Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66160.t1 | XP_003600249.2 | 97 | 435 | 10 | 3 | 1 | 435 | 1 | 432 | 3.40E-219 | 770.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66160.t1 | G7J1I7 | 97.0 | 435 | 10 | 3 | 1 | 435 | 1 | 432 | 2.5e-219 | 770.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058996 | MS.gene66160 | 0.802798 | 4.73E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038202 | MS.gene66160 | PPI |
| MS.gene66160 | MS.gene016987 | PPI |
| MS.gene66160 | MS.gene70895 | PPI |
| MS.gene66160 | MS.gene038143 | PPI |
| MS.gene66160 | MS.gene038142 | PPI |
| MS.gene66160 | MS.gene47603 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66160.t1 | MTR_3g055960 | 98.161 | 435 | 5 | 3 | 1 | 435 | 1 | 432 | 0.0 | 864 |
| MS.gene66160.t1 | MTR_5g094340 | 71.954 | 435 | 102 | 8 | 3 | 435 | 1 | 417 | 0.0 | 606 |
| MS.gene66160.t1 | MTR_5g089720 | 37.381 | 420 | 210 | 10 | 55 | 435 | 32 | 437 | 3.48e-81 | 257 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66160.t1 | AT5G55530 | 56.522 | 437 | 154 | 9 | 3 | 435 | 1 | 405 | 1.85e-157 | 451 |
| MS.gene66160.t1 | AT5G55530 | 56.522 | 437 | 154 | 9 | 3 | 435 | 1 | 405 | 1.85e-157 | 451 |
| MS.gene66160.t1 | AT5G55530 | 56.522 | 437 | 154 | 9 | 3 | 435 | 1 | 405 | 1.85e-157 | 451 |
| MS.gene66160.t1 | AT1G50570 | 53.904 | 397 | 150 | 9 | 42 | 435 | 22 | 388 | 5.25e-127 | 373 |
| MS.gene66160.t1 | AT1G50570 | 53.904 | 397 | 150 | 9 | 42 | 435 | 22 | 388 | 5.25e-127 | 373 |
| MS.gene66160.t1 | AT5G12300 | 46.154 | 195 | 88 | 5 | 58 | 243 | 21 | 207 | 1.96e-53 | 183 |
| MS.gene66160.t1 | AT5G12300 | 44.872 | 78 | 28 | 2 | 373 | 435 | 297 | 374 | 4.51e-12 | 67.8 |
Find 102 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTCTAGTTTACCATTC+TGG | 0.234179 | 3.3:-45505808 | None:intergenic |
| TTAATGGTTTCCGAATATTT+TGG | 0.254413 | 3.3:+45506052 | MS.gene66160:CDS |
| CCAAGTCATGAACAAGTTTC+AGG | 0.260250 | 3.3:+45506316 | MS.gene66160:CDS |
| GATCTGTTTCATTCTCCTTC+AGG | 0.261707 | 3.3:+45505851 | MS.gene66160:CDS |
| TGGTCTTCGTTTGCAATCTT+AGG | 0.278614 | 3.3:-45506028 | None:intergenic |
| TGCAAACGAAGACCACTTAA+TGG | 0.284606 | 3.3:+45506036 | MS.gene66160:CDS |
| ACAATCTTCGTCTCAATGTT+TGG | 0.296293 | 3.3:+45505675 | MS.gene66160:CDS |
| ATTGACTTCAATGTCCTTAG+AGG | 0.297181 | 3.3:-45505453 | None:intergenic |
| GTCTCTACTAAGACCATTAA+TGG | 0.304090 | 3.3:+45505626 | MS.gene66160:CDS |
| GTTCCTTCCACCTCCATTAA+TGG | 0.307297 | 3.3:-45505639 | None:intergenic |
| TGAGTCATTGGCCAGAGATT+TGG | 0.310125 | 3.3:+45505985 | MS.gene66160:CDS |
| CAATTACTGTTGTATGATCA+TGG | 0.343347 | 3.3:+45505331 | None:intergenic |
| TGCTGAACCATCTGCGGCTC+TGG | 0.358153 | 3.3:-45506445 | None:intergenic |
| CCTGAAACTTGTTCATGACT+TGG | 0.362546 | 3.3:-45506316 | None:intergenic |
| GCACGAAATGCCAAAATATT+CGG | 0.365711 | 3.3:-45506062 | None:intergenic |
| CGGTGCTACACCTGATGTTA+TGG | 0.365739 | 3.3:+45505901 | MS.gene66160:CDS |
| TCGTTTGCAATCTTAGGATC+TGG | 0.377435 | 3.3:-45506022 | None:intergenic |
| CAATCTTCGTCTCAATGTTT+GGG | 0.390020 | 3.3:+45505676 | MS.gene66160:CDS |
| AAGCAACGGTCCTTCCTCTA+AGG | 0.393297 | 3.3:+45505439 | MS.gene66160:CDS |
| GAAAGTGAACCAACTACTTC+AGG | 0.397702 | 3.3:+45506547 | MS.gene66160:CDS |
| CCAAGCAGTGTGTCGACAAA+TGG | 0.402778 | 3.3:+45506226 | MS.gene66160:CDS |
| CTTGAATTTCCTGAAGTAGT+TGG | 0.407339 | 3.3:-45506556 | None:intergenic |
| CCCTTTAGAACCTCAGTCTT+GGG | 0.408315 | 3.3:+45505377 | MS.gene66160:CDS |
| CTGAAACTTGTTCATGACTT+GGG | 0.410201 | 3.3:-45506315 | None:intergenic |
| TTCACAGTCACAACAGGCTT+AGG | 0.428362 | 3.3:-45506415 | None:intergenic |
| CAAGCAGTGTGTCGACAAAT+GGG | 0.428739 | 3.3:+45506227 | MS.gene66160:CDS |
| TCTAAGGACATTGAAGTCAA+TGG | 0.431544 | 3.3:+45505455 | MS.gene66160:CDS |
| GCTTGATGTTTATATACATC+AGG | 0.433452 | 3.3:+45505520 | MS.gene66160:CDS |
| GTGAGCTATGGATGCTTAGC+AGG | 0.442573 | 3.3:+45505720 | MS.gene66160:CDS |
| CTCGGAAACATGTGAGTCAT+TGG | 0.443554 | 3.3:+45505973 | MS.gene66160:CDS |
| CCCAAGACTGAGGTTCTAAA+GGG | 0.451045 | 3.3:-45505377 | None:intergenic |
| GACTCAGTGCTCTGATAGCT+TGG | 0.460570 | 3.3:+45506090 | MS.gene66160:CDS |
| TATCTTGAAGATCAGTTGCT+TGG | 0.461888 | 3.3:+45505752 | MS.gene66160:CDS |
| CTAAGGACATTGAAGTCAAT+GGG | 0.464490 | 3.3:+45505456 | MS.gene66160:CDS |
| ACCCTTTAGAACCTCAGTCT+TGG | 0.466024 | 3.3:+45505376 | MS.gene66160:CDS |
| TCAATATTCACAGTCACAAC+AGG | 0.469854 | 3.3:-45506421 | None:intergenic |
| ACCCAAGACTGAGGTTCTAA+AGG | 0.472225 | 3.3:-45505378 | None:intergenic |
| GGAAGCTGGTGTTCGTCTTG+TGG | 0.480983 | 3.3:+45506141 | MS.gene66160:CDS |
| TGATGCTGAAAATCATAGTT+CGG | 0.482073 | 3.3:+45506120 | MS.gene66160:CDS |
| ATCTGCTATGCCGGGGAAAG+TGG | 0.488327 | 3.3:+45505928 | MS.gene66160:CDS |
| TATGGCAATATCTGCTATGC+CGG | 0.490303 | 3.3:+45505919 | MS.gene66160:CDS |
| TGCGCAAGTGGAACCTCCTA+AGG | 0.490411 | 3.3:+45506192 | MS.gene66160:CDS |
| TAGAACCTCAGTCTTGGGTG+AGG | 0.492450 | 3.3:+45505382 | MS.gene66160:CDS |
| CTTGGTGGAGACTCAACCTT+AGG | 0.499060 | 3.3:-45506208 | None:intergenic |
| GCAGATATTGCCATAACATC+AGG | 0.499230 | 3.3:-45505911 | None:intergenic |
| ATGGCAATATCTGCTATGCC+GGG | 0.503138 | 3.3:+45505920 | MS.gene66160:CDS |
| TCACAGTCACAACAGGCTTA+GGG | 0.508245 | 3.3:-45506414 | None:intergenic |
| CCATTTGTCGACACACTGCT+TGG | 0.508473 | 3.3:-45506226 | None:intergenic |
| AGAGCCGCAGATGGTTCAGC+AGG | 0.512099 | 3.3:+45506447 | MS.gene66160:CDS |
| ATGTTTATATACATCAGGCT+AGG | 0.518850 | 3.3:+45505525 | MS.gene66160:CDS |
| GAAAATCATAGTTCGGAAGC+TGG | 0.519872 | 3.3:+45506127 | MS.gene66160:CDS |
| AGCGAAAATGAAGCTTCCTA+TGG | 0.519913 | 3.3:+45506519 | MS.gene66160:CDS |
| GGGTTAGCGTTCTTAGTTTG+CGG | 0.519999 | 3.3:-45506595 | None:intergenic |
| AGGGTGATACAACAGATTGT+GGG | 0.523722 | 3.3:-45505358 | None:intergenic |
| AAGGGTGATACAACAGATTG+TGG | 0.527553 | 3.3:-45505359 | None:intergenic |
| CGTCTCTCAAATGTGAGCTA+TGG | 0.528137 | 3.3:+45505708 | MS.gene66160:CDS |
| ACTAAGACCATTAATGGAGG+TGG | 0.529485 | 3.3:+45505632 | MS.gene66160:CDS |
| AATATTCGGAAACCATTAAG+TGG | 0.538265 | 3.3:-45506048 | None:intergenic |
| ACATGTGTAGCCACTTTCCC+CGG | 0.538816 | 3.3:-45505938 | None:intergenic |
| TGAAACTTGTTCATGACTTG+GGG | 0.539460 | 3.3:-45506314 | None:intergenic |
| GGCTACACATGTCACTCAGC+AGG | 0.540185 | 3.3:+45505949 | MS.gene66160:CDS |
| CTCTGCTTCCATAATAGACA+CGG | 0.542849 | 3.3:-45506618 | None:intergenic |
| GGTGGAGACTCAACCTTAGG+AGG | 0.548492 | 3.3:-45506205 | None:intergenic |
| TTTGTCGACACACTGCTTGG+TGG | 0.552483 | 3.3:-45506223 | None:intergenic |
| GGTTCACTTTCAATGTCCAT+AGG | 0.554954 | 3.3:-45506535 | None:intergenic |
| TCTGAGCTTTCATGAGCAGA+AGG | 0.558176 | 3.3:-45506259 | None:intergenic |
| CGAAGATTGTCGTTAAACAC+AGG | 0.561622 | 3.3:-45505662 | None:intergenic |
| AAGCACTCCAACGCATTCCT+CGG | 0.564278 | 3.3:-45505501 | None:intergenic |
| CAGTGGTGAGTCTGCGCAAG+TGG | 0.564989 | 3.3:+45506180 | MS.gene66160:CDS |
| TGTTTATATACATCAGGCTA+GGG | 0.568066 | 3.3:+45505526 | MS.gene66160:CDS |
| TAGCATAAACATCTTGCTTG+TGG | 0.568663 | 3.3:-45505571 | None:intergenic |
| ACTTCAATGTCCTTAGAGGA+AGG | 0.576019 | 3.3:-45505449 | None:intergenic |
| TGTAGCACCGGTGTAAGCAA+TGG | 0.580116 | 3.3:-45505888 | None:intergenic |
| CAATTGTCCATTGCTTACAC+CGG | 0.580933 | 3.3:+45505881 | MS.gene66160:CDS |
| GGAAGGACCGTTGCTTTGTG+TGG | 0.589066 | 3.3:-45505432 | None:intergenic |
| AGAACCTCAGTCTTGGGTGA+GGG | 0.590332 | 3.3:+45505383 | MS.gene66160:CDS |
| AACTATCATGTCAAATGCCG+AGG | 0.594132 | 3.3:+45505484 | MS.gene66160:CDS |
| ACATGTCACTCAGCAGGACT+CGG | 0.594812 | 3.3:+45505955 | MS.gene66160:CDS |
| TCAAATGCCGAGGAATGCGT+TGG | 0.596916 | 3.3:+45505494 | MS.gene66160:CDS |
| GGACATTGAAGTCAATGGGA+AGG | 0.601234 | 3.3:+45505460 | MS.gene66160:CDS |
| CATAACATCAGGTGTAGCAC+CGG | 0.601546 | 3.3:-45505900 | None:intergenic |
| TCAGAAGTGCTAGTCCAGAA+TGG | 0.601594 | 3.3:+45505794 | MS.gene66160:CDS |
| TCTGCTTCCATAATAGACAC+GGG | 0.601885 | 3.3:-45506617 | None:intergenic |
| GACAATTGAACAAAACCTGA+AGG | 0.605270 | 3.3:-45505866 | None:intergenic |
| TATTGAGCCAGAGCCGCAGA+TGG | 0.613301 | 3.3:+45506438 | MS.gene66160:CDS |
| ATATCCTGCTGAACCATCTG+CGG | 0.615970 | 3.3:-45506451 | None:intergenic |
| ATCACTCGGAACAACACTTG+AGG | 0.627514 | 3.3:-45506386 | None:intergenic |
| CTGCTTCCATAATAGACACG+GGG | 0.629788 | 3.3:-45506616 | None:intergenic |
| GGGTGATACAACAGATTGTG+GGG | 0.631149 | 3.3:-45505357 | None:intergenic |
| GGCTTAGGGAATAAATCACT+CGG | 0.633496 | 3.3:-45506400 | None:intergenic |
| AGACCATTAATGGAGGTGGA+AGG | 0.648853 | 3.3:+45505636 | MS.gene66160:CDS |
| TGGACTAGCACTTCTGACAA+CGG | 0.653528 | 3.3:-45505788 | None:intergenic |
| TGGCAATATCTGCTATGCCG+GGG | 0.667680 | 3.3:+45505921 | MS.gene66160:CDS |
| ACAAGTTTCAGGAACCAAAG+AGG | 0.670665 | 3.3:+45506327 | MS.gene66160:CDS |
| CTCACCCTCACCCAAGACTG+AGG | 0.674424 | 3.3:-45505387 | None:intergenic |
| GATGTTACCACACAAAGCAA+CGG | 0.679929 | 3.3:+45505425 | MS.gene66160:CDS |
| GAAGATTGTCGTTAAACACA+GGG | 0.680691 | 3.3:-45505661 | None:intergenic |
| AAGCAGTGTGTCGACAAATG+GGG | 0.683408 | 3.3:+45506228 | MS.gene66160:CDS |
| TCTACTAAGACCATTAATGG+AGG | 0.693051 | 3.3:+45505629 | MS.gene66160:CDS |
| GAAAGCTTCTCAGCATGCAG+TGG | 0.698296 | 3.3:+45506163 | MS.gene66160:CDS |
| TGAGCTATGGATGCTTAGCA+GGG | 0.703627 | 3.3:+45505721 | MS.gene66160:CDS |
| TGCTTCCATAATAGACACGG+GGG | 0.772529 | 3.3:-45506615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATGGTTTCCGAATATTT+TGG | + | chr3.3:45506052-45506071 | MS.gene66160:CDS | 25.0% |
| AAAAAAGTGGATGTCAAAGA+CGG | + | chr3.3:45506352-45506371 | MS.gene66160:CDS | 30.0% | |
| AACCAAAGAGGTAAAAAAAG+TGG | + | chr3.3:45506339-45506358 | MS.gene66160:CDS | 30.0% | |
| AATATTCGGAAACCATTAAG+TGG | - | chr3.3:45506051-45506070 | None:intergenic | 30.0% | |
| ATGTTTATATACATCAGGCT+AGG | + | chr3.3:45505525-45505544 | MS.gene66160:CDS | 30.0% | |
| GCTTGATGTTTATATACATC+AGG | + | chr3.3:45505520-45505539 | MS.gene66160:CDS | 30.0% | |
| TGATGCTGAAAATCATAGTT+CGG | + | chr3.3:45506120-45506139 | MS.gene66160:CDS | 30.0% | |
| TGTTTATATACATCAGGCTA+GGG | + | chr3.3:45505526-45505545 | MS.gene66160:CDS | 30.0% | |
| ! | CTCAATTTTATCCAAATCTC+TGG | - | chr3.3:45505999-45506018 | None:intergenic | 30.0% |
| !!! | ATCCACTTTTTTTACCTCTT+TGG | - | chr3.3:45506344-45506363 | None:intergenic | 30.0% |
| ACAATCTTCGTCTCAATGTT+TGG | + | chr3.3:45505675-45505694 | MS.gene66160:CDS | 35.0% | |
| CAATCTTCGTCTCAATGTTT+GGG | + | chr3.3:45505676-45505695 | MS.gene66160:CDS | 35.0% | |
| CTAAGGACATTGAAGTCAAT+GGG | + | chr3.3:45505456-45505475 | MS.gene66160:CDS | 35.0% | |
| CTTGAATTTCCTGAAGTAGT+TGG | - | chr3.3:45506559-45506578 | None:intergenic | 35.0% | |
| GAAGATTGTCGTTAAACACA+GGG | - | chr3.3:45505664-45505683 | None:intergenic | 35.0% | |
| GACAATTGAACAAAACCTGA+AGG | - | chr3.3:45505869-45505888 | None:intergenic | 35.0% | |
| GCACGAAATGCCAAAATATT+CGG | - | chr3.3:45506065-45506084 | None:intergenic | 35.0% | |
| GTCTCTACTAAGACCATTAA+TGG | + | chr3.3:45505626-45505645 | MS.gene66160:CDS | 35.0% | |
| TAGCATAAACATCTTGCTTG+TGG | - | chr3.3:45505574-45505593 | None:intergenic | 35.0% | |
| TATCTTGAAGATCAGTTGCT+TGG | + | chr3.3:45505752-45505771 | MS.gene66160:CDS | 35.0% | |
| TCAATATTCACAGTCACAAC+AGG | - | chr3.3:45506424-45506443 | None:intergenic | 35.0% | |
| TCTAAGGACATTGAAGTCAA+TGG | + | chr3.3:45505455-45505474 | MS.gene66160:CDS | 35.0% | |
| TCTACTAAGACCATTAATGG+AGG | + | chr3.3:45505629-45505648 | MS.gene66160:CDS | 35.0% | |
| ! | ATTGACTTCAATGTCCTTAG+AGG | - | chr3.3:45505456-45505475 | None:intergenic | 35.0% |
| ! | CTGAAACTTGTTCATGACTT+GGG | - | chr3.3:45506318-45506337 | None:intergenic | 35.0% |
| ! | CTTTCTCTAGTTTACCATTC+TGG | - | chr3.3:45505811-45505830 | None:intergenic | 35.0% |
| ! | TGAAACTTGTTCATGACTTG+GGG | - | chr3.3:45506317-45506336 | None:intergenic | 35.0% |
| ! | TGTTTTCTGGATTACTTGTC+AGG | - | chr3.3:45505604-45505623 | None:intergenic | 35.0% |
| AACTATCATGTCAAATGCCG+AGG | + | chr3.3:45505484-45505503 | MS.gene66160:CDS | 40.0% | |
| AAGGGTGATACAACAGATTG+TGG | - | chr3.3:45505362-45505381 | None:intergenic | 40.0% | |
| ACAAGTTTCAGGAACCAAAG+AGG | + | chr3.3:45506327-45506346 | MS.gene66160:CDS | 40.0% | |
| ACTAAGACCATTAATGGAGG+TGG | + | chr3.3:45505632-45505651 | MS.gene66160:CDS | 40.0% | |
| ACTTCAATGTCCTTAGAGGA+AGG | - | chr3.3:45505452-45505471 | None:intergenic | 40.0% | |
| AGCGAAAATGAAGCTTCCTA+TGG | + | chr3.3:45506519-45506538 | MS.gene66160:CDS | 40.0% | |
| AGGGTGATACAACAGATTGT+GGG | - | chr3.3:45505361-45505380 | None:intergenic | 40.0% | |
| CAATTGTCCATTGCTTACAC+CGG | + | chr3.3:45505881-45505900 | MS.gene66160:CDS | 40.0% | |
| CCAAGTCATGAACAAGTTTC+AGG | + | chr3.3:45506316-45506335 | MS.gene66160:CDS | 40.0% | |
| CGAAGATTGTCGTTAAACAC+AGG | - | chr3.3:45505665-45505684 | None:intergenic | 40.0% | |
| CTCTGCTTCCATAATAGACA+CGG | - | chr3.3:45506621-45506640 | None:intergenic | 40.0% | |
| GAAAATCATAGTTCGGAAGC+TGG | + | chr3.3:45506127-45506146 | MS.gene66160:CDS | 40.0% | |
| GAAAGTGAACCAACTACTTC+AGG | + | chr3.3:45506547-45506566 | MS.gene66160:CDS | 40.0% | |
| GATCTGTTTCATTCTCCTTC+AGG | + | chr3.3:45505851-45505870 | MS.gene66160:CDS | 40.0% | |
| GATGTTACCACACAAAGCAA+CGG | + | chr3.3:45505425-45505444 | MS.gene66160:CDS | 40.0% | |
| GCAGATATTGCCATAACATC+AGG | - | chr3.3:45505914-45505933 | None:intergenic | 40.0% | |
| GGCTTAGGGAATAAATCACT+CGG | - | chr3.3:45506403-45506422 | None:intergenic | 40.0% | |
| GGTTCACTTTCAATGTCCAT+AGG | - | chr3.3:45506538-45506557 | None:intergenic | 40.0% | |
| TATGGCAATATCTGCTATGC+CGG | + | chr3.3:45505919-45505938 | MS.gene66160:CDS | 40.0% | |
| TCGTTTGCAATCTTAGGATC+TGG | - | chr3.3:45506025-45506044 | None:intergenic | 40.0% | |
| TCTGCTTCCATAATAGACAC+GGG | - | chr3.3:45506620-45506639 | None:intergenic | 40.0% | |
| TGCAAACGAAGACCACTTAA+TGG | + | chr3.3:45506036-45506055 | MS.gene66160:CDS | 40.0% | |
| TGGTCTTCGTTTGCAATCTT+AGG | - | chr3.3:45506031-45506050 | None:intergenic | 40.0% | |
| ! | CCTGAAACTTGTTCATGACT+TGG | - | chr3.3:45506319-45506338 | None:intergenic | 40.0% |
| !! | TTAGTAGAGACGCTGTTTTC+TGG | - | chr3.3:45505617-45505636 | None:intergenic | 40.0% |
| !!! | ATATTTTGGCATTTCGTGCG+AGG | + | chr3.3:45506066-45506085 | MS.gene66160:CDS | 40.0% |
| !!! | TCAGTTGCTTGGTTTTGCTT+TGG | + | chr3.3:45505763-45505782 | MS.gene66160:CDS | 40.0% |
| AGACCATTAATGGAGGTGGA+AGG | + | chr3.3:45505636-45505655 | MS.gene66160:CDS | 45.0% | |
| ATATCCTGCTGAACCATCTG+CGG | - | chr3.3:45506454-45506473 | None:intergenic | 45.0% | |
| ATCACTCGGAACAACACTTG+AGG | - | chr3.3:45506389-45506408 | None:intergenic | 45.0% | |
| ATGGCAATATCTGCTATGCC+GGG | + | chr3.3:45505920-45505939 | MS.gene66160:CDS | 45.0% | |
| CATAACATCAGGTGTAGCAC+CGG | - | chr3.3:45505903-45505922 | None:intergenic | 45.0% | |
| CGTCTCTCAAATGTGAGCTA+TGG | + | chr3.3:45505708-45505727 | MS.gene66160:CDS | 45.0% | |
| CTCGGAAACATGTGAGTCAT+TGG | + | chr3.3:45505973-45505992 | MS.gene66160:CDS | 45.0% | |
| CTGCTTCCATAATAGACACG+GGG | - | chr3.3:45506619-45506638 | None:intergenic | 45.0% | |
| GGACATTGAAGTCAATGGGA+AGG | + | chr3.3:45505460-45505479 | MS.gene66160:CDS | 45.0% | |
| GGGTGATACAACAGATTGTG+GGG | - | chr3.3:45505360-45505379 | None:intergenic | 45.0% | |
| GTTCCTTCCACCTCCATTAA+TGG | - | chr3.3:45505642-45505661 | None:intergenic | 45.0% | |
| TCACAGTCACAACAGGCTTA+GGG | - | chr3.3:45506417-45506436 | None:intergenic | 45.0% | |
| TCTGAGCTTTCATGAGCAGA+AGG | - | chr3.3:45506262-45506281 | None:intergenic | 45.0% | |
| TGAGCTATGGATGCTTAGCA+GGG | + | chr3.3:45505721-45505740 | MS.gene66160:CDS | 45.0% | |
| TGAGTCATTGGCCAGAGATT+TGG | + | chr3.3:45505985-45506004 | MS.gene66160:CDS | 45.0% | |
| TGCTTCCATAATAGACACGG+GGG | - | chr3.3:45506618-45506637 | None:intergenic | 45.0% | |
| TTCACAGTCACAACAGGCTT+AGG | - | chr3.3:45506418-45506437 | None:intergenic | 45.0% | |
| ! | AAGCAGTGTGTCGACAAATG+GGG | + | chr3.3:45506228-45506247 | MS.gene66160:CDS | 45.0% |
| ! | ACCCAAGACTGAGGTTCTAA+AGG | - | chr3.3:45505381-45505400 | None:intergenic | 45.0% |
| ! | CAAGCAGTGTGTCGACAAAT+GGG | + | chr3.3:45506227-45506246 | MS.gene66160:CDS | 45.0% |
| ! | GGGTTAGCGTTCTTAGTTTG+CGG | - | chr3.3:45506598-45506617 | None:intergenic | 45.0% |
| !! | ACCCTTTAGAACCTCAGTCT+TGG | + | chr3.3:45505376-45505395 | MS.gene66160:CDS | 45.0% |
| !! | CCCAAGACTGAGGTTCTAAA+GGG | - | chr3.3:45505380-45505399 | None:intergenic | 45.0% |
| !! | CCCTTTAGAACCTCAGTCTT+GGG | + | chr3.3:45505377-45505396 | MS.gene66160:CDS | 45.0% |
| !! | TCAGAAGTGCTAGTCCAGAA+TGG | + | chr3.3:45505794-45505813 | MS.gene66160:CDS | 45.0% |
| !! | TGGACTAGCACTTCTGACAA+CGG | - | chr3.3:45505791-45505810 | None:intergenic | 45.0% |
| AAGCAACGGTCCTTCCTCTA+AGG | + | chr3.3:45505439-45505458 | MS.gene66160:CDS | 50.0% | |
| AAGCACTCCAACGCATTCCT+CGG | - | chr3.3:45505504-45505523 | None:intergenic | 50.0% | |
| ACATGTCACTCAGCAGGACT+CGG | + | chr3.3:45505955-45505974 | MS.gene66160:CDS | 50.0% | |
| AGAACCTCAGTCTTGGGTGA+GGG | + | chr3.3:45505383-45505402 | MS.gene66160:CDS | 50.0% | |
| CCATTTGTCGACACACTGCT+TGG | - | chr3.3:45506229-45506248 | None:intergenic | 50.0% | |
| CTTGGTGGAGACTCAACCTT+AGG | - | chr3.3:45506211-45506230 | None:intergenic | 50.0% | |
| GAAAGCTTCTCAGCATGCAG+TGG | + | chr3.3:45506163-45506182 | MS.gene66160:CDS | 50.0% | |
| GACTCAGTGCTCTGATAGCT+TGG | + | chr3.3:45506090-45506109 | MS.gene66160:CDS | 50.0% | |
| GCTAACCCCCGTGTCTATTA+TGG | + | chr3.3:45506610-45506629 | MS.gene66160:CDS | 50.0% | |
| GTGAGCTATGGATGCTTAGC+AGG | + | chr3.3:45505720-45505739 | MS.gene66160:CDS | 50.0% | |
| TAGAACCTCAGTCTTGGGTG+AGG | + | chr3.3:45505382-45505401 | MS.gene66160:CDS | 50.0% | |
| TCAAATGCCGAGGAATGCGT+TGG | + | chr3.3:45505494-45505513 | MS.gene66160:CDS | 50.0% | |
| TGGCAATATCTGCTATGCCG+GGG | + | chr3.3:45505921-45505940 | MS.gene66160:CDS | 50.0% | |
| TTTGTCGACACACTGCTTGG+TGG | - | chr3.3:45506226-45506245 | None:intergenic | 50.0% | |
| ! | ACATGTGTAGCCACTTTCCC+CGG | - | chr3.3:45505941-45505960 | None:intergenic | 50.0% |
| ! | CCAAGCAGTGTGTCGACAAA+TGG | + | chr3.3:45506226-45506245 | MS.gene66160:CDS | 50.0% |
| !! | CGGTGCTACACCTGATGTTA+TGG | + | chr3.3:45505901-45505920 | MS.gene66160:CDS | 50.0% |
| !! | TGTAGCACCGGTGTAAGCAA+TGG | - | chr3.3:45505891-45505910 | None:intergenic | 50.0% |
| ATCTGCTATGCCGGGGAAAG+TGG | + | chr3.3:45505928-45505947 | MS.gene66160:CDS | 55.0% | |
| GGAAGCTGGTGTTCGTCTTG+TGG | + | chr3.3:45506141-45506160 | MS.gene66160:CDS | 55.0% | |
| GGCTACACATGTCACTCAGC+AGG | + | chr3.3:45505949-45505968 | MS.gene66160:CDS | 55.0% | |
| GGTGGAGACTCAACCTTAGG+AGG | - | chr3.3:45506208-45506227 | None:intergenic | 55.0% | |
| TATTGAGCCAGAGCCGCAGA+TGG | + | chr3.3:45506438-45506457 | MS.gene66160:CDS | 55.0% | |
| TGCGCAAGTGGAACCTCCTA+AGG | + | chr3.3:45506192-45506211 | MS.gene66160:CDS | 55.0% | |
| ! | GGAAGGACCGTTGCTTTGTG+TGG | - | chr3.3:45505435-45505454 | None:intergenic | 55.0% |
| AGAGCCGCAGATGGTTCAGC+AGG | + | chr3.3:45506447-45506466 | MS.gene66160:CDS | 60.0% | |
| CAGTGGTGAGTCTGCGCAAG+TGG | + | chr3.3:45506180-45506199 | MS.gene66160:CDS | 60.0% | |
| CTCACCCTCACCCAAGACTG+AGG | - | chr3.3:45505390-45505409 | None:intergenic | 60.0% | |
| TGCTGAACCATCTGCGGCTC+TGG | - | chr3.3:45506448-45506467 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 45505344 | 45506651 | 45505344 | ID=MS.gene66160 |
| chr3.3 | mRNA | 45505344 | 45506651 | 45505344 | ID=MS.gene66160.t1;Parent=MS.gene66160 |
| chr3.3 | exon | 45505344 | 45506651 | 45505344 | ID=MS.gene66160.t1.exon1;Parent=MS.gene66160.t1 |
| chr3.3 | CDS | 45505344 | 45506651 | 45505344 | ID=cds.MS.gene66160.t1;Parent=MS.gene66160.t1 |
| Gene Sequence |
| Protein sequence |
