AlfalfaGEDB | MS.gene66596

M. sativa cultivar XinJiangDaYe / MS.gene66596

KEGG: K20716
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66596.t1	XP_003605967.1	93.5	308	19	1	1	307	1	308	7.00E-166	593.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66596.t1	Q9ZVP5	54.5	303	112	11	1	284	1	296	1.9e-82	307.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66596.t1	G7JEQ9	93.5	308	19	1	1	307	1	308	5.1e-166	593.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene66596	0.829933	3.90E-55	-1.69E-46
MS.gene049368	MS.gene66596	0.817774	2.77E-52	-1.69E-46
MS.gene050253	MS.gene66596	0.816879	4.41E-52	-1.69E-46
MS.gene051676	MS.gene66596	0.818148	2.28E-52	-1.69E-46
MS.gene052463	MS.gene66596	0.820281	7.45E-53	-1.69E-46
MS.gene055513	MS.gene66596	0.810423	1.16E-50	-1.69E-46
MS.gene059439	MS.gene66596	0.823499	1.34E-53	-1.69E-46
MS.gene060777	MS.gene66596	0.806682	7.31E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene019336	MS.gene66596	PPI
MS.gene051832	MS.gene66596	PPI
MS.gene25686	MS.gene66596	PPI
MS.gene66596	MS.gene24850	PPI
MS.gene66596	MS.gene025170	PPI
MS.gene66596	MS.gene60448	PPI
MS.gene66596	MS.gene016703	PPI
MS.gene66596	MS.gene79044	PPI
MS.gene66596	MS.gene051207	PPI
MS.gene66596	MS.gene012243	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66596.t1	MTR_4g049730	93.506	308	19	1	1	307	1	308	0.0	600
MS.gene66596.t1	MTR_2g088020	61.204	299	100	8	1	290	3	294	2.19e-119	349
MS.gene66596.t1	MTR_2g023890	50.000	294	129	8	1	285	3	287	8.87e-98	291
MS.gene66596.t1	MTR_0154s0040	42.955	291	144	8	1	278	1	282	1.47e-63	204
MS.gene66596.t1	MTR_0189s0010	43.866	269	137	6	1	256	21	288	4.43e-63	203
MS.gene66596.t1	MTR_0154s0020	43.494	269	138	6	1	256	1	268	4.66e-63	202
MS.gene66596.t1	MTR_2g005290	39.414	307	144	12	2	272	9	309	2.32e-59	194
MS.gene66596.t1	MTR_5g017140	40.977	266	141	6	1	251	1	265	5.27e-58	189
MS.gene66596.t1	MTR_5g017110	41.275	298	152	9	3	278	4	300	6.03e-58	190
MS.gene66596.t1	MTR_5g071560	42.105	285	141	10	3	272	4	279	8.33e-57	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66596.t1	AT1G05100	54.455	303	112	11	1	284	1	296	6.83e-106	312
MS.gene66596.t1	AT2G32510	54.110	292	119	7	1	279	1	290	7.79e-103	306
MS.gene66596.t1	AT5G55090	50.000	318	145	7	3	309	6	320	2.50e-98	297
MS.gene66596.t1	AT5G55090	50.000	318	145	7	3	309	68	382	3.00e-97	296
MS.gene66596.t1	AT4G26890	48.185	303	145	7	1	296	3	300	3.86e-92	281
MS.gene66596.t1	AT1G07150	42.756	283	141	10	3	272	23	297	5.49e-63	207
MS.gene66596.t1	AT1G07150	42.756	283	141	10	3	272	9	283	6.61e-63	207
MS.gene66596.t1	AT4G36950	40.514	311	162	8	1	291	1	308	2.36e-62	201
MS.gene66596.t1	AT2G30040	40.569	281	148	9	3	272	17	289	7.92e-59	196
MS.gene66596.t1	AT5G67080	39.405	269	142	6	1	248	1	269	1.66e-56	186

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Find 75 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTTCGCCGTTAACTG+TGG	0.593051	4.3:-49930104	None:intergenic
AACTGTGGCTAGGTTGACGG+TGG	0.703030	4.3:-49930089	None:intergenic
AAGCCATCGTGTGCTATACA+AGG	0.555059	4.3:+49930332	MS.gene66596:CDS
AAGGGTGCCAATATCATGAT+TGG	0.498663	4.3:+49930412	MS.gene66596:CDS
AATATCATGATTGGTGAAGA+TGG	0.519981	4.3:+49930421	MS.gene66596:CDS
ACATCCAAAGTCTCCAATTT+TGG	0.230147	4.3:-49930446	None:intergenic
ACCGGTGTTCATGGCACCAG+AGG	0.611738	4.3:+49930510	MS.gene66596:CDS
ACCTCTGGTGCCATGAACAC+CGG	0.603907	4.3:-49930511	None:intergenic
ACTATAATTGAAATGGCAAC+TGG	0.430755	4.3:+49930586	MS.gene66596:CDS
AGAGGCCACGCTATAGGCCA+TGG	0.604508	4.3:+49930058	MS.gene66596:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATCATGATTGGTGAAGA+TGG	+	chr4.3:49930421-49930440	MS.gene66596:CDS	30.0%
ACTATAATTGAAATGGCAAC+TGG	+	chr4.3:49930586-49930605	MS.gene66596:CDS	30.0%
ATCTTCACCAATCATGATAT+TGG	-	chr4.3:49930422-49930441	None:intergenic	30.0%
ATGTTATCCTAATCCTTATG+TGG	+	chr4.3:49930195-49930214	MS.gene66596:CDS	30.0%
CATAATAATTCCCCAAGAAA+TGG	-	chr4.3:49930784-49930803	None:intergenic	30.0%
CTATACAAGGCAAATTGTAA+CGG	+	chr4.3:49930345-49930364	MS.gene66596:CDS	30.0%
CTTATGTGGTTACATACAAA+GGG	+	chr4.3:49930209-49930228	MS.gene66596:CDS	30.0%
CTTCATTGGAATATGCTATA+TGG	-	chr4.3:49930654-49930673	None:intergenic	30.0%
GAAAATTGGATCACAATTAG+AGG	+	chr4.3:49931015-49931034	MS.gene66596:intron	30.0%
GAATCAAACTACAAAAGCTA+AGG	-	chr4.3:49930900-49930919	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	49930046	49931088	49930046	ID=MS.gene66596
chr4.3	mRNA	49930046	49931088	49930046	ID=MS.gene66596.t1;Parent=MS.gene66596
chr4.3	exon	49930046	49930965	49930046	ID=MS.gene66596.t1.exon1;Parent=MS.gene66596.t1
chr4.3	CDS	49930046	49930965	49930046	ID=cds.MS.gene66596.t1;Parent=MS.gene66596.t1
chr4.3	exon	49931073	49931088	49931073	ID=MS.gene66596.t1.exon2;Parent=MS.gene66596.t1
chr4.3	CDS	49931073	49931088	49931073	ID=cds.MS.gene66596.t1;Parent=MS.gene66596.t1

Gene Sequence

>MS.gene66596

ATGAAGTGGAACAGAGGCCACGCTATAGGCCATGGTTCAACATCCACCGTCAACCTAGCCACAGTTAACGGCGAAATCTTTGCGGTGAAGTCATCCGAGCTATCGAGATCGGAGCCACTAATGAGAGAAGAGAAAATTCTATCTTCTCTATGTTATCCTAATCCTTATGTGGTTACATACAAAGGGTGTGACATTACCAAGGAGAACAACAAGTTCATGTACAATCTCTTCATGGAGTACATGCCATTTGGCACGCTTAGCCAGCACGGTGGCATGCTCGACGAGCAAGCCATCGTGTGCTATACAAGGCAAATTGTAACGGGGTTAGAGCATTTGCATTCAAAAGGGTTGGTACATTGTGACATCAAGGGTGCCAATATCATGATTGGTGAAGATGGAGCCAAAATTGGAGACTTTGGATGTGCTAAAAGCGTAAATGAGGCCGTGGCATCAATCCGCGGAACACCGGTGTTCATGGCACCAGAGGTGGCACGTGGAGAAGAACAAGAGTTTTCTAGTGATATTTGGTCACTTGGTTGCACTATAATTGAAATGGCAACTGGTTCTTCACCATGGCCTATAGATGACCCTATTTCAACACTTTACCATATAGCATATTCCAATGAAGTTCCTCAAATTCCATGTTTTCTATCAAATCAAGCAAAAGACTTTTTAGGGAAATGTTTAAGGAGGAATTCAAAAGAGAGATTTTCAGCTAGTCAACTTTTGAATCATCCATTTCTTGGGGAATTATTATGTTCTAATGAGAAGCAAGTTTTGGAATCTAATTCAATTTCACCAACTAGTATTCTTGATCAAGGCTTTTGGAGTTCTATGGAAGAATCACAAAGCCTTAGCTTTTGTAGTTTGATTCACACAACAAGTTTTGAGAATTCTTTTGTTGATGATAGGATCAAAAGGTTAGCAGGGGAACCCTGTTTGGCATGGTGGCATGATGATCATGATGATGAAAATTGGATCACAATTAGAGGGAATGAAGTTGATGGTATTTGCAATTGTGGGTCAGAGATAGGTTCAACTAG

Protein sequence

>MS.gene66596.t1

MKWNRGHAIGHGSTSTVNLATVNGEIFAVKSSELSRSEPLMREEKILSSLCYPNPYVVTYKGCDITKENNKFMYNLFMEYMPFGTLSQHGGMLDEQAIVCYTRQIVTGLEHLHSKGLVHCDIKGANIMIGEDGAKIGDFGCAKSVNEAVASIRGTPVFMAPEVARGEEQEFSSDIWSLGCTIIEMATGSSPWPIDDPISTLYHIAYSNEVPQIPCFLSNQAKDFLGKCLRRNSKERFSASQLLNHPFLGELLCSNEKQVLESNSISPTSILDQGFWSSMEESQSLSFCSLIHTTSFENSFVDDRIKRDRFN