Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050760.t1 | XP_013450446.1 | 91.1 | 485 | 43 | 0 | 1 | 485 | 1 | 485 | 1.90E-253 | 884.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050760.t1 | F4K2R6 | 38.3 | 337 | 193 | 6 | 52 | 386 | 37 | 360 | 2.6e-54 | 214.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050760.t1 | A0A072U410 | 91.1 | 485 | 43 | 0 | 1 | 485 | 1 | 485 | 1.4e-253 | 884.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050759 | MS.gene050760 | 0.809711 | 1.65E-50 | -1.69E-46 |
| MS.gene050760 | MS.gene050962 | 0.800953 | 1.13E-48 | -1.69E-46 |
| MS.gene050760 | MS.gene050963 | 0.998345 | 1.92E-262 | -1.69E-46 |
| MS.gene050760 | MS.gene066255 | 0.83384 | 4.23E-56 | -1.69E-46 |
| MS.gene050760 | MS.gene072561 | 0.805566 | 1.25E-49 | -1.69E-46 |
| MS.gene050760 | MS.gene55718 | 0.801094 | 1.06E-48 | -1.69E-46 |
| MS.gene050760 | MS.gene56290 | 0.810978 | 8.81E-51 | -1.69E-46 |
| MS.gene050760 | MS.gene57336 | 0.800542 | 1.37E-48 | -1.69E-46 |
| MS.gene050760 | MS.gene65858 | 0.811097 | 8.30E-51 | -1.69E-46 |
| MS.gene050760 | MS.gene66729 | 0.805245 | 1.47E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050760.t1 | MTR_7g111960 | 88.469 | 503 | 58 | 0 | 1 | 503 | 1 | 503 | 0.0 | 920 |
| MS.gene050760.t1 | MTR_7g111980 | 72.311 | 437 | 102 | 8 | 1 | 431 | 1 | 424 | 0.0 | 593 |
| MS.gene050760.t1 | MTR_7g111980 | 76.023 | 342 | 80 | 2 | 91 | 431 | 1 | 341 | 0.0 | 520 |
| MS.gene050760.t1 | MTR_7g112000 | 38.166 | 469 | 265 | 12 | 37 | 495 | 20 | 473 | 3.32e-77 | 251 |
| MS.gene050760.t1 | MTR_6g083730 | 33.333 | 396 | 231 | 13 | 1 | 383 | 1 | 376 | 8.67e-48 | 172 |
| MS.gene050760.t1 | MTR_8g104490 | 33.938 | 386 | 225 | 12 | 55 | 424 | 45 | 416 | 1.45e-46 | 169 |
| MS.gene050760.t1 | MTR_2g011810 | 33.430 | 344 | 206 | 8 | 56 | 387 | 52 | 384 | 1.66e-45 | 169 |
| MS.gene050760.t1 | MTR_4g090970 | 33.721 | 344 | 205 | 8 | 56 | 387 | 51 | 383 | 4.30e-45 | 167 |
| MS.gene050760.t1 | MTR_8g104510 | 36.709 | 316 | 179 | 8 | 55 | 358 | 45 | 351 | 4.58e-45 | 165 |
| MS.gene050760.t1 | MTR_2g450080 | 33.134 | 335 | 215 | 6 | 56 | 385 | 50 | 380 | 1.20e-44 | 166 |
| MS.gene050760.t1 | MTR_4g128600 | 32.836 | 335 | 216 | 6 | 56 | 385 | 49 | 379 | 1.20e-44 | 166 |
| MS.gene050760.t1 | MTR_8g104490 | 34.366 | 355 | 209 | 11 | 80 | 424 | 11 | 351 | 4.63e-44 | 160 |
| MS.gene050760.t1 | MTR_4g106810 | 39.781 | 274 | 155 | 8 | 82 | 350 | 65 | 333 | 1.23e-43 | 162 |
| MS.gene050760.t1 | MTR_6g083320 | 34.663 | 326 | 187 | 9 | 1 | 314 | 1 | 312 | 1.90e-42 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050760.t1 | AT5G26920 | 38.279 | 337 | 193 | 6 | 52 | 386 | 37 | 360 | 4.50e-65 | 217 |
| MS.gene050760.t1 | AT5G26920 | 38.279 | 337 | 193 | 6 | 52 | 386 | 37 | 360 | 4.04e-64 | 218 |
| MS.gene050760.t1 | AT5G26920 | 37.798 | 336 | 188 | 6 | 52 | 386 | 37 | 352 | 6.74e-62 | 212 |
| MS.gene050760.t1 | AT5G57580 | 36.283 | 339 | 201 | 8 | 56 | 385 | 47 | 379 | 2.48e-53 | 191 |
| MS.gene050760.t1 | AT4G25800 | 35.103 | 339 | 205 | 8 | 56 | 385 | 36 | 368 | 1.57e-49 | 179 |
| MS.gene050760.t1 | AT4G25800 | 35.103 | 339 | 205 | 8 | 56 | 385 | 36 | 368 | 1.57e-49 | 179 |
| MS.gene050760.t1 | AT2G24300 | 33.929 | 336 | 212 | 7 | 56 | 385 | 43 | 374 | 5.59e-45 | 167 |
| MS.gene050760.t1 | AT2G24300 | 33.929 | 336 | 212 | 7 | 56 | 385 | 47 | 378 | 5.81e-45 | 167 |
| MS.gene050760.t1 | AT2G24300 | 35.959 | 292 | 178 | 6 | 99 | 385 | 40 | 327 | 6.69e-44 | 163 |
| MS.gene050760.t1 | AT4G31000 | 33.136 | 338 | 208 | 9 | 56 | 385 | 47 | 374 | 7.58e-43 | 160 |
| MS.gene050760.t1 | AT5G62570 | 34.139 | 331 | 205 | 10 | 28 | 351 | 13 | 337 | 1.04e-41 | 153 |
| MS.gene050760.t1 | AT5G62570 | 34.139 | 331 | 205 | 10 | 28 | 351 | 13 | 337 | 3.18e-41 | 155 |
| MS.gene050760.t1 | AT5G62570 | 35.690 | 297 | 182 | 8 | 59 | 351 | 31 | 322 | 3.35e-41 | 154 |
| MS.gene050760.t1 | AT2G18750 | 31.940 | 335 | 217 | 7 | 56 | 385 | 53 | 381 | 7.09e-41 | 155 |
| MS.gene050760.t1 | AT2G18750 | 31.940 | 335 | 217 | 7 | 56 | 385 | 53 | 381 | 7.09e-41 | 155 |
| MS.gene050760.t1 | AT2G18750 | 31.940 | 335 | 217 | 7 | 56 | 385 | 53 | 381 | 7.09e-41 | 155 |
| MS.gene050760.t1 | AT1G73805 | 33.634 | 333 | 202 | 11 | 52 | 377 | 42 | 362 | 7.72e-41 | 152 |
| MS.gene050760.t1 | AT5G62570 | 35.125 | 279 | 173 | 6 | 28 | 302 | 13 | 287 | 2.42e-36 | 137 |
| MS.gene050760.t1 | AT4G31000 | 32.534 | 292 | 168 | 8 | 99 | 385 | 86 | 353 | 2.33e-33 | 133 |
Find 0 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACTATTTCATATAATTTT+TGG | + | 51761:48231-48250 | MS.gene050760:intron | 10.0% |
| !!! | ATATATACACAATTATATTT+TGG | - | 51761:48567-48586 | None:intergenic | 10.0% |
| !!! | TAAATCAAAATTCATTTTAA+AGG | - | 51761:47179-47198 | None:intergenic | 10.0% |
| !!! | TTTTACAAAATTTATTTTTG+TGG | - | 51761:47229-47248 | None:intergenic | 10.0% |
| !! | AAAATAAAATAAAACACGTA+CGG | - | 51761:46701-46720 | None:intergenic | 15.0% |
| !! | AAAATGTAAAAAAATGTACA+TGG | + | 51761:47902-47921 | MS.gene050760:intron | 15.0% |
| !! | AAATGTAAAAAAATGTACAT+GGG | + | 51761:47903-47922 | MS.gene050760:intron | 15.0% |
| !! | TAAAATTGAATTAAAGACAA+GGG | - | 51761:48385-48404 | None:intergenic | 15.0% |
| !! | TTAAAATTGAATTAAAGACA+AGG | - | 51761:48386-48405 | None:intergenic | 15.0% |
| !!! | ATTTTTTTACATTTTGTTAG+AGG | - | 51761:47897-47916 | None:intergenic | 15.0% |
| !!! | TGTCTTTAATTCAATTTTAA+AGG | + | 51761:48386-48405 | MS.gene050760:CDS | 15.0% |
| !! | AAAAAAATAGAAATACCTTG+AGG | - | 51761:47042-47061 | None:intergenic | 20.0% |
| !! | AAAATCATTACACTAAGAAA+TGG | + | 51761:47698-47717 | MS.gene050760:CDS | 20.0% |
| !! | CATACTTTATCATTCAATAA+TGG | - | 51761:48005-48024 | None:intergenic | 20.0% |
| !! | CATTATTGAATGATAAAGTA+TGG | + | 51761:48003-48022 | MS.gene050760:CDS | 20.0% |
| !! | TTAGTTCAATCTAATTCAAT+TGG | + | 51761:47800-47819 | MS.gene050760:CDS | 20.0% |
| !! | TTAGTTGTTAAAAATGTAGA+TGG | + | 51761:47078-47097 | MS.gene050760:intron | 20.0% |
| !!! | GAATTTTGATTTAATTTGAG+TGG | + | 51761:47186-47205 | MS.gene050760:intron | 20.0% |
| !!! | TAATTCAATTTTAAAGGTTG+TGG | + | 51761:48392-48411 | MS.gene050760:CDS | 20.0% |
| !!! | TACAAAATTTATTTTTGTGG+TGG | - | 51761:47226-47245 | None:intergenic | 20.0% |
| !!! | TTTCATATAATTTTTGGCTT+TGG | + | 51761:48237-48256 | MS.gene050760:intron | 20.0% |
| ! | AAATAGAAAATAGACAAGAC+TGG | + | 51761:48261-48280 | MS.gene050760:intron | 25.0% |
| ! | AGTACTAAGAGAATAAAACA+TGG | + | 51761:46632-46651 | MS.gene050760:CDS | 25.0% |
| ! | ATATCCTAATTCTATCATTC+AGG | + | 51761:48954-48973 | MS.gene050760:intron | 25.0% |
| ! | GTACTAAGAGAATAAAACAT+GGG | + | 51761:46633-46652 | MS.gene050760:CDS | 25.0% |
| ! | TAACGAAGATTCATTAAGAA+AGG | + | 51761:48121-48140 | MS.gene050760:CDS | 25.0% |
| !! | AAAGTAAGAGTATGAATGAT+TGG | - | 51761:46890-46909 | None:intergenic | 25.0% |
| !! | CTTTATCATTCAATAATGGA+CGG | - | 51761:48001-48020 | None:intergenic | 25.0% |
| !! | TATTTGGAGTGAACTTTATA+TGG | + | 51761:48512-48531 | MS.gene050760:intron | 25.0% |
| !! | TTACATTTTGTTAGAGGTTT+AGG | - | 51761:47891-47910 | None:intergenic | 25.0% |
| !! | TTCTGAATTTTGTGATCAAA+TGG | + | 51761:49073-49092 | MS.gene050760:CDS | 25.0% |
| AAAACACGTACGGAAATAAA+AGG | - | 51761:46691-46710 | None:intergenic | 30.0% | |
| AATAAGAAAGGAACATGTAG+AGG | - | 51761:46771-46790 | None:intergenic | 30.0% | |
| AATAGAAATACCTTGAGGTT+AGG | - | 51761:47037-47056 | None:intergenic | 30.0% | |
| AATTGAATTAAAGACAAGGG+AGG | - | 51761:48382-48401 | None:intergenic | 30.0% | |
| AGCTCTTGAAGTTATTAGTT+TGG | + | 51761:48201-48220 | MS.gene050760:intron | 30.0% | |
| ATGTTTGCACAACAAAATTG+GGG | - | 51761:49250-49269 | None:intergenic | 30.0% | |
| ATTCTCTTAGTACTAGTAGA+AGG | - | 51761:46626-46645 | None:intergenic | 30.0% | |
| ATTGTGATGTAGATGATGAT+GGG | + | 51761:48322-48341 | MS.gene050760:CDS | 30.0% | |
| ATTGTTGTATCAATTGGCAA+TGG | - | 51761:48696-48715 | None:intergenic | 30.0% | |
| CAATCTTTGATGCTATTAAC+TGG | + | 51761:46952-46971 | MS.gene050760:intron | 30.0% | |
| CAGTTAATAGCATCAAAGAT+TGG | - | 51761:46954-46973 | None:intergenic | 30.0% | |
| CCAATTGATACAACAATACA+TGG | + | 51761:48699-48718 | MS.gene050760:CDS | 30.0% | |
| CCATGTATTGTTGTATCAAT+TGG | - | 51761:48702-48721 | None:intergenic | 30.0% | |
| GAAGTCAAGTCAAATAAGAA+AGG | - | 51761:46783-46802 | None:intergenic | 30.0% | |
| GACATTGTGAAAATTGTTTC+AGG | - | 51761:47467-47486 | None:intergenic | 30.0% | |
| GATATATCAAAGAGAAGAAC+CGG | + | 51761:47755-47774 | MS.gene050760:CDS | 30.0% | |
| GATGTTTGCACAACAAAATT+GGG | - | 51761:49251-49270 | None:intergenic | 30.0% | |
| GTATCCATTATTAGAATCCA+TGG | - | 51761:46932-46951 | None:intergenic | 30.0% | |
| TATCTGTAAACTCAATCTCT+TGG | - | 51761:47739-47758 | None:intergenic | 30.0% | |
| TGATACAACAATACATGGTA+TGG | + | 51761:48704-48723 | MS.gene050760:CDS | 30.0% | |
| TGATGTTTGCACAACAAAAT+TGG | - | 51761:49252-49271 | None:intergenic | 30.0% | |
| TTGCCTTTAGGTCTTAAATT+TGG | - | 51761:47281-47300 | None:intergenic | 30.0% | |
| TTTCTTTGGCTGTGAATATT+TGG | + | 51761:48496-48515 | MS.gene050760:intron | 30.0% | |
| TTTGATCATATCAGGTTAAG+AGG | - | 51761:48600-48619 | None:intergenic | 30.0% | |
| ! | AAGTCTTGATTTTTGCCTTT+AGG | - | 51761:47293-47312 | None:intergenic | 30.0% |
| ! | ATATTCTGCATGAACACTTT+TGG | + | 51761:48829-48848 | MS.gene050760:intron | 30.0% |
| ! | TAGCCAAATTTAAGACCTAA+AGG | + | 51761:47275-47294 | MS.gene050760:intron | 30.0% |
| ! | TTGTGTTTCTAATTTAGCTG+TGG | + | 51761:47368-47387 | MS.gene050760:intron | 30.0% |
| !! | TTCAATTTTAAAGGTTGTGG+AGG | + | 51761:48395-48414 | MS.gene050760:CDS | 30.0% |
| !! | TTTAATTTGAGTGGTGAAAG+TGG | + | 51761:47195-47214 | MS.gene050760:intron | 30.0% |
| !!! | AGAAGTGTTTTGATCATATC+AGG | - | 51761:48608-48627 | None:intergenic | 30.0% |
| !!! | ATCTCTTTTTGTTGTTCTTC+TGG | - | 51761:46662-46681 | None:intergenic | 30.0% |
| ACATAATTGGATCTTCATCG+AGG | - | 51761:47576-47595 | None:intergenic | 35.0% | |
| AGAAAATAGACAAGACTGGA+GGG | + | 51761:48265-48284 | MS.gene050760:intron | 35.0% | |
| AGATGGAATACACACTGTTA+AGG | + | 51761:48076-48095 | MS.gene050760:CDS | 35.0% | |
| AGTGTACAAACTGCACAATA+TGG | + | 51761:48741-48760 | MS.gene050760:CDS | 35.0% | |
| ATCCAATTATGTGTCCTGTA+TGG | + | 51761:47584-47603 | MS.gene050760:CDS | 35.0% | |
| ATCTCTCAATCCACATGAAA+AGG | + | 51761:48455-48474 | MS.gene050760:CDS | 35.0% | |
| ATTCAATTGGAGCAAGCATT+CGG | + | 51761:47813-47832 | MS.gene050760:CDS | 35.0% | |
| CATTGTGATGTAGATGATGA+TGG | + | 51761:48321-48340 | MS.gene050760:CDS | 35.0% | |
| GATCAAAACACTTCTGTCAT+TGG | + | 51761:48613-48632 | MS.gene050760:intron | 35.0% | |
| TACAACAATACATGGTATGG+TGG | + | 51761:48707-48726 | MS.gene050760:CDS | 35.0% | |
| TAGAAAATAGACAAGACTGG+AGG | + | 51761:48264-48283 | MS.gene050760:intron | 35.0% | |
| TATTCACAGCCAAAGAAAGT+AGG | - | 51761:48494-48513 | None:intergenic | 35.0% | |
| TCATCATAAACAAAGGACAG+AGG | - | 51761:49197-49216 | None:intergenic | 35.0% | |
| TCTATTTGGAAGTTACACGT+TGG | + | 51761:49154-49173 | MS.gene050760:intron | 35.0% | |
| TGAAAAAGTCTGAGTTGTCT+AGG | + | 51761:48866-48885 | MS.gene050760:intron | 35.0% | |
| TGCTCCATCATCATAAACAA+AGG | - | 51761:49204-49223 | None:intergenic | 35.0% | |
| TGCTCCATGGATTCTAATAA+TGG | + | 51761:46925-46944 | MS.gene050760:intron | 35.0% | |
| TGCTTGTATCCTACTTTCTT+TGG | + | 51761:48482-48501 | MS.gene050760:intron | 35.0% | |
| TGTTTGCACAACAAAATTGG+GGG | - | 51761:49249-49268 | None:intergenic | 35.0% | |
| TTAAAGACAAGGGAGGATAT+TGG | - | 51761:48375-48394 | None:intergenic | 35.0% | |
| TTGTAGAATAAGCACTCAAC+AGG | - | 51761:48980-48999 | None:intergenic | 35.0% | |
| ! | CTGTCCTTTGTTTATGATGA+TGG | + | 51761:49197-49216 | MS.gene050760:intron | 35.0% |
| ! | GTATGGTGACTTTGAAAAAG+AGG | + | 51761:47601-47620 | MS.gene050760:CDS | 35.0% |
| ! | GTGACTTTGAAAAAGAGGAT+TGG | + | 51761:47606-47625 | MS.gene050760:CDS | 35.0% |
| !! | TAGTTCTAGTAGTGATGACA+AGG | + | 51761:46589-46608 | MS.gene050760:CDS | 35.0% |
| !! | TTTGTTTATGATGATGGAGC+AGG | + | 51761:49203-49222 | MS.gene050760:intron | 35.0% |
| !!! | CTTTTTCAAAGTCACCATAC+AGG | - | 51761:47601-47620 | None:intergenic | 35.0% |
| AAACGCAAGATTGTTACTGG+CGG | - | 51761:46831-46850 | None:intergenic | 40.0% | |
| AAGTCCACTTTGTGAGATTG+AGG | - | 51761:49048-49067 | None:intergenic | 40.0% | |
| AATACCTTGAGGTTAGGTAG+TGG | - | 51761:47031-47050 | None:intergenic | 40.0% | |
| AATGTCCGAAATCAAAGCTG+AGG | + | 51761:47481-47500 | MS.gene050760:CDS | 40.0% | |
| ACCTCTTCTCCAGAAAAGTA+TGG | - | 51761:49122-49141 | None:intergenic | 40.0% | |
| AGAGAAGAACCGGTCAATTT+CGG | + | 51761:47765-47784 | MS.gene050760:CDS | 40.0% | |
| AGTTGTCCATTTCCAACTCT+TGG | - | 51761:47665-47684 | None:intergenic | 40.0% | |
| ATAAAGTATGGCGTCTGAAG+GGG | + | 51761:48015-48034 | MS.gene050760:CDS | 40.0% | |
| ATGTCCGAAATCAAAGCTGA+GGG | + | 51761:47482-47501 | MS.gene050760:CDS | 40.0% | |
| CAAATTGTACCTCCAAGAGT+TGG | + | 51761:47650-47669 | MS.gene050760:CDS | 40.0% | |
| CACCATACAGGACACATAAT+TGG | - | 51761:47589-47608 | None:intergenic | 40.0% | |
| CAGGCCTGAATGATAGAATT+AGG | - | 51761:48961-48980 | None:intergenic | 40.0% | |
| CGAACATTCAGGACCTTAAA+AGG | - | 51761:47854-47873 | None:intergenic | 40.0% | |
| CGAACGTTTACTTCGAAAAG+TGG | + | 51761:46856-46875 | MS.gene050760:CDS | 40.0% | |
| CTTTGTGAGATTGAGGTAGA+CGG | - | 51761:49041-49060 | None:intergenic | 40.0% | |
| GATAAAGTATGGCGTCTGAA+GGG | + | 51761:48014-48033 | MS.gene050760:CDS | 40.0% | |
| GCAAAACGCAAGATTGTTAC+TGG | - | 51761:46834-46853 | None:intergenic | 40.0% | |
| GGAAATGGACAACTACTGAA+AGG | + | 51761:47671-47690 | MS.gene050760:CDS | 40.0% | |
| GTAAAGATGGTACACTTCAC+AGG | + | 51761:48042-48061 | MS.gene050760:CDS | 40.0% | |
| GTACAAACTGCACAATATGG+TGG | + | 51761:48744-48763 | MS.gene050760:CDS | 40.0% | |
| GTTCCTTAACTAGTTGCAAG+AGG | + | 51761:46986-47005 | MS.gene050760:intron | 40.0% | |
| TACATGCAGATGCAGAACAT+TGG | - | 51761:46748-46767 | None:intergenic | 40.0% | |
| TCACGCAGTTCAATTTGAAG+TGG | - | 51761:47515-47534 | None:intergenic | 40.0% | |
| TCTACCTCAATCTCACAAAG+TGG | + | 51761:49041-49060 | MS.gene050760:CDS | 40.0% | |
| TCTCCTCTTGCAACTAGTTA+AGG | - | 51761:46992-47011 | None:intergenic | 40.0% | |
| TGATAAAGTATGGCGTCTGA+AGG | + | 51761:48013-48032 | MS.gene050760:CDS | 40.0% | |
| TGGAAAGTCAAACTGTTGCA+GGG | - | 51761:48781-48800 | None:intergenic | 40.0% | |
| TTCAATTGGAGCAAGCATTC+GGG | + | 51761:47814-47833 | MS.gene050760:CDS | 40.0% | |
| TTGGAAAGTCAAACTGTTGC+AGG | - | 51761:48782-48801 | None:intergenic | 40.0% | |
| ! | AGGTAGAAGCGAACCTTTTA+AGG | + | 51761:47838-47857 | MS.gene050760:CDS | 40.0% |
| ! | ATCTCACAAAGTGGACTTGT+AGG | + | 51761:49050-49069 | MS.gene050760:CDS | 40.0% |
| ! | ATCTCCCTCAGCTTTGATTT+CGG | - | 51761:47489-47508 | None:intergenic | 40.0% |
| ! | ATGTTGTCGCCATACTTTTC+TGG | + | 51761:49110-49129 | MS.gene050760:CDS | 40.0% |
| ! | CAAGCACAAACCTTTTCATG+TGG | - | 51761:48468-48487 | None:intergenic | 40.0% |
| ! | CGTACGGAAATAAAAGGTGT+TGG | - | 51761:46685-46704 | None:intergenic | 40.0% |
| ! | TTTAAGGTCCTGAATGTTCG+AGG | + | 51761:47854-47873 | MS.gene050760:CDS | 40.0% |
| !! | ATTTCTGGTTGGCATGGAAA+TGG | - | 51761:49014-49033 | None:intergenic | 40.0% |
| !! | TTTCTGGAGAAGAGGTATCA+CGG | + | 51761:49126-49145 | MS.gene050760:intron | 40.0% |
| AAAAGAGGATTGGACAGCTG+AGG | + | 51761:47616-47635 | MS.gene050760:CDS | 45.0% | |
| AAATCAGCAACGCGTAGTCA+TGG | + | 51761:47541-47560 | MS.gene050760:CDS | 45.0% | |
| ACAAGACTGGAGGGAAGTTA+TGG | + | 51761:48274-48293 | MS.gene050760:CDS | 45.0% | |
| AGTTGGCCAACACATATGAG+AGG | + | 51761:47405-47424 | MS.gene050760:CDS | 45.0% | |
| CTGAAGGGGATACGTAAAGA+TGG | + | 51761:48029-48048 | MS.gene050760:CDS | 45.0% | |
| GACTTTCCAATTGCTCAGCA+AGG | + | 51761:48792-48811 | MS.gene050760:CDS | 45.0% | |
| GTACCTCCAAGAGTTGGAAA+TGG | + | 51761:47656-47675 | MS.gene050760:CDS | 45.0% | |
| GTCCTGAATGTTCGAGGAAA+GGG | + | 51761:47860-47879 | MS.gene050760:CDS | 45.0% | |
| TACCCTTTCCTCGAACATTC+AGG | - | 51761:47865-47884 | None:intergenic | 45.0% | |
| TAGGCGATGAGTCTTGAAGA+GGG | + | 51761:48885-48904 | MS.gene050760:intron | 45.0% | |
| TCTCCTCCTCTCATATGTGT+TGG | - | 51761:47414-47433 | None:intergenic | 45.0% | |
| TGGATTGACCCTTAACGAGT+TGG | + | 51761:47388-47407 | MS.gene050760:CDS | 45.0% | |
| TGGCGACAACATTTCTCCTA+AGG | - | 51761:49102-49121 | None:intergenic | 45.0% | |
| TGTCCATTTCCAACTCTTGG+AGG | - | 51761:47662-47681 | None:intergenic | 45.0% | |
| TGTCTTTCTTGCTTGCTCCA+TGG | + | 51761:46912-46931 | MS.gene050760:intron | 45.0% | |
| TGTGATCAAATGGCAGCCTT+AGG | + | 51761:49083-49102 | MS.gene050760:CDS | 45.0% | |
| TTCCATGCCAACCAGAAATG+TGG | + | 51761:49015-49034 | MS.gene050760:CDS | 45.0% | |
| ! | AGAGTACCTTGCTGAGCAAT+TGG | - | 51761:48801-48820 | None:intergenic | 45.0% |
| ! | ATGTGTTGGCCAACTCGTTA+AGG | - | 51761:47400-47419 | None:intergenic | 45.0% |
| ! | TGTGTTGGCCAACTCGTTAA+GGG | - | 51761:47399-47418 | None:intergenic | 45.0% |
| !! | GCCATACTTTTCTGGAGAAG+AGG | + | 51761:49118-49137 | MS.gene050760:CDS | 45.0% |
| !! | GTATCACGGGTTGGTCTATT+TGG | + | 51761:49140-49159 | MS.gene050760:intron | 45.0% |
| !! | TTCTGGAGAAGAGGTATCAC+GGG | + | 51761:49127-49146 | MS.gene050760:intron | 45.0% |
| AACCCCTAGCCGAAATTGAC+CGG | - | 51761:47777-47796 | None:intergenic | 50.0% | |
| AACCGGTCAATTTCGGCTAG+GGG | + | 51761:47772-47791 | MS.gene050760:CDS | 50.0% | |
| AGAACCGGTCAATTTCGGCT+AGG | + | 51761:47770-47789 | MS.gene050760:CDS | 50.0% | |
| ATTGGAGCAAGCATTCGGGA+AGG | + | 51761:47818-47837 | MS.gene050760:CDS | 50.0% | |
| CAACGCGTAGTCATGGAAGA+AGG | + | 51761:47548-47567 | MS.gene050760:CDS | 50.0% | |
| CACAGGCAGTTGACATCAGA+TGG | + | 51761:48059-48078 | MS.gene050760:CDS | 50.0% | |
| CTAGGCGATGAGTCTTGAAG+AGG | + | 51761:48884-48903 | MS.gene050760:intron | 50.0% | |
| CTGGTTGGCATGGAAATGGT+AGG | - | 51761:49010-49029 | None:intergenic | 50.0% | |
| CTTCTGTCATTGGCAGTGCT+TGG | + | 51761:48623-48642 | MS.gene050760:intron | 50.0% | |
| GAACCGGTCAATTTCGGCTA+GGG | + | 51761:47771-47790 | MS.gene050760:CDS | 50.0% | |
| GGGGGAAGAACAATGATTGC+TGG | - | 51761:49231-49250 | None:intergenic | 50.0% | |
| GGTCCTGAATGTTCGAGGAA+AGG | + | 51761:47859-47878 | MS.gene050760:CDS | 50.0% | |
| TCCACCACTACCTAACCTCA+AGG | + | 51761:47024-47043 | MS.gene050760:CDS | 50.0% | |
| TGGCCAACACATATGAGAGG+AGG | + | 51761:47408-47427 | MS.gene050760:CDS | 50.0% | |
| ! | ACCTTGAGGTTAGGTAGTGG+TGG | - | 51761:47028-47047 | None:intergenic | 50.0% |
| ! | AGGTAGTGGTGGAGCTTATG+TGG | - | 51761:47017-47036 | None:intergenic | 50.0% |
| !! | ATCGAAGAGGGCATCTCATG+TGG | + | 51761:46565-46584 | MS.gene050760:CDS | 50.0% |
| !! | TAGACGGCCACATTTCTGGT+TGG | - | 51761:49025-49044 | None:intergenic | 50.0% |
| !! | TCGAAGAGGGCATCTCATGT+GGG | + | 51761:46566-46585 | MS.gene050760:CDS | 50.0% |
| CTGTCATTGGCAGTGCTTGG+TGG | + | 51761:48626-48645 | MS.gene050760:intron | 55.0% | |
| GAGGTAGACGGCCACATTTC+TGG | - | 51761:49029-49048 | None:intergenic | 55.0% | |
| !! | GGAGAAGAGGTATCACGGGT+TGG | + | 51761:49131-49150 | MS.gene050760:intron | 55.0% |
| !! | GGCCACATTTCTGGTTGGCA+TGG | - | 51761:49020-49039 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51761 | gene | 46560 | 49281 | 46560 | ID=MS.gene050760 |
| 51761 | mRNA | 46560 | 49281 | 46560 | ID=MS.gene050760.t1;Parent=MS.gene050760 |
| 51761 | exon | 46560 | 46699 | 46560 | ID=MS.gene050760.t1.exon1;Parent=MS.gene050760.t1 |
| 51761 | CDS | 46560 | 46699 | 46560 | ID=cds.MS.gene050760.t1;Parent=MS.gene050760.t1 |
| 51761 | exon | 46817 | 46877 | 46817 | ID=MS.gene050760.t1.exon2;Parent=MS.gene050760.t1 |
| 51761 | CDS | 46817 | 46877 | 46817 | ID=cds.MS.gene050760.t1;Parent=MS.gene050760.t1 |
| 51761 | exon | 46999 | 47045 | 46999 | ID=MS.gene050760.t1.exon3;Parent=MS.gene050760.t1 |
| 51761 | CDS | 46999 | 47045 | 46999 | ID=cds.MS.gene050760.t1;Parent=MS.gene050760.t1 |
| 51761 | exon | 47385 | 47881 | 47385 | ID=MS.gene050760.t1.exon4;Parent=MS.gene050760.t1 |
| 51761 | CDS | 47385 | 47881 | 47385 | ID=cds.MS.gene050760.t1;Parent=MS.gene050760.t1 |
| 51761 | exon | 47982 | 48142 | 47982 | ID=MS.gene050760.t1.exon5;Parent=MS.gene050760.t1 |
| 51761 | CDS | 47982 | 48142 | 47982 | ID=cds.MS.gene050760.t1;Parent=MS.gene050760.t1 |
| 51761 | exon | 48267 | 48476 | 48267 | ID=MS.gene050760.t1.exon6;Parent=MS.gene050760.t1 |
| 51761 | CDS | 48267 | 48476 | 48267 | ID=cds.MS.gene050760.t1;Parent=MS.gene050760.t1 |
| 51761 | exon | 48639 | 48813 | 48639 | ID=MS.gene050760.t1.exon7;Parent=MS.gene050760.t1 |
| 51761 | CDS | 48639 | 48813 | 48639 | ID=cds.MS.gene050760.t1;Parent=MS.gene050760.t1 |
| 51761 | exon | 48976 | 49139 | 48976 | ID=MS.gene050760.t1.exon8;Parent=MS.gene050760.t1 |
| 51761 | CDS | 48976 | 49139 | 48976 | ID=cds.MS.gene050760.t1;Parent=MS.gene050760.t1 |
| 51761 | exon | 49225 | 49281 | 49225 | ID=MS.gene050760.t1.exon9;Parent=MS.gene050760.t1 |
| 51761 | CDS | 49225 | 49281 | 49225 | ID=cds.MS.gene050760.t1;Parent=MS.gene050760.t1 |
| Gene Sequence |
| Protein sequence |
