AlfalfaGEDB | MS.gene66107

M. sativa cultivar XinJiangDaYe / MS.gene66107

KEGG: K16241
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66107.t1	XP_003622910.1	96.5	171	6	0	1	171	1	171	2.70E-82	314.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66107.t1	Q8W191	64.5	107	30	1	63	169	51	149	6.7e-26	118.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66107.t1	G7L172	96.5	171	6	0	1	171	1	171	1.9e-82	314.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene66107.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049805	MS.gene66107	0.808543	2.94E-50	-1.69E-46
MS.gene050323	MS.gene66107	0.814161	1.77E-51	-1.69E-46
MS.gene050868	MS.gene66107	0.803602	3.22E-49	-1.69E-46
MS.gene050871	MS.gene66107	0.801579	8.43E-49	-1.69E-46
MS.gene051874	MS.gene66107	0.818461	1.94E-52	-1.69E-46
MS.gene052506	MS.gene66107	0.801896	7.25E-49	-1.69E-46
MS.gene052820	MS.gene66107	0.807367	5.23E-50	-1.69E-46
MS.gene052822	MS.gene66107	0.802772	4.79E-49	-1.69E-46
MS.gene053824	MS.gene66107	0.842985	1.85E-58	-1.69E-46
MS.gene053916	MS.gene66107	0.816084	6.63E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66107.t1	MTR_7g057160	96.491	171	6	0	1	171	1	171	2.92e-122	342
MS.gene66107.t1	MTR_3g436010	50.000	132	60	1	40	171	193	318	2.13e-33	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66107.t1	AT3G17609	59.701	134	41	3	39	167	22	147	3.08e-44	143
MS.gene66107.t1	AT3G17609	60.800	125	36	3	48	167	2	118	2.82e-41	135
MS.gene66107.t1	AT3G17609	74.444	90	22	1	79	167	44	133	5.32e-40	132
MS.gene66107.t1	AT3G17609	74.444	90	22	1	79	167	43	132	5.82e-40	132
MS.gene66107.t1	AT5G11260	48.175	137	54	3	31	161	26	151	3.29e-33	116
MS.gene66107.t1	AT5G11260	48.120	133	52	3	31	157	26	147	1.61e-30	109

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Find 43 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGATGAGAGCAATGA+AGG	0.515891	7.4:-45530938	MS.gene66107:CDS
AAATAGGTTGCTAAGGAATA+GGG	0.428080	7.4:-45531242	MS.gene66107:intron
AAGTTACAAATAGGTTGCTA+AGG	0.547782	7.4:-45531249	MS.gene66107:intron
AATCTATGTGGAGGCATAGG+AGG	0.514631	7.4:+45533648	None:intergenic
AATTCCAGACGATAGCGATG+AGG	0.702259	7.4:-45532422	MS.gene66107:intron
ACCGATGCTCAACTTCAAGC+AGG	0.560214	7.4:-45532304	MS.gene66107:CDS
AGCCAATGATACTGAGATGA+AGG	0.496590	7.4:-45533724	MS.gene66107:CDS
AGGAACATAGACGTCTCAAA+AGG	0.535376	7.4:-45532240	MS.gene66107:intron
ATCTATGTGGAGGCATAGGA+GGG	0.596628	7.4:+45533649	None:intergenic
ATGAAGGAAGCTGCAACAAC+AGG	0.454848	7.4:-45533708	MS.gene66107:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGGTTGCTAAGGAATA+GGG	-	chr7.4:45533430-45533449	MS.gene66107:intron	30.0%
AACATTATCGTGTAAGATGT+TGG	+	chr7.4:45531993-45532012	None:intergenic	30.0%
AAGTTACAAATAGGTTGCTA+AGG	-	chr7.4:45533423-45533442	MS.gene66107:intron	30.0%
AATCTAGATCCATAAACTGA+AGG	-	chr7.4:45531655-45531674	MS.gene66107:intron	30.0%
AATCTTGTAAGTTTGGACTT+TGG	+	chr7.4:45531223-45531242	None:intergenic	30.0%
ATATATCAATCACGTGAATG+TGG	+	chr7.4:45531546-45531565	None:intergenic	30.0%
ATCATTAGATCAAGATCGAA+TGG	-	chr7.4:45531571-45531590	MS.gene66107:intron	30.0%
ATTCTGAGTACATTAACATG+TGG	+	chr7.4:45531736-45531755	None:intergenic	30.0%
CATCAATAAACTGAAAGAGA+GGG	+	chr7.4:45532766-45532785	None:intergenic	30.0%
GAAAAAAGCCTTCTTTATAG+AGG	+	chr7.4:45532597-45532616	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	45530934	45533760	45530934	ID=MS.gene66107
chr7.4	mRNA	45530934	45533760	45530934	ID=MS.gene66107.t1;Parent=MS.gene66107
chr7.4	exon	45533646	45533760	45533646	ID=MS.gene66107.t1.exon1;Parent=MS.gene66107.t1
chr7.4	CDS	45533646	45533760	45533646	ID=cds.MS.gene66107.t1;Parent=MS.gene66107.t1
chr7.4	exon	45532241	45532436	45532241	ID=MS.gene66107.t1.exon2;Parent=MS.gene66107.t1
chr7.4	CDS	45532241	45532436	45532241	ID=cds.MS.gene66107.t1;Parent=MS.gene66107.t1
chr7.4	exon	45531102	45531258	45531102	ID=MS.gene66107.t1.exon3;Parent=MS.gene66107.t1
chr7.4	CDS	45531102	45531258	45531102	ID=cds.MS.gene66107.t1;Parent=MS.gene66107.t1
chr7.4	exon	45530934	45530981	45530934	ID=MS.gene66107.t1.exon4;Parent=MS.gene66107.t1
chr7.4	CDS	45530934	45530981	45530934	ID=cds.MS.gene66107.t1;Parent=MS.gene66107.t1

Gene Sequence

>MS.gene66107

ATGTCTCTTTCAAGAGCCAATGATACTGAGATGAAGGAAGCTGCAACAACAGGAGCACCTTCATCTTCATCTTCTTCATGGAATAGGCTCCCTCCTATGCCTCCACATAGATTTGGTAAGTGTCATTTTCATTATTTTTTTATTATTTTATTTTATGCTTAAGTTTTTTTGACTCATATTTTATCCTCAAGTTAAGGTCTTTTATTTTATTTTATTTTCTTTTTTTGACATAATCCTAAGTCAAGAGTCTATCGATATTTTATTAAAAAAAATATGATAAACTAATCCAAAGTCCAAACTTACAAGATTCTACATAAAGTTTGTCGAAACAAAAAATATTAAGTATATTGTTGGATTCCGATCATTTAAAAACAACTTGTTTCATGAAAAGTAGACGTATAACGTAAGTTGGTCCATATTAAGGGGCCCTTATAATATTCACACAATCTATTAAATTCGTCTAACATTCTACCCGTTAAATATTTATTTAACAATTATACTTTCATTGCATCATTCTTCTTAGATATGATTGAATGTATGTATAAACCGTTTTTACACCAACAATTTGACAAATTTAAATCATGCACAATATCATATCAGATAGTTTATCCACATTCACGTGATTGATATATAGATAATCATTAGATCAAGATCGAATGGTCTAGATTTCAAACTTATTTTAGTTTAAAAAATACATTGAATTTTGGAGCTCCAAGCCTCCAATCTAGATCCATAAACTGAAGGTGTGAATGCACGAGATTGTAGACCGTATAGTACAATTCAATTTTGGCTAAAGTTACCACATGTTAATGTACTCAGAATATAAAAATTTGTCTTAAAATTCGTGCTTCACCTTTTTAAAAATCAAAGTATTGTTTTTATCAATGCAAAATTCTTACTTTTAGGTTCTTTAACATTGCTTCTTCATTCTCATATTACTTGACACAGCTGATTCTGACACATATATCAATGCATATTTTTTATCTTTTATCTTTAATTCTCTATTAGAAAAAATTATGAAAATTTAATATTTTAAAAATACTCATCGAGACGAATCCAACATCTTACACGATAATGTTTATCTTTGTATATTACTAGAAAAATACGGTCAAAGTATGTTAAGTCAATATTATACATTGTCAACTAGGTCATCTATTGTGGGACGGAGGGTAGTACACAAGTCACTTGTTATGACCCTTCAAATTTTAATTTGACATTGTATGCCAATTCAATTTAGTCCATATTAAACGTGACATGTTTTGTTTTGACAATACTAAATATGTGATGTTAATAAGTCATGATTTTTTTTTTTTACAAATTCCAGACGATAGCGATGAGGATCTATTCGAAGTTCCGGATGTGGAAGGTACACAATGTCAAAGCGTCCATTCTGAAGTAACAAATCAAAATAGTAACCACAATCAAAGCAATGTAACCGATGCTCAACTTCAAGCAGGCTTCCCCGGAAAGCGCCGCCGCGGAAGAAACCCTGCAGACAAGGAACATAGACGTCTCAAAAGGTAAGGGACATAAGTTAACACAAATTTTAGCTATGCGTTACACCTTATAGTCACTATTATAAACAAAAAATTACTTTTTAATTTCATTGAATAACTGATGTTGCATTTGATATATAATATAGACTGTTGTAAAAATTTGTCCTCTATAAAGAAGGCTTTTTTCGAGCCCTACTTTTTGTTCTTTTTGTTTATGCGATGTATCATAAGCATAATAATTCTTTTTTTTTTGAATTGGGGAGAGATGGCTGAGTGGACTAAAGCGGCGGATTGCTAATCCGTTGTACGAATTTTTGTACCGAGGGTTCGAATCCCTCTCTTTCAGTTTATTGATGATTTGGTATTTTTTTCTTTTGAAATTATGGAGTTTCTTTTTTTTTTCTTTGTTTAATTTTTTTTACTAGTTAAAGATGCAAAATAGATAAAAAAAACAAAAAATATTTCAAATTCCAGCACAAATAAGCAAAGCAAAAAAGATTTTCTTATTCTTCACGTCCAGGATTACGTCCTGGATCATTAGATAGGAATCCGAAGATGAAAAGAGAAACAAAGAATATCACTATCGTGTAAACAAATAGTTTTAGAGTAAGCATTACAAAATCTCCAAGATAATTAAAAAAAAACGCCAGAGAAAGAGAATAGATTCTCTTCTATTTCATAAGCTTAACTCAGTTGGTATGGACAATGCATAAAATATGCAAGGTCCGGGGTTCGAACCCCGCCCACCACAAAAAAAAAAAGACTGTTGTACTAATTTGTACATTAAATTATCATACATGTCACATTAAGAAGATTTTGATACATATTACAATTAAAATGTTATTCAAGAGTAATTAAGTTATTGAACTCATACGGTTACTGAACGTCAGTGAAAGATGAATCATTCAGGATACTTGATCAAAACAATTTTAATCTAACTTTACTTATTTTTCCGCCCTTTAGATTAAACCATCTGAAACTAATAAATGACTTAAGTTACAAATAGGTTGCTAAGGAATAGGGTCTCGGCCCAACAAGCCCGTGAAAGAAAAAAAGTGTACGTGAATGACTTAGAATCAAGAGCTAAAGAGTTTGAAGATAAGAACTCCAATTTAGAAGAACGTATCTCAACTTTGACCAATGAGAACGCCATGCTCCGAAAGGTAACATAATCTGAACTAAATATGTTTTAACAAATTGTTTGTCACTTACTATTTACTATAGAATTATATAACATCATGTTGATCAAATGGAAATTTATTCGATGGTATTTACTTGTACAGGTTCTTATGAACACTAGACCCAAAGTTGATGAGAGCAATGAAGGTTAG

Protein sequence

>MS.gene66107.t1

MSLSRANDTEMKEAATTGAPSSSSSSWNRLPPMPPHRFDDSDEDLFEVPDVEGTQCQSVHSEVTNQNSNHNQSNVTDAQLQAGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKEFEDKNSNLEERISTLTNENAMLRKVLMNTRPKVDESNEG