+TGG 0.400855 7.1:-3918520 None:intergenic
ACCTCTTCTCCAGAAAAGTA+TGG 0.401455 7.1:-3919637 None:intergenic
GCAAAACGCAAGATTGTTAC+TGG 0.404835 7.1:-3917349 None:intergenic
GTCCTGAATGTTCGAGGAAA+GGG 0.408908 7.1:+3918378 MS.gene050963:CDS
ATTCAATTGGAGCAAGCATT+CGG 0.413576 7.1:+3918331 MS.gene050963:CDS
AAAATCATTACACTAAGAAA+TGG 0.418028 7.1:+3918216 MS.gene050963:CDS
AGAGTACCTTGCTGAGCAAT+TGG 0.420158 7.1:-3919316 None:intergenic
TTCAATTGGAGCAAGCATTC+GGG 0.420187 7.1:+3918332 MS.gene050963:CDS
ATCTCACAAAGTGGACTTGT+AGG 0.422654 7.1:+3919568 MS.gene050963:CDS
ATTTCTGGTTGGCATGGAAA+TGG 0.424406 7.1:-3919529 None:intergenic
TGTGATCAAATGGCAGCCTT+AGG 0.436932 7.1:+3919601 MS.gene050963:CDS
ACAAGACTGGAGGGAAGTTA+TGG 0.438740 7.1:+3918792 MS.gene050963:CDS
TTGTAGAATAAGCACTCAAC+AGG 0.441707 7.1:-3919495 None:intergenic
CGAACGTTTACTTCGAAAAG+TGG 0.444298 7.1:+3917374 MS.gene050963:CDS
AATAGAAATACCTTGAGGTT+AGG 0.444750 7.1:-3917552 None:intergenic
ATCTCTCAATCCACATGAAA+AGG 0.445518 7.1:+3918973 MS.gene050963:CDS
GATATATCAAAGAGAAGAAC+CGG 0.455709 7.1:+3918273 MS.gene050963:CDS
CTGTCATTGGCAGTGCTTGG+TGG 0.456561 7.1:+3919144 MS.gene050963:intron
TTTAAGGTCCTGAATGTTCG+AGG 0.478176 7.1:+3918372 MS.gene050963:CDS
AGATGGAATACACACTGTTA+AGG 0.480073 7.1:+3918594 MS.gene050963:CDS
TGTGTTGGCCAACTCGTTAA+GGG 0.482570 7.1:-3917914 None:intergenic
AACCCCTAGCCGAAATTGAC+CGG 0.487536 7.1:-3918292 None:intergenic
AAGTCCACTTTGTGAGATTG+AGG 0.491640 7.1:-3919563 None:intergenic
CATTGTGATGTAGATGATGA+TGG 0.491743 7.1:+3918839 MS.gene050963:CDS
GTACCTCCAAGAGTTGGAAA+TGG 0.493683 7.1:+3918174 MS.gene050963:CDS
GAACCGGTCAATTTCGGCTA+GGG 0.497068 7.1:+3918289 MS.gene050963:CDS
TGATACAACAATACATGGTA+TGG 0.502118 7.1:+3919222 MS.gene050963:CDS
AGTGTACAAACTGCACAATA+TGG 0.502488 7.1:+3919259 MS.gene050963:CDS
TATCTGTAAACTCAATCTCT+TGG 0.507557 7.1:-3918254 None:intergenic
TGTCCATTTCCAACTCTTGG+AGG 0.507896 7.1:-3918177 None:intergenic
AGGTAGTGGTGGAGCTTATG+TGG 0.510631 7.1:-3917532 None:intergenic
TAACGAAGATTCATTAAGAA+AGG 0.512049 7.1:+3918639 MS.gene050963:CDS
CCAATTGATACAACAATACA+TGG 0.513913 7.1:+3919217 MS.gene050963:CDS
AAATTGAATGGCATCGAAGA+GGG 0.521226 7.1:+3917071 None:intergenic
GGCCACATTTCTGGTTGGCA+TGG 0.528202 7.1:-3919535 None:intergenic
CACAGGCAGTTGACATCAGA+TGG 0.542027 7.1:+3918577 MS.gene050963:CDS
TGATAAAGTATGGCGTCTGA+AGG 0.545484 7.1:+3918531 MS.gene050963:CDS
AAATAGAAAATAGACAAGAC+TGG 0.545967 7.1:+3918779 MS.gene050963:intron
TGGCGACAACATTTCTCCTA+AGG 0.548065 7.1:-3919617 None:intergenic
AAATCAGCAACGCGTAGTCA+TGG 0.550182 7.1:+3918059 MS.gene050963:CDS
GATAAAGTATGGCGTCTGAA+GGG 0.551278 7.1:+3918532 MS.gene050963:CDS
CAAATTGTACCTCCAAGAGT+TGG 0.551489 7.1:+3918168 MS.gene050963:CDS
ATCGAAGAGGGCATCTCATG+TGG 0.556518 7.1:+3917083 MS.gene050963:CDS
GTAAAGATGGTACACTTCAC+AGG 0.556690 7.1:+3918560 MS.gene050963:CDS
TCACGCAGTTCAATTTGAAG+TGG 0.561167 7.1:-3918030 None:intergenic
ATCCAATTATGTGTCCTGTA+TGG 0.561327 7.1:+3918102 MS.gene050963:CDS
TGGATTGACCCTTAACGAGT+TGG 0.565769 7.1:+3917906 MS.gene050963:CDS
ACCTTGAGGTTAGGTAGTGG+TGG 0.567120 7.1:-3917543 None:intergenic
GTTCCTTAACTAGTTGCAAG+AGG 0.567391 7.1:+3917504 MS.gene050963:intron
ATGTTTGCACAACAAAATTG+GGG 0.568691 7.1:-3919765 None:intergenic
TAAAATTGAATTAAAGACAA+GGG 0.568925 7.1:-3918900 None:intergenic
CTGGTTGGCATGGAAATGGT+AGG 0.572443 7.1:-3919525 None:intergenic
CGTACGGAAATAAAAGGTGT+TGG 0.572739 7.1:-3917200 None:intergenic
GGTCCTGAATGTTCGAGGAA+AGG 0.575080 7.1:+3918377 MS.gene050963:CDS
AACCGGTCAATTTCGGCTAG+GGG 0.578024 7.1:+3918290 MS.gene050963:CDS
AGAACCGGTCAATTTCGGCT+AGG 0.587448 7.1:+3918288 MS.gene050963:CDS
AGAAAATAGACAAGACTGGA+GGG 0.587832 7.1:+3918783 MS.gene050963:intron
TCTCCTCCTCTCATATGTGT+TGG 0.590047 7.1:-3917929 None:intergenic
CTGAAGGGGATACGTAAAGA+TGG 0.592154 7.1:+3918547 MS.gene050963:CDS
CAACGCGTAGTCATGGAAGA+AGG 0.592392 7.1:+3918066 MS.gene050963:CDS
TCTACCTCAATCTCACAAAG+TGG 0.593272 7.1:+3919559 MS.gene050963:CDS
GACTTTCCAATTGCTCAGCA+AGG 0.595283 7.1:+3919310 MS.gene050963:CDS
TGGAAAGTCAAACTGTTGCA+GGG 0.596726 7.1:-3919296 None:intergenic
ATAAAGTATGGCGTCTGAAG+GGG 0.600694 7.1:+3918533 MS.gene050963:CDS
TTCCATGCCAACCAGAAATG+TGG 0.602938 7.1:+3919533 MS.gene050963:CDS
TAGACGGCCACATTTCTGGT+TGG 0.607799 7.1:-3919540 None:intergenic
CTTTATCATTCAATAATGGA+CGG 0.610044 7.1:-3918516 None:intergenic
ATGTCCGAAATCAAAGCTGA+GGG 0.610692 7.1:+3918000 MS.gene050963:CDS
CTTTGTGAGATTGAGGTAGA+CGG 0.612126 7.1:-3919556 None:intergenic
AATTGAATTAAAGACAAGGG+AGG 0.612137 7.1:-3918897 None:intergenic
TCCACCACTACCTAACCTCA+AGG 0.613550 7.1:+3917542 MS.gene050963:CDS
GGAAATGGACAACTACTGAA+AGG 0.620282 7.1:+3918189 MS.gene050963:CDS
AATACCTTGAGGTTAGGTAG+TGG 0.621059 7.1:-3917546 None:intergenic
AATGTCCGAAATCAAAGCTG+AGG 0.622266 7.1:+3917999 MS.gene050963:CDS
ATTGTTGTATCAATTGGCAA+TGG 0.633369 7.1:-3919211 None:intergenic
TAGTTCTAGTAGTGATGACA+AGG 0.633706 7.1:+3917107 MS.gene050963:CDS
TTAAAATTGAATTAAAGACA+AGG 0.637130 7.1:-3918901 None:intergenic
AAAATTGAATGGCATCGAAG+AGG 0.644164 7.1:+3917070 None:intergenic
TACAACAATACATGGTATGG+TGG 0.645400 7.1:+3919225 MS.gene050963:CDS
AAAAGAGGATTGGACAGCTG+AGG 0.645437 7.1:+3918134 MS.gene050963:CDS
TAGAAAATAGACAAGACTGG+AGG 0.645484 7.1:+3918782 MS.gene050963:intron
ATTGTGATGTAGATGATGAT+GGG 0.651673 7.1:+3918840 MS.gene050963:CDS
TGGCCAACACATATGAGAGG+AGG 0.659498 7.1:+3917926 MS.gene050963:CDS
TCGAAGAGGGCATCTCATGT+GGG 0.661983 7.1:+3917084 MS.gene050963:CDS
GTACTAAGAGAATAAAACAT+GGG 0.665045 7.1:+3917151 MS.gene050963:CDS
ATTGGAGCAAGCATTCGGGA+AGG 0.671894 7.1:+3918336 MS.gene050963:CDS
AGTACTAAGAGAATAAAACA+TGG 0.690543 7.1:+3917150 MS.gene050963:CDS
AGTTGGCCAACACATATGAG+AGG 0.691689 7.1:+3917923 MS.gene050963:CDS
TGTTTGCACAACAAAATTGG+GGG 0.694097 7.1:-3919764 None:intergenic
AAACGCAAGATTGTTACTGG+CGG 0.706358 7.1:-3917346 None:intergenic
GTACAAACTGCACAATATGG+TGG 0.713505 7.1:+3919262 MS.gene050963:CDS
ACATAATTGGATCTTCATCG+AGG 0.760970 7.1:-3918091 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACTATTTCATATAATTTT+TGG + chr7.1:3918749-3918768 MS.gene050963:intron 10.0%
!!! ATATATACACAATTATATTT+TGG - chr7.1:3919085-3919104 None:intergenic 10.0%
!!! TAAATCAAAATTCATTTTAA+AGG - chr7.1:3917697-3917716 None:intergenic 10.0%
!!! TTTTACAAAATTTATTTTTG+TGG - chr7.1:3917747-3917766 None:intergenic 10.0%
!! AAAATAAAATAAAACACGTA+CGG - chr7.1:3917219-3917238 None:intergenic 15.0%
!! AAAATGTAAAAAAATGTACA+TGG + chr7.1:3918420-3918439 MS.gene050963:intron 15.0%
!! AAATGTAAAAAAATGTACAT+GGG + chr7.1:3918421-3918440 MS.gene050963:intron 15.0%
!! TAAAATTGAATTAAAGACAA+GGG - chr7.1:3918903-3918922 None:intergenic 15.0%
!! TTAAAATTGAATTAAAGACA+AGG - chr7.1:3918904-3918923 None:intergenic 15.0%
!!! ATTTTTTTACATTTTGTTAG+AGG - chr7.1:3918415-3918434 None:intergenic 15.0%
!!! TGTCTTTAATTCAATTTTAA+AGG + chr7.1:3918904-3918923 MS.gene050963:CDS 15.0%
!! AAAAAAATAGAAATACCTTG+AGG - chr7.1:3917560-3917579 None:intergenic 20.0%
!! AAAATCATTACACTAAGAAA+TGG + chr7.1:3918216-3918235 MS.gene050963:CDS 20.0%
!! CATACTTTATCATTCAATAA+TGG - chr7.1:3918523-3918542 None:intergenic 20.0%
!! CATTATTGAATGATAAAGTA+TGG + chr7.1:3918521-3918540 MS.gene050963:CDS 20.0%
!! TTAGTTCAATCTAATTCAAT+TGG + chr7.1:3918318-3918337 MS.gene050963:CDS 20.0%
!! TTAGTTGTTAAAAATGTAGA+TGG + chr7.1:3917596-3917615 MS.gene050963:intron 20.0%
!!! GAATTTTGATTTAATTTGAG+TGG + chr7.1:3917704-3917723 MS.gene050963:intron 20.0%
!!! TAATTCAATTTTAAAGGTTG+TGG + chr7.1:3918910-3918929 MS.gene050963:CDS 20.0%
!!! TACAAAATTTATTTTTGTGG+TGG - chr7.1:3917744-3917763 None:intergenic 20.0%
!!! TTTCATATAATTTTTGGCTT+TGG + chr7.1:3918755-3918774 MS.gene050963:intron 20.0%
! AAATAGAAAATAGACAAGAC+TGG + chr7.1:3918779-3918798 MS.gene050963:intron 25.0%
! AGTACTAAGAGAATAAAACA+TGG + chr7.1:3917150-3917169 MS.gene050963:CDS 25.0%
! ATATCCTAATTCTATCATTC+AGG + chr7.1:3919472-3919491 MS.gene050963:intron 25.0%
! GTACTAAGAGAATAAAACAT+GGG + chr7.1:3917151-3917170 MS.gene050963:CDS 25.0%
! TAACGAAGATTCATTAAGAA+AGG + chr7.1:3918639-3918658 MS.gene050963:CDS 25.0%
!! AAAGTAAGAGTATGAATGAT+TGG - chr7.1:3917408-3917427 None:intergenic 25.0%
!! CTTTATCATTCAATAATGGA+CGG - chr7.1:3918519-3918538 None:intergenic 25.0%
!! TATTTGGAGTGAACTTTATA+TGG + chr7.1:3919030-3919049 MS.gene050963:intron 25.0%
!! TTACATTTTGTTAGAGGTTT+AGG - chr7.1:3918409-3918428 None:intergenic 25.0%
!! TTCTGAATTTTGTGATCAAA+TGG + chr7.1:3919591-3919610 MS.gene050963:CDS 25.0%
AAAACACGTACGGAAATAAA+AGG - chr7.1:3917209-3917228 None:intergenic 30.0%
AATAAGAAAGGAACATGTAG+AGG - chr7.1:3917289-3917308 None:intergenic 30.0%
AATAGAAATACCTTGAGGTT+AGG - chr7.1:3917555-3917574 None:intergenic 30.0%
AATTGAATTAAAGACAAGGG+AGG - chr7.1:3918900-3918919 None:intergenic 30.0%
AGCTCTTGAAGTTATTAGTT+TGG + chr7.1:3918719-3918738 MS.gene050963:intron 30.0%
ATGTTTGCACAACAAAATTG+GGG - chr7.1:3919768-3919787 None:intergenic 30.0%
ATTCTCTTAGTACTAGTAGA+AGG - chr7.1:3917144-3917163 None:intergenic 30.0%
ATTGTGATGTAGATGATGAT+GGG + chr7.1:3918840-3918859 MS.gene050963:CDS 30.0%
ATTGTTGTATCAATTGGCAA+TGG - chr7.1:3919214-3919233 None:intergenic 30.0%
CAATCTTTGATGCTATTAAC+TGG + chr7.1:3917470-3917489 MS.gene050963:intron 30.0%
CAGTTAATAGCATCAAAGAT+TGG - chr7.1:3917472-3917491 None:intergenic 30.0%
CCAATTGATACAACAATACA+TGG + chr7.1:3919217-3919236 MS.gene050963:CDS 30.0%
CCATGTATTGTTGTATCAAT+TGG - chr7.1:3919220-3919239 None:intergenic 30.0%
GAAGTCAAGTCAAATAAGAA+AGG - chr7.1:3917301-3917320 None:intergenic 30.0%
GACATTGTGAAAATTGTTTC+AGG - chr7.1:3917985-3918004 None:intergenic 30.0%
GATATATCAAAGAGAAGAAC+CGG + chr7.1:3918273-3918292 MS.gene050963:CDS 30.0%
GATGTTTGCACAACAAAATT+GGG - chr7.1:3919769-3919788 None:intergenic 30.0%
GTATCCATTATTAGAATCCA+TGG - chr7.1:3917450-3917469 None:intergenic 30.0%
TATCTGTAAACTCAATCTCT+TGG - chr7.1:3918257-3918276 None:intergenic 30.0%
TGATACAACAATACATGGTA+TGG + chr7.1:3919222-3919241 MS.gene050963:CDS 30.0%
TGATGTTTGCACAACAAAAT+TGG - chr7.1:3919770-3919789 None:intergenic 30.0%
TTGCCTTTAGGTCTTAAATT+TGG - chr7.1:3917799-3917818 None:intergenic 30.0%
TTTCTTTGGCTGTGAATATT+TGG + chr7.1:3919014-3919033 MS.gene050963:intron 30.0%
TTTGATCATATCAGGTTAAG+AGG - chr7.1:3919118-3919137 None:intergenic 30.0%
! AAGTCTTGATTTTTGCCTTT+AGG - chr7.1:3917811-3917830 None:intergenic 30.0%
! ATATTCTGCATGAACACTTT+TGG + chr7.1:3919347-3919366 MS.gene050963:intron 30.0%
! TAGCCAAATTTAAGACCTAA+AGG + chr7.1:3917793-3917812 MS.gene050963:intron 30.0%
! TTGTGTTTCTAATTTAGCTG+TGG + chr7.1:3917886-3917905 MS.gene050963:intron 30.0%
!! TTCAATTTTAAAGGTTGTGG+AGG + chr7.1:3918913-3918932 MS.gene050963:CDS 30.0%
!! TTTAATTTGAGTGGTGAAAG+TGG + chr7.1:3917713-3917732 MS.gene050963:intron 30.0%
!!! AGAAGTGTTTTGATCATATC+AGG - chr7.1:3919126-3919145 None:intergenic 30.0%
!!! ATCTCTTTTTGTTGTTCTTC+TGG - chr7.1:3917180-3917199 None:intergenic 30.0%
ACATAATTGGATCTTCATCG+AGG - chr7.1:3918094-3918113 None:intergenic 35.0%
AGAAAATAGACAAGACTGGA+GGG + chr7.1:3918783-3918802 MS.gene050963:intron 35.0%
AGATGGAATACACACTGTTA+AGG + chr7.1:3918594-3918613 MS.gene050963:CDS 35.0%
AGTGTACAAACTGCACAATA+TGG + chr7.1:3919259-3919278 MS.gene050963:CDS 35.0%
ATCCAATTATGTGTCCTGTA+TGG + chr7.1:3918102-3918121 MS.gene050963:CDS 35.0%
ATCTCTCAATCCACATGAAA+AGG + chr7.1:3918973-3918992 MS.gene050963:CDS 35.0%
ATTCAATTGGAGCAAGCATT+CGG + chr7.1:3918331-3918350 MS.gene050963:CDS 35.0%
CATTGTGATGTAGATGATGA+TGG + chr7.1:3918839-3918858 MS.gene050963:CDS 35.0%
GATCAAAACACTTCTGTCAT+TGG + chr7.1:3919131-3919150 MS.gene050963:intron 35.0%
TACAACAATACATGGTATGG+TGG + chr7.1:3919225-3919244 MS.gene050963:CDS 35.0%
TAGAAAATAGACAAGACTGG+AGG + chr7.1:3918782-3918801 MS.gene050963:intron 35.0%
TATTCACAGCCAAAGAAAGT+AGG - chr7.1:3919012-3919031 None:intergenic 35.0%
TCATCATAAACAAAGGACAG+AGG - chr7.1:3919715-3919734 None:intergenic 35.0%
TCTATTTGGAAGTTACACGT+TGG + chr7.1:3919672-3919691 MS.gene050963:intron 35.0%
TGAAAAAGTCTGAGTTGTCT+AGG + chr7.1:3919384-3919403 MS.gene050963:intron 35.0%
TGCTCCATCATCATAAACAA+AGG - chr7.1:3919722-3919741 None:intergenic 35.0%
TGCTCCATGGATTCTAATAA+TGG + chr7.1:3917443-3917462 MS.gene050963:intron 35.0%
TGCTTGTATCCTACTTTCTT+TGG + chr7.1:3919000-3919019 MS.gene050963:intron 35.0%
TGTTTGCACAACAAAATTGG+GGG - chr7.1:3919767-3919786 None:intergenic 35.0%
TTAAAGACAAGGGAGGATAT+TGG - chr7.1:3918893-3918912 None:intergenic 35.0%
TTGTAGAATAAGCACTCAAC+AGG - chr7.1:3919498-3919517 None:intergenic 35.0%
! CTGTCCTTTGTTTATGATGA+TGG + chr7.1:3919715-3919734 MS.gene050963:intron 35.0%
! GTATGGTGACTTTGAAAAAG+AGG + chr7.1:3918119-3918138 MS.gene050963:CDS 35.0%
! GTGACTTTGAAAAAGAGGAT+TGG + chr7.1:3918124-3918143 MS.gene050963:CDS 35.0%
!! TAGTTCTAGTAGTGATGACA+AGG + chr7.1:3917107-3917126 MS.gene050963:CDS 35.0%
!! TTTGTTTATGATGATGGAGC+AGG + chr7.1:3919721-3919740 MS.gene050963:intron 35.0%
!!! CTTTTTCAAAGTCACCATAC+AGG - chr7.1:3918119-3918138 None:intergenic 35.0%
AAACGCAAGATTGTTACTGG+CGG - chr7.1:3917349-3917368 None:intergenic 40.0%
AAGTCCACTTTGTGAGATTG+AGG - chr7.1:3919566-3919585 None:intergenic 40.0%
AATACCTTGAGGTTAGGTAG+TGG - chr7.1:3917549-3917568 None:intergenic 40.0%
AATGTCCGAAATCAAAGCTG+AGG + chr7.1:3917999-3918018 MS.gene050963:CDS 40.0%
ACCTCTTCTCCAGAAAAGTA+TGG - chr7.1:3919640-3919659 None:intergenic 40.0%
AGAGAAGAACCGGTCAATTT+CGG + chr7.1:3918283-3918302 MS.gene050963:CDS 40.0%
AGTTGTCCATTTCCAACTCT+TGG - chr7.1:3918183-3918202 None:intergenic 40.0%
ATAAAGTATGGCGTCTGAAG+GGG + chr7.1:3918533-3918552 MS.gene050963:CDS 40.0%
ATGTCCGAAATCAAAGCTGA+GGG + chr7.1:3918000-3918019 MS.gene050963:CDS 40.0%
CAAATTGTACCTCCAAGAGT+TGG + chr7.1:3918168-3918187 MS.gene050963:CDS 40.0%
CACCATACAGGACACATAAT+TGG - chr7.1:3918107-3918126 None:intergenic 40.0%
CAGGCCTGAATGATAGAATT+AGG - chr7.1:3919479-3919498 None:intergenic 40.0%
CGAACATTCAGGACCTTAAA+AGG - chr7.1:3918372-3918391 None:intergenic 40.0%
CGAACGTTTACTTCGAAAAG+TGG + chr7.1:3917374-3917393 MS.gene050963:CDS 40.0%
CTTTGTGAGATTGAGGTAGA+CGG - chr7.1:3919559-3919578 None:intergenic 40.0%
GATAAAGTATGGCGTCTGAA+GGG + chr7.1:3918532-3918551 MS.gene050963:CDS 40.0%
GCAAAACGCAAGATTGTTAC+TGG - chr7.1:3917352-3917371 None:intergenic 40.0%
GGAAATGGACAACTACTGAA+AGG + chr7.1:3918189-3918208 MS.gene050963:CDS 40.0%
GTAAAGATGGTACACTTCAC+AGG + chr7.1:3918560-3918579 MS.gene050963:CDS 40.0%
GTACAAACTGCACAATATGG+TGG + chr7.1:3919262-3919281 MS.gene050963:CDS 40.0%
GTTCCTTAACTAGTTGCAAG+AGG + chr7.1:3917504-3917523 MS.gene050963:intron 40.0%
TACATGCAGATGCAGAACAT+TGG - chr7.1:3917266-3917285 None:intergenic 40.0%
TCACGCAGTTCAATTTGAAG+TGG - chr7.1:3918033-3918052 None:intergenic 40.0%
TCTACCTCAATCTCACAAAG+TGG + chr7.1:3919559-3919578 MS.gene050963:CDS 40.0%
TCTCCTCTTGCAACTAGTTA+AGG - chr7.1:3917510-3917529 None:intergenic 40.0%
TGATAAAGTATGGCGTCTGA+AGG + chr7.1:3918531-3918550 MS.gene050963:CDS 40.0%
TGGAAAGTCAAACTGTTGCA+GGG - chr7.1:3919299-3919318 None:intergenic 40.0%
TTCAATTGGAGCAAGCATTC+GGG + chr7.1:3918332-3918351 MS.gene050963:CDS 40.0%
TTGGAAAGTCAAACTGTTGC+AGG - chr7.1:3919300-3919319 None:intergenic 40.0%
! AGGTAGAAGCGAACCTTTTA+AGG + chr7.1:3918356-3918375 MS.gene050963:CDS 40.0%
! ATCTCACAAAGTGGACTTGT+AGG + chr7.1:3919568-3919587 MS.gene050963:CDS 40.0%
! ATCTCCCTCAGCTTTGATTT+CGG - chr7.1:3918007-3918026 None:intergenic 40.0%
! ATGTTGTCGCCATACTTTTC+TGG + chr7.1:3919628-3919647 MS.gene050963:CDS 40.0%
! CAAGCACAAACCTTTTCATG+TGG - chr7.1:3918986-3919005 None:intergenic 40.0%
! CGTACGGAAATAAAAGGTGT+TGG - chr7.1:3917203-3917222 None:intergenic 40.0%
! TTTAAGGTCCTGAATGTTCG+AGG + chr7.1:3918372-3918391 MS.gene050963:CDS 40.0%
!! ATTTCTGGTTGGCATGGAAA+TGG - chr7.1:3919532-3919551 None:intergenic 40.0%
!! TTTCTGGAGAAGAGGTATCA+CGG + chr7.1:3919644-3919663 MS.gene050963:intron 40.0%
AAAAGAGGATTGGACAGCTG+AGG + chr7.1:3918134-3918153 MS.gene050963:CDS 45.0%
AAATCAGCAACGCGTAGTCA+TGG + chr7.1:3918059-3918078 MS.gene050963:CDS 45.0%
ACAAGACTGGAGGGAAGTTA+TGG + chr7.1:3918792-3918811 MS.gene050963:CDS 45.0%
AGTTGGCCAACACATATGAG+AGG + chr7.1:3917923-3917942 MS.gene050963:CDS 45.0%
CTGAAGGGGATACGTAAAGA+TGG + chr7.1:3918547-3918566 MS.gene050963:CDS 45.0%
GACTTTCCAATTGCTCAGCA+AGG + chr7.1:3919310-3919329 MS.gene050963:CDS 45.0%
GTACCTCCAAGAGTTGGAAA+TGG + chr7.1:3918174-3918193 MS.gene050963:CDS 45.0%
GTCCTGAATGTTCGAGGAAA+GGG + chr7.1:3918378-3918397 MS.gene050963:CDS 45.0%
TACCCTTTCCTCGAACATTC+AGG - chr7.1:3918383-3918402 None:intergenic 45.0%
TAGGCGATGAGTCTTGAAGA+GGG + chr7.1:3919403-3919422 MS.gene050963:intron 45.0%
TCTCCTCCTCTCATATGTGT+TGG - chr7.1:3917932-3917951 None:intergenic 45.0%
TGGATTGACCCTTAACGAGT+TGG + chr7.1:3917906-3917925 MS.gene050963:CDS 45.0%
TGGCGACAACATTTCTCCTA+AGG - chr7.1:3919620-3919639 None:intergenic 45.0%
TGTCCATTTCCAACTCTTGG+AGG - chr7.1:3918180-3918199 None:intergenic 45.0%
TGTCTTTCTTGCTTGCTCCA+TGG + chr7.1:3917430-3917449 MS.gene050963:intron 45.0%
TGTGATCAAATGGCAGCCTT+AGG + chr7.1:3919601-3919620 MS.gene050963:CDS 45.0%
TTCCATGCCAACCAGAAATG+TGG + chr7.1:3919533-3919552 MS.gene050963:CDS 45.0%
! AGAGTACCTTGCTGAGCAAT+TGG - chr7.1:3919319-3919338 None:intergenic 45.0%
! ATGTGTTGGCCAACTCGTTA+AGG - chr7.1:3917918-3917937 None:intergenic 45.0%
! TGTGTTGGCCAACTCGTTAA+GGG - chr7.1:3917917-3917936 None:intergenic 45.0%
!! GCCATACTTTTCTGGAGAAG+AGG + chr7.1:3919636-3919655 MS.gene050963:CDS 45.0%
!! GTATCACGGGTTGGTCTATT+TGG + chr7.1:3919658-3919677 MS.gene050963:intron 45.0%
!! TTCTGGAGAAGAGGTATCAC+GGG + chr7.1:3919645-3919664 MS.gene050963:intron 45.0%
AACCCCTAGCCGAAATTGAC+CGG - chr7.1:3918295-3918314 None:intergenic 50.0%
AACCGGTCAATTTCGGCTAG+GGG + chr7.1:3918290-3918309 MS.gene050963:CDS 50.0%
AGAACCGGTCAATTTCGGCT+AGG + chr7.1:3918288-3918307 MS.gene050963:CDS 50.0%
ATTGGAGCAAGCATTCGGGA+AGG + chr7.1:3918336-3918355 MS.gene050963:CDS 50.0%
CAACGCGTAGTCATGGAAGA+AGG + chr7.1:3918066-3918085 MS.gene050963:CDS 50.0%
CACAGGCAGTTGACATCAGA+TGG + chr7.1:3918577-3918596 MS.gene050963:CDS 50.0%
CTAGGCGATGAGTCTTGAAG+AGG + chr7.1:3919402-3919421 MS.gene050963:intron 50.0%
CTGGTTGGCATGGAAATGGT+AGG - chr7.1:3919528-3919547 None:intergenic 50.0%
CTTCTGTCATTGGCAGTGCT+TGG + chr7.1:3919141-3919160 MS.gene050963:intron 50.0%
GAACCGGTCAATTTCGGCTA+GGG + chr7.1:3918289-3918308 MS.gene050963:CDS 50.0%
GGGGGAAGAACAATGATTGC+TGG - chr7.1:3919749-3919768 None:intergenic 50.0%
GGTCCTGAATGTTCGAGGAA+AGG + chr7.1:3918377-3918396 MS.gene050963:CDS 50.0%
TCCACCACTACCTAACCTCA+AGG + chr7.1:3917542-3917561 MS.gene050963:CDS 50.0%
TGGCCAACACATATGAGAGG+AGG + chr7.1:3917926-3917945 MS.gene050963:CDS 50.0%
! ACCTTGAGGTTAGGTAGTGG+TGG - chr7.1:3917546-3917565 None:intergenic 50.0%
! AGGTAGTGGTGGAGCTTATG+TGG - chr7.1:3917535-3917554 None:intergenic 50.0%
!! ATCGAAGAGGGCATCTCATG+TGG + chr7.1:3917083-3917102 MS.gene050963:CDS 50.0%
!! TAGACGGCCACATTTCTGGT+TGG - chr7.1:3919543-3919562 None:intergenic 50.0%
!! TCGAAGAGGGCATCTCATGT+GGG + chr7.1:3917084-3917103 MS.gene050963:CDS 50.0%
CTGTCATTGGCAGTGCTTGG+TGG + chr7.1:3919144-3919163 MS.gene050963:intron 55.0%
GAGGTAGACGGCCACATTTC+TGG - chr7.1:3919547-3919566 None:intergenic 55.0%
!! GGAGAAGAGGTATCACGGGT+TGG + chr7.1:3919649-3919668 MS.gene050963:intron 55.0%
!! GGCCACATTTCTGGTTGGCA+TGG - chr7.1:3919538-3919557 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 3917078 3919799 3917078 ID=MS.gene050963
chr7.1 mRNA 3917078 3919799 3917078 ID=MS.gene050963.t1;Parent=MS.gene050963
chr7.1 exon 3917078 3917217 3917078 ID=MS.gene050963.t1.exon1;Parent=MS.gene050963.t1
chr7.1 CDS 3917078 3917217 3917078 ID=cds.MS.gene050963.t1;Parent=MS.gene050963.t1
chr7.1 exon 3917335 3917395 3917335 ID=MS.gene050963.t1.exon2;Parent=MS.gene050963.t1
chr7.1 CDS 3917335 3917395 3917335 ID=cds.MS.gene050963.t1;Parent=MS.gene050963.t1
chr7.1 exon 3917517 3917563 3917517 ID=MS.gene050963.t1.exon3;Parent=MS.gene050963.t1
chr7.1 CDS 3917517 3917563 3917517 ID=cds.MS.gene050963.t1;Parent=MS.gene050963.t1
chr7.1 exon 3917903 3918399 3917903 ID=MS.gene050963.t1.exon4;Parent=MS.gene050963.t1
chr7.1 CDS 3917903 3918399 3917903 ID=cds.MS.gene050963.t1;Parent=MS.gene050963.t1
chr7.1 exon 3918500 3918660 3918500 ID=MS.gene050963.t1.exon5;Parent=MS.gene050963.t1
chr7.1 CDS 3918500 3918660 3918500 ID=cds.MS.gene050963.t1;Parent=MS.gene050963.t1
chr7.1 exon 3918785 3918994 3918785 ID=MS.gene050963.t1.exon6;Parent=MS.gene050963.t1
chr7.1 CDS 3918785 3918994 3918785 ID=cds.MS.gene050963.t1;Parent=MS.gene050963.t1
chr7.1 exon 3919157 3919331 3919157 ID=MS.gene050963.t1.exon7;Parent=MS.gene050963.t1
chr7.1 CDS 3919157 3919331 3919157 ID=cds.MS.gene050963.t1;Parent=MS.gene050963.t1
chr7.1 exon 3919494 3919657 3919494 ID=MS.gene050963.t1.exon8;Parent=MS.gene050963.t1
chr7.1 CDS 3919494 3919657 3919494 ID=cds.MS.gene050963.t1;Parent=MS.gene050963.t1
chr7.1 exon 3919743 3919799 3919743 ID=MS.gene050963.t1.exon9;Parent=MS.gene050963.t1
chr7.1 CDS 3919743 3919799 3919743 ID=cds.MS.gene050963.t1;Parent=MS.gene050963.t1
Gene Sequence

>MS.gene050963

ATGGCATCGAAGAGGGCATCTCATGTGGGTAGTTCTAGTAGTGATGACAAGGATCTTCATGTTCCTTCTACTAGTACTAAGAGAATAAAACATGGGAATCCAGAAGAACAACAAAAAGAGATCCAACACCTTTTATTTCCGTACGTGTTTTATTTTATTTTTATTTGATGTAAATATAATATAATCCAATGTTCTGCATCTGCATGTACCTCTACATGTTCCTTTCTTATTTGACTTGACTTCTTCTATTTGTGCAGCACTAATAGCGCCGCCAGTAACAATCTTGCGTTTTGCTTCGAACGTTTACTTCGAAAAGTGGTAAAATATCCAATCATTCATACTCTTACTTTATTGTCTTTCTTGCTTGCTCCATGGATTCTAATAATGGATACCAATCTTTGATGCTATTAACTGGTGTTTTGTTTTGTTCCTTAACTAGTTGCAAGAGGAGATTCCACATAAGCTCCACCACTACCTAACCTCAAGGTATTTCTATTTTTTTATGCAACTTTTGCATTTTAGTTGTTAAAAATGTAGATGGTATCTTTTGAAGTAATTATGTACTATGTCACATTGATTTTGAAATCTTTACATTCTTTTAGTAAAATTGTTTTTACCTTTAAAATGAATTTTGATTTAATTTGAGTGGTGAAAGTGGATATGCCACCACAAAAATAAATTTTGTAAAAATGAATTTAATTAAAATTGAATTGAATAGCCAAATTTAAGACCTAAAGGCAAAAATCAAGACTTCAAATTTAAGTTAGAATAAATTTGAAGAAGCAAAATCAATTGTATTGATAGTTGTTTGTGTTTCTAATTTAGCTGTGGATTGACCCTTAACGAGTTGGCCAACACATATGAGAGGAGGAGACGTTTGCAATTGTGTTTCATGAACAAATTGCCTGAAACAATTTTCACAATGTCCGAAATCAAAGCTGAGGGAGATGAACCACTTCAAATTGAACTGCGTGATGCTGAAAATCAGCAACGCGTAGTCATGGAAGAAGGTTCCTCGATGAAGATCCAATTATGTGTCCTGTATGGTGACTTTGAAAAAGAGGATTGGACAGCTGAGGAATTTAATACTCAAATTGTACCTCCAAGAGTTGGAAATGGACAACTACTGAAAGGAAATAAAATCATTACACTAAGAAATGGAGTTGCTGATATCAACCAAGAGATTGAGTTTACAGATATATCAAAGAGAAGAACCGGTCAATTTCGGCTAGGGGTTAAATTAGTTCAATCTAATTCAATTGGAGCAAGCATTCGGGAAGGTAGAAGCGAACCTTTTAAGGTCCTGAATGTTCGAGGAAAGGGTAATTCCTAAACCTCTAACAAAATGTAAAAAAATGTACATGGGATCTCTTGACTTTGATTTTTGCATTTTTCATGTGTTTTGACTTTTGATCATTTCAGCTTACAAGAAACACGACCGTCCATTATTGAATGATAAAGTATGGCGTCTGAAGGGGATACGTAAAGATGGTACACTTCACAGGCAGTTGACATCAGATGGAATACACACTGTTAAGGATTTTTTGCAGTTGTTGACAACTAACGAAGATTCATTAAGAAAGGTAAGAAAATATACTGTTGTTTGAAATATTATTGTGTTGAATAATGATTTTCTACTTTAGCTCTTGAAGTTATTAGTTTGGTTGTTTGATACTATTTCATATAATTTTTGGCTTTGGAAAATAGAAAATAGACAAGACTGGAGGGAAGTTATGGAAGAAAATTATTGCACATGCTAAACATTGTGATGTAGATGATGATGGGTGCTACATCTATTATGTAACAGAACAACCAATATCCTCCCTTGTCTTTAATTCAATTTTAAAGGTTGTGGAGGTGACTTTTCATAATCAACAAAACTCTCGTTCTATACAATCTCTCAATCCACATGAAAAGGTTTGTGCTTGTATCCTACTTTCTTTGGCTGTGAATATTTGGAGTGAACTTTATATGGATTCTTAAATTAAAGTGATCTATATCTTACCAAAATATAATTGTGTATATATAGTACGAGTACCTCTTAACCTGATATGATCAAAACACTTCTGTCATTGGCAGTGCTTGGTGGAAGAAGTTAAGCAGCATGCTTACAAAAATTTGATTGATCTAAAACCATTGCCAATTGATACAACAATACATGGTATGGTGGAGACATCAGCAAGTGTACAAACTGCACAATATGGTGGTCAAGATCAAGCCCTGCAACAGTTTGACTTTCCAATTGCTCAGCAAGGTACTCTATATACTTATATTCTGCATGAACACTTTTGGATGCATTTCAAAACTGAAAAAGTCTGAGTTGTCTAGGCGATGAGTCTTGAAGAGGGTATATAACTATGTTTCAAAACTTTTTATTTTCACTTTTTGTTGCTGATATCCTAATTCTATCATTCAGGCCTGTTGAGTGCTTATTCTACAAGCTTTGACCTACCATTTCCATGCCAACCAGAAATGTGGCCGTCTACCTCAATCTCACAAAGTGGACTTGTAGGTTCTGAATTTTGTGATCAAATGGCAGCCTTAGGAGAAATGTTGTCGCCATACTTTTCTGGAGAAGAGGTATCACGGGTTGGTCTATTTGGAAGTTACACGTTGGAACAAGTAAATGCAAATCCTCTGTCCTTTGTTTATGATGATGGAGCAGGATCCAGCAATCATTGTTCTTCCCCCAATTTTGTTGTGCAAACATCAAGCAAATTGA

Protein sequence

>MS.gene050963.t1

MASKRASHVGSSSSDDKDLHVPSTSTKRIKHGNPEEQQKEIQHLLFPTNSAASNNLAFCFERLLRKVLQEEIPHKLHHYLTSSCGLTLNELANTYERRRRLQLCFMNKLPETIFTMSEIKAEGDEPLQIELRDAENQQRVVMEEGSSMKIQLCVLYGDFEKEDWTAEEFNTQIVPPRVGNGQLLKGNKIITLRNGVADINQEIEFTDISKRRTGQFRLGVKLVQSNSIGASIREGRSEPFKVLNVRGKAYKKHDRPLLNDKVWRLKGIRKDGTLHRQLTSDGIHTVKDFLQLLTTNEDSLRKKIDKTGGKLWKKIIAHAKHCDVDDDGCYIYYVTEQPISSLVFNSILKVVEVTFHNQQNSRSIQSLNPHEKCLVEEVKQHAYKNLIDLKPLPIDTTIHGMVETSASVQTAQYGGQDQALQQFDFPIAQQGLLSAYSTSFDLPFPCQPEMWPSTSISQSGLVGSEFCDQMAALGEMLSPYFSGEEDPAIIVLPPILLCKHQAN