Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66455.t1 | XP_003589086.1 | 100 | 267 | 0 | 0 | 1 | 267 | 1 | 267 | 5.50E-151 | 543.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66455.t1 | A0A109QYD3 | 96.2 | 265 | 10 | 0 | 4 | 268 | 3 | 267 | 1.1e-147 | 523.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66455.t1 | G7ICD6 | 100.0 | 267 | 0 | 0 | 1 | 267 | 1 | 267 | 4.0e-151 | 543.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89421 | MS.gene66455 | PPI |
| MS.gene011748 | MS.gene66455 | PPI |
| MS.gene03694 | MS.gene66455 | PPI |
| MS.gene019036 | MS.gene66455 | PPI |
| MS.gene44503 | MS.gene66455 | PPI |
| MS.gene041911 | MS.gene66455 | PPI |
| MS.gene29395 | MS.gene66455 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66455.t1 | MTR_1g018320 | 99.627 | 268 | 1 | 0 | 1 | 268 | 1 | 268 | 0.0 | 556 |
| MS.gene66455.t1 | MTR_5g016150 | 57.831 | 249 | 103 | 2 | 8 | 255 | 6 | 253 | 2.66e-108 | 315 |
| MS.gene66455.t1 | MTR_4g095310 | 57.430 | 249 | 104 | 2 | 8 | 255 | 6 | 253 | 8.01e-108 | 313 |
| MS.gene66455.t1 | MTR_6g086560 | 43.750 | 256 | 141 | 3 | 10 | 263 | 21 | 275 | 4.08e-77 | 235 |
| MS.gene66455.t1 | MTR_3g045440 | 37.308 | 260 | 161 | 2 | 5 | 263 | 7 | 265 | 1.29e-71 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66455.t1 | AT3G03990 | 76.493 | 268 | 62 | 1 | 1 | 268 | 1 | 267 | 6.43e-156 | 435 |
| MS.gene66455.t1 | AT4G37470 | 54.217 | 249 | 112 | 2 | 8 | 255 | 6 | 253 | 4.68e-101 | 296 |
| MS.gene66455.t1 | AT3G24420 | 40.323 | 248 | 145 | 3 | 9 | 254 | 13 | 259 | 2.80e-72 | 223 |
Find 80 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATCTGAGAGGGATTCT+AGG | 0.307455 | 1.4:-4901393 | MS.gene66455:CDS |
| TTCTTACTTGGCTCATCAAC+TGG | 0.321228 | 1.4:-4901220 | MS.gene66455:CDS |
| TTTGAGTGCTCCTTCTTACT+TGG | 0.356624 | 1.4:-4901232 | MS.gene66455:CDS |
| ATATATCTCTCTTTGTTTCA+AGG | 0.366469 | 1.4:-4901428 | MS.gene66455:CDS |
| TTCTCCAAACTCATCCTTAT+CGG | 0.376252 | 1.4:-4901785 | MS.gene66455:CDS |
| GGCGAGAGACATGTCGGTTC+CGG | 0.382403 | 1.4:-4901337 | MS.gene66455:CDS |
| ACGGCGGTAATCAAAGTAAT+CGG | 0.390518 | 1.4:+4901943 | None:intergenic |
| ATGAGTTTGGAGAAGAGCTC+AGG | 0.397953 | 1.4:+4901794 | None:intergenic |
| GGCACCGATAAGGATGAGTT+TGG | 0.410969 | 1.4:+4901781 | None:intergenic |
| TTGTAGCTGCGGGTGAAGTA+AGG | 0.413149 | 1.4:+4902007 | None:intergenic |
| GCACTCAATGTCCGCGTAGA+AGG | 0.420226 | 1.4:-4902100 | MS.gene66455:CDS |
| GCACGCGCTGCCATGCTGAT+TGG | 0.438801 | 1.4:+4902032 | None:intergenic |
| GAAGAGTACGGTGCAGTGGC+TGG | 0.442043 | 1.4:-4901277 | MS.gene66455:CDS |
| CGGCGGTAATCAAAGTAATC+GGG | 0.456759 | 1.4:+4901944 | None:intergenic |
| ATCGTCTTCGCTCACGGCTT+CGG | 0.463258 | 1.4:-4902061 | MS.gene66455:CDS |
| CATTCCGATCATGGCGGAGA+TGG | 0.464700 | 1.4:+4901835 | None:intergenic |
| GAAACAAAGAGAGATATATC+TGG | 0.473936 | 1.4:+4901432 | None:intergenic |
| AGGGATTCTAGGACTGGTTA+AGG | 0.482320 | 1.4:-4901382 | MS.gene66455:CDS |
| GGAAGCTAGCATTCCGATCA+TGG | 0.490032 | 1.4:+4901826 | None:intergenic |
| CACTCCATCTCCGCCATGAT+CGG | 0.492864 | 1.4:-4901839 | MS.gene66455:CDS |
| GACATTGAGTGCGTCGAGGA+TGG | 0.507337 | 1.4:+4902111 | None:intergenic |
| GAGAATGACTTTGTAGCTGC+GGG | 0.519156 | 1.4:+4901997 | None:intergenic |
| CTCTATGACCTCGTTTGCGC+CGG | 0.520296 | 1.4:-4901977 | MS.gene66455:CDS |
| ATGTACGTCGCCACCGTCGC+CGG | 0.520997 | 1.4:+4901318 | None:intergenic |
| GAGTGACGTGGAGGGAATCA+AGG | 0.521478 | 1.4:+4901879 | None:intergenic |
| AGACATGTCGGTTCCGGCGA+CGG | 0.526809 | 1.4:-4901331 | MS.gene66455:CDS |
| ACCTTGTTGTATCATGCAAA+CGG | 0.527204 | 1.4:-4901358 | MS.gene66455:CDS |
| AACTATGAAGCGTGGGTGAA+CGG | 0.527608 | 1.4:-4901531 | MS.gene66455:CDS |
| AAATACATCGTCTTCGCTCA+CGG | 0.531057 | 1.4:-4902067 | MS.gene66455:CDS |
| GCGCTGCCATGCTGATTGGT+CGG | 0.531257 | 1.4:+4902036 | None:intergenic |
| ACCTTGGGGAGGCACCGATA+AGG | 0.531923 | 1.4:+4901771 | None:intergenic |
| AGTTGATGAGCCAAGTAAGA+AGG | 0.537021 | 1.4:+4901222 | None:intergenic |
| ACATCGGCCCCGACAGCCAG+TGG | 0.545877 | 1.4:+4901501 | None:intergenic |
| GAAAATTCTCGAACAGCTGT+CGG | 0.549866 | 1.4:+4901477 | None:intergenic |
| GTGCAGTGGCTGGACACGGA+GGG | 0.550308 | 1.4:-4901267 | MS.gene66455:CDS |
| GCATCTTGGCGGGAAGAGTA+CGG | 0.553116 | 1.4:-4901289 | MS.gene66455:CDS |
| GAAGAGCTCAGGGCGGCGAA+TGG | 0.553284 | 1.4:+4901805 | None:intergenic |
| TCCTTATCGGTGCCTCCCCA+AGG | 0.565234 | 1.4:-4901772 | MS.gene66455:intron |
| AATGTCCGCGTAGAAGGCTC+CGG | 0.565395 | 1.4:-4902094 | MS.gene66455:CDS |
| TCTGAGAGGGATTCTAGGAC+TGG | 0.566008 | 1.4:-4901388 | MS.gene66455:CDS |
| TACATGAAGGAGCATCTTGG+CGG | 0.568823 | 1.4:-4901300 | MS.gene66455:CDS |
| TAAGAAGGAGCACTCAAATG+AGG | 0.570745 | 1.4:+4901237 | None:intergenic |
| CATGTCGGTTCCGGCGACGG+TGG | 0.570777 | 1.4:-4901328 | MS.gene66455:CDS |
| GTAATCGGGGTTGACACTGC+CGG | 0.571888 | 1.4:+4901958 | None:intergenic |
| ACATGAAGGAGCATCTTGGC+GGG | 0.572349 | 1.4:-4901299 | MS.gene66455:CDS |
| TTACCACGGAGGATTCGAGC+AGG | 0.573004 | 1.4:-4901589 | MS.gene66455:CDS |
| TGTAGCTGCGGGTGAAGTAA+GGG | 0.576477 | 1.4:+4902008 | None:intergenic |
| TACGGTGCAGTGGCTGGACA+CGG | 0.580670 | 1.4:-4901271 | MS.gene66455:CDS |
| TGCAGTGGCTGGACACGGAG+GGG | 0.583201 | 1.4:-4901266 | MS.gene66455:CDS |
| TGAGTTTGGAGAAGAGCTCA+GGG | 0.586698 | 1.4:+4901795 | None:intergenic |
| GCGGGAAGAGTACGGTGCAG+TGG | 0.588508 | 1.4:-4901281 | MS.gene66455:CDS |
| GGTGCAGTGGCTGGACACGG+AGG | 0.590752 | 1.4:-4901268 | MS.gene66455:CDS |
| GGAGGGAATCAAGGATGTTG+AGG | 0.593146 | 1.4:+4901888 | None:intergenic |
| AGAGAATGACTTTGTAGCTG+CGG | 0.594196 | 1.4:+4901996 | None:intergenic |
| ACGTACATGAAGGAGCATCT+TGG | 0.596989 | 1.4:-4901303 | MS.gene66455:CDS |
| GGAAGCAAACTATGAAGCGT+GGG | 0.598905 | 1.4:-4901538 | MS.gene66455:CDS |
| GACGGTGGCGACGTACATGA+AGG | 0.605329 | 1.4:-4901313 | MS.gene66455:CDS |
| TCGAACAGCTGTCGGAACAT+CGG | 0.607669 | 1.4:+4901485 | None:intergenic |
| CGTAAGCACAGCGAGTGACG+TGG | 0.615367 | 1.4:+4901867 | None:intergenic |
| TGGAAGCAAACTATGAAGCG+TGG | 0.621196 | 1.4:-4901539 | MS.gene66455:CDS |
| GAAGACGATGTATTTGTCGC+CGG | 0.622717 | 1.4:+4902075 | None:intergenic |
| TGACACTGCCGGCGCAAACG+AGG | 0.625635 | 1.4:+4901969 | None:intergenic |
| CTCCCTGCTCGAATCCTCCG+TGG | 0.639416 | 1.4:+4901586 | None:intergenic |
| TACCACGGAGGATTCGAGCA+GGG | 0.646227 | 1.4:-4901588 | MS.gene66455:CDS |
| TCGGCACCGACCAATCAGCA+TGG | 0.652659 | 1.4:-4902042 | MS.gene66455:CDS |
| GCAAACGGCGAGAGACATGT+CGG | 0.653403 | 1.4:-4901343 | MS.gene66455:CDS |
| AATGTTGTGTTACCTTGGGG+AGG | 0.656956 | 1.4:+4901760 | None:intergenic |
| GGCGGTAATCAAAGTAATCG+GGG | 0.662111 | 1.4:+4901945 | None:intergenic |
| AAGCGTCAAGAGTTGTGTAA+CGG | 0.665000 | 1.4:+4901924 | None:intergenic |
| CGCGGACATTGAGTGCGTCG+AGG | 0.666130 | 1.4:+4902107 | None:intergenic |
| AAGCACAGCGAGTGACGTGG+AGG | 0.667993 | 1.4:+4901870 | None:intergenic |
| GTCACTCGCTGTGCTTACGT+CGG | 0.674311 | 1.4:-4901863 | MS.gene66455:CDS |
| AGCACAGCGAGTGACGTGGA+GGG | 0.684616 | 1.4:+4901871 | None:intergenic |
| GCCGTTTGCATGATACAACA+AGG | 0.702795 | 1.4:+4901357 | None:intergenic |
| AACGACGGTGAAAATTACCA+CGG | 0.704427 | 1.4:-4901603 | MS.gene66455:CDS |
| CGTCAAGAGTTGTGTAACGG+CGG | 0.709660 | 1.4:+4901927 | None:intergenic |
| AGCTAGCATTCCGATCATGG+CGG | 0.731839 | 1.4:+4901829 | None:intergenic |
| TGTCGCCGGAGCCTTCTACG+CGG | 0.759408 | 1.4:+4902089 | None:intergenic |
| GACGGTGAAAATTACCACGG+AGG | 0.766831 | 1.4:-4901600 | MS.gene66455:CDS |
| GTTTGGAGAAGAGCTCAGGG+CGG | 0.795181 | 1.4:+4901798 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATTTTAGTTATATCTGT+CGG | + | chr1.4:4901671-4901690 | None:intergenic | 20.0% |
| !! | ATATATCTCTCTTTGTTTCA+AGG | - | chr1.4:4901896-4901915 | MS.gene66455:CDS | 25.0% |
| !! | TTATTCAGATTTTTGAACGA+CGG | - | chr1.4:4901706-4901725 | MS.gene66455:intron | 25.0% |
| GAAACAAAGAGAGATATATC+TGG | + | chr1.4:4901895-4901914 | None:intergenic | 30.0% | |
| ATGAATGTTGTGTTACCTTG+GGG | + | chr1.4:4901570-4901589 | None:intergenic | 35.0% | |
| GATGAATGTTGTGTTACCTT+GGG | + | chr1.4:4901571-4901590 | None:intergenic | 35.0% | |
| TGATGAATGTTGTGTTACCT+TGG | + | chr1.4:4901572-4901591 | None:intergenic | 35.0% | |
| TTCTCCAAACTCATCCTTAT+CGG | - | chr1.4:4901539-4901558 | MS.gene66455:CDS | 35.0% | |
| ! | ACCTTGTTGTATCATGCAAA+CGG | - | chr1.4:4901966-4901985 | MS.gene66455:CDS | 35.0% |
| ! | TTTTCAACAGTGATCTGAGA+GGG | - | chr1.4:4901923-4901942 | MS.gene66455:CDS | 35.0% |
| !!! | TGAGCAAGTTTTTTCAGCAA+TGG | - | chr1.4:4901765-4901784 | MS.gene66455:intron | 35.0% |
| AAATACATCGTCTTCGCTCA+CGG | - | chr1.4:4901257-4901276 | MS.gene66455:CDS | 40.0% | |
| AACGACGGTGAAAATTACCA+CGG | - | chr1.4:4901721-4901740 | MS.gene66455:intron | 40.0% | |
| AAGCGTCAAGAGTTGTGTAA+CGG | + | chr1.4:4901403-4901422 | None:intergenic | 40.0% | |
| ACGGCGGTAATCAAAGTAAT+CGG | + | chr1.4:4901384-4901403 | None:intergenic | 40.0% | |
| AGAGAATGACTTTGTAGCTG+CGG | + | chr1.4:4901331-4901350 | None:intergenic | 40.0% | |
| CTGTCGGCAGTTATATTCAT+AGG | + | chr1.4:4901655-4901674 | None:intergenic | 40.0% | |
| GAAAATTCTCGAACAGCTGT+CGG | + | chr1.4:4901850-4901869 | None:intergenic | 40.0% | |
| TTCTTACTTGGCTCATCAAC+TGG | - | chr1.4:4902104-4902123 | MS.gene66455:CDS | 40.0% | |
| TTTGAGTGCTCCTTCTTACT+TGG | - | chr1.4:4902092-4902111 | MS.gene66455:CDS | 40.0% | |
| ! | GTTTTCAACAGTGATCTGAG+AGG | - | chr1.4:4901922-4901941 | MS.gene66455:CDS | 40.0% |
| !! | AGTTGATGAGCCAAGTAAGA+AGG | + | chr1.4:4902105-4902124 | None:intergenic | 40.0% |
| !! | TAAGAAGGAGCACTCAAATG+AGG | + | chr1.4:4902090-4902109 | None:intergenic | 40.0% |
| AACTATGAAGCGTGGGTGAA+CGG | - | chr1.4:4901793-4901812 | MS.gene66455:CDS | 45.0% | |
| AATGTTGTGTTACCTTGGGG+AGG | + | chr1.4:4901567-4901586 | None:intergenic | 45.0% | |
| AGTGATCTGAGAGGGATTCT+AGG | - | chr1.4:4901931-4901950 | MS.gene66455:CDS | 45.0% | |
| ATGAGTTTGGAGAAGAGCTC+AGG | + | chr1.4:4901533-4901552 | None:intergenic | 45.0% | |
| CGGCGGTAATCAAAGTAATC+GGG | + | chr1.4:4901383-4901402 | None:intergenic | 45.0% | |
| GAAGACGATGTATTTGTCGC+CGG | + | chr1.4:4901252-4901271 | None:intergenic | 45.0% | |
| GAGAATGACTTTGTAGCTGC+GGG | + | chr1.4:4901330-4901349 | None:intergenic | 45.0% | |
| GCCGTTTGCATGATACAACA+AGG | + | chr1.4:4901970-4901989 | None:intergenic | 45.0% | |
| GGAAGCAAACTATGAAGCGT+GGG | - | chr1.4:4901786-4901805 | MS.gene66455:CDS | 45.0% | |
| GGCGGTAATCAAAGTAATCG+GGG | + | chr1.4:4901382-4901401 | None:intergenic | 45.0% | |
| TGAGTTTGGAGAAGAGCTCA+GGG | + | chr1.4:4901532-4901551 | None:intergenic | 45.0% | |
| TGGAAGCAAACTATGAAGCG+TGG | - | chr1.4:4901785-4901804 | MS.gene66455:CDS | 45.0% | |
| !! | ACGTACATGAAGGAGCATCT+TGG | - | chr1.4:4902021-4902040 | MS.gene66455:CDS | 45.0% |
| !! | AGGGATTCTAGGACTGGTTA+AGG | - | chr1.4:4901942-4901961 | MS.gene66455:CDS | 45.0% |
| !! | TACATGAAGGAGCATCTTGG+CGG | - | chr1.4:4902024-4902043 | MS.gene66455:CDS | 45.0% |
| AGCTAGCATTCCGATCATGG+CGG | + | chr1.4:4901498-4901517 | None:intergenic | 50.0% | |
| CGTCAAGAGTTGTGTAACGG+CGG | + | chr1.4:4901400-4901419 | None:intergenic | 50.0% | |
| GACGGTGAAAATTACCACGG+AGG | - | chr1.4:4901724-4901743 | MS.gene66455:intron | 50.0% | |
| GGAAGCTAGCATTCCGATCA+TGG | + | chr1.4:4901501-4901520 | None:intergenic | 50.0% | |
| GGAGGGAATCAAGGATGTTG+AGG | + | chr1.4:4901439-4901458 | None:intergenic | 50.0% | |
| TCGAACAGCTGTCGGAACAT+CGG | + | chr1.4:4901842-4901861 | None:intergenic | 50.0% | |
| TGTAGCTGCGGGTGAAGTAA+GGG | + | chr1.4:4901319-4901338 | None:intergenic | 50.0% | |
| TTGTAGCTGCGGGTGAAGTA+AGG | + | chr1.4:4901320-4901339 | None:intergenic | 50.0% | |
| !! | ACATGAAGGAGCATCTTGGC+GGG | - | chr1.4:4902025-4902044 | MS.gene66455:CDS | 50.0% |
| !! | GGCACCGATAAGGATGAGTT+TGG | + | chr1.4:4901546-4901565 | None:intergenic | 50.0% |
| !! | TCTGAGAGGGATTCTAGGAC+TGG | - | chr1.4:4901936-4901955 | MS.gene66455:CDS | 50.0% |
| AATGTCCGCGTAGAAGGCTC+CGG | - | chr1.4:4901230-4901249 | MS.gene66455:CDS | 55.0% | |
| ATCGTCTTCGCTCACGGCTT+CGG | - | chr1.4:4901263-4901282 | MS.gene66455:CDS | 55.0% | |
| CACTCCATCTCCGCCATGAT+CGG | - | chr1.4:4901485-4901504 | MS.gene66455:CDS | 55.0% | |
| CTCTATGACCTCGTTTGCGC+CGG | - | chr1.4:4901347-4901366 | MS.gene66455:CDS | 55.0% | |
| GACATTGAGTGCGTCGAGGA+TGG | + | chr1.4:4901216-4901235 | None:intergenic | 55.0% | |
| GAGTGACGTGGAGGGAATCA+AGG | + | chr1.4:4901448-4901467 | None:intergenic | 55.0% | |
| GCAAACGGCGAGAGACATGT+CGG | - | chr1.4:4901981-4902000 | MS.gene66455:CDS | 55.0% | |
| GCACTCAATGTCCGCGTAGA+AGG | - | chr1.4:4901224-4901243 | MS.gene66455:CDS | 55.0% | |
| GCATCTTGGCGGGAAGAGTA+CGG | - | chr1.4:4902035-4902054 | MS.gene66455:CDS | 55.0% | |
| GTAATCGGGGTTGACACTGC+CGG | + | chr1.4:4901369-4901388 | None:intergenic | 55.0% | |
| GTCACTCGCTGTGCTTACGT+CGG | - | chr1.4:4901461-4901480 | MS.gene66455:CDS | 55.0% | |
| GTTTGGAGAAGAGCTCAGGG+CGG | + | chr1.4:4901529-4901548 | None:intergenic | 55.0% | |
| TACCACGGAGGATTCGAGCA+GGG | - | chr1.4:4901736-4901755 | MS.gene66455:intron | 55.0% | |
| TTACCACGGAGGATTCGAGC+AGG | - | chr1.4:4901735-4901754 | MS.gene66455:intron | 55.0% | |
| ! | CATTCCGATCATGGCGGAGA+TGG | + | chr1.4:4901492-4901511 | None:intergenic | 55.0% |
| ! | GGTGAACGGTTTTGCTCCAC+TGG | - | chr1.4:4901807-4901826 | MS.gene66455:CDS | 55.0% |
| !! | GGTTTTGCTCCACTGGCTGT+CGG | - | chr1.4:4901814-4901833 | MS.gene66455:CDS | 55.0% |
| !! | GTTTTGCTCCACTGGCTGTC+GGG | - | chr1.4:4901815-4901834 | MS.gene66455:CDS | 55.0% |
| !! | TTTTGCTCCACTGGCTGTCG+GGG | - | chr1.4:4901816-4901835 | MS.gene66455:CDS | 55.0% |
| AAGCACAGCGAGTGACGTGG+AGG | + | chr1.4:4901457-4901476 | None:intergenic | 60.0% | |
| AGCACAGCGAGTGACGTGGA+GGG | + | chr1.4:4901456-4901475 | None:intergenic | 60.0% | |
| CGTAAGCACAGCGAGTGACG+TGG | + | chr1.4:4901460-4901479 | None:intergenic | 60.0% | |
| GACGGTGGCGACGTACATGA+AGG | - | chr1.4:4902011-4902030 | MS.gene66455:CDS | 60.0% | |
| TACGGTGCAGTGGCTGGACA+CGG | - | chr1.4:4902053-4902072 | MS.gene66455:CDS | 60.0% | |
| ! | GAAGAGTACGGTGCAGTGGC+TGG | - | chr1.4:4902047-4902066 | MS.gene66455:CDS | 60.0% |
| ! | GCGCTGCCATGCTGATTGGT+CGG | + | chr1.4:4901291-4901310 | None:intergenic | 60.0% |
| ! | TCCTTATCGGTGCCTCCCCA+AGG | - | chr1.4:4901552-4901571 | MS.gene66455:CDS | 60.0% |
| !! | ACCTTGGGGAGGCACCGATA+AGG | + | chr1.4:4901556-4901575 | None:intergenic | 60.0% |
| !! | AGACATGTCGGTTCCGGCGA+CGG | - | chr1.4:4901993-4902012 | MS.gene66455:CDS | 60.0% |
| !! | GGCGAGAGACATGTCGGTTC+CGG | - | chr1.4:4901987-4902006 | MS.gene66455:CDS | 60.0% |
| !! | TCGGCACCGACCAATCAGCA+TGG | - | chr1.4:4901282-4901301 | MS.gene66455:CDS | 60.0% |
| ATGTACGTCGCCACCGTCGC+CGG | + | chr1.4:4902009-4902028 | None:intergenic | 65.0% | |
| CGCGGACATTGAGTGCGTCG+AGG | + | chr1.4:4901220-4901239 | None:intergenic | 65.0% | |
| CTCCCTGCTCGAATCCTCCG+TGG | + | chr1.4:4901741-4901760 | None:intergenic | 65.0% | |
| GAAGAGCTCAGGGCGGCGAA+TGG | + | chr1.4:4901522-4901541 | None:intergenic | 65.0% | |
| GCACGCGCTGCCATGCTGAT+TGG | + | chr1.4:4901295-4901314 | None:intergenic | 65.0% | |
| GTGCAGTGGCTGGACACGGA+GGG | - | chr1.4:4902057-4902076 | MS.gene66455:CDS | 65.0% | |
| TGACACTGCCGGCGCAAACG+AGG | + | chr1.4:4901358-4901377 | None:intergenic | 65.0% | |
| TGCAGTGGCTGGACACGGAG+GGG | - | chr1.4:4902058-4902077 | MS.gene66455:CDS | 65.0% | |
| TGTCGCCGGAGCCTTCTACG+CGG | + | chr1.4:4901238-4901257 | None:intergenic | 65.0% | |
| ! | GCGGGAAGAGTACGGTGCAG+TGG | - | chr1.4:4902043-4902062 | MS.gene66455:CDS | 65.0% |
| ACATCGGCCCCGACAGCCAG+TGG | + | chr1.4:4901826-4901845 | None:intergenic | 70.0% | |
| GGTGCAGTGGCTGGACACGG+AGG | - | chr1.4:4902056-4902075 | MS.gene66455:CDS | 70.0% | |
| !! | CATGTCGGTTCCGGCGACGG+TGG | - | chr1.4:4901996-4902015 | MS.gene66455:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 4901200 | 4902146 | 4901200 | ID=MS.gene66455 |
| chr1.4 | mRNA | 4901200 | 4902146 | 4901200 | ID=MS.gene66455.t1;Parent=MS.gene66455 |
| chr1.4 | exon | 4901773 | 4902146 | 4901773 | ID=MS.gene66455.t1.exon1;Parent=MS.gene66455.t1 |
| chr1.4 | CDS | 4901773 | 4902146 | 4901773 | ID=cds.MS.gene66455.t1;Parent=MS.gene66455.t1 |
| chr1.4 | exon | 4901200 | 4901632 | 4901200 | ID=MS.gene66455.t1.exon2;Parent=MS.gene66455.t1 |
| chr1.4 | CDS | 4901200 | 4901632 | 4901200 | ID=cds.MS.gene66455.t1;Parent=MS.gene66455.t1 |
| Gene Sequence |
| Protein sequence |
