Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66107.t1 | XP_003622910.1 | 96.5 | 171 | 6 | 0 | 1 | 171 | 1 | 171 | 2.70E-82 | 314.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66107.t1 | Q8W191 | 64.5 | 107 | 30 | 1 | 63 | 169 | 51 | 149 | 6.7e-26 | 118.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66107.t1 | G7L172 | 96.5 | 171 | 6 | 0 | 1 | 171 | 1 | 171 | 1.9e-82 | 314.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene66107.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049805 | MS.gene66107 | 0.808543 | 2.94E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene66107 | 0.814161 | 1.77E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene66107 | 0.803602 | 3.22E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene66107 | 0.801579 | 8.43E-49 | -1.69E-46 |
| MS.gene051874 | MS.gene66107 | 0.818461 | 1.94E-52 | -1.69E-46 |
| MS.gene052506 | MS.gene66107 | 0.801896 | 7.25E-49 | -1.69E-46 |
| MS.gene052820 | MS.gene66107 | 0.807367 | 5.23E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene66107 | 0.802772 | 4.79E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene66107 | 0.842985 | 1.85E-58 | -1.69E-46 |
| MS.gene053916 | MS.gene66107 | 0.816084 | 6.63E-52 | -1.69E-46 |
| MS.gene05494 | MS.gene66107 | 0.808657 | 2.78E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene66107 | 0.808701 | 2.72E-50 | -1.69E-46 |
| MS.gene055224 | MS.gene66107 | 0.84123 | 5.39E-58 | -1.69E-46 |
| MS.gene055941 | MS.gene66107 | 0.809951 | 1.47E-50 | -1.69E-46 |
| MS.gene057086 | MS.gene66107 | 0.800438 | 1.44E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66107.t1 | MTR_7g057160 | 96.491 | 171 | 6 | 0 | 1 | 171 | 1 | 171 | 2.92e-122 | 342 |
| MS.gene66107.t1 | MTR_3g436010 | 50.000 | 132 | 60 | 1 | 40 | 171 | 193 | 318 | 2.13e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66107.t1 | AT3G17609 | 59.701 | 134 | 41 | 3 | 39 | 167 | 22 | 147 | 3.08e-44 | 143 |
| MS.gene66107.t1 | AT3G17609 | 60.800 | 125 | 36 | 3 | 48 | 167 | 2 | 118 | 2.82e-41 | 135 |
| MS.gene66107.t1 | AT3G17609 | 74.444 | 90 | 22 | 1 | 79 | 167 | 44 | 133 | 5.32e-40 | 132 |
| MS.gene66107.t1 | AT3G17609 | 74.444 | 90 | 22 | 1 | 79 | 167 | 43 | 132 | 5.82e-40 | 132 |
| MS.gene66107.t1 | AT5G11260 | 48.175 | 137 | 54 | 3 | 31 | 161 | 26 | 151 | 3.29e-33 | 116 |
| MS.gene66107.t1 | AT5G11260 | 48.120 | 133 | 52 | 3 | 31 | 157 | 26 | 147 | 1.61e-30 | 109 |
Find 43 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGATACGTTCTTCTAAAT+TGG | 0.194375 | 7.4:+45531135 | None:intergenic |
| CTTCCGCGGCGGCGCTTTCC+GGG | 0.194545 | 7.4:+45532277 | None:intergenic |
| TCTTCCGCGGCGGCGCTTTC+CGG | 0.201428 | 7.4:+45532276 | None:intergenic |
| CTTCATCTTCATCTTCTTCA+TGG | 0.209387 | 7.4:-45533680 | MS.gene66107:CDS |
| CAAATAGGTTGCTAAGGAAT+AGG | 0.306771 | 7.4:-45531243 | MS.gene66107:intron |
| CTTCATCTTCTTCATGGAAT+AGG | 0.316122 | 7.4:-45533674 | MS.gene66107:CDS |
| TCATTGCTCTCATCAACTTT+GGG | 0.320674 | 7.4:+45530941 | None:intergenic |
| TTCATTGCTCTCATCAACTT+TGG | 0.343653 | 7.4:+45530940 | None:intergenic |
| TTCCTTCATCTCAGTATCAT+TGG | 0.395557 | 7.4:+45533722 | None:intergenic |
| TCGGAGCATGGCGTTCTCAT+TGG | 0.400151 | 7.4:+45531105 | None:intergenic |
| CGTCTATGTTCCTTGTCTGC+AGG | 0.409298 | 7.4:+45532250 | None:intergenic |
| CCTATGCCTCCACATAGATT+TGG | 0.410410 | 7.4:-45533645 | MS.gene66107:intron |
| TGAGGATCTATTCGAAGTTC+CGG | 0.426856 | 7.4:-45532404 | MS.gene66107:CDS |
| AAATAGGTTGCTAAGGAATA+GGG | 0.428080 | 7.4:-45531242 | MS.gene66107:intron |
| TTTGATTTGTTACTTCAGAA+TGG | 0.443413 | 7.4:+45532353 | None:intergenic |
| CAACTTCAAGCAGGCTTCCC+CGG | 0.450494 | 7.4:-45532295 | MS.gene66107:CDS |
| ATGAAGGAAGCTGCAACAAC+AGG | 0.454848 | 7.4:-45533708 | MS.gene66107:CDS |
| CATTGTGTACCTTCCACATC+CGG | 0.461620 | 7.4:+45532385 | None:intergenic |
| GTCTATGTTCCTTGTCTGCA+GGG | 0.478530 | 7.4:+45532251 | None:intergenic |
| CGGTTACATTGCTTTGATTG+TGG | 0.481791 | 7.4:+45532323 | None:intergenic |
| CGGAAGAAACCCTGCAGACA+AGG | 0.489993 | 7.4:-45532260 | MS.gene66107:CDS |
| AGCCAATGATACTGAGATGA+AGG | 0.496590 | 7.4:-45533724 | MS.gene66107:CDS |
| AATCTATGTGGAGGCATAGG+AGG | 0.514631 | 7.4:+45533648 | None:intergenic |
| AAAGTTGATGAGAGCAATGA+AGG | 0.515891 | 7.4:-45530938 | MS.gene66107:CDS |
| TTATGTTACCTTTCGGAGCA+TGG | 0.517776 | 7.4:+45531093 | None:intergenic |
| TCTATTCGAAGTTCCGGATG+TGG | 0.524672 | 7.4:-45532398 | MS.gene66107:CDS |
| CCAAATCTATGTGGAGGCAT+AGG | 0.526031 | 7.4:+45533645 | None:intergenic |
| AGGAACATAGACGTCTCAAA+AGG | 0.535376 | 7.4:-45532240 | MS.gene66107:intron |
| TTCCGCGGCGGCGCTTTCCG+GGG | 0.546365 | 7.4:+45532278 | None:intergenic |
| AAGTTACAAATAGGTTGCTA+AGG | 0.547782 | 7.4:-45531249 | MS.gene66107:intron |
| CATGAAGAAGATGAAGATGA+AGG | 0.548208 | 7.4:+45533681 | None:intergenic |
| ACCGATGCTCAACTTCAAGC+AGG | 0.560214 | 7.4:-45532304 | MS.gene66107:CDS |
| GTTGCTAAGGAATAGGGTCT+CGG | 0.571634 | 7.4:-45531236 | MS.gene66107:CDS |
| GCCTGCTTGAAGTTGAGCAT+CGG | 0.588947 | 7.4:+45532303 | None:intergenic |
| ATCTATGTGGAGGCATAGGA+GGG | 0.596628 | 7.4:+45533649 | None:intergenic |
| TTCCCCGGAAAGCGCCGCCG+CGG | 0.613620 | 7.4:-45532280 | MS.gene66107:CDS |
| TGAGAACGCCATGCTCCGAA+AGG | 0.615500 | 7.4:-45531101 | MS.gene66107:intron |
| TTCGAAGTTCCGGATGTGGA+AGG | 0.622485 | 7.4:-45532394 | MS.gene66107:CDS |
| CACTTACCAAATCTATGTGG+AGG | 0.634191 | 7.4:+45533639 | None:intergenic |
| CTGCAGGGTTTCTTCCGCGG+CGG | 0.634938 | 7.4:+45532266 | None:intergenic |
| TGACACTTACCAAATCTATG+TGG | 0.640404 | 7.4:+45533636 | None:intergenic |
| TGTCTGCAGGGTTTCTTCCG+CGG | 0.679636 | 7.4:+45532263 | None:intergenic |
| AATTCCAGACGATAGCGATG+AGG | 0.702259 | 7.4:-45532422 | MS.gene66107:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATTAAGTATATTGT+TGG | - | chr7.4:45531265-45531284 | MS.gene66107:intron | 10.0% |
| !! | TTGTTAAATAAATATTTAAC+GGG | + | chr7.4:45531408-45531427 | None:intergenic | 10.0% |
| !!! | AATTCTTTTTTTTTTGAATT+GGG | - | chr7.4:45532667-45532686 | MS.gene66107:intron | 10.0% |
| !!! | ATTTTTTTCTTTTGAAATTA+TGG | - | chr7.4:45532793-45532812 | MS.gene66107:intron | 10.0% |
| !!! | TAATTCTTTTTTTTTTGAAT+TGG | - | chr7.4:45532666-45532685 | MS.gene66107:intron | 10.0% |
| !!! | TTAAAAAATACATTGAATTT+TGG | - | chr7.4:45531618-45531637 | MS.gene66107:intron | 10.0% |
| !! | AATGTCAAATTAAAATTTGA+AGG | + | chr7.4:45532132-45532151 | None:intergenic | 15.0% |
| !! | ATGTCAAATTAAAATTTGAA+GGG | + | chr7.4:45532131-45532150 | None:intergenic | 15.0% |
| !! | ATTTAAATTTGTCAAATTGT+TGG | + | chr7.4:45531494-45531513 | None:intergenic | 15.0% |
| !! | TGTATATTACTAGAAAAATA+CGG | - | chr7.4:45532019-45532038 | MS.gene66107:intron | 15.0% |
| !!! | ATTCTTTTTTTTTTGAATTG+GGG | - | chr7.4:45532668-45532687 | MS.gene66107:intron | 15.0% |
| !!! | CAATACTTTGATTTTTAAAA+AGG | + | chr7.4:45531789-45531808 | None:intergenic | 15.0% |
| !! | AAACAAAAAGAACAAAAAGT+AGG | + | chr7.4:45532624-45532643 | None:intergenic | 20.0% |
| !! | AAATGACTTAAGTTACAAAT+AGG | - | chr7.4:45533414-45533433 | MS.gene66107:intron | 20.0% |
| !! | AACAAAAAGAACAAAAAGTA+GGG | + | chr7.4:45532623-45532642 | None:intergenic | 20.0% |
| !! | AATATTATACATTGTCAACT+AGG | - | chr7.4:45532059-45532078 | MS.gene66107:intron | 20.0% |
| !! | AGATTGTGTGAATATTATAA+GGG | + | chr7.4:45531363-45531382 | None:intergenic | 20.0% |
| !! | ATTAAGTTATTGAACTCATA+CGG | - | chr7.4:45533283-45533302 | MS.gene66107:intron | 20.0% |
| !! | CAAAATTGAATTGTACTATA+CGG | + | chr7.4:45531703-45531722 | None:intergenic | 20.0% |
| !! | TAGATTGTGTGAATATTATA+AGG | + | chr7.4:45531364-45531383 | None:intergenic | 20.0% |
| !! | TGTTTATAATAGTGACTATA+AGG | + | chr7.4:45532499-45532518 | None:intergenic | 20.0% |
| !!! | AATGCAAAATTCTTACTTTT+AGG | - | chr7.4:45531817-45531836 | MS.gene66107:intron | 20.0% |
| !!! | ACAAGTTGTTTTTAAATGAT+CGG | + | chr7.4:45531294-45531313 | None:intergenic | 20.0% |
| !!! | GCGTTTTTTTTTAATTATCT+TGG | + | chr7.4:45533057-45533076 | None:intergenic | 20.0% |
| !!! | TAATATGGACTAAATTGAAT+TGG | + | chr7.4:45532160-45532179 | None:intergenic | 20.0% |
| ! | AAAACATGTCACGTTTAATA+TGG | + | chr7.4:45532175-45532194 | None:intergenic | 25.0% |
| ! | AAATTTGTCCTCTATAAAGA+AGG | - | chr7.4:45532586-45532605 | MS.gene66107:intron | 25.0% |
| ! | ATAACATCATGTTGATCAAA+TGG | - | chr7.4:45533660-45533679 | MS.gene66107:CDS | 25.0% |
| ! | TATGTAGAATCTTGTAAGTT+TGG | + | chr7.4:45531230-45531249 | None:intergenic | 25.0% |
| ! | TCAAATGGAAATTTATTCGA+TGG | - | chr7.4:45533675-45533694 | MS.gene66107:CDS | 25.0% |
| ! | TCAAATTGTTGGTGTAAAAA+CGG | + | chr7.4:45531483-45531502 | None:intergenic | 25.0% |
| ! | TTCAGATGGTTTAATCTAAA+GGG | + | chr7.4:45533388-45533407 | None:intergenic | 25.0% |
| ! | TTTCAGATGGTTTAATCTAA+AGG | + | chr7.4:45533389-45533408 | None:intergenic | 25.0% |
| !! | AAATAAAAGACCTTAACTTG+AGG | + | chr7.4:45531121-45531140 | None:intergenic | 25.0% |
| !! | AGTCATTTATTAGTTTCAGA+TGG | + | chr7.4:45533402-45533421 | None:intergenic | 25.0% |
| !! | CATATTTTATCCTCAAGTTA+AGG | - | chr7.4:45531108-45531127 | MS.gene66107:CDS | 25.0% |
| !! | CGTATAGTACAATTCAATTT+TGG | - | chr7.4:45531701-45531720 | MS.gene66107:intron | 25.0% |
| !! | CTTTCAGTTTATTGATGATT+TGG | - | chr7.4:45532769-45532788 | MS.gene66107:intron | 25.0% |
| !!! | AGTCTTTTTTTTTTTGTGGT+GGG | + | chr7.4:45533175-45533194 | None:intergenic | 25.0% |
| !!! | CAACAGTCTTTTTTTTTTTG+TGG | + | chr7.4:45533179-45533198 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTTACTTCAGAA+TGG | + | chr7.4:45532322-45532341 | None:intergenic | 25.0% |
| !!! | TTTGTTTCTCTTTTCATCTT+CGG | + | chr7.4:45532982-45533001 | None:intergenic | 25.0% |
| AAATAGGTTGCTAAGGAATA+GGG | - | chr7.4:45533430-45533449 | MS.gene66107:intron | 30.0% | |
| AACATTATCGTGTAAGATGT+TGG | + | chr7.4:45531993-45532012 | None:intergenic | 30.0% | |
| AAGTTACAAATAGGTTGCTA+AGG | - | chr7.4:45533423-45533442 | MS.gene66107:intron | 30.0% | |
| AATCTAGATCCATAAACTGA+AGG | - | chr7.4:45531655-45531674 | MS.gene66107:intron | 30.0% | |
| AATCTTGTAAGTTTGGACTT+TGG | + | chr7.4:45531223-45531242 | None:intergenic | 30.0% | |
| ATATATCAATCACGTGAATG+TGG | + | chr7.4:45531546-45531565 | None:intergenic | 30.0% | |
| ATCATTAGATCAAGATCGAA+TGG | - | chr7.4:45531571-45531590 | MS.gene66107:intron | 30.0% | |
| ATTCTGAGTACATTAACATG+TGG | + | chr7.4:45531736-45531755 | None:intergenic | 30.0% | |
| CATCAATAAACTGAAAGAGA+GGG | + | chr7.4:45532766-45532785 | None:intergenic | 30.0% | |
| GAAAAAAGCCTTCTTTATAG+AGG | + | chr7.4:45532597-45532616 | None:intergenic | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr7.4:45533131-45533150 | MS.gene66107:intron | 30.0% | |
| GTTCAGATTATGTTACCTTT+CGG | + | chr7.4:45533589-45533608 | None:intergenic | 30.0% | |
| TCATCAATAAACTGAAAGAG+AGG | + | chr7.4:45532767-45532786 | None:intergenic | 30.0% | |
| TGAGATACGTTCTTCTAAAT+TGG | + | chr7.4:45533540-45533559 | None:intergenic | 30.0% | |
| TTCAGTTTATGGATCTAGAT+TGG | + | chr7.4:45531656-45531675 | None:intergenic | 30.0% | |
| TTTCATAAGCTTAACTCAGT+TGG | - | chr7.4:45533104-45533123 | MS.gene66107:intron | 30.0% | |
| !!! | CAGTCTTTTTTTTTTTGTGG+TGG | + | chr7.4:45533176-45533195 | None:intergenic | 30.0% |
| !!! | CGTACACTTTTTTTCTTTCA+CGG | + | chr7.4:45533472-45533491 | None:intergenic | 30.0% |
| !!! | GTACACTTTTTTTCTTTCAC+GGG | + | chr7.4:45533471-45533490 | None:intergenic | 30.0% |
| AGATGGTTTAATCTAAAGGG+CGG | + | chr7.4:45533385-45533404 | None:intergenic | 35.0% | |
| AGTAGACGTATAACGTAAGT+TGG | - | chr7.4:45531323-45531342 | MS.gene66107:intron | 35.0% | |
| AGTTTATGGATCTAGATTGG+AGG | + | chr7.4:45531653-45531672 | None:intergenic | 35.0% | |
| ATAGACGTCTCAAAAGGTAA+GGG | - | chr7.4:45532438-45532457 | MS.gene66107:intron | 35.0% | |
| ATTATAAGGGCCCCTTAATA+TGG | + | chr7.4:45531350-45531369 | None:intergenic | 35.0% | |
| CAAATAGGTTGCTAAGGAAT+AGG | - | chr7.4:45533429-45533448 | MS.gene66107:intron | 35.0% | |
| CAGTGAAAGATGAATCATTC+AGG | - | chr7.4:45533317-45533336 | MS.gene66107:intron | 35.0% | |
| CATGAAGAAGATGAAGATGA+AGG | + | chr7.4:45530994-45531013 | None:intergenic | 35.0% | |
| CGGTACAAAAATTCGTACAA+CGG | + | chr7.4:45532732-45532751 | None:intergenic | 35.0% | |
| CTTCATCTTCATCTTCTTCA+TGG | - | chr7.4:45530992-45531011 | MS.gene66107:intron | 35.0% | |
| CTTCATCTTCTTCATGGAAT+AGG | - | chr7.4:45530998-45531017 | MS.gene66107:intron | 35.0% | |
| GAGAATCTATTCTCTTTCTC+TGG | + | chr7.4:45533079-45533098 | None:intergenic | 35.0% | |
| TATCGATAGACTCTTGACTT+AGG | + | chr7.4:45531171-45531190 | None:intergenic | 35.0% | |
| TCAACTAGGTCATCTATTGT+GGG | - | chr7.4:45532073-45532092 | MS.gene66107:intron | 35.0% | |
| TCATTGCTCTCATCAACTTT+GGG | + | chr7.4:45533734-45533753 | None:intergenic | 35.0% | |
| TCGATGGTATTTACTTGTAC+AGG | - | chr7.4:45533691-45533710 | MS.gene66107:CDS | 35.0% | |
| TGACACTTACCAAATCTATG+TGG | + | chr7.4:45531039-45531058 | None:intergenic | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr7.4:45533136-45533155 | MS.gene66107:intron | 35.0% | |
| TTCATTGCTCTCATCAACTT+TGG | + | chr7.4:45533735-45533754 | None:intergenic | 35.0% | |
| TTCCTTCATCTCAGTATCAT+TGG | + | chr7.4:45530953-45530972 | None:intergenic | 35.0% | |
| TTTGCTTTGCTTATTTGTGC+TGG | + | chr7.4:45532903-45532922 | None:intergenic | 35.0% | |
| ! | TAAGCTTAACTCAGTTGGTA+TGG | - | chr7.4:45533109-45533128 | MS.gene66107:intron | 35.0% |
| ! | TGTACGAATTTTTGTACCGA+GGG | - | chr7.4:45532733-45532752 | MS.gene66107:intron | 35.0% |
| ! | TTGTACGAATTTTTGTACCG+AGG | - | chr7.4:45532732-45532751 | MS.gene66107:intron | 35.0% |
| ! | TTTTCTTATTCTTCACGTCC+AGG | - | chr7.4:45532928-45532947 | MS.gene66107:intron | 35.0% |
| !! | AAAGTTGATGAGAGCAATGA+AGG | - | chr7.4:45533734-45533753 | MS.gene66107:CDS | 35.0% |
| !! | ACGTAAGTTGGTCCATATTA+AGG | - | chr7.4:45531335-45531354 | MS.gene66107:intron | 35.0% |
| !! | CGTAAGTTGGTCCATATTAA+GGG | - | chr7.4:45531336-45531355 | MS.gene66107:intron | 35.0% |
| !! | GTAAGTTGGTCCATATTAAG+GGG | - | chr7.4:45531337-45531356 | MS.gene66107:intron | 35.0% |
| !!! | CTTTTTTTTTTTGTGGTGGG+CGG | + | chr7.4:45533172-45533191 | None:intergenic | 35.0% |
| !!! | TTTTTTGAATTGGGGAGAGA+TGG | - | chr7.4:45532676-45532695 | MS.gene66107:intron | 35.0% |
| !!! | TTTTTTTTTTTGTGGTGGGC+GGG | + | chr7.4:45533171-45533190 | None:intergenic | 35.0% |
| AGCCAATGATACTGAGATGA+AGG | - | chr7.4:45530948-45530967 | MS.gene66107:CDS | 40.0% | |
| AGGAACATAGACGTCTCAAA+AGG | - | chr7.4:45532432-45532451 | MS.gene66107:intron | 40.0% | |
| CACTTACCAAATCTATGTGG+AGG | + | chr7.4:45531036-45531055 | None:intergenic | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr7.4:45533138-45533157 | MS.gene66107:intron | 40.0% | |
| CATAGACGTCTCAAAAGGTA+AGG | - | chr7.4:45532437-45532456 | MS.gene66107:intron | 40.0% | |
| CGGTTACATTGCTTTGATTG+TGG | + | chr7.4:45532352-45532371 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr7.4:45533137-45533156 | MS.gene66107:intron | 40.0% | |
| GCATTCACACCTTCAGTTTA+TGG | + | chr7.4:45531667-45531686 | None:intergenic | 40.0% | |
| GGATTCCTATCTAATGATCC+AGG | + | chr7.4:45532961-45532980 | None:intergenic | 40.0% | |
| GTCAACTAGGTCATCTATTG+TGG | - | chr7.4:45532072-45532091 | MS.gene66107:intron | 40.0% | |
| TACGTCCTGGATCATTAGAT+AGG | - | chr7.4:45532953-45532972 | MS.gene66107:intron | 40.0% | |
| TGAGGATCTATTCGAAGTTC+CGG | - | chr7.4:45532268-45532287 | MS.gene66107:CDS | 40.0% | |
| TTATGTTACCTTTCGGAGCA+TGG | + | chr7.4:45533582-45533601 | None:intergenic | 40.0% | |
| ! | TTTTTCTTTCACGGGCTTGT+TGG | + | chr7.4:45533463-45533482 | None:intergenic | 40.0% |
| !! | TTTTCTTTCACGGGCTTGTT+GGG | + | chr7.4:45533462-45533481 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTTGTGGTGGGCG+GGG | + | chr7.4:45533170-45533189 | None:intergenic | 40.0% |
| AATGATCCAGGACGTAATCC+TGG | + | chr7.4:45532949-45532968 | None:intergenic | 45.0% | |
| AATTCCAGACGATAGCGATG+AGG | - | chr7.4:45532250-45532269 | MS.gene66107:CDS | 45.0% | |
| ATGAAGGAAGCTGCAACAAC+AGG | - | chr7.4:45530964-45530983 | MS.gene66107:intron | 45.0% | |
| ATGGATCTAGATTGGAGGCT+TGG | + | chr7.4:45531648-45531667 | None:intergenic | 45.0% | |
| CATTGTGTACCTTCCACATC+CGG | + | chr7.4:45532290-45532309 | None:intergenic | 45.0% | |
| CCTATGCCTCCACATAGATT+TGG | - | chr7.4:45531027-45531046 | MS.gene66107:intron | 45.0% | |
| CTAGGTCATCTATTGTGGGA+CGG | - | chr7.4:45532077-45532096 | MS.gene66107:intron | 45.0% | |
| GTCTATGTTCCTTGTCTGCA+GGG | + | chr7.4:45532424-45532443 | None:intergenic | 45.0% | |
| GTTGCTAAGGAATAGGGTCT+CGG | - | chr7.4:45533436-45533455 | MS.gene66107:intron | 45.0% | |
| TCTATTCGAAGTTCCGGATG+TGG | - | chr7.4:45532274-45532293 | MS.gene66107:CDS | 45.0% | |
| ! | AATCTATGTGGAGGCATAGG+AGG | + | chr7.4:45531027-45531046 | None:intergenic | 45.0% |
| ! | ATCTATGTGGAGGCATAGGA+GGG | + | chr7.4:45531026-45531045 | None:intergenic | 45.0% |
| ! | CCAAATCTATGTGGAGGCAT+AGG | + | chr7.4:45531030-45531049 | None:intergenic | 45.0% |
| !! | ATTGTTAAATAAATATTTAA+CGG | + | chr7.4:45531409-45531428 | None:intergenic | 5.0% |
| AAGAGAGGGATTCGAACCCT+CGG | + | chr7.4:45532752-45532771 | None:intergenic | 50.0% | |
| ACCGATGCTCAACTTCAAGC+AGG | - | chr7.4:45532368-45532387 | MS.gene66107:CDS | 50.0% | |
| AGATCCTCATCGCTATCGTC+TGG | + | chr7.4:45532257-45532276 | None:intergenic | 50.0% | |
| CGTCTATGTTCCTTGTCTGC+AGG | + | chr7.4:45532425-45532444 | None:intergenic | 50.0% | |
| GCCTGCTTGAAGTTGAGCAT+CGG | + | chr7.4:45532372-45532391 | None:intergenic | 50.0% | |
| GTCATCTATTGTGGGACGGA+GGG | - | chr7.4:45532081-45532100 | MS.gene66107:intron | 50.0% | |
| TTCGAAGTTCCGGATGTGGA+AGG | - | chr7.4:45532278-45532297 | MS.gene66107:CDS | 50.0% | |
| !! | GATGGCTGAGTGGACTAAAG+CGG | - | chr7.4:45532694-45532713 | MS.gene66107:intron | 50.0% |
| ATTGGGGAGAGATGGCTGAG+TGG | - | chr7.4:45532684-45532703 | MS.gene66107:intron | 55.0% | |
| CAACTTCAAGCAGGCTTCCC+CGG | - | chr7.4:45532377-45532396 | MS.gene66107:CDS | 55.0% | |
| CGGAAGAAACCCTGCAGACA+AGG | - | chr7.4:45532412-45532431 | MS.gene66107:CDS | 55.0% | |
| GGTCATCTATTGTGGGACGG+AGG | - | chr7.4:45532080-45532099 | MS.gene66107:intron | 55.0% | |
| TCACGTCCAGGATTACGTCC+TGG | - | chr7.4:45532940-45532959 | MS.gene66107:intron | 55.0% | |
| TCGGAGCATGGCGTTCTCAT+TGG | + | chr7.4:45533570-45533589 | None:intergenic | 55.0% | |
| TGAGAACGCCATGCTCCGAA+AGG | - | chr7.4:45533571-45533590 | MS.gene66107:intron | 55.0% | |
| TGTCTGCAGGGTTTCTTCCG+CGG | + | chr7.4:45532412-45532431 | None:intergenic | 55.0% | |
| !! | GGCTGAGTGGACTAAAGCGG+CGG | - | chr7.4:45532697-45532716 | MS.gene66107:intron | 60.0% |
| CTGCAGGGTTTCTTCCGCGG+CGG | + | chr7.4:45532409-45532428 | None:intergenic | 65.0% | |
| TCTTCCGCGGCGGCGCTTTC+CGG | + | chr7.4:45532399-45532418 | None:intergenic | 70.0% | |
| CTTCCGCGGCGGCGCTTTCC+GGG | + | chr7.4:45532398-45532417 | None:intergenic | 75.0% | |
| GGTGGGCGGGGTTCGAACCC+CGG | + | chr7.4:45533158-45533177 | None:intergenic | 75.0% | |
| TTCCGCGGCGGCGCTTTCCG+GGG | + | chr7.4:45532397-45532416 | None:intergenic | 75.0% | |
| !! | TTCCCCGGAAAGCGCCGCCG+CGG | - | chr7.4:45532392-45532411 | MS.gene66107:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 45530934 | 45533760 | 45530934 | ID=MS.gene66107 |
| chr7.4 | mRNA | 45530934 | 45533760 | 45530934 | ID=MS.gene66107.t1;Parent=MS.gene66107 |
| chr7.4 | exon | 45533646 | 45533760 | 45533646 | ID=MS.gene66107.t1.exon1;Parent=MS.gene66107.t1 |
| chr7.4 | CDS | 45533646 | 45533760 | 45533646 | ID=cds.MS.gene66107.t1;Parent=MS.gene66107.t1 |
| chr7.4 | exon | 45532241 | 45532436 | 45532241 | ID=MS.gene66107.t1.exon2;Parent=MS.gene66107.t1 |
| chr7.4 | CDS | 45532241 | 45532436 | 45532241 | ID=cds.MS.gene66107.t1;Parent=MS.gene66107.t1 |
| chr7.4 | exon | 45531102 | 45531258 | 45531102 | ID=MS.gene66107.t1.exon3;Parent=MS.gene66107.t1 |
| chr7.4 | CDS | 45531102 | 45531258 | 45531102 | ID=cds.MS.gene66107.t1;Parent=MS.gene66107.t1 |
| chr7.4 | exon | 45530934 | 45530981 | 45530934 | ID=MS.gene66107.t1.exon4;Parent=MS.gene66107.t1 |
| chr7.4 | CDS | 45530934 | 45530981 | 45530934 | ID=cds.MS.gene66107.t1;Parent=MS.gene66107.t1 |
| Gene Sequence |
| Protein sequence |
