Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66267.t1 | XP_003631014.2 | 76.4 | 242 | 25 | 5 | 22 | 249 | 760 | 983 | 6.40E-88 | 334.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66267.t1 | Q9C5U0 | 56.2 | 224 | 64 | 7 | 33 | 249 | 864 | 1060 | 1.5e-53 | 211.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66267.t1 | G7LCC4 | 76.4 | 242 | 25 | 5 | 22 | 249 | 517 | 740 | 4.6e-88 | 334.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene66267 | 0.802115 | 6.54E-49 | -1.69E-46 |
| MS.gene051181 | MS.gene66267 | 0.811021 | 8.62E-51 | -1.69E-46 |
| MS.gene052037 | MS.gene66267 | 0.808966 | 2.39E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene66267 | 0.818762 | 1.66E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene66267 | 0.839575 | 1.46E-57 | -1.69E-46 |
| MS.gene056366 | MS.gene66267 | 0.845654 | 3.55E-59 | -1.69E-46 |
| MS.gene057021 | MS.gene66267 | 0.805713 | 1.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66267.t1 | MTR_8g106150 | 76.446 | 242 | 25 | 5 | 22 | 249 | 517 | 740 | 7.11e-117 | 355 |
| MS.gene66267.t1 | MTR_8g106150 | 76.446 | 242 | 25 | 5 | 22 | 249 | 760 | 983 | 4.21e-115 | 356 |
| MS.gene66267.t1 | MTR_8g106150 | 94.030 | 67 | 4 | 0 | 268 | 334 | 116 | 182 | 1.66e-32 | 128 |
| MS.gene66267.t1 | MTR_5g097410 | 43.498 | 223 | 92 | 5 | 38 | 249 | 1002 | 1201 | 8.83e-44 | 161 |
| MS.gene66267.t1 | MTR_5g097410 | 51.136 | 88 | 28 | 2 | 261 | 334 | 332 | 418 | 3.79e-17 | 83.2 |
| MS.gene66267.t1 | MTR_3g085130 | 44.498 | 209 | 86 | 4 | 44 | 248 | 627 | 809 | 1.81e-43 | 160 |
| MS.gene66267.t1 | MTR_3g085130 | 44.498 | 209 | 86 | 4 | 44 | 248 | 837 | 1019 | 2.88e-43 | 159 |
| MS.gene66267.t1 | MTR_3g085130 | 55.422 | 83 | 21 | 1 | 268 | 334 | 166 | 248 | 5.91e-18 | 85.5 |
| MS.gene66267.t1 | MTR_8g080770 | 43.541 | 209 | 88 | 4 | 44 | 248 | 773 | 955 | 3.67e-43 | 159 |
| MS.gene66267.t1 | MTR_8g080770 | 54.217 | 83 | 22 | 1 | 268 | 334 | 111 | 193 | 1.28e-17 | 84.3 |
| MS.gene66267.t1 | MTR_8g080770 | 43.541 | 209 | 88 | 4 | 44 | 248 | 664 | 846 | 4.65e-43 | 159 |
| MS.gene66267.t1 | MTR_8g080770 | 53.571 | 84 | 23 | 1 | 267 | 334 | 1 | 84 | 8.27e-18 | 85.1 |
| MS.gene66267.t1 | MTR_5g044100 | 43.284 | 201 | 60 | 6 | 3 | 198 | 72 | 223 | 1.21e-33 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66267.t1 | AT2G01830 | 56.250 | 224 | 64 | 7 | 33 | 249 | 841 | 1037 | 9.52e-67 | 227 |
| MS.gene66267.t1 | AT2G01830 | 77.941 | 68 | 14 | 1 | 268 | 334 | 181 | 248 | 7.69e-26 | 108 |
| MS.gene66267.t1 | AT2G01830 | 56.250 | 224 | 64 | 7 | 33 | 249 | 841 | 1037 | 9.52e-67 | 227 |
| MS.gene66267.t1 | AT2G01830 | 77.941 | 68 | 14 | 1 | 268 | 334 | 181 | 248 | 7.69e-26 | 108 |
| MS.gene66267.t1 | AT2G01830 | 56.250 | 224 | 64 | 7 | 33 | 249 | 841 | 1037 | 9.52e-67 | 227 |
| MS.gene66267.t1 | AT2G01830 | 77.941 | 68 | 14 | 1 | 268 | 334 | 181 | 248 | 7.69e-26 | 108 |
| MS.gene66267.t1 | AT2G01830 | 56.250 | 224 | 64 | 7 | 33 | 249 | 841 | 1037 | 9.52e-67 | 227 |
| MS.gene66267.t1 | AT2G01830 | 77.941 | 68 | 14 | 1 | 268 | 334 | 181 | 248 | 7.69e-26 | 108 |
| MS.gene66267.t1 | AT2G01830 | 56.250 | 224 | 64 | 7 | 33 | 249 | 853 | 1049 | 1.16e-66 | 226 |
| MS.gene66267.t1 | AT2G01830 | 77.941 | 68 | 14 | 1 | 268 | 334 | 193 | 260 | 7.57e-26 | 108 |
| MS.gene66267.t1 | AT2G01830 | 56.250 | 224 | 64 | 7 | 33 | 249 | 864 | 1060 | 1.43e-66 | 226 |
| MS.gene66267.t1 | AT2G01830 | 77.941 | 68 | 14 | 1 | 268 | 334 | 204 | 271 | 8.58e-26 | 108 |
| MS.gene66267.t1 | AT5G35750 | 47.727 | 220 | 85 | 5 | 42 | 252 | 967 | 1165 | 5.94e-51 | 182 |
| MS.gene66267.t1 | AT5G35750 | 58.025 | 81 | 20 | 1 | 268 | 334 | 308 | 388 | 2.04e-18 | 87.0 |
| MS.gene66267.t1 | AT1G27320 | 45.946 | 222 | 93 | 5 | 36 | 248 | 813 | 1016 | 1.96e-49 | 177 |
| MS.gene66267.t1 | AT1G27320 | 53.012 | 83 | 23 | 1 | 268 | 334 | 169 | 251 | 5.15e-17 | 82.8 |
Find 70 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTCCGTTTACCTATAT+TGG | 0.174752 | 6.4:+64231352 | MS.gene66267:CDS |
| AGCTTGCCTTCGGCAAGTTT+TGG | 0.225236 | 6.4:+64230622 | MS.gene66267:CDS |
| CAAGTTTGATGCTTGCTTCA+TGG | 0.232563 | 6.4:+64230838 | MS.gene66267:CDS |
| TTGAAGCAACTCGTCGAATT+CGG | 0.272691 | 6.4:+64231273 | MS.gene66267:CDS |
| TGAAGCAACTCGTCGAATTC+GGG | 0.321951 | 6.4:+64231274 | MS.gene66267:CDS |
| GATCTTCAGTGTGCGGCAAC+TGG | 0.379917 | 6.4:+64230459 | MS.gene66267:CDS |
| AAAGAGAGGCTTCACAGGTT+AGG | 0.389296 | 6.4:+64232110 | MS.gene66267:CDS |
| TCTGCTGTCATGGCCAATAT+AGG | 0.397938 | 6.4:-64231365 | None:intergenic |
| TGAACAATTCCTTCCTCAAA+AGG | 0.408776 | 6.4:-64231449 | None:intergenic |
| AAGAGAGGCTTCACAGGTTA+GGG | 0.436592 | 6.4:+64232111 | MS.gene66267:CDS |
| GAAGCCACCGAGAACTAGTA+TGG | 0.440321 | 6.4:+64230595 | MS.gene66267:CDS |
| GCAAAATCAGCACCACCCTT+TGG | 0.468680 | 6.4:+64231937 | MS.gene66267:CDS |
| CATGGGTTTGTGGAGAGGAC+GGG | 0.486989 | 6.4:+64230437 | MS.gene66267:CDS |
| GCTCCCACCATACTAGTTCT+CGG | 0.497505 | 6.4:-64230602 | None:intergenic |
| TGTGCATAGGCCACTCCACT+TGG | 0.498168 | 6.4:-64232022 | None:intergenic |
| TCATGGCCAATATAGGTAAA+CGG | 0.499301 | 6.4:-64231358 | None:intergenic |
| TCTTGTAACTTTGAAGCCAA+AGG | 0.501836 | 6.4:-64231953 | None:intergenic |
| AATGGAAAGAGAGGCTTCAC+AGG | 0.503470 | 6.4:+64232105 | MS.gene66267:CDS |
| CTTGTAACTTTGAAGCCAAA+GGG | 0.504290 | 6.4:-64231952 | None:intergenic |
| TGCACCGGTCATATTTGCTC+AGG | 0.519789 | 6.4:+64232141 | MS.gene66267:CDS |
| TCATGGGTTTGTGGAGAGGA+CGG | 0.522273 | 6.4:+64230436 | MS.gene66267:CDS |
| CGAACTGAAGTTGAACCATC+AGG | 0.523059 | 6.4:-64230680 | None:intergenic |
| ATGAAGAGTGTTTGAAATGT+GGG | 0.523905 | 6.4:+64231405 | MS.gene66267:CDS |
| AACACTCTTCATATGTAGCA+TGG | 0.525664 | 6.4:-64231394 | None:intergenic |
| GATGGAGAGGACGGCGAATG+AGG | 0.528403 | 6.4:+64231298 | MS.gene66267:CDS |
| GTAGCAAGAAGGATCATTTG+AGG | 0.530064 | 6.4:-64230509 | None:intergenic |
| ATGGATTACATCTGCTGTCA+TGG | 0.530208 | 6.4:-64231375 | None:intergenic |
| AACAGGCAAGAAGAGACAGC+CGG | 0.534721 | 6.4:+64230646 | MS.gene66267:CDS |
| AACTCGTCGAATTCGGGAGA+TGG | 0.539466 | 6.4:+64231280 | MS.gene66267:CDS |
| TGTTTGAAATGTGGGATGGA+TGG | 0.544805 | 6.4:+64231413 | MS.gene66267:CDS |
| GTTGTCAATGGAGTGACTGC+AGG | 0.548337 | 6.4:+64230737 | MS.gene66267:CDS |
| GTTAACAACTCTTTGTGCAT+AGG | 0.556014 | 6.4:-64232035 | None:intergenic |
| TACTAATATTTGTAGCAAGA+AGG | 0.556575 | 6.4:-64230520 | None:intergenic |
| GAGAAAGATTCATGGGTTTG+TGG | 0.557247 | 6.4:+64230427 | MS.gene66267:CDS |
| AGATTCATGGGTTTGTGGAG+AGG | 0.561266 | 6.4:+64230432 | MS.gene66267:CDS |
| TATGAAGAGTGTTTGAAATG+TGG | 0.566182 | 6.4:+64231404 | MS.gene66267:CDS |
| TAGGCCACTCCACTTGGTAG+CGG | 0.569336 | 6.4:-64232016 | None:intergenic |
| GTATGGTGGGAGCTTGCCTT+CGG | 0.571883 | 6.4:+64230612 | MS.gene66267:CDS |
| ACAGGCAAGAAGAGACAGCC+GGG | 0.572058 | 6.4:+64230647 | MS.gene66267:CDS |
| TATAAAGACAATGGAAAGAG+AGG | 0.575171 | 6.4:+64232096 | MS.gene66267:CDS |
| GTTTCCTGAGCAAATATGAC+CGG | 0.576507 | 6.4:-64232145 | None:intergenic |
| TGGTAGCGGCCTTTCGAAAG+CGG | 0.579688 | 6.4:-64232002 | None:intergenic |
| TAGAGTGGTTATAAAGACAA+TGG | 0.582498 | 6.4:+64232087 | MS.gene66267:CDS |
| CGAATGGTGAATGTAGTGAA+AGG | 0.586436 | 6.4:+64231324 | MS.gene66267:CDS |
| TATCATTGAATTTATCAGCA+AGG | 0.588047 | 6.4:-64231013 | None:intergenic |
| AGCAAGCATCAAACTTGTGA+GGG | 0.592861 | 6.4:-64230832 | None:intergenic |
| CTGTTCCCAAAACTTGCCGA+AGG | 0.596012 | 6.4:-64230628 | None:intergenic |
| CCACCGAGAACTAGTATGGT+GGG | 0.599265 | 6.4:+64230599 | MS.gene66267:CDS |
| GTCGAATTCGGGAGATGGAG+AGG | 0.601823 | 6.4:+64231285 | MS.gene66267:CDS |
| GTTTGAGAAGCAGCATAGAG+TGG | 0.605018 | 6.4:+64232072 | MS.gene66267:CDS |
| CCGGGAAAAGAGATGCCTGA+TGG | 0.609734 | 6.4:+64230665 | MS.gene66267:CDS |
| AAGCAAGCATCAAACTTGTG+AGG | 0.615739 | 6.4:-64230833 | None:intergenic |
| TTCGAAAGGCCGCTACCAAG+TGG | 0.617861 | 6.4:+64232007 | MS.gene66267:CDS |
| AGAGTGTTTGAAATGTGGGA+TGG | 0.624246 | 6.4:+64231409 | MS.gene66267:CDS |
| TGCACAAAGAGTTGTTAACT+CGG | 0.624623 | 6.4:+64232039 | MS.gene66267:CDS |
| CACTGCATCACTAAAACATG+CGG | 0.634162 | 6.4:-64230567 | None:intergenic |
| GGTTAGGGATGAGTATGCAC+CGG | 0.635635 | 6.4:+64232126 | MS.gene66267:CDS |
| CGGCTAGGACCGCTTTCGAA+AGG | 0.636060 | 6.4:+64231993 | MS.gene66267:CDS |
| AATTCGGGAGATGGAGAGGA+CGG | 0.638289 | 6.4:+64231289 | MS.gene66267:CDS |
| GCCACCGAGAACTAGTATGG+TGG | 0.639265 | 6.4:+64230598 | MS.gene66267:CDS |
| TTGTTAACTCGGAAAGAGAG+CGG | 0.640754 | 6.4:+64232050 | MS.gene66267:CDS |
| AAAATGGTGCTTCCAGCACA+GGG | 0.643044 | 6.4:+64230120 | None:intergenic |
| AAGGCCGCTACCAAGTGGAG+TGG | 0.643714 | 6.4:+64232012 | MS.gene66267:CDS |
| GTAACTTTGAAGCCAAAGGG+TGG | 0.650789 | 6.4:-64231949 | None:intergenic |
| TGCGGCAACTGGAAACAGAA+CGG | 0.653414 | 6.4:+64230470 | MS.gene66267:CDS |
| ACGGCGAATGAGGAGACGAA+TGG | 0.653590 | 6.4:+64231308 | MS.gene66267:CDS |
| AGGACGGGATCTTCAGTGTG+CGG | 0.664290 | 6.4:+64230452 | MS.gene66267:CDS |
| AATGTGAAGTGTGCAGACAG+CGG | 0.690458 | 6.4:+64230782 | MS.gene66267:CDS |
| TCAGTTCGAAGCCTTCTGTG+CGG | 0.711337 | 6.4:+64230695 | MS.gene66267:CDS |
| CCCACCATACTAGTTCTCGG+TGG | 0.729453 | 6.4:-64230599 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAATTTTTTTTTTTTTT+TGG | + | chr6.4:64230904-64230923 | MS.gene66267:intron | 0.0% |
| !! | ATTAAATGAGTTAAAATATT+TGG | + | chr6.4:64230367-64230386 | MS.gene66267:intron | 10.0% |
| !! | ATGATTTATGAAAAACAATA+TGG | - | chr6.4:64231232-64231251 | None:intergenic | 15.0% |
| !!! | TTTTTAGTGAATTAAAGTTA+AGG | + | chr6.4:64230184-64230203 | MS.gene66267:intron | 15.0% |
| !!! | TTTTTTTTTTAAATCTGCAA+AGG | - | chr6.4:64230956-64230975 | None:intergenic | 15.0% |
| !! | CAATGTCATTAATTACAAAA+TGG | - | chr6.4:64230161-64230180 | None:intergenic | 20.0% |
| !! | TCTCAACAAAAATAATATCA+GGG | - | chr6.4:64230411-64230430 | None:intergenic | 20.0% |
| !! | TTCTCAACAAAAATAATATC+AGG | - | chr6.4:64230412-64230431 | None:intergenic | 20.0% |
| !!! | ACTGTTAATTGAGTATTTTT+TGG | + | chr6.4:64231818-64231837 | MS.gene66267:intron | 20.0% |
| !!! | ATAAAAGTATCTGAGATTTT+AGG | + | chr6.4:64231739-64231758 | MS.gene66267:intron | 20.0% |
| !!! | CTGTTAATTGAGTATTTTTT+GGG | + | chr6.4:64231819-64231838 | MS.gene66267:intron | 20.0% |
| !!! | TTTCTGTGTAATTTTTGAAA+TGG | + | chr6.4:64231612-64231631 | MS.gene66267:intron | 20.0% |
| ! | AACAAACATAACATGTATAG+AGG | - | chr6.4:64231183-64231202 | None:intergenic | 25.0% |
| ! | AATAAAGAGAAAAGTGACAA+AGG | - | chr6.4:64231577-64231596 | None:intergenic | 25.0% |
| ! | ACAAACATAACATGTATAGA+GGG | - | chr6.4:64231182-64231201 | None:intergenic | 25.0% |
| ! | TACTAATATTTGTAGCAAGA+AGG | - | chr6.4:64230523-64230542 | None:intergenic | 25.0% |
| ! | TATCATTGAATTTATCAGCA+AGG | - | chr6.4:64231016-64231035 | None:intergenic | 25.0% |
| ! | TGAGTTAAAATATTTGGTTG+TGG | + | chr6.4:64230373-64230392 | MS.gene66267:intron | 25.0% |
| !! | AGAAACTTTTGCAGAATATA+CGG | + | chr6.4:64231973-64231992 | MS.gene66267:CDS | 25.0% |
| !! | CATGTACTTACATTATTTTC+AGG | + | chr6.4:64231249-64231268 | MS.gene66267:intron | 25.0% |
| !! | TGTATTAGTTAGTATTGAAC+TGG | + | chr6.4:64231524-64231543 | MS.gene66267:intron | 25.0% |
| !! | TTTTGTTGAGAAAGATTCAT+GGG | + | chr6.4:64230420-64230439 | MS.gene66267:CDS | 25.0% |
| !! | TTTTTGTTGAGAAAGATTCA+TGG | + | chr6.4:64230419-64230438 | MS.gene66267:CDS | 25.0% |
| !!! | GCACGAACTTTTTTATATAT+AGG | - | chr6.4:64231798-64231817 | None:intergenic | 25.0% |
| !!! | GTAATTTTTGAAATGGTCTT+AGG | + | chr6.4:64231619-64231638 | MS.gene66267:intron | 25.0% |
| !!! | TTGTTTTGTATGAGCATATA+TGG | + | chr6.4:64231492-64231511 | MS.gene66267:intron | 25.0% |
| CAACAAAAATAATATCAGGG+TGG | - | chr6.4:64230408-64230427 | None:intergenic | 30.0% | |
| GAAAGAGATTTAGTGTTAGT+TGG | + | chr6.4:64231881-64231900 | MS.gene66267:intron | 30.0% | |
| TAGAGTGGTTATAAAGACAA+TGG | + | chr6.4:64232087-64232106 | MS.gene66267:CDS | 30.0% | |
| TATAAAGACAATGGAAAGAG+AGG | + | chr6.4:64232096-64232115 | MS.gene66267:CDS | 30.0% | |
| TGAACTCTTCTTCATATCTA+TGG | - | chr6.4:64231849-64231868 | None:intergenic | 30.0% | |
| TGAATTCCGTTTACCTATAT+TGG | + | chr6.4:64231352-64231371 | MS.gene66267:CDS | 30.0% | |
| TTAAAATATTTGGTTGTGGC+AGG | + | chr6.4:64230377-64230396 | MS.gene66267:intron | 30.0% | |
| ! | ATTAGTTAGTATTGAACTGG+TGG | + | chr6.4:64231527-64231546 | MS.gene66267:intron | 30.0% |
| ! | ATTCGCTCCAAAAATTTTCA+AGG | - | chr6.4:64230765-64230784 | None:intergenic | 30.0% |
| ! | ATTTTCAAATGCCAGAAATG+GGG | + | chr6.4:64230861-64230880 | MS.gene66267:CDS | 30.0% |
| ! | GATTTTCAAATGCCAGAAAT+GGG | + | chr6.4:64230860-64230879 | MS.gene66267:CDS | 30.0% |
| ! | TTATGTCTCAAAACCTTTTG+AGG | + | chr6.4:64231436-64231455 | MS.gene66267:CDS | 30.0% |
| !! | ATGAAGAGTGTTTGAAATGT+GGG | + | chr6.4:64231405-64231424 | MS.gene66267:CDS | 30.0% |
| !! | ATTTTAGTGGTTGTTGTCAA+TGG | + | chr6.4:64230725-64230744 | MS.gene66267:CDS | 30.0% |
| !! | TATGAAGAGTGTTTGAAATG+TGG | + | chr6.4:64231404-64231423 | MS.gene66267:CDS | 30.0% |
| AACACTCTTCATATGTAGCA+TGG | - | chr6.4:64231397-64231416 | None:intergenic | 35.0% | |
| ATTAAAAACTTACCCTGTGC+TGG | - | chr6.4:64230135-64230154 | None:intergenic | 35.0% | |
| GAAGAAGAGTTCAGAGAAAT+AGG | + | chr6.4:64231856-64231875 | MS.gene66267:intron | 35.0% | |
| GTTAACAACTCTTTGTGCAT+AGG | - | chr6.4:64232038-64232057 | None:intergenic | 35.0% | |
| TCATGGCCAATATAGGTAAA+CGG | - | chr6.4:64231361-64231380 | None:intergenic | 35.0% | |
| TGAACAATTCCTTCCTCAAA+AGG | - | chr6.4:64231452-64231471 | None:intergenic | 35.0% | |
| TGCACAAAGAGTTGTTAACT+CGG | + | chr6.4:64232039-64232058 | MS.gene66267:CDS | 35.0% | |
| TGCTGTAATGTTACTGTACT+TGG | + | chr6.4:64231680-64231699 | MS.gene66267:intron | 35.0% | |
| ! | AAATTTTCATTCCGCACAGA+AGG | - | chr6.4:64230709-64230728 | None:intergenic | 35.0% |
| ! | CATCTAAAGTCACACATGAT+CGG | + | chr6.4:64230229-64230248 | MS.gene66267:intron | 35.0% |
| ! | GGATTTTCAAATGCCAGAAA+TGG | + | chr6.4:64230859-64230878 | MS.gene66267:CDS | 35.0% |
| ! | GTGCGGAATGAAAATTTTAG+TGG | + | chr6.4:64230712-64230731 | MS.gene66267:CDS | 35.0% |
| ! | TCTCAGATACTTTTATCTGC+TGG | - | chr6.4:64231735-64231754 | None:intergenic | 35.0% |
| ! | TTACGTGCATTTAACTTACG+TGG | - | chr6.4:64231040-64231059 | None:intergenic | 35.0% |
| ! | TTGCATTTGTTCTTGTTGTG+TGG | + | chr6.4:64230328-64230347 | MS.gene66267:intron | 35.0% |
| ! | TTTTCAAATGCCAGAAATGG+GGG | + | chr6.4:64230862-64230881 | MS.gene66267:CDS | 35.0% |
| !! | AGTGTTAGTTGGTGTTGTAA+TGG | + | chr6.4:64231892-64231911 | MS.gene66267:intron | 35.0% |
| !! | CTTGTAACTTTGAAGCCAAA+GGG | - | chr6.4:64231955-64231974 | None:intergenic | 35.0% |
| !! | GTGTTAGTTGGTGTTGTAAT+GGG | + | chr6.4:64231893-64231912 | MS.gene66267:intron | 35.0% |
| !! | TCTTGTAACTTTGAAGCCAA+AGG | - | chr6.4:64231956-64231975 | None:intergenic | 35.0% |
| !! | TTTTGAGGAAGGAATTGTTC+AGG | + | chr6.4:64231451-64231470 | MS.gene66267:CDS | 35.0% |
| !!! | TAGGCTAAGATGTTTTGGTT+TGG | + | chr6.4:64231638-64231657 | MS.gene66267:intron | 35.0% |
| AACAAACATACCCCCATTTC+TGG | - | chr6.4:64230875-64230894 | None:intergenic | 40.0% | |
| AAGCAAGCATCAAACTTGTG+AGG | - | chr6.4:64230836-64230855 | None:intergenic | 40.0% | |
| AGCAAGCATCAAACTTGTGA+GGG | - | chr6.4:64230835-64230854 | None:intergenic | 40.0% | |
| CAAGTTTGATGCTTGCTTCA+TGG | + | chr6.4:64230838-64230857 | MS.gene66267:CDS | 40.0% | |
| CACTGCATCACTAAAACATG+CGG | - | chr6.4:64230570-64230589 | None:intergenic | 40.0% | |
| CGAATGGTGAATGTAGTGAA+AGG | + | chr6.4:64231324-64231343 | MS.gene66267:CDS | 40.0% | |
| CGATCATGTGTGACTTTAGA+TGG | - | chr6.4:64230231-64230250 | None:intergenic | 40.0% | |
| GAGAAAGATTCATGGGTTTG+TGG | + | chr6.4:64230427-64230446 | MS.gene66267:CDS | 40.0% | |
| GTAGCAAGAAGGATCATTTG+AGG | - | chr6.4:64230512-64230531 | None:intergenic | 40.0% | |
| GTTTCCTGAGCAAATATGAC+CGG | - | chr6.4:64232148-64232167 | None:intergenic | 40.0% | |
| TTGAAGCAACTCGTCGAATT+CGG | + | chr6.4:64231273-64231292 | MS.gene66267:CDS | 40.0% | |
| TTGTTAACTCGGAAAGAGAG+CGG | + | chr6.4:64232050-64232069 | MS.gene66267:CDS | 40.0% | |
| ! | AATGCACGTAACTTGCATGT+TGG | + | chr6.4:64231049-64231068 | MS.gene66267:intron | 40.0% |
| ! | AGAGTGTTTGAAATGTGGGA+TGG | + | chr6.4:64231409-64231428 | MS.gene66267:CDS | 40.0% |
| ! | ATGGATTACATCTGCTGTCA+TGG | - | chr6.4:64231378-64231397 | None:intergenic | 40.0% |
| ! | CTTTTGCAGAATATACGGCT+AGG | + | chr6.4:64231978-64231997 | MS.gene66267:CDS | 40.0% |
| ! | GGTCTTAGGCTAAGATGTTT+TGG | + | chr6.4:64231633-64231652 | MS.gene66267:intron | 40.0% |
| ! | TGTTTGAAATGTGGGATGGA+TGG | + | chr6.4:64231413-64231432 | MS.gene66267:CDS | 40.0% |
| !! | GTCTCAAAACCTTTTGAGGA+AGG | + | chr6.4:64231440-64231459 | MS.gene66267:CDS | 40.0% |
| AAAGAGAGGCTTCACAGGTT+AGG | + | chr6.4:64232110-64232129 | MS.gene66267:CDS | 45.0% | |
| AAGAGAGGCTTCACAGGTTA+GGG | + | chr6.4:64232111-64232130 | MS.gene66267:CDS | 45.0% | |
| AATGGAAAGAGAGGCTTCAC+AGG | + | chr6.4:64232105-64232124 | MS.gene66267:CDS | 45.0% | |
| AATGTGAAGTGTGCAGACAG+CGG | + | chr6.4:64230782-64230801 | MS.gene66267:CDS | 45.0% | |
| AGATTCATGGGTTTGTGGAG+AGG | + | chr6.4:64230432-64230451 | MS.gene66267:CDS | 45.0% | |
| CGAACTGAAGTTGAACCATC+AGG | - | chr6.4:64230683-64230702 | None:intergenic | 45.0% | |
| GTTTGAGAAGCAGCATAGAG+TGG | + | chr6.4:64232072-64232091 | MS.gene66267:CDS | 45.0% | |
| TCTGCTGTCATGGCCAATAT+AGG | - | chr6.4:64231368-64231387 | None:intergenic | 45.0% | |
| TGAAGCAACTCGTCGAATTC+GGG | + | chr6.4:64231274-64231293 | MS.gene66267:CDS | 45.0% | |
| ! | GCAGGCGCCTTGAAAATTTT+TGG | + | chr6.4:64230755-64230774 | MS.gene66267:CDS | 45.0% |
| !! | GTAACTTTGAAGCCAAAGGG+TGG | - | chr6.4:64231952-64231971 | None:intergenic | 45.0% |
| AACAGGCAAGAAGAGACAGC+CGG | + | chr6.4:64230646-64230665 | MS.gene66267:CDS | 50.0% | |
| AACTCGTCGAATTCGGGAGA+TGG | + | chr6.4:64231280-64231299 | MS.gene66267:CDS | 50.0% | |
| AATTCGGGAGATGGAGAGGA+CGG | + | chr6.4:64231289-64231308 | MS.gene66267:CDS | 50.0% | |
| CCACCGAGAACTAGTATGGT+GGG | + | chr6.4:64230599-64230618 | MS.gene66267:CDS | 50.0% | |
| CTGTTCCCAAAACTTGCCGA+AGG | - | chr6.4:64230631-64230650 | None:intergenic | 50.0% | |
| GAAGCCACCGAGAACTAGTA+TGG | + | chr6.4:64230595-64230614 | MS.gene66267:CDS | 50.0% | |
| GCAAAATCAGCACCACCCTT+TGG | + | chr6.4:64231937-64231956 | MS.gene66267:CDS | 50.0% | |
| GGTTAGGGATGAGTATGCAC+CGG | + | chr6.4:64232126-64232145 | MS.gene66267:CDS | 50.0% | |
| GTTGTCAATGGAGTGACTGC+AGG | + | chr6.4:64230737-64230756 | MS.gene66267:CDS | 50.0% | |
| TCAGTTCGAAGCCTTCTGTG+CGG | + | chr6.4:64230695-64230714 | MS.gene66267:CDS | 50.0% | |
| TCATGGGTTTGTGGAGAGGA+CGG | + | chr6.4:64230436-64230455 | MS.gene66267:CDS | 50.0% | |
| TGCGGCAACTGGAAACAGAA+CGG | + | chr6.4:64230470-64230489 | MS.gene66267:CDS | 50.0% | |
| ! | AGCTTGCCTTCGGCAAGTTT+TGG | + | chr6.4:64230622-64230641 | MS.gene66267:CDS | 50.0% |
| ! | CCATCAGGCATCTCTTTTCC+CGG | - | chr6.4:64230668-64230687 | None:intergenic | 50.0% |
| ! | GCTCCCACCATACTAGTTCT+CGG | - | chr6.4:64230605-64230624 | None:intergenic | 50.0% |
| ! | GCTTGCCTTCGGCAAGTTTT+GGG | + | chr6.4:64230623-64230642 | MS.gene66267:CDS | 50.0% |
| ! | TGCACCGGTCATATTTGCTC+AGG | + | chr6.4:64232141-64232160 | MS.gene66267:CDS | 50.0% |
| !!! | CTTCGGCAAGTTTTGGGAAC+AGG | + | chr6.4:64230629-64230648 | MS.gene66267:CDS | 50.0% |
| ACAGGCAAGAAGAGACAGCC+GGG | + | chr6.4:64230647-64230666 | MS.gene66267:CDS | 55.0% | |
| ACGGCGAATGAGGAGACGAA+TGG | + | chr6.4:64231308-64231327 | MS.gene66267:CDS | 55.0% | |
| AGGACGGGATCTTCAGTGTG+CGG | + | chr6.4:64230452-64230471 | MS.gene66267:CDS | 55.0% | |
| CATGGGTTTGTGGAGAGGAC+GGG | + | chr6.4:64230437-64230456 | MS.gene66267:CDS | 55.0% | |
| CCGGGAAAAGAGATGCCTGA+TGG | + | chr6.4:64230665-64230684 | MS.gene66267:CDS | 55.0% | |
| GATCTTCAGTGTGCGGCAAC+TGG | + | chr6.4:64230459-64230478 | MS.gene66267:CDS | 55.0% | |
| GCCACCGAGAACTAGTATGG+TGG | + | chr6.4:64230598-64230617 | MS.gene66267:CDS | 55.0% | |
| GTCGAATTCGGGAGATGGAG+AGG | + | chr6.4:64231285-64231304 | MS.gene66267:CDS | 55.0% | |
| TAGGCCACTCCACTTGGTAG+CGG | - | chr6.4:64232019-64232038 | None:intergenic | 55.0% | |
| TGTGCATAGGCCACTCCACT+TGG | - | chr6.4:64232025-64232044 | None:intergenic | 55.0% | |
| TTCGAAAGGCCGCTACCAAG+TGG | + | chr6.4:64232007-64232026 | MS.gene66267:CDS | 55.0% | |
| ! | CCCACCATACTAGTTCTCGG+TGG | - | chr6.4:64230602-64230621 | None:intergenic | 55.0% |
| ! | GTATGGTGGGAGCTTGCCTT+CGG | + | chr6.4:64230612-64230631 | MS.gene66267:CDS | 55.0% |
| !! | TGGTAGCGGCCTTTCGAAAG+CGG | - | chr6.4:64232005-64232024 | None:intergenic | 55.0% |
| AAGGCCGCTACCAAGTGGAG+TGG | + | chr6.4:64232012-64232031 | MS.gene66267:CDS | 60.0% | |
| CGGCTAGGACCGCTTTCGAA+AGG | + | chr6.4:64231993-64232012 | MS.gene66267:CDS | 60.0% | |
| GATGGAGAGGACGGCGAATG+AGG | + | chr6.4:64231298-64231317 | MS.gene66267:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 64230123 | 64232180 | 64230123 | ID=MS.gene66267 |
| chr6.4 | mRNA | 64230123 | 64232180 | 64230123 | ID=MS.gene66267.t1;Parent=MS.gene66267 |
| chr6.4 | exon | 64230123 | 64230141 | 64230123 | ID=MS.gene66267.t1.exon1;Parent=MS.gene66267.t1 |
| chr6.4 | CDS | 64230123 | 64230141 | 64230123 | ID=cds.MS.gene66267.t1;Parent=MS.gene66267.t1 |
| chr6.4 | exon | 64230399 | 64230883 | 64230399 | ID=MS.gene66267.t1.exon2;Parent=MS.gene66267.t1 |
| chr6.4 | CDS | 64230399 | 64230883 | 64230399 | ID=cds.MS.gene66267.t1;Parent=MS.gene66267.t1 |
| chr6.4 | exon | 64230988 | 64231040 | 64230988 | ID=MS.gene66267.t1.exon3;Parent=MS.gene66267.t1 |
| chr6.4 | CDS | 64230988 | 64231040 | 64230988 | ID=cds.MS.gene66267.t1;Parent=MS.gene66267.t1 |
| chr6.4 | exon | 64231271 | 64231472 | 64231271 | ID=MS.gene66267.t1.exon4;Parent=MS.gene66267.t1 |
| chr6.4 | CDS | 64231271 | 64231472 | 64231271 | ID=cds.MS.gene66267.t1;Parent=MS.gene66267.t1 |
| chr6.4 | exon | 64231929 | 64232180 | 64231929 | ID=MS.gene66267.t1.exon5;Parent=MS.gene66267.t1 |
| chr6.4 | CDS | 64231929 | 64232180 | 64231929 | ID=cds.MS.gene66267.t1;Parent=MS.gene66267.t1 |
| Gene Sequence |
| Protein sequence |
