AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05505


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05505.t1 MTR_6g086600 99.123 456 4 0 3 458 71 526 0.0 935
MS.gene05505.t1 MTR_6g086600 99.123 456 4 0 3 458 62 517 0.0 933
MS.gene05505.t1 MTR_1g070360 39.759 249 143 5 108 351 21 267 7.50e-55 184
MS.gene05505.t1 MTR_1g016110 40.000 180 103 3 105 279 8 187 1.08e-27 112
MS.gene05505.t1 MTR_1g019620 40.000 180 103 3 105 279 55 234 1.84e-27 112
MS.gene05505.t1 MTR_1g016110 40.000 180 103 3 105 279 55 234 2.08e-27 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05505.t1 AT3G24430 88.367 447 52 0 11 457 78 524 0.0 827
MS.gene05505.t1 AT4G19540 38.996 259 151 5 105 358 39 295 2.08e-53 182
MS.gene05505.t1 AT5G50960 41.667 180 100 4 105 279 55 234 1.25e-33 130

Find 110 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTATACTTTGGCTGATA+TGG 0.137501 6.2:-84274295 MS.gene05505:CDS
CAACACATACTCCTAGATTT+TGG 0.188730 6.2:+84272398 None:intergenic
ATATTTGATGCTGATATTTA+TGG 0.193240 6.2:-84274258 MS.gene05505:CDS
ATGCGCGGCCCTATGGTTTC+TGG 0.254274 6.2:-84274018 MS.gene05505:CDS
GGAGTCAAGTTGGTTTCTTT+TGG 0.256137 6.2:-84274066 MS.gene05505:CDS
AGACATACAGTCGGTCTAAT+AGG 0.268791 6.2:+84272613 None:intergenic
CCCATTGGCCGAATTTCTTC+AGG 0.291086 6.2:+84271621 None:intergenic
TTGTCACAGCTATCCGCTTC+TGG 0.295162 6.2:-84272478 MS.gene05505:intron
TATCCATTTGGTAGAGGTTC+AGG 0.312034 6.2:-84272807 MS.gene05505:CDS
TGAGGATCTGCCACCACTTC+AGG 0.313787 6.2:+84272442 None:intergenic
ACAATTACAGCAGCAGTTAA+TGG 0.320244 6.2:+84273084 None:intergenic
TCTTCAGGTTCAATGTAATC+AGG 0.349940 6.2:+84271636 None:intergenic
CATGTATTCAGTTGGAATTA+TGG 0.354832 6.2:+84274089 None:intergenic
TGGTCCAAGCTTACCAACTA+TGG 0.359534 6.2:-84274238 MS.gene05505:CDS
AGTAAACCTTGCTTATACTT+TGG 0.360089 6.2:-84274304 MS.gene05505:CDS
GCTTATACTTTGGCTGATAT+GGG 0.360827 6.2:-84274294 MS.gene05505:CDS
TTGCAGGTTGTTCAGCAGTT+TGG 0.361065 6.2:-84272658 MS.gene05505:intron
TCATTCCGTCTCACTGTTGC+AGG 0.363783 6.2:+84271798 None:intergenic
ACAATATCTGTTCCAAAGTC+TGG 0.368544 6.2:+84275087 None:intergenic
TGCAATTATGCGCGGCCCTA+TGG 0.383680 6.2:-84274025 MS.gene05505:CDS
CAATTACAGCAGCAGTTAAT+GGG 0.383745 6.2:+84273085 None:intergenic
TTGAATCGCAGGTGTCGTTT+CGG 0.394247 6.2:-84274943 MS.gene05505:intron
ATCGACATGCCTCCGGGAAC+AGG 0.402030 6.2:-84273610 MS.gene05505:CDS
AAGAATTCTTCATCTGAATC+TGG 0.406817 6.2:+84271828 None:intergenic
CAGATCATTGATCCAGACTT+TGG 0.418548 6.2:-84275099 MS.gene05505:CDS
AGTTGAATGTCTCCTGTTCC+CGG 0.419810 6.2:+84273598 None:intergenic
ACATTGAACCTGAAGAAATT+CGG 0.423333 6.2:-84271629 MS.gene05505:CDS
AGGTGGTGGCAGTGCTCCCT+TGG 0.423999 6.2:-84274634 MS.gene05505:CDS
ATTGTCTGCAGTTGATCATA+AGG 0.425058 6.2:+84270771 None:intergenic
GAGGAGATTCACCTTGCAAC+TGG 0.430371 6.2:+84274508 None:intergenic
TTCAATGTAATCAGGAATAT+CGG 0.430600 6.2:+84271644 None:intergenic
GGAAATTCCTCGGTATCAAC+TGG 0.438796 6.2:-84275156 MS.gene05505:CDS
TCCAAGATATTCCAAAATCT+AGG 0.444913 6.2:-84272409 MS.gene05505:CDS
GACATACAGTCGGTCTAATA+GGG 0.445514 6.2:+84272614 None:intergenic
CCTTGTTATCGACATGCCTC+CGG 0.447834 6.2:-84273617 MS.gene05505:CDS
TGGTAGAGGTTCAGGATCTC+AGG 0.450907 6.2:-84272799 MS.gene05505:intron
GGAAAATCGAATATTAGAAA+TGG 0.456568 6.2:-84274208 MS.gene05505:intron
CATAATTCCAACTGAATACA+TGG 0.456907 6.2:-84274088 MS.gene05505:CDS
CATTCAACTCACTTTATGCC+AGG 0.470185 6.2:-84273584 MS.gene05505:intron
TCGATGTTGCAAAAGGAGTT+CGG 0.470587 6.2:-84273035 MS.gene05505:CDS
CCTGAAGAAATTCGGCCAAT+GGG 0.471972 6.2:-84271621 MS.gene05505:CDS
CATATGACAGTTTGAGCAGC+AGG 0.476211 6.2:-84274663 MS.gene05505:intron
CTATCCGCTTCTGGAGATAG+TGG 0.480474 6.2:-84272469 MS.gene05505:CDS
GAGACCATAGTTGGTAAGCT+TGG 0.482760 6.2:+84274234 None:intergenic
CTTGTTATCGACATGCCTCC+GGG 0.484187 6.2:-84273616 MS.gene05505:CDS
GGAAGTTGCTCTGCGAATAA+CGG 0.492258 6.2:+84274569 None:intergenic
GTTTGAGCAGCAGGCAAATG+AGG 0.503635 6.2:-84274654 MS.gene05505:CDS
TGAATACATGGGAGTCAAGT+TGG 0.507061 6.2:-84274076 MS.gene05505:CDS
TCATTTACCACGTCCTTGAT+CGG 0.507285 6.2:+84274896 None:intergenic
GATCCTGAACCTCTACCAAA+TGG 0.508732 6.2:+84272804 None:intergenic
ATGGCCTGATGGGTTTAGTC+AGG 0.515668 6.2:-84271577 MS.gene05505:intron
ATCAGGCCATGTTATTGAAA+CGG 0.517279 6.2:+84271590 None:intergenic
TTCGCAGAGCAACTTCCAGC+AGG 0.518320 6.2:-84274563 MS.gene05505:CDS
TCGTTCATCGATGTTGCAAA+AGG 0.518766 6.2:-84273042 MS.gene05505:CDS
TTGACTCCCATGTATTCAGT+TGG 0.519307 6.2:+84274081 None:intergenic
TTTCAATAACATGGCCTGAT+GGG 0.520664 6.2:-84271587 MS.gene05505:CDS
GAAATCGTCTGTAAACCTGC+TGG 0.523125 6.2:+84274548 None:intergenic
GTTTCAATAACATGGCCTGA+TGG 0.525709 6.2:-84271588 MS.gene05505:CDS
GGTGGTGGCAGTGCTCCCTT+GGG 0.525748 6.2:-84274633 MS.gene05505:CDS
GCAGGAATAGAATACCTTGT+TGG 0.530146 6.2:+84272353 None:intergenic
AGATACTATCCATTTGGTAG+AGG 0.534523 6.2:-84272813 MS.gene05505:CDS
TTTAAACAGGATGAATGGAC+GGG 0.535044 6.2:-84271687 MS.gene05505:intron
TACACCAGCATGTCCGATCA+AGG 0.535639 6.2:-84274909 MS.gene05505:CDS
CTTACCAACTATGGTCTCTC+CGG 0.539146 6.2:-84274229 MS.gene05505:CDS
ACCTGAAGAAATTCGGCCAA+TGG 0.544677 6.2:-84271622 MS.gene05505:CDS
GAAACGGCATAATTTCCCAT+TGG 0.545905 6.2:+84271606 None:intergenic
CAGACAATGGAACGGTTAGT+TGG 0.548019 6.2:-84270756 MS.gene05505:CDS
CGCTTTCAACACGTCATCCT+CGG 0.552280 6.2:+84275128 None:intergenic
ACTCGGTAGTAGTGAGAAGT+TGG 0.557427 6.2:+84273986 None:intergenic
GCTGATATGGGTGCTAGAGT+TGG 0.558279 6.2:-84274282 MS.gene05505:CDS
TTGCAGATCGATAAAGCTCT+AGG 0.558415 6.2:-84275042 MS.gene05505:CDS
ATTACCTGACTAAACCCATC+AGG 0.562451 6.2:+84271573 None:intergenic
ATATGCAGTTGGAAATTCCT+CGG 0.567670 6.2:-84275166 MS.gene05505:intron
GGAACAGATATTGTTACTTG+CGG 0.573860 6.2:-84275078 MS.gene05505:CDS
CAACAGTGAGACGGAATGAT+CGG 0.575612 6.2:-84271794 MS.gene05505:CDS
ACATTGACATTCTTGACCCA+AGG 0.579491 6.2:+84274617 None:intergenic
GCAGCAGGCAAATGAGGTGG+TGG 0.582151 6.2:-84274648 MS.gene05505:CDS
AGCATGTCCGATCAAGGACG+TGG 0.585341 6.2:-84274903 MS.gene05505:intron
ACGTCCTTGATCGGACATGC+TGG 0.585612 6.2:+84274905 None:intergenic
CCGGAGGCATGTCGATAACA+AGG 0.586363 6.2:+84273617 None:intergenic
TAGTGACTCCAGAAACCATA+GGG 0.591488 6.2:+84274010 None:intergenic
TGCCTTGACTGATTTATCGT+AGG 0.595459 6.2:+84271866 None:intergenic
TGCATCCTGCAACAGTGAGA+CGG 0.597022 6.2:-84271803 MS.gene05505:CDS
ATTATGCCGTTTCAATAACA+TGG 0.597601 6.2:-84271596 MS.gene05505:CDS
TTATGATCAACTGCAGACAA+TGG 0.600717 6.2:-84270769 MS.gene05505:CDS
TATCGCTGTATCCAGTTGCA+AGG 0.603418 6.2:-84274519 MS.gene05505:intron
TATCAGCCAAAGTATAAGCA+AGG 0.626958 6.2:+84274298 None:intergenic
TAGTGGAATGCCTGAAGTGG+TGG 0.627513 6.2:-84272452 MS.gene05505:CDS
CATTCCACTATCTCCAGAAG+CGG 0.629862 6.2:+84272465 None:intergenic
TTAAACAGGATGAATGGACG+GGG 0.643427 6.2:-84271686 MS.gene05505:intron
GACCTACGATAAATCAGTCA+AGG 0.644036 6.2:-84271868 MS.gene05505:CDS
GGCTGTTCCAGTTGATACCG+AGG 0.645759 6.2:+84275149 None:intergenic
TTAGTGACTCCAGAAACCAT+AGG 0.646928 6.2:+84274009 None:intergenic
TGTGCTAAAATACGCCAACA+AGG 0.648845 6.2:-84272367 MS.gene05505:intron
ATCAACTGCAGACAATGGAA+CGG 0.651676 6.2:-84270764 MS.gene05505:CDS
GGTATCAACTGGAACAGCCG+AGG 0.653632 6.2:-84275145 MS.gene05505:CDS
CATTGACATTCTTGACCCAA+GGG 0.654050 6.2:+84274618 None:intergenic
TGATCGGTCTGCTCAGAGTG+TGG 0.657675 6.2:-84271778 MS.gene05505:intron
TGAGCAGCAGGCAAATGAGG+TGG 0.665630 6.2:-84274651 MS.gene05505:CDS
CAAGGACGTGCAATTATGCG+CGG 0.675432 6.2:-84274033 MS.gene05505:CDS
ATCTTGGAAACATCGCCTTG+AGG 0.676959 6.2:+84272424 None:intergenic
ATAATTCCAACTGAATACAT+GGG 0.686201 6.2:-84274087 MS.gene05505:CDS
TTCTCGACAACAGCTACACA+AGG 0.689907 6.2:+84272864 None:intergenic
GATCGATAAAGCTCTAGGAG+AGG 0.690504 6.2:-84275037 MS.gene05505:intron
AGATAGTGGAATGCCTGAAG+TGG 0.694339 6.2:-84272455 MS.gene05505:CDS
ATAGGGAGATCAAATAGATG+CGG 0.696235 6.2:+84272631 None:intergenic
GAAGTGGTGGCAGATCCTCA+AGG 0.698028 6.2:-84272439 MS.gene05505:CDS
TAAACAGGATGAATGGACGG+GGG 0.700512 6.2:-84271685 MS.gene05505:intron
TGAATGTCTCCTGTTCCCGG+AGG 0.729128 6.2:+84273601 None:intergenic
AACTTCTCACTACTACCGAG+TGG 0.751912 6.2:-84273984 MS.gene05505:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACGTATTATAATAAAAAATT+AGG + chr6.2:84275159-84275178 None:intergenic 10.0%
!! TAAAGATTATTATATAAATG+TGG + chr6.2:84272300-84272319 None:intergenic 10.0%
!! TTTATGTTATTCAAATTTAT+TGG - chr6.2:84272189-84272208 MS.gene05505:intron 10.0%
!!! GTTTTTAAATGTATAATATA+GGG - chr6.2:84271858-84271877 MS.gene05505:CDS 10.0%
!!! TGTTTTTAAATGTATAATAT+AGG - chr6.2:84271857-84271876 MS.gene05505:CDS 10.0%
!! AAAGTGAAAAAATTTGTATT+CGG + chr6.2:84274060-84274079 None:intergenic 15.0%
!! ATTATACATTTAAAAACACA+TGG + chr6.2:84271855-84271874 None:intergenic 15.0%
!! ATTATGATTATAAGTTAGTA+AGG + chr6.2:84275132-84275151 None:intergenic 15.0%
!! GTAATTAGATTAACTATTTA+TGG + chr6.2:84271612-84271631 None:intergenic 15.0%
!! TATTATTGTGTTTATGTAAA+AGG - chr6.2:84273134-84273153 MS.gene05505:intron 15.0%
!! TGTCAAAAAAAATATAAATG+TGG + chr6.2:84272270-84272289 None:intergenic 15.0%
!! AAACATTCATTTCTTTATCA+TGG + chr6.2:84271267-84271286 None:intergenic 20.0%
!! AGTTAAAGTAATTACACTAT+AGG + chr6.2:84272873-84272892 None:intergenic 20.0%
!! ATATATACTTAATGGAAAAG+CGG + chr6.2:84273899-84273918 None:intergenic 20.0%
!! ATATTTGATGCTGATATTTA+TGG - chr6.2:84271765-84271784 MS.gene05505:intron 20.0%
!! GTCAAAAATAAAAATTTGCA+GGG - chr6.2:84271672-84271691 MS.gene05505:CDS 20.0%
!! TAAACTCATTACATATAGAA+GGG - chr6.2:84271210-84271229 MS.gene05505:intron 20.0%
!! TCAAAAATAAAAATTTGCAG+GGG - chr6.2:84271673-84271692 MS.gene05505:CDS 20.0%
!! TGTCAAAAATAAAAATTTGC+AGG - chr6.2:84271671-84271690 MS.gene05505:CDS 20.0%
!!! AAGCTAACTTTATTTTAAAC+AGG - chr6.2:84274323-84274342 MS.gene05505:CDS 20.0%
!!! AATACAATTTTTGTATCATC+TGG + chr6.2:84274782-84274801 None:intergenic 20.0%
!!! ACTTTAAAACTAGTTACATT+CGG + chr6.2:84273741-84273760 None:intergenic 20.0%
!!! AGTTTTGCATATATACTTAA+TGG + chr6.2:84273907-84273926 None:intergenic 20.0%
!!! ATTTCTAATATTCGATTTTC+CGG + chr6.2:84271816-84271835 None:intergenic 20.0%
!!! TAATTTAAAAAGCATCAAGT+AGG + chr6.2:84272246-84272265 None:intergenic 20.0%
!!! TTAAATGACATGATTTGTTA+AGG + chr6.2:84272138-84272157 None:intergenic 20.0%
!!! TTTAAAGCTTTCTTTTTCAA+TGG + chr6.2:84274500-84274519 None:intergenic 20.0%
!!! TTTATTTTAAACAGGATGAA+TGG - chr6.2:84274331-84274350 MS.gene05505:CDS 20.0%
!!! TTTTCATTATGCAATATTCA+GGG + chr6.2:84273945-84273964 None:intergenic 20.0%
!!! TTTTTCATTATGCAATATTC+AGG + chr6.2:84273946-84273965 None:intergenic 20.0%
! AAAAATAAAAATTTGCAGGG+GGG - chr6.2:84271675-84271694 MS.gene05505:CDS 25.0%
! AAAGTTCCTTCTGTTAAAAA+CGG - chr6.2:84274846-84274865 MS.gene05505:intron 25.0%
! AATATGACCAATATATCATG+AGG + chr6.2:84271537-84271556 None:intergenic 25.0%
! ATAATTCCAACTGAATACAT+GGG - chr6.2:84271936-84271955 MS.gene05505:intron 25.0%
! CAAAAATAAAAATTTGCAGG+GGG - chr6.2:84271674-84271693 MS.gene05505:CDS 25.0%
! GGAAAATCGAATATTAGAAA+TGG - chr6.2:84271815-84271834 MS.gene05505:CDS 25.0%
! GTAAACTCATTACATATAGA+AGG - chr6.2:84271209-84271228 MS.gene05505:intron 25.0%
! TATTGCATAATGAAAAACTG+CGG - chr6.2:84273949-84273968 MS.gene05505:intron 25.0%
! TTCAATGTAATCAGGAATAT+CGG + chr6.2:84274382-84274401 None:intergenic 25.0%
! TTTGATGTCTTAAAAATGCA+GGG + chr6.2:84274706-84274725 None:intergenic 25.0%
!! ATTTGGTTTACAAAATGTAG+GGG - chr6.2:84272371-84272390 MS.gene05505:CDS 25.0%
!! GACACAAAAAATGTTTCTTT+TGG - chr6.2:84272697-84272716 MS.gene05505:intron 25.0%
!! GATTTGGTTTACAAAATGTA+GGG - chr6.2:84272370-84272389 MS.gene05505:CDS 25.0%
!! TGTTTTCTTATATATGCAGT+TGG - chr6.2:84270846-84270865 MS.gene05505:intron 25.0%
!!! CAAAAATTGTATTTTTTCCG+CGG - chr6.2:84274789-84274808 MS.gene05505:intron 25.0%
!!! CATTTTTAAGACATCAAACA+TGG - chr6.2:84274708-84274727 MS.gene05505:intron 25.0%
!!! TGATTTGGTTTACAAAATGT+AGG - chr6.2:84272369-84272388 MS.gene05505:CDS 25.0%
AAGAATTCTTCATCTGAATC+TGG + chr6.2:84274198-84274217 None:intergenic 30.0%
AAGTTGAACCTAAAGCAAAA+TGG + chr6.2:84274929-84274948 None:intergenic 30.0%
AATTACATGAAACTCAAGAC+TGG + chr6.2:84271312-84271331 None:intergenic 30.0%
AATTGTCTCGGTTAGAAATA+TGG - chr6.2:84274546-84274565 MS.gene05505:CDS 30.0%
AATTTGTATTCGGATGCATT+AGG + chr6.2:84274050-84274069 None:intergenic 30.0%
ACACTTTCGGACAAATTATA+TGG + chr6.2:84274755-84274774 None:intergenic 30.0%
ACATTGAACCTGAAGAAATT+CGG - chr6.2:84274394-84274413 MS.gene05505:intron 30.0%
AGATATGCTATGCATAGAAT+AGG - chr6.2:84272090-84272109 MS.gene05505:intron 30.0%
AGCACATATATTAGGTTTGA+AGG + chr6.2:84274602-84274621 None:intergenic 30.0%
AGTAAACCTTGCTTATACTT+TGG - chr6.2:84271719-84271738 MS.gene05505:intron 30.0%
ATAAATCAGCAGTCAACAAA+TGG + chr6.2:84275077-84275096 None:intergenic 30.0%
ATGAGACGAAATGTAAATCA+TGG + chr6.2:84271634-84271653 None:intergenic 30.0%
CATAATTCCAACTGAATACA+TGG - chr6.2:84271935-84271954 MS.gene05505:intron 30.0%
CATATCAAGCATAACCTATT+AGG + chr6.2:84272343-84272362 None:intergenic 30.0%
CATGTATTCAGTTGGAATTA+TGG + chr6.2:84271937-84271956 None:intergenic 30.0%
CATTAGCATATCAATTGTCT+CGG - chr6.2:84274534-84274553 MS.gene05505:CDS 30.0%
CTCATATTGAGCTGAAATTT+AGG - chr6.2:84272789-84272808 MS.gene05505:intron 30.0%
CTTGAGTTTCATGTAATTCT+GGG - chr6.2:84271314-84271333 MS.gene05505:intron 30.0%
GAATAGTATCAAGTATGTGT+TGG + chr6.2:84273096-84273115 None:intergenic 30.0%
GAGAGAAGAGAATAAACTAA+AGG + chr6.2:84273463-84273482 None:intergenic 30.0%
GATATGCTATGCATAGAATA+GGG - chr6.2:84272091-84272110 MS.gene05505:intron 30.0%
GGAAAAAGATACTATCCATT+TGG - chr6.2:84273204-84273223 MS.gene05505:intron 30.0%
GTAGTTCAATACATACTCTA+GGG + chr6.2:84272224-84272243 None:intergenic 30.0%
GTTTGATGTCTTAAAAATGC+AGG + chr6.2:84274707-84274726 None:intergenic 30.0%
TAAATCAGCAGTCAACAAAT+GGG + chr6.2:84275076-84275095 None:intergenic 30.0%
TCACACGTAAAATTTGATTG+CGG + chr6.2:84272848-84272867 None:intergenic 30.0%
TCCAAGATATTCCAAAATCT+AGG - chr6.2:84273614-84273633 MS.gene05505:CDS 30.0%
TCTTGAGTTTCATGTAATTC+TGG - chr6.2:84271313-84271332 MS.gene05505:intron 30.0%
TGAATCTCCTCATGATATAT+TGG - chr6.2:84271527-84271546 MS.gene05505:intron 30.0%
TGCAATGTGAAACAAACTAA+AGG + chr6.2:84272480-84272499 None:intergenic 30.0%
TGTGAAACAAACTAAAGGAT+TGG + chr6.2:84272475-84272494 None:intergenic 30.0%
TTGATGTCTTAAAAATGCAG+GGG + chr6.2:84274705-84274724 None:intergenic 30.0%
TTTGGTCAAGCACATATATT+AGG + chr6.2:84274610-84274629 None:intergenic 30.0%
! AAAGTTAGCTTCAAATGAGA+TGG + chr6.2:84274314-84274333 None:intergenic 30.0%
! ATTATGCCGTTTCAATAACA+TGG - chr6.2:84274427-84274446 MS.gene05505:intron 30.0%
! CAAAATCACTGCTCAATTTT+CGG - chr6.2:84273778-84273797 MS.gene05505:intron 30.0%
! CTTGATATGTAGTCTTGATT+TGG - chr6.2:84272354-84272373 MS.gene05505:intron 30.0%
! TAAGTCGTTTGCGATAATTT+TGG - chr6.2:84271556-84271575 MS.gene05505:intron 30.0%
! TGGATAGTATCTTTTTCCAT+CGG + chr6.2:84273202-84273221 None:intergenic 30.0%
! TTTATCCAGAAGTATACTTC+TGG - chr6.2:84272672-84272691 MS.gene05505:intron 30.0%
! TTTTAAACAGGATGAATGGA+CGG - chr6.2:84274335-84274354 MS.gene05505:intron 30.0%
!!! ACATTGCATTTTAACTGTTG+TGG - chr6.2:84272492-84272511 MS.gene05505:intron 30.0%
!!! ATTACAATTTTTTTCCCTGG+TGG - chr6.2:84274994-84275013 MS.gene05505:intron 30.0%
!!! GCAATTACAATTTTTTTCCC+TGG - chr6.2:84274991-84275010 MS.gene05505:intron 30.0%
!!! TCCTAGATTTTGGAATATCT+TGG + chr6.2:84273618-84273637 None:intergenic 30.0%
AAATCAGCAGTCAACAAATG+GGG + chr6.2:84275075-84275094 None:intergenic 35.0%
AATCAAACGCCTCAAACTTT+CGG - chr6.2:84271015-84271034 MS.gene05505:intron 35.0%
ACAATATCTGTTCCAAAGTC+TGG + chr6.2:84270939-84270958 None:intergenic 35.0%
ACAATTACAGCAGCAGTTAA+TGG + chr6.2:84272942-84272961 None:intergenic 35.0%
AGATACTATCCATTTGGTAG+AGG - chr6.2:84273210-84273229 MS.gene05505:intron 35.0%
AGGCCTAAAGCAATCTTTAA+AGG - chr6.2:84274902-84274921 MS.gene05505:intron 35.0%
ATAGGGAGATCAAATAGATG+CGG + chr6.2:84273395-84273414 None:intergenic 35.0%
ATATGCAGTTGGAAATTCCT+CGG - chr6.2:84270857-84270876 MS.gene05505:intron 35.0%
ATCAGGCCATGTTATTGAAA+CGG + chr6.2:84274436-84274455 None:intergenic 35.0%
ATTGTCTGCAGTTGATCATA+AGG + chr6.2:84275255-84275274 None:intergenic 35.0%
CAATTACAGCAGCAGTTAAT+GGG + chr6.2:84272941-84272960 None:intergenic 35.0%
CATGTACGCTGTTCAATAAA+GGG - chr6.2:84274665-84274684 MS.gene05505:intron 35.0%
CCAAACTTCAGAACATCAAA+TGG - chr6.2:84274625-84274644 MS.gene05505:CDS 35.0%
GAAAACTTTGGGCTGAAATA+TGG - chr6.2:84272819-84272838 MS.gene05505:CDS 35.0%
GATTGTTCGATCATATTTGC+AGG - chr6.2:84273349-84273368 MS.gene05505:intron 35.0%
GCTTATACTTTGGCTGATAT+GGG - chr6.2:84271729-84271748 MS.gene05505:intron 35.0%
GGCCTAAAGCAATCTTTAAA+GGG - chr6.2:84274903-84274922 MS.gene05505:intron 35.0%
GGTAGTTCAATACATACTCT+AGG + chr6.2:84272225-84272244 None:intergenic 35.0%
GTAATGTACACACATCAGAT+TGG - chr6.2:84274468-84274487 MS.gene05505:intron 35.0%
TATCAGCCAAAGTATAAGCA+AGG + chr6.2:84271728-84271747 None:intergenic 35.0%
TCCTTTCCAGAAAACCTAAT+AGG - chr6.2:84272326-84272345 MS.gene05505:intron 35.0%
TCTCGGTTAGAAATATGGTT+TGG - chr6.2:84274551-84274570 MS.gene05505:CDS 35.0%
TGATGTCTTAAAAATGCAGG+GGG + chr6.2:84274704-84274723 None:intergenic 35.0%
TGCTTATACTTTGGCTGATA+TGG - chr6.2:84271728-84271747 MS.gene05505:intron 35.0%
TTATGATCAACTGCAGACAA+TGG - chr6.2:84275254-84275273 MS.gene05505:intron 35.0%
TTTAAACAGGATGAATGGAC+GGG - chr6.2:84274336-84274355 MS.gene05505:intron 35.0%
TTTCAATAACATGGCCTGAT+GGG - chr6.2:84274436-84274455 MS.gene05505:intron 35.0%
TTTCAGAAATGCATACCACT+CGG + chr6.2:84272057-84272076 None:intergenic 35.0%
! AGGATTGGTAAGTTATAACC+TGG + chr6.2:84272460-84272479 None:intergenic 35.0%
! ATCATCTGGAAGTACACTTT+CGG + chr6.2:84274768-84274787 None:intergenic 35.0%
! CAACACATACTCCTAGATTT+TGG + chr6.2:84273628-84273647 None:intergenic 35.0%
! GCATAACCTATTAGGTTTTC+TGG + chr6.2:84272335-84272354 None:intergenic 35.0%
! GGAACAGATATTGTTACTTG+CGG - chr6.2:84270945-84270964 MS.gene05505:intron 35.0%
! GGAATTATGGTCTTCTTTTC+TGG + chr6.2:84271924-84271943 None:intergenic 35.0%
! TCGATGAACGATAGTTTTTG+AGG + chr6.2:84272972-84272991 None:intergenic 35.0%
! TCGGATGTTTTCAAAGCTTA+AGG - chr6.2:84273007-84273026 MS.gene05505:intron 35.0%
! TCTTCAGGTTCAATGTAATC+AGG + chr6.2:84274390-84274409 None:intergenic 35.0%
! TTGGTTTCTTTTGGATTTGC+TGG - chr6.2:84271966-84271985 MS.gene05505:intron 35.0%
!! AAGTTTTTGCTTTGAATCGC+AGG - chr6.2:84271069-84271088 MS.gene05505:intron 35.0%
!! ACCTATTAGGTTTTCTGGAA+AGG + chr6.2:84272330-84272349 None:intergenic 35.0%
!! CCATTTGATGTTCTGAAGTT+TGG + chr6.2:84274628-84274647 None:intergenic 35.0%
!! TCAATACATACTCTAGGGTA+GGG + chr6.2:84272219-84272238 None:intergenic 35.0%
!! TTAAAGGGCCATTTTGCTTT+AGG - chr6.2:84274918-84274937 MS.gene05505:CDS 35.0%
!! TTCAATACATACTCTAGGGT+AGG + chr6.2:84272220-84272239 None:intergenic 35.0%
!!! GGTTTTAGTTGGTTTATCCT+TGG - chr6.2:84275029-84275048 MS.gene05505:intron 35.0%
!!! TGCATTTTAACTGTTGTGGT+AGG - chr6.2:84272496-84272515 MS.gene05505:intron 35.0%
AAGGAGCAATCTGCATCATA+TGG + chr6.2:84275236-84275255 None:intergenic 40.0%
AAGTTATCAGGAAGGCTTCA+TGG + chr6.2:84272766-84272785 None:intergenic 40.0%
ACATTGACATTCTTGACCCA+AGG + chr6.2:84271409-84271428 None:intergenic 40.0%
ACTCTAACCTACGTCAGATA+TGG + chr6.2:84271173-84271192 None:intergenic 40.0%
AGACATACAGTCGGTCTAAT+AGG + chr6.2:84273413-84273432 None:intergenic 40.0%
AGTAACACGAGACATACAGT+CGG + chr6.2:84273422-84273441 None:intergenic 40.0%
AGTTATCAGGAAGGCTTCAT+GGG + chr6.2:84272765-84272784 None:intergenic 40.0%
ATATCTGACGTAGGTTAGAG+TGG - chr6.2:84271172-84271191 MS.gene05505:intron 40.0%
ATCAACTGCAGACAATGGAA+CGG - chr6.2:84275259-84275278 MS.gene05505:intron 40.0%
ATGAAGCCTTCCTGATAACT+TGG - chr6.2:84272765-84272784 MS.gene05505:intron 40.0%
ATTACCTGACTAAACCCATC+AGG + chr6.2:84274453-84274472 None:intergenic 40.0%
CAATATGAGCCCAAGTTATC+AGG + chr6.2:84272778-84272797 None:intergenic 40.0%
CACGTAAAATTTGATTGCGG+TGG + chr6.2:84272845-84272864 None:intergenic 40.0%
CAGATCATTGATCCAGACTT+TGG - chr6.2:84270924-84270943 MS.gene05505:intron 40.0%
CATTCAACTCACTTTATGCC+AGG - chr6.2:84272439-84272458 MS.gene05505:CDS 40.0%
CATTCTCGCTCTCTTCTATA+GGG - chr6.2:84273857-84273876 MS.gene05505:intron 40.0%
CATTGACATTCTTGACCCAA+GGG + chr6.2:84271408-84271427 None:intergenic 40.0%
CCAACTAAAACCCGAACTTT+AGG + chr6.2:84275021-84275040 None:intergenic 40.0%
CTTGTCAAATGTCATCAAGC+AGG + chr6.2:84273691-84273710 None:intergenic 40.0%
GAAACGGCATAATTTCCCAT+TGG + chr6.2:84274420-84274439 None:intergenic 40.0%
GACATACAGTCGGTCTAATA+GGG + chr6.2:84273412-84273431 None:intergenic 40.0%
GACCTACGATAAATCAGTCA+AGG - chr6.2:84274155-84274174 MS.gene05505:intron 40.0%
GCAGGAATAGAATACCTTGT+TGG + chr6.2:84273673-84273692 None:intergenic 40.0%
GCATGTACGCTGTTCAATAA+AGG - chr6.2:84274664-84274683 MS.gene05505:intron 40.0%
GTCAGATATGGCTCAAACAA+TGG + chr6.2:84271161-84271180 None:intergenic 40.0%
GTTGTGGAAAAAGAAGCTCT+CGG + chr6.2:84272608-84272627 None:intergenic 40.0%
GTTTCAATAACATGGCCTGA+TGG - chr6.2:84274435-84274454 MS.gene05505:intron 40.0%
TAGGCCAGACTGAAAACTTT+GGG - chr6.2:84272808-84272827 MS.gene05505:CDS 40.0%
TAGTGACTCCAGAAACCATA+GGG + chr6.2:84272016-84272035 None:intergenic 40.0%
TATACTTCCGAAGTGGCTTT+GGG - chr6.2:84272723-84272742 MS.gene05505:intron 40.0%
TATCCATTTGGTAGAGGTTC+AGG - chr6.2:84273216-84273235 MS.gene05505:intron 40.0%
TCAGAACATCAAATGGCGTT+CGG - chr6.2:84274632-84274651 MS.gene05505:CDS 40.0%
TCATTCTCGCTCTCTTCTAT+AGG - chr6.2:84273856-84273875 MS.gene05505:intron 40.0%
TCATTTACCACGTCCTTGAT+CGG + chr6.2:84271130-84271149 None:intergenic 40.0%
TCGATGTTGCAAAAGGAGTT+CGG - chr6.2:84272988-84273007 MS.gene05505:intron 40.0%
TCGTTCATCGATGTTGCAAA+AGG - chr6.2:84272981-84273000 MS.gene05505:intron 40.0%
TGAAGCCTTCCTGATAACTT+GGG - chr6.2:84272766-84272785 MS.gene05505:intron 40.0%
TGAATACATGGGAGTCAAGT+TGG - chr6.2:84271947-84271966 MS.gene05505:intron 40.0%
TGTGCTAAAATACGCCAACA+AGG - chr6.2:84273656-84273675 MS.gene05505:intron 40.0%
TTAAACAGGATGAATGGACG+GGG - chr6.2:84274337-84274356 MS.gene05505:intron 40.0%
TTAGGCCAGACTGAAAACTT+TGG - chr6.2:84272807-84272826 MS.gene05505:CDS 40.0%
TTAGTGACTCCAGAAACCAT+AGG + chr6.2:84272017-84272036 None:intergenic 40.0%
TTGACTCCCATGTATTCAGT+TGG + chr6.2:84271945-84271964 None:intergenic 40.0%
TTGCAGATCGATAAAGCTCT+AGG - chr6.2:84270981-84271000 MS.gene05505:intron 40.0%
! GGCCCTTTAAAGATTGCTTT+AGG + chr6.2:84274908-84274927 None:intergenic 40.0%
! GTTGGTTAGAAGCATGAGAT+TGG + chr6.2:84273078-84273097 None:intergenic 40.0%
! TAGTTGGTTTATCCTTGGAC+CGG - chr6.2:84275034-84275053 MS.gene05505:intron 40.0%
! TGCCTTGACTGATTTATCGT+AGG + chr6.2:84274160-84274179 None:intergenic 40.0%
! TTGGAAGTATACTTCCGAAG+TGG - chr6.2:84272716-84272735 MS.gene05505:intron 40.0%
! TTTTCCACAACACATGTGTC+CGG - chr6.2:84272617-84272636 MS.gene05505:intron 40.0%
!! CACTTTGTTGTTGGAGTTGT+AGG - chr6.2:84273976-84273995 MS.gene05505:intron 40.0%
!! CCTAAAGTTCGGGTTTTAGT+TGG - chr6.2:84275018-84275037 MS.gene05505:intron 40.0%
!! GAACGATAGTTTTTGAGGAG+TGG + chr6.2:84272967-84272986 None:intergenic 40.0%
!! GGTGTACCGTTTTTAACAGA+AGG + chr6.2:84274855-84274874 None:intergenic 40.0%
!! TTTTAACTGTTGTGGTAGGC+TGG - chr6.2:84272500-84272519 MS.gene05505:intron 40.0%
!!! ATGTGTCATTTTGATGCCGA+TGG - chr6.2:84273183-84273202 MS.gene05505:intron 40.0%
!!! GGAGTCAAGTTGGTTTCTTT+TGG - chr6.2:84271957-84271976 MS.gene05505:intron 40.0%
!!! TCTTTTGGATTTGCTGGACA+AGG - chr6.2:84271972-84271991 MS.gene05505:intron 40.0%
AACTTCTCACTACTACCGAG+TGG - chr6.2:84272039-84272058 MS.gene05505:intron 45.0%
ACCTGAAGAAATTCGGCCAA+TGG - chr6.2:84274401-84274420 MS.gene05505:intron 45.0%
ACTCGGTAGTAGTGAGAAGT+TGG + chr6.2:84272040-84272059 None:intergenic 45.0%
AGCAAAAAGACCACATGCGT+CGG + chr6.2:84274957-84274976 None:intergenic 45.0%
AGTTGAATGTCTCCTGTTCC+CGG + chr6.2:84272428-84272447 None:intergenic 45.0%
ATCTTGGAAACATCGCCTTG+AGG + chr6.2:84273602-84273621 None:intergenic 45.0%
ATGAGCCCAAGTTATCAGGA+AGG + chr6.2:84272774-84272793 None:intergenic 45.0%
CAACAGTGAGACGGAATGAT+CGG - chr6.2:84274229-84274248 MS.gene05505:CDS 45.0%
CAAGATCAGACCAGTCAATC+GGG - chr6.2:84272551-84272570 MS.gene05505:intron 45.0%
CAGACAATGGAACGGTTAGT+TGG - chr6.2:84275267-84275286 MS.gene05505:intron 45.0%
CATATGACAGTTTGAGCAGC+AGG - chr6.2:84271360-84271379 MS.gene05505:intron 45.0%
CATTCCACTATCTCCAGAAG+CGG + chr6.2:84273561-84273580 None:intergenic 45.0%
CCAAGATCAGACCAGTCAAT+CGG - chr6.2:84272550-84272569 MS.gene05505:intron 45.0%
CCTGAAGAAATTCGGCCAAT+GGG - chr6.2:84274402-84274421 MS.gene05505:intron 45.0%
CTGACGTCATGTGAGTAGTT+CGG - chr6.2:84274822-84274841 MS.gene05505:intron 45.0%
CTGGTCTGATCTTGGCTTAA+GGG + chr6.2:84272545-84272564 None:intergenic 45.0%
CTTACCAACTATGGTCTCTC+CGG - chr6.2:84271794-84271813 MS.gene05505:CDS 45.0%
CTTTAGGCCTCATTCATCCT+TGG + chr6.2:84274892-84274911 None:intergenic 45.0%
GAAATCGTCTGTAAACCTGC+TGG + chr6.2:84271478-84271497 None:intergenic 45.0%
GATCCTGAACCTCTACCAAA+TGG + chr6.2:84273222-84273241 None:intergenic 45.0%
GGAAATTCCTCGGTATCAAC+TGG - chr6.2:84270867-84270886 MS.gene05505:intron 45.0%
GGAAGTTGCTCTGCGAATAA+CGG + chr6.2:84271457-84271476 None:intergenic 45.0%
GTATACTTCCGAAGTGGCTT+TGG - chr6.2:84272722-84272741 MS.gene05505:intron 45.0%
GTTTGAGCCATATCTGACGT+AGG - chr6.2:84271163-84271182 MS.gene05505:intron 45.0%
TAAACAGGATGAATGGACGG+GGG - chr6.2:84274338-84274357 MS.gene05505:intron 45.0%
TATCGCTGTATCCAGTTGCA+AGG - chr6.2:84271504-84271523 MS.gene05505:intron 45.0%
TGACGTCATGTGAGTAGTTC+GGG - chr6.2:84274823-84274842 MS.gene05505:intron 45.0%
TGGAAAAGCGGTCTACTTGT+CGG + chr6.2:84273887-84273906 None:intergenic 45.0%
TGGTCCAAGCTTACCAACTA+TGG - chr6.2:84271785-84271804 MS.gene05505:CDS 45.0%
TGTCTTAAAAATGCAGGGGG+TGG + chr6.2:84274701-84274720 None:intergenic 45.0%
TTCTCGACAACAGCTACACA+AGG + chr6.2:84273162-84273181 None:intergenic 45.0%
TTGCAGGTTGTTCAGCAGTT+TGG - chr6.2:84273365-84273384 MS.gene05505:intron 45.0%
! AAAAATTTGCAGGGGGGTGT+AGG - chr6.2:84271681-84271700 MS.gene05505:CDS 45.0%
! ACTGGTCTGATCTTGGCTTA+AGG + chr6.2:84272546-84272565 None:intergenic 45.0%
! ATACTTCCGAAGTGGCTTTG+GGG - chr6.2:84272724-84272743 MS.gene05505:intron 45.0%
! CCCATCCAGAAGTATACTTC+CGG + chr6.2:84272639-84272658 None:intergenic 45.0%
! CCGGAAGTATACTTCTGGAT+GGG - chr6.2:84272636-84272655 MS.gene05505:CDS 45.0%
! GTCGTCCAGAAGTATACTTC+TGG + chr6.2:84272680-84272699 None:intergenic 45.0%
! TCAGCCCAAAGTTTTCAGTC+TGG + chr6.2:84272815-84272834 None:intergenic 45.0%
! TCCGGAAGTATACTTCTGGA+TGG - chr6.2:84272635-84272654 MS.gene05505:CDS 45.0%
! TCTGCGAATAACGGTTTTGC+TGG + chr6.2:84271448-84271467 None:intergenic 45.0%
! TGTGTCCGGAAGTATACTTC+TGG - chr6.2:84272631-84272650 MS.gene05505:CDS 45.0%
! TTTTCCGGAGAGACCATAGT+TGG + chr6.2:84271801-84271820 None:intergenic 45.0%
!! AACTTTTTAGCCGACGCATG+TGG - chr6.2:84274944-84274963 MS.gene05505:intron 45.0%
!! AGATAGTGGAATGCCTGAAG+TGG - chr6.2:84273568-84273587 MS.gene05505:intron 45.0%
!! ATACATACTCTAGGGTAGGG+TGG + chr6.2:84272216-84272235 None:intergenic 45.0%
!! GAGACCATAGTTGGTAAGCT+TGG + chr6.2:84271792-84271811 None:intergenic 45.0%
!! GATCGATAAAGCTCTAGGAG+AGG - chr6.2:84270986-84271005 MS.gene05505:intron 45.0%
!! TTGAATCGCAGGTGTCGTTT+CGG - chr6.2:84271080-84271099 MS.gene05505:intron 45.0%
ACGTCAGATATGCACATCCG+CGG + chr6.2:84274809-84274828 None:intergenic 50.0%
ACTTCCGGACACATGTGTTG+TGG + chr6.2:84272624-84272643 None:intergenic 50.0%
AGGCTGGAATTTCACTCGCT+TGG - chr6.2:84272516-84272535 MS.gene05505:intron 50.0%
AGTCGAGCCAAGGATGAATG+AGG - chr6.2:84274882-84274901 MS.gene05505:intron 50.0%
ATCAAGCTGACCCGATTGAC+TGG + chr6.2:84272564-84272583 None:intergenic 50.0%
CAAGGACGTGCAATTATGCG+CGG - chr6.2:84271990-84272009 MS.gene05505:intron 50.0%
CACGTGTTGCCGAAAGTTTG+AGG + chr6.2:84271027-84271046 None:intergenic 50.0%
CCCATTGGCCGAATTTCTTC+AGG + chr6.2:84274405-84274424 None:intergenic 50.0%
CGCTTTCAACACGTCATCCT+CGG + chr6.2:84270898-84270917 None:intergenic 50.0%
GAGGAGATTCACCTTGCAAC+TGG + chr6.2:84271518-84271537 None:intergenic 50.0%
GCTGATATGGGTGCTAGAGT+TGG - chr6.2:84271741-84271760 MS.gene05505:intron 50.0%
GGGGATCTACAGTACAGATC+CGG + chr6.2:84275056-84275075 None:intergenic 50.0%
GTTGGAGTTGTAGGCACAAC+TGG - chr6.2:84273985-84274004 MS.gene05505:CDS 50.0%
GTTTGAGCAGCAGGCAAATG+AGG - chr6.2:84271369-84271388 MS.gene05505:intron 50.0%
TACACCAGCATGTCCGATCA+AGG - chr6.2:84271114-84271133 MS.gene05505:intron 50.0%
TACAGTACAGATCCGGTCCA+AGG + chr6.2:84275049-84275068 None:intergenic 50.0%
TAGTGGAATGCCTGAAGTGG+TGG - chr6.2:84273571-84273590 MS.gene05505:intron 50.0%
TCATTCCGTCTCACTGTTGC+AGG + chr6.2:84274228-84274247 None:intergenic 50.0%
TGCATCCTGCAACAGTGAGA+CGG - chr6.2:84274220-84274239 MS.gene05505:CDS 50.0%
TGGTAGAGGTTCAGGATCTC+AGG - chr6.2:84273224-84273243 MS.gene05505:intron 50.0%
TTGTCACAGCTATCCGCTTC+TGG - chr6.2:84273545-84273564 MS.gene05505:intron 50.0%
! CATTCATCCTTGGCTCGACT+CGG + chr6.2:84274882-84274901 None:intergenic 50.0%
! CCTTGTTATCGACATGCCTC+CGG - chr6.2:84272406-84272425 MS.gene05505:CDS 50.0%
! CTATCCGCTTCTGGAGATAG+TGG - chr6.2:84273554-84273573 MS.gene05505:intron 50.0%
! CTTGTTATCGACATGCCTCC+GGG - chr6.2:84272407-84272426 MS.gene05505:CDS 50.0%
! TCCCTGGTGGACCTAAAGTT+CGG - chr6.2:84275007-84275026 MS.gene05505:intron 50.0%
! TCGGCTTGATTTCAGCTCGA+AGG + chr6.2:84272589-84272608 None:intergenic 50.0%
! TGCGGCAGTCACTTTGTTGT+TGG - chr6.2:84273967-84273986 MS.gene05505:intron 50.0%
!! ATGGCCTGATGGGTTTAGTC+AGG - chr6.2:84274446-84274465 MS.gene05505:intron 50.0%
!! CCGATTGACTGGTCTGATCT+TGG + chr6.2:84272553-84272572 None:intergenic 50.0%
!! TACTTCCGAAGTGGCTTTGG+GGG - chr6.2:84272725-84272744 MS.gene05505:intron 50.0%
ACCCGAACTTTAGGTCCACC+AGG + chr6.2:84275012-84275031 None:intergenic 55.0%
ACGTCCTTGATCGGACATGC+TGG + chr6.2:84271121-84271140 None:intergenic 55.0%
AGCATGTCCGATCAAGGACG+TGG - chr6.2:84271120-84271139 MS.gene05505:intron 55.0%
CCCGAACTTTAGGTCCACCA+GGG + chr6.2:84275011-84275030 None:intergenic 55.0%
GAAGTGGTGGCAGATCCTCA+AGG - chr6.2:84273584-84273603 MS.gene05505:intron 55.0%
GAGGTTCAGGATCTCAGGCA+TGG - chr6.2:84273229-84273248 MS.gene05505:intron 55.0%
GGTATCAACTGGAACAGCCG+AGG - chr6.2:84270878-84270897 MS.gene05505:intron 55.0%
TGAATGTCTCCTGTTCCCGG+AGG + chr6.2:84272425-84272444 None:intergenic 55.0%
TGAGCAGCAGGCAAATGAGG+TGG - chr6.2:84271372-84271391 MS.gene05505:intron 55.0%
TGAGGATCTGCCACCACTTC+AGG + chr6.2:84273584-84273603 None:intergenic 55.0%
TGATCGGTCTGCTCAGAGTG+TGG - chr6.2:84274245-84274264 MS.gene05505:CDS 55.0%
TGCAATTATGCGCGGCCCTA+TGG - chr6.2:84271998-84272017 MS.gene05505:intron 55.0%
TTCGCAGAGCAACTTCCAGC+AGG - chr6.2:84271460-84271479 MS.gene05505:intron 55.0%
! CCCTGGTGGACCTAAAGTTC+GGG - chr6.2:84275008-84275027 MS.gene05505:intron 55.0%
! CCGGAGGCATGTCGATAACA+AGG + chr6.2:84272409-84272428 None:intergenic 55.0%
! GGCTGTTCCAGTTGATACCG+AGG + chr6.2:84270877-84270896 None:intergenic 55.0%
ATCGACATGCCTCCGGGAAC+AGG - chr6.2:84272413-84272432 MS.gene05505:CDS 60.0%
ATGCGCGGCCCTATGGTTTC+TGG - chr6.2:84272005-84272024 MS.gene05505:intron 60.0%
GCAGCAGGCAAATGAGGTGG+TGG - chr6.2:84271375-84271394 MS.gene05505:intron 60.0%
!! TTCCGAAGTGGCTTTGGGGG+CGG - chr6.2:84272728-84272747 MS.gene05505:intron 60.0%
ACCACAGCCGAGTCGAGCCA+AGG - chr6.2:84274872-84274891 MS.gene05505:intron 65.0%
TCCCGCCCCCAAAGCCACTT+CGG + chr6.2:84272733-84272752 None:intergenic 65.0%
! AGGTGGTGGCAGTGCTCCCT+TGG - chr6.2:84271389-84271408 MS.gene05505:intron 65.0%
! GGTGGTGGCAGTGCTCCCTT+GGG - chr6.2:84271390-84271409 MS.gene05505:intron 65.0%
!! TCCGAAGTGGCTTTGGGGGC+GGG - chr6.2:84272729-84272748 MS.gene05505:intron 65.0%
!! TCCTTGGCTCGACTCGGCTG+TGG + chr6.2:84274876-84274895 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 84270746 84275299 84270746 ID=MS.gene05505
chr6.2 mRNA 84270746 84275299 84270746 ID=MS.gene05505.t1;Parent=MS.gene05505
chr6.2 exon 84275296 84275299 84275296 ID=MS.gene05505.t1.exon1;Parent=MS.gene05505.t1
chr6.2 CDS 84275296 84275299 84275296 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84275038 84275180 84275038 ID=MS.gene05505.t1.exon2;Parent=MS.gene05505.t1
chr6.2 CDS 84275038 84275180 84275038 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84274904 84274954 84274904 ID=MS.gene05505.t1.exon3;Parent=MS.gene05505.t1
chr6.2 CDS 84274904 84274954 84274904 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84274520 84274675 84274520 ID=MS.gene05505.t1.exon4;Parent=MS.gene05505.t1
chr6.2 CDS 84274520 84274675 84274520 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84274209 84274352 84274209 ID=MS.gene05505.t1.exon5;Parent=MS.gene05505.t1
chr6.2 CDS 84274209 84274352 84274209 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84273985 84274127 84273985 ID=MS.gene05505.t1.exon6;Parent=MS.gene05505.t1
chr6.2 CDS 84273985 84274127 84273985 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84273585 84273654 84273585 ID=MS.gene05505.t1.exon7;Parent=MS.gene05505.t1
chr6.2 CDS 84273585 84273654 84273585 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84273017 84273112 84273017 ID=MS.gene05505.t1.exon8;Parent=MS.gene05505.t1
chr6.2 CDS 84273017 84273112 84273017 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84272800 84272889 84272800 ID=MS.gene05505.t1.exon9;Parent=MS.gene05505.t1
chr6.2 CDS 84272800 84272889 84272800 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84272621 84272674 84272621 ID=MS.gene05505.t1.exon10;Parent=MS.gene05505.t1
chr6.2 CDS 84272621 84272674 84272621 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84272368 84272491 84272368 ID=MS.gene05505.t1.exon11;Parent=MS.gene05505.t1
chr6.2 CDS 84272368 84272491 84272368 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84271779 84271903 84271779 ID=MS.gene05505.t1.exon12;Parent=MS.gene05505.t1
chr6.2 CDS 84271779 84271903 84271779 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84271578 84271700 84271578 ID=MS.gene05505.t1.exon13;Parent=MS.gene05505.t1
chr6.2 CDS 84271578 84271700 84271578 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
chr6.2 exon 84270746 84270799 84270746 ID=MS.gene05505.t1.exon14;Parent=MS.gene05505.t1
chr6.2 CDS 84270746 84270799 84270746 ID=cds.MS.gene05505.t1;Parent=MS.gene05505.t1
Gene Sequence

>MS.gene05505

ATGTGTGCGTAGTCTGTGTTTAAGTGCTTTAGACTTTTGAATGCTAAAAATTGAGACAAGTTAGATTGTGTATCAAGTTAAGATTTATAGTTTCATCTAATGTTTTCTTATATATGCAGTTGGAAATTCCTCGGTATCAACTGGAACAGCCGAGGATGACGTGTTGAAAGCGTTGTCTCAGATCATTGATCCAGACTTTGGAACAGATATTGTTACTTGCGGATTTGTGAAAGATTTGCAGATCGATAAAGCTCTAGGAGAGGTCTTAAAATCAAACGCCTCAAACTTTCGGCAACACGTGTGAATGACAATGTTCTTACAAGAAGTTTTTGCTTTGAATCGCAGGTGTCGTTTCGGTTAGAGCTCACTACACCAGCATGTCCGATCAAGGACGTGGTAAATGACACAATTGCCATTGTTTGAGCCATATCTGACGTAGGTTAGAGTGGTAGACTTTTGTTCTGTAAACTCATTACATATAGAAGGGATAATAAAAAATTAAAAATTGCATATATTTTCCATGATAAAGAAATGAATGTTTTGTAGTCGATTATGTATCTTTTCCAGTCTTGAGTTTCATGTAATTCTGGGAAACTAAAAAATGATTATATATGCATATGACAGTTTGAGCAGCAGGCAAATGAGGTGGTGGCAGTGCTCCCTTGGGTCAAGAATGTCAATGTTACGATGTCTGCGCAGCCAGCAAAACCGTTATTCGCAGAGCAACTTCCAGCAGGTTTACAGACGATTTCAAATATTATCGCTGTATCCAGTTGCAAGGTGAATCTCCTCATGATATATTGGTCATATTAAGTCGTTTGCGATAATTTTGGCTGCTTTCTTGTTAATATTTTTTTTTTCTTCCATAAATAGTTAATCTAATTACCATGATTTACATTTCGTCTCATGAATCGTGATTGAATTTTGTCAAAAATAAAAATTTGCAGGGGGGTGTAGGAAAATCAACTGTAGCAGTAAACCTTGCTTATACTTTGGCTGATATGGGTGCTAGAGTTGGTATATTTGATGCTGATATTTATGGTCCAAGCTTACCAACTATGGTCTCTCCGGAAAATCGAATATTAGAAATGGTAACATATGATAAACCATGTGTTTTTAAATGTATAATATAGGGAAGTACAAAAAACATGATTGTTTGAGTGTTGCTGCAGAATCCAGAAAAGAAGACCATAATTCCAACTGAATACATGGGAGTCAAGTTGGTTTCTTTTGGATTTGCTGGACAAGGACGTGCAATTATGCGCGGCCCTATGGTTTCTGGAGTCACTAACCAACTTCTCACTACTACCGAGTGGTATGCATTTCTGAAAAACATAAAAAAAAAGATATGCTATGCATAGAATAGGGAAAAAGTTACATGCTATATTGCCTTAACAAATCATGTCATTTAAAAAGATTCTGCATGAGATTTATGTGTTATGTTTTATGTTATTCAAATTTATTGGTCCACCCTACCCTAGAGTATGTATTGAACTACCTACTTGATGCTTTTTAAATTAACCACATTTATATTTTTTTTGACAGAATTAACCACATTTATATAATAATCTTTACTTTAGTCCTTTCCAGAAAACCTAATAGGTTATGCTTGATATGTAGTCTTGATTTGGTTTACAAAATGTAGGGGCGAGCTTGATTACCTTGTTATCGACATGCCTCCGGGAACAGGAGACATTCAACTCACTTTATGCCAGGTTATAACTTACCAATCCTTTAGTTTGTTTCACATTGCATTTTAACTGTTGTGGTAGGCTGGAATTTCACTCGCTTGGTCACCCTTAAGCCAAGATCAGACCAGTCAATCGGGTCAGCTTGATCACCTTCGAGCTGAAATCAAGCCGAGAGCTTCTTTTTCCACAACACATGTGTCCGGAAGTATACTTCTGGATGGGAAAAAACTGTATTTTTATCCAGAAGTATACTTCTGGACGACACAAAAAATGTTTCTTTTGGAAGTATACTTCCGAAGTGGCTTTGGGGGCGGGAAAAGAAGCTCCCATGAAGCCTTCCTGATAACTTGGGCTCATATTGAGCTGAAATTTAGGCCAGACTGAAAACTTTGGGCTGAAATATGGCCACCGCAATCAAATTTTACGTGTGAAGCCTATAGTGTAATTACTTTAACTACTTGCAATTCATTTTGACTTTGATTGTGTATTCTTATAGATAGTCCCATTAACTGCTGCTGTAATTGTTACCACTCCTCAAAAACTATCGTTCATCGATGTTGCAAAAGGAGTTCGGATGTTTTCAAAGCTTAAGGTGATTCTTCTACATATCAAAGACATAACTATTACATTTTGTTTTTCCAATCTCATGCTTCTAACCAACACATACTTGATACTATTCACATTTAATACTTATTTATATTATTGTGTTTATGTAAAAGGTACCTTGTGTAGCTGTTGTCGAGAACATGTGTCATTTTGATGCCGATGGAAAAAGATACTATCCATTTGGTAGAGGTTCAGGATCTCAGGCATGGATAACGTTTCTGAATTTTAACTTTTTGTTTTCTTAATCATATTTATTATATGATGCTTAATATAAAAACAATTATGTACTTTCTGTGACACATGTTTGATTGTTCGATCATATTTGCAGGTTGTTCAGCAGTTTGGAATACCGCATCTATTTGATCTCCCTATTAGACCGACTGTATGTCTCGTGTTACTTCATCTATTATACTCAAACCTTTAGTTTATTCTCTTCTCTCGATGTTTTTTGCTTGTTTCTATATTGCTAAATGCGAACTAAGATTTGAGTTTATTTGAACAATTGTCACAGCTATCCGCTTCTGGAGATAGTGGAATGCCTGAAGTGGTGGCAGATCCTCAAGGCGATGTTTCCAAGATATTCCAAAATCTAGGAGTATGTGTTGTGCAGCAGTGTGCTAAAATACGCCAACAAGGTATTCTATTCCTGCTTGATGACATTTGACAAGAAAATGCATACTCAAGCTAGATGTTCACCGAATGTAACTAGTTTTAAAGTTTATAATTCGTCAATCACAAAATCACTGCTCAATTTTCGGTAGTTGAAATGTTTACTTATTTTTCTCTTACTAATAAATCTTATCTTATGAATGTTCATTCTCGCTCTCTTCTATAGGGTTTTCCGACAAGTAGACCGCTTTTCCATTAAGTATATATGCAAAACTAAGTAGTCTGTATAACCCTGAATATTGCATAATGAAAAACTGCGGCAGTCACTTTGTTGTTGGAGTTGTAGGCACAACTGGTCGATCATTGTGTTCTTGTATGTGTTTATTGATCTAATACCTAATGCATCCGAATACAAATTTTTTCACTTTCTTCTAGCATTCATGCTTTTTCTAAGATTGATATTTTTTTTTTTTTGTTATTTTCAATTCAGTTTCAACAGCTGTGACCTACGATAAATCAGTCAAGGCAATTAGAGTAAAAGTACCAGATTCAGATGAAGAATTCTTTCTGCATCCTGCAACAGTGAGACGGAATGATCGGTCTGCTCAGAGTGTGGTATGTTGATATTTAAGAAAAATAAAAATAAAAATGCTGTTTATCCATCTCATTTGAAGCTAACTTTATTTTAAACAGGATGAATGGACGGGGGAGCAGAAATTGCAGTATACCGATATTCCTGATTACATTGAACCTGAAGAAATTCGGCCAATGGGAAATTATGCCGTTTCAATAACATGGCCTGATGGGTTTAGTCAGGTAATGTACACACATCAGATTGGACAGTTCCATTGAAAAAGAAAGCTTTAAACTGTATATTATTAGCATTAGCATATCAATTGTCTCGGTTAGAAATATGGTTTGGACTAAGCTTTATGTAACGAGAATAGCCTTCAAACCTAATATATGTGCTTGACCAAACTTCAGAACATCAAATGGCGTTCGGCACTGTCTAGCATGTACGCTGTTCAATAAAGGGATGAACTTTTCCACCCCCTGCATTTTTAAGACATCAAACATGGTTCCATAACTTTATTTTTGGACCATATAATTTGTCCGAAAGTGTACTTCCAGATGATACAAAAATTGTATTTTTTCCGCGGATGTGCATATCTGACGTCATGTGAGTAGTTCGGGAAAGTTCCTTCTGTTAAAAACGGTACACCACAGCCGAGTCGAGCCAAGGATGAATGAGGCCTAAAGCAATCTTTAAAGGGCCATTTTGCTTTAGGTTCAACTTTTTAGCCGACGCATGTGGTCTTTTTGCTTTGTAAAATGAGTAGCAATTACAATTTTTTTCCCTGGTGGACCTAAAGTTCGGGTTTTAGTTGGTTTATCCTTGGACCGGATCTGTACTGTAGATCCCCATTTGTTGACTGCTGATTTATCATCTTAAAAAAATATTAATGATAGCGATTTACCTTACTAACTTATAATCATAATCATTCCTAATTTTTTATTATAATACGTTTTAATTGATTTGTGCTATGTAATTATGCTATAAAGTTGATTTTGACATTTTTACCATATGATGCAGATTGCTCCTTATGATCAACTGCAGACAATGGAACGGTTAGTTGGTGTTTCTTGA

Protein sequence

>MS.gene05505.t1

MFGNSSVSTGTAEDDVLKALSQIIDPDFGTDIVTCGFVKDLQIDKALGEVSFRLELTTPACPIKDVFEQQANEVVAVLPWVKNVNVTMSAQPAKPLFAEQLPAGLQTISNIIAVSSCKGGVGKSTVAVNLAYTLADMGARVGIFDADIYGPSLPTMVSPENRILEMNPEKKTIIPTEYMGVKLVSFGFAGQGRAIMRGPMVSGVTNQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQIVPLTAAVIVTTPQKLSFIDVAKGVRMFSKLKVPCVAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVVADPQGDVSKIFQNLGVCVVQQCAKIRQQVSTAVTYDKSVKAIRVKVPDSDEEFFLHPATVRRNDRSAQSVDEWTGEQKLQYTDIPDYIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLQTMERLVGVS