Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67031.t1 | XP_013451654.1 | 86.1 | 294 | 40 | 1 | 1 | 293 | 1 | 294 | 3.70E-124 | 454.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67031.t1 | Q9LW20 | 56.0 | 241 | 94 | 2 | 53 | 293 | 52 | 280 | 3.9e-66 | 253.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67031.t1 | A0A072U7L4 | 86.1 | 294 | 40 | 1 | 1 | 293 | 1 | 294 | 2.6e-124 | 454.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050301 | MS.gene67031 | 0.802918 | 4.47E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene67031 | 0.826667 | 2.39E-54 | -1.69E-46 |
| MS.gene050406 | MS.gene67031 | 0.804293 | 2.32E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene67031 | 0.804165 | 2.46E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene67031 | 0.802841 | 4.63E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene67031 | 0.80221 | 6.25E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene67031 | 0.807487 | 4.93E-50 | -1.69E-46 |
| MS.gene056719 | MS.gene67031 | 0.802714 | 4.92E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene67031 | 0.819855 | 9.33E-53 | -1.69E-46 |
| MS.gene058276 | MS.gene67031 | 0.803369 | 3.60E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene67031 | 0.818666 | 1.74E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene67031 | 0.839204 | 1.82E-57 | -1.69E-46 |
| MS.gene060407 | MS.gene67031 | 0.833727 | 4.52E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene67031 | 0.828901 | 6.95E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67031.t1 | MTR_6g033510 | 91.186 | 295 | 23 | 2 | 1 | 293 | 1 | 294 | 0.0 | 525 |
| MS.gene67031.t1 | MTR_6g033510 | 90.847 | 295 | 23 | 3 | 1 | 293 | 1 | 293 | 0.0 | 518 |
| MS.gene67031.t1 | MTR_6g033510 | 90.169 | 295 | 24 | 3 | 1 | 293 | 1 | 292 | 0.0 | 515 |
| MS.gene67031.t1 | MTR_6g033510 | 90.157 | 254 | 22 | 2 | 1 | 252 | 1 | 253 | 1.41e-159 | 445 |
| MS.gene67031.t1 | MTR_6g033510 | 93.860 | 228 | 14 | 0 | 66 | 293 | 10 | 237 | 1.89e-156 | 436 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67031.t1 | AT3G26900 | 53.704 | 270 | 104 | 4 | 24 | 293 | 32 | 280 | 8.38e-91 | 271 |
| MS.gene67031.t1 | AT3G26900 | 53.704 | 270 | 104 | 4 | 24 | 293 | 32 | 280 | 8.38e-91 | 271 |
| MS.gene67031.t1 | AT3G26900 | 53.704 | 270 | 104 | 4 | 24 | 293 | 32 | 280 | 8.38e-91 | 271 |
| MS.gene67031.t1 | AT2G21940 | 35.859 | 198 | 126 | 1 | 80 | 276 | 89 | 286 | 4.73e-40 | 142 |
| MS.gene67031.t1 | AT2G21940 | 35.859 | 198 | 126 | 1 | 80 | 276 | 89 | 286 | 4.73e-40 | 142 |
| MS.gene67031.t1 | AT2G21940 | 35.859 | 198 | 126 | 1 | 80 | 276 | 89 | 286 | 4.73e-40 | 142 |
| MS.gene67031.t1 | AT2G21940 | 35.859 | 198 | 126 | 1 | 80 | 276 | 90 | 287 | 5.11e-40 | 142 |
| MS.gene67031.t1 | AT4G39540 | 36.318 | 201 | 125 | 3 | 80 | 277 | 85 | 285 | 4.99e-38 | 136 |
| MS.gene67031.t1 | AT4G39540 | 36.318 | 201 | 125 | 3 | 80 | 277 | 85 | 285 | 4.99e-38 | 136 |
| MS.gene67031.t1 | AT4G39540 | 34.928 | 209 | 125 | 4 | 80 | 277 | 85 | 293 | 5.72e-35 | 128 |
| MS.gene67031.t1 | AT2G21940 | 36.310 | 168 | 106 | 1 | 80 | 246 | 89 | 256 | 2.23e-31 | 118 |
| MS.gene67031.t1 | AT2G21940 | 36.310 | 168 | 106 | 1 | 80 | 246 | 89 | 256 | 2.23e-31 | 118 |
| MS.gene67031.t1 | AT2G21940 | 36.310 | 168 | 106 | 1 | 80 | 246 | 89 | 256 | 2.23e-31 | 118 |
Find 60 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTATTCAGCGATAATT+TGG | 0.269305 | 6.2:-23500101 | MS.gene67031:intron |
| ATTTGCCGGGTTGATTAAAA+TGG | 0.319793 | 6.2:+23498345 | None:intergenic |
| AATTTGAATGGAACAGAGAT+TGG | 0.347554 | 6.2:+23501788 | None:intergenic |
| TCATTTGAGATATCTGCTTC+AGG | 0.356204 | 6.2:-23498988 | MS.gene67031:CDS |
| AAGCTCTCTTAAAACCAATC+TGG | 0.360862 | 6.2:-23500249 | MS.gene67031:CDS |
| GCGTCAGAAACAGAGTTAAT+TGG | 0.384287 | 6.2:+23501749 | None:intergenic |
| CCATTTAGCTTCAGTGACTA+AGG | 0.393197 | 6.2:-23500590 | MS.gene67031:intron |
| AGCAGTCGACTTGTTCTTCC+CGG | 0.406314 | 6.2:-23501863 | MS.gene67031:CDS |
| TGTCTCATCACTCTCTTTGA+AGG | 0.409497 | 6.2:+23500042 | None:intergenic |
| TGCCATCATCTTCTTTACTC+TGG | 0.422125 | 6.2:+23498380 | None:intergenic |
| GGATTTATCTCTTGCGGTGA+AGG | 0.424634 | 6.2:-23500557 | MS.gene67031:intron |
| TGAGACATGGGATTACATTC+TGG | 0.435684 | 6.2:-23499071 | MS.gene67031:CDS |
| AGGAAATTGACTCTGGTTCT+CGG | 0.439253 | 6.2:+23499011 | None:intergenic |
| TACATATACATACATGGAAC+AGG | 0.444402 | 6.2:+23501719 | None:intergenic |
| TACAACAGAAGACATGGCTT+TGG | 0.447101 | 6.2:-23498649 | MS.gene67031:CDS |
| ATGAAGAAGATGAAGATTGA+AGG | 0.448466 | 6.2:+23501828 | None:intergenic |
| CTGCTGCTACGGAATTTGAA+TGG | 0.452474 | 6.2:+23501776 | None:intergenic |
| GCCTTTAGAGACTGTGGCTA+GGG | 0.453980 | 6.2:-23499040 | MS.gene67031:CDS |
| AACAGAAGACATGGCTTTGG+AGG | 0.456859 | 6.2:-23498646 | MS.gene67031:intron |
| ACAGAAGTAGCTTCTCAGTT+GGG | 0.457274 | 6.2:-23498693 | MS.gene67031:intron |
| ATGGAGGACCCTTTCAGCTC+AGG | 0.458494 | 6.2:+23500373 | None:intergenic |
| ATTTGAATGGAACAGAGATT+GGG | 0.468932 | 6.2:+23501789 | None:intergenic |
| AGCTCTCTTAAAACCAATCT+GGG | 0.470849 | 6.2:-23500248 | MS.gene67031:CDS |
| TTAGTAGTTTGTGCTGGAAA+TGG | 0.482861 | 6.2:-23499464 | MS.gene67031:CDS |
| ACTTAAGCAATTGTCATCCA+TGG | 0.483429 | 6.2:-23499492 | MS.gene67031:CDS |
| CAGAGATTGGGAATGGAAAG+TGG | 0.485675 | 6.2:+23501801 | None:intergenic |
| AATGGAACAGAGATTGGGAA+TGG | 0.495166 | 6.2:+23501794 | None:intergenic |
| TTGAAGGGATGAACAACTGC+CGG | 0.499354 | 6.2:+23501844 | None:intergenic |
| CAAATGAAGGAAATTGACTC+TGG | 0.500785 | 6.2:+23499004 | None:intergenic |
| ATGTATCCCCTGAGCTGAAA+GGG | 0.504370 | 6.2:-23500381 | MS.gene67031:CDS |
| TACAGAAGTAGCTTCTCAGT+TGG | 0.505172 | 6.2:-23498694 | MS.gene67031:intron |
| TAATTGGTCTTCTGCTGCTA+CGG | 0.507562 | 6.2:+23501765 | None:intergenic |
| AACCAATCTGGGAAAACTGC+TGG | 0.515195 | 6.2:-23500237 | MS.gene67031:CDS |
| GAAGCAGATATCTCAAATGA+AGG | 0.516865 | 6.2:+23498991 | None:intergenic |
| AGAATGTAATCCCATGTCTC+AGG | 0.517694 | 6.2:+23499073 | None:intergenic |
| TCCCTAGCCACAGTCTCTAA+AGG | 0.519416 | 6.2:+23499039 | None:intergenic |
| TGAAGAAGATGAAGATTGAA+GGG | 0.530653 | 6.2:+23501829 | None:intergenic |
| TGGAGGACCCTTTCAGCTCA+GGG | 0.534925 | 6.2:+23500374 | None:intergenic |
| GGTCGATTAGTAGTTTGTGC+TGG | 0.536252 | 6.2:-23499470 | MS.gene67031:CDS |
| GTTTGTTATTTCAATGGAGA+AGG | 0.537224 | 6.2:-23501918 | None:intergenic |
| TATAGGGCGCTCCTGAGACA+TGG | 0.543459 | 6.2:-23499084 | MS.gene67031:intron |
| TGAAGGGATGAACAACTGCC+GGG | 0.547199 | 6.2:+23501845 | None:intergenic |
| ATAGGGCGCTCCTGAGACAT+GGG | 0.554008 | 6.2:-23499083 | MS.gene67031:intron |
| GATGTATCCCCTGAGCTGAA+AGG | 0.568538 | 6.2:-23500382 | MS.gene67031:CDS |
| CGACATTACAACAGAAGACA+TGG | 0.570058 | 6.2:-23498655 | MS.gene67031:CDS |
| AGATTTGCCTTTAGAGACTG+TGG | 0.571455 | 6.2:-23499046 | MS.gene67031:CDS |
| TGCCTTTAGAGACTGTGGCT+AGG | 0.575369 | 6.2:-23499041 | MS.gene67031:CDS |
| GACCAGAGTAAAGAAGATGA+TGG | 0.587138 | 6.2:-23498382 | MS.gene67031:CDS |
| CTTAAGCAATTGTCATCCAT+GGG | 0.588790 | 6.2:-23499491 | MS.gene67031:CDS |
| TTCAAAGAGAGTGATGAGAC+AGG | 0.590608 | 6.2:-23500040 | MS.gene67031:CDS |
| TGCGACGGATTTATCTCTTG+CGG | 0.591366 | 6.2:-23500563 | MS.gene67031:CDS |
| AGTGACTAAGGTTTCTGCGA+CGG | 0.594871 | 6.2:-23500578 | MS.gene67031:CDS |
| AATTTGGTAGAAGAAGCTAT+AGG | 0.609571 | 6.2:-23500085 | MS.gene67031:CDS |
| CTATACAATAAGTACAAAGA+CGG | 0.623906 | 6.2:-23498837 | MS.gene67031:CDS |
| CATTAGGTAATGGATGAACT+CGG | 0.628657 | 6.2:-23498864 | MS.gene67031:intron |
| GACAGGCTTCTATGACTCTG+AGG | 0.662695 | 6.2:-23500023 | MS.gene67031:intron |
| TTGGTAGAAGAAGCTATAGG+TGG | 0.684928 | 6.2:-23500082 | MS.gene67031:CDS |
| ACAAACTACTAATCGACCCA+TGG | 0.691791 | 6.2:+23499475 | None:intergenic |
| GGAGGACCCTTTCAGCTCAG+GGG | 0.693258 | 6.2:+23500375 | None:intergenic |
| TGCTTCAGGATCTTACCCAG+AGG | 0.702926 | 6.2:-23498974 | MS.gene67031:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAATTAATATAAAA+AGG | - | chr6.2:23499053-23499072 | MS.gene67031:CDS | 0.0% |
| !!! | TTTTTTAATTAATATAAAAA+GGG | - | chr6.2:23499054-23499073 | MS.gene67031:CDS | 0.0% |
| !!! | TAAAATTTTGTCAAATTTTT+CGG | - | chr6.2:23501794-23501813 | MS.gene67031:CDS | 10.0% |
| !! | ATAATTCATATTTGATGTTA+CGG | - | chr6.2:23498627-23498646 | MS.gene67031:intron | 15.0% |
| !! | TAAACATAAGTAATAACATA+TGG | + | chr6.2:23500726-23500745 | None:intergenic | 15.0% |
| !! | TAATAAATATCAACAATTGA+TGG | + | chr6.2:23499572-23499591 | None:intergenic | 15.0% |
| !!! | TACAATTTTTCACTAATTTT+AGG | - | chr6.2:23501837-23501856 | MS.gene67031:CDS | 15.0% |
| !!! | TTTACTGAATTTAAGATATT+CGG | - | chr6.2:23498726-23498745 | MS.gene67031:intron | 15.0% |
| !! | AAATCAGTTACTTAAGAATA+GGG | + | chr6.2:23500615-23500634 | None:intergenic | 20.0% |
| !! | AATAAGCTTAAAATAGCTAA+TGG | + | chr6.2:23500391-23500410 | None:intergenic | 20.0% |
| !! | AATTAACAGAAATTAACAGT+AGG | + | chr6.2:23501378-23501397 | None:intergenic | 20.0% |
| !! | AATTTCTGTTAATTGACATT+AGG | - | chr6.2:23501384-23501403 | MS.gene67031:intron | 20.0% |
| !! | ATATAAAAAGGGTAAAATTG+AGG | - | chr6.2:23499065-23499084 | MS.gene67031:CDS | 20.0% |
| !! | ATTCTTACCAATCAAAAATA+TGG | + | chr6.2:23499913-23499932 | None:intergenic | 20.0% |
| !! | TAAACAATACTATCATTTGT+TGG | - | chr6.2:23499483-23499502 | MS.gene67031:CDS | 20.0% |
| !! | TATCAAGTTTAGCTAAAAAT+TGG | + | chr6.2:23500136-23500155 | None:intergenic | 20.0% |
| !!! | ATAGTTTAGTTTAACTTACT+TGG | + | chr6.2:23499429-23499448 | None:intergenic | 20.0% |
| !!! | GTCTTTTATTACTAATCTTA+TGG | + | chr6.2:23501031-23501050 | None:intergenic | 20.0% |
| !!! | TAAAGAGTAAATCATCATTT+TGG | + | chr6.2:23501125-23501144 | None:intergenic | 20.0% |
| !!! | TTACGAAGTTTTTTCATATT+AGG | - | chr6.2:23501688-23501707 | MS.gene67031:intron | 20.0% |
| ! | AAAAAAAATGTAAAACAGCC+CGG | + | chr6.2:23501501-23501520 | None:intergenic | 25.0% |
| ! | AACTCTATATAGTAACTCTA+AGG | + | chr6.2:23499380-23499399 | None:intergenic | 25.0% |
| ! | ACTCTATATAGTAACTCTAA+GGG | + | chr6.2:23499379-23499398 | None:intergenic | 25.0% |
| ! | ATACCTTGATCAAATAAATC+AGG | + | chr6.2:23499992-23500011 | None:intergenic | 25.0% |
| ! | ATTAAGTCGTTTATCCAAAT+AGG | - | chr6.2:23500528-23500547 | MS.gene67031:intron | 25.0% |
| ! | CTATACAATAAGTACAAAGA+CGG | - | chr6.2:23501427-23501446 | MS.gene67031:intron | 25.0% |
| ! | GAAATCAGTTACTTAAGAAT+AGG | + | chr6.2:23500616-23500635 | None:intergenic | 25.0% |
| ! | TACTTTATTCAGCGATAATT+TGG | - | chr6.2:23500163-23500182 | MS.gene67031:intron | 25.0% |
| ! | TCAACCATAAACTCAAAATT+TGG | - | chr6.2:23499201-23499220 | MS.gene67031:intron | 25.0% |
| ! | TCTATTTACATTTAGATGGT+AGG | + | chr6.2:23499596-23499615 | None:intergenic | 25.0% |
| ! | TGTTAATTGACATTAGGTAA+TGG | - | chr6.2:23501390-23501409 | MS.gene67031:intron | 25.0% |
| ! | TTAAGTCGTTTATCCAAATA+GGG | - | chr6.2:23500529-23500548 | MS.gene67031:intron | 25.0% |
| ! | TTCTACATTATCACTTCAAA+AGG | + | chr6.2:23499630-23499649 | None:intergenic | 25.0% |
| !! | GTAGTTGGCAATAATAATTT+TGG | - | chr6.2:23498690-23498709 | MS.gene67031:CDS | 25.0% |
| !! | TTCAAAGTATACAACTTTTC+CGG | - | chr6.2:23501479-23501498 | MS.gene67031:intron | 25.0% |
| !! | TTGGTATTTCAATTTGTTCA+TGG | - | chr6.2:23499502-23499521 | MS.gene67031:CDS | 25.0% |
| !! | TTGTAATTTTGTCACATTCA+AGG | + | chr6.2:23500911-23500930 | None:intergenic | 25.0% |
| !! | TTTAACTTACTTGGTCTAAA+GGG | + | chr6.2:23499420-23499439 | None:intergenic | 25.0% |
| !!! | AAAAAAAAAAAAGCACTGTG+AGG | + | chr6.2:23501542-23501561 | None:intergenic | 25.0% |
| !!! | TCATTTTTGCTATAATGACT+TGG | - | chr6.2:23501728-23501747 | MS.gene67031:intron | 25.0% |
| !!! | TGCGATATTATTATTTTGAC+AGG | - | chr6.2:23500059-23500078 | MS.gene67031:CDS | 25.0% |
| !!! | TTCACTAATTTTAGGTTCTT+CGG | - | chr6.2:23501845-23501864 | MS.gene67031:CDS | 25.0% |
| AACAGTAAGAAATTAACCTC+TGG | + | chr6.2:23501309-23501328 | None:intergenic | 30.0% | |
| AAGTAATTGTGAGACTGTTT+GGG | - | chr6.2:23500331-23500350 | MS.gene67031:intron | 30.0% | |
| AATTTGAATGGAACAGAGAT+TGG | + | chr6.2:23498479-23498498 | None:intergenic | 30.0% | |
| AATTTGGTAGAAGAAGCTAT+AGG | - | chr6.2:23500179-23500198 | MS.gene67031:intron | 30.0% | |
| ACAGTAAGAAATTAACCTCT+GGG | + | chr6.2:23501308-23501327 | None:intergenic | 30.0% | |
| ACATGCTCTTAAACTGTTAT+AGG | - | chr6.2:23501163-23501182 | MS.gene67031:intron | 30.0% | |
| ACTAAAGAAAGACAAATTCG+AGG | + | chr6.2:23500972-23500991 | None:intergenic | 30.0% | |
| ACTGCTTCATAGATCATAAT+TGG | + | chr6.2:23498791-23498810 | None:intergenic | 30.0% | |
| AGCAATTCTTAGCTATGATT+TGG | - | chr6.2:23501657-23501676 | MS.gene67031:intron | 30.0% | |
| ATGAAGAAGATGAAGATTGA+AGG | + | chr6.2:23498439-23498458 | None:intergenic | 30.0% | |
| ATTTGAATGGAACAGAGATT+GGG | + | chr6.2:23498478-23498497 | None:intergenic | 30.0% | |
| CATGCTCTTAAACTGTTATA+GGG | - | chr6.2:23501164-23501183 | MS.gene67031:intron | 30.0% | |
| CATTAACACAGATCAGAAAT+TGG | - | chr6.2:23499250-23499269 | MS.gene67031:intron | 30.0% | |
| CATTATTACTAACTCTTGGA+TGG | - | chr6.2:23501751-23501770 | MS.gene67031:CDS | 30.0% | |
| CTACCTGATTTATTTGATCA+AGG | - | chr6.2:23499986-23500005 | MS.gene67031:intron | 30.0% | |
| CTCGTCTATTTACATTTAGA+TGG | + | chr6.2:23499600-23499619 | None:intergenic | 30.0% | |
| CTCTATATAGTAACTCTAAG+GGG | + | chr6.2:23499378-23499397 | None:intergenic | 30.0% | |
| CTTACCAATCAAAAATATGG+AGG | + | chr6.2:23499910-23499929 | None:intergenic | 30.0% | |
| CTTATAACACACACAATCAA+TGG | - | chr6.2:23499935-23499954 | MS.gene67031:intron | 30.0% | |
| GAGAGTTACATATACATACA+TGG | + | chr6.2:23498554-23498573 | None:intergenic | 30.0% | |
| GTGTAAATTGATAGAGTAGT+TGG | - | chr6.2:23498675-23498694 | MS.gene67031:CDS | 30.0% | |
| GTTCTTCTCACTTAAATTTC+AGG | - | chr6.2:23500658-23500677 | MS.gene67031:intron | 30.0% | |
| TAAGTAATTGTGAGACTGTT+TGG | - | chr6.2:23500330-23500349 | MS.gene67031:intron | 30.0% | |
| TACATATACATACATGGAAC+AGG | + | chr6.2:23498548-23498567 | None:intergenic | 30.0% | |
| TAGCAAAAATGATGCTTGTA+TGG | + | chr6.2:23501720-23501739 | None:intergenic | 30.0% | |
| TGAAGAAGATGAAGATTGAA+GGG | + | chr6.2:23498438-23498457 | None:intergenic | 30.0% | |
| TTCACCTCACAATCATAATT+GGG | - | chr6.2:23499747-23499766 | MS.gene67031:intron | 30.0% | |
| TTGGCATTATTACTAACTCT+TGG | - | chr6.2:23501747-23501766 | MS.gene67031:CDS | 30.0% | |
| TTTCAAAAAGACTGAATCTC+AGG | + | chr6.2:23499813-23499832 | None:intergenic | 30.0% | |
| TTTCATTTGTGCATCAAACA+AGG | - | chr6.2:23500581-23500600 | MS.gene67031:CDS | 30.0% | |
| ! | AAACTATCCTTGATAGCTTA+TGG | + | chr6.2:23500415-23500434 | None:intergenic | 30.0% |
| ! | AACTATCCTTGATAGCTTAT+GGG | + | chr6.2:23500414-23500433 | None:intergenic | 30.0% |
| ! | AATTGTCTTAGACTGACTTA+GGG | - | chr6.2:23500269-23500288 | MS.gene67031:intron | 30.0% |
| ! | CGGTTTCATTTTGGATATAA+TGG | - | chr6.2:23500104-23500123 | MS.gene67031:intron | 30.0% |
| ! | GTTACCAAACAAGTCAATTT+TGG | - | chr6.2:23499158-23499177 | MS.gene67031:intron | 30.0% |
| ! | GTTTAACTTACTTGGTCTAA+AGG | + | chr6.2:23499421-23499440 | None:intergenic | 30.0% |
| ! | TAAAGATCAAACCGTCATTT+TGG | - | chr6.2:23500884-23500903 | MS.gene67031:intron | 30.0% |
| ! | TAATTGTCTTAGACTGACTT+AGG | - | chr6.2:23500268-23500287 | MS.gene67031:intron | 30.0% |
| ! | TCAAAGTATACAACTTTTCC+GGG | - | chr6.2:23501480-23501499 | MS.gene67031:intron | 30.0% |
| !! | ATGACCAAAATTGACTTGTT+TGG | + | chr6.2:23499165-23499184 | None:intergenic | 30.0% |
| !!! | AAGGCCAAATTTTGAGTTTA+TGG | + | chr6.2:23499208-23499227 | None:intergenic | 30.0% |
| !!! | TCACTAATTTTAGGTTCTTC+GGG | - | chr6.2:23501846-23501865 | MS.gene67031:CDS | 30.0% |
| AAGCTCTCTTAAAACCAATC+TGG | - | chr6.2:23500015-23500034 | MS.gene67031:intron | 35.0% | |
| ACATTCAAGGACCAAAATGA+CGG | + | chr6.2:23500898-23500917 | None:intergenic | 35.0% | |
| ACGTGTAGAATTACGATTGT+TGG | + | chr6.2:23499348-23499367 | None:intergenic | 35.0% | |
| ACTTAAGCAATTGTCATCCA+TGG | - | chr6.2:23500772-23500791 | MS.gene67031:intron | 35.0% | |
| AGCTCTCTTAAAACCAATCT+GGG | - | chr6.2:23500016-23500035 | MS.gene67031:intron | 35.0% | |
| AGGTTTAGATTTACTGTGGA+AGG | + | chr6.2:23501358-23501377 | None:intergenic | 35.0% | |
| ATGTCTTTCCTTAGTGAGTT+TGG | - | chr6.2:23500945-23500964 | MS.gene67031:intron | 35.0% | |
| ATTGAGTGTATCATGTGTGT+CGG | - | chr6.2:23498861-23498880 | MS.gene67031:CDS | 35.0% | |
| CAAACCCAATTATGATTGTG+AGG | + | chr6.2:23499754-23499773 | None:intergenic | 35.0% | |
| CAGTAGGTTTAGATTTACTG+TGG | + | chr6.2:23501362-23501381 | None:intergenic | 35.0% | |
| CAGTTACTTAAGAATAGGGT+AGG | + | chr6.2:23500611-23500630 | None:intergenic | 35.0% | |
| CTTAAGCAATTGTCATCCAT+GGG | - | chr6.2:23500773-23500792 | MS.gene67031:intron | 35.0% | |
| CTTAGTCACTGAAGCTAAAT+GGG | + | chr6.2:23499676-23499695 | None:intergenic | 35.0% | |
| CTTATTCCCATAAGCTATCA+AGG | - | chr6.2:23500405-23500424 | MS.gene67031:intron | 35.0% | |
| GAAGCAGATATCTCAAATGA+AGG | + | chr6.2:23501276-23501295 | None:intergenic | 35.0% | |
| GATAAACTAGCTGATACTAG+TGG | - | chr6.2:23498925-23498944 | MS.gene67031:intron | 35.0% | |
| GTATGCTCGTGAGAAAAAAT+TGG | - | chr6.2:23499136-23499155 | MS.gene67031:intron | 35.0% | |
| GTTCACCTCACAATCATAAT+TGG | - | chr6.2:23499746-23499765 | MS.gene67031:intron | 35.0% | |
| TCTGTTCATTCTCTGGTAAA+CGG | - | chr6.2:23500084-23500103 | MS.gene67031:CDS | 35.0% | |
| ! | CAAATGAAGGAAATTGACTC+TGG | + | chr6.2:23501263-23501282 | None:intergenic | 35.0% |
| ! | TCATTTGAGATATCTGCTTC+AGG | - | chr6.2:23501276-23501295 | MS.gene67031:intron | 35.0% |
| ! | TCTGGTAAACGGTTTCATTT+TGG | - | chr6.2:23500095-23500114 | MS.gene67031:intron | 35.0% |
| ! | TTAGTAGTTTGTGCTGGAAA+TGG | - | chr6.2:23500800-23500819 | MS.gene67031:intron | 35.0% |
| ! | TTTTGGTCCTTAAATGTGTG+AGG | + | chr6.2:23501108-23501127 | None:intergenic | 35.0% |
| !! | CATTAGGTAATGGATGAACT+CGG | - | chr6.2:23501400-23501419 | MS.gene67031:intron | 35.0% |
| !! | GGGCTTTGTTAGGTAAAAAA+TGG | - | chr6.2:23498893-23498912 | MS.gene67031:intron | 35.0% |
| AATGGAACAGAGATTGGGAA+TGG | + | chr6.2:23498473-23498492 | None:intergenic | 40.0% | |
| ACAAACTACTAATCGACCCA+TGG | + | chr6.2:23500792-23500811 | None:intergenic | 40.0% | |
| ACAGAAGTAGCTTCTCAGTT+GGG | - | chr6.2:23501571-23501590 | MS.gene67031:intron | 40.0% | |
| ACAGGTATCTGTTCATTCTC+TGG | - | chr6.2:23500077-23500096 | MS.gene67031:CDS | 40.0% | |
| ACATGAAGTGAGACCCTATT+TGG | + | chr6.2:23500545-23500564 | None:intergenic | 40.0% | |
| AGAATGTAATCCCATGTCTC+AGG | + | chr6.2:23501194-23501213 | None:intergenic | 40.0% | |
| CACACACAATCAATGGCTTT+CGG | - | chr6.2:23499942-23499961 | MS.gene67031:intron | 40.0% | |
| CCTTAGTCACTGAAGCTAAA+TGG | + | chr6.2:23499677-23499696 | None:intergenic | 40.0% | |
| CGACATTACAACAGAAGACA+TGG | - | chr6.2:23501609-23501628 | MS.gene67031:intron | 40.0% | |
| GACCAGAGTAAAGAAGATGA+TGG | - | chr6.2:23501882-23501901 | MS.gene67031:CDS | 40.0% | |
| GCGTCAGAAACAGAGTTAAT+TGG | + | chr6.2:23498518-23498537 | None:intergenic | 40.0% | |
| GTCTAAAGGGATCAAATCTG+TGG | + | chr6.2:23499407-23499426 | None:intergenic | 40.0% | |
| TAAACTCACGATGACGCATT+TGG | + | chr6.2:23501006-23501025 | None:intergenic | 40.0% | |
| TACAACAGAAGACATGGCTT+TGG | - | chr6.2:23501615-23501634 | MS.gene67031:intron | 40.0% | |
| TACAGAAGTAGCTTCTCAGT+TGG | - | chr6.2:23501570-23501589 | MS.gene67031:intron | 40.0% | |
| TCTGTGTTAATGCTACACCT+AGG | + | chr6.2:23499242-23499261 | None:intergenic | 40.0% | |
| TGAGACATGGGATTACATTC+TGG | - | chr6.2:23501193-23501212 | MS.gene67031:intron | 40.0% | |
| TGCCATCATCTTCTTTACTC+TGG | + | chr6.2:23501887-23501906 | None:intergenic | 40.0% | |
| TGTCTCATCACTCTCTTTGA+AGG | + | chr6.2:23500225-23500244 | None:intergenic | 40.0% | |
| TTCAAAGAGAGTGATGAGAC+AGG | - | chr6.2:23500224-23500243 | MS.gene67031:CDS | 40.0% | |
| TTGGTAGAAGAAGCTATAGG+TGG | - | chr6.2:23500182-23500201 | MS.gene67031:intron | 40.0% | |
| ! | ACTAGTGGACAAGTTTATCG+CGG | - | chr6.2:23498940-23498959 | MS.gene67031:intron | 40.0% |
| ! | AGATTTGCCTTTAGAGACTG+TGG | - | chr6.2:23501218-23501237 | MS.gene67031:intron | 40.0% |
| ! | CCATTTAGCTTCAGTGACTA+AGG | - | chr6.2:23499674-23499693 | MS.gene67031:intron | 40.0% |
| ! | TATTCGGTGAAATTCGTTGC+TGG | - | chr6.2:23498742-23498761 | MS.gene67031:intron | 40.0% |
| !! | AGGAAATTGACTCTGGTTCT+CGG | + | chr6.2:23501256-23501275 | None:intergenic | 40.0% |
| !! | GGGTCCTCCATATTTTTGAT+TGG | - | chr6.2:23499903-23499922 | MS.gene67031:intron | 40.0% |
| !! | GTTTGGGTTGCGATAACTTA+TGG | - | chr6.2:23500347-23500366 | MS.gene67031:intron | 40.0% |
| !! | TAATTGGTCTTCTGCTGCTA+CGG | + | chr6.2:23498502-23498521 | None:intergenic | 40.0% |
| AACCAATCTGGGAAAACTGC+TGG | - | chr6.2:23500027-23500046 | MS.gene67031:CDS | 45.0% | |
| AGTGACTAAGGTTTCTGCGA+CGG | - | chr6.2:23499686-23499705 | MS.gene67031:intron | 45.0% | |
| ATGTATCCCCTGAGCTGAAA+GGG | - | chr6.2:23499883-23499902 | MS.gene67031:intron | 45.0% | |
| CAGAGATTGGGAATGGAAAG+TGG | + | chr6.2:23498466-23498485 | None:intergenic | 45.0% | |
| CTGCTGCTACGGAATTTGAA+TGG | + | chr6.2:23498491-23498510 | None:intergenic | 45.0% | |
| GACACTGCCTCACACATTTA+AGG | - | chr6.2:23501098-23501117 | MS.gene67031:intron | 45.0% | |
| GGATTTATCTCTTGCGGTGA+AGG | - | chr6.2:23499707-23499726 | MS.gene67031:intron | 45.0% | |
| TTCGAGGACCAAACTCACTA+AGG | + | chr6.2:23500956-23500975 | None:intergenic | 45.0% | |
| TTGAAGGGATGAACAACTGC+CGG | + | chr6.2:23498423-23498442 | None:intergenic | 45.0% | |
| ! | AGACTGACTTAGGGTCTGTT+TGG | - | chr6.2:23500278-23500297 | MS.gene67031:intron | 45.0% |
| ! | GGTCGATTAGTAGTTTGTGC+TGG | - | chr6.2:23500794-23500813 | MS.gene67031:intron | 45.0% |
| ! | TGCGACGGATTTATCTCTTG+CGG | - | chr6.2:23499701-23499720 | MS.gene67031:intron | 45.0% |
| !! | AAAAGCACTGTGAGGACTTG+AGG | + | chr6.2:23501534-23501553 | None:intergenic | 45.0% |
| !! | AACAGAAGACATGGCTTTGG+AGG | - | chr6.2:23501618-23501637 | MS.gene67031:intron | 45.0% |
| !! | TCAATGGCTTTCGGTGTTTC+TGG | - | chr6.2:23499951-23499970 | MS.gene67031:intron | 45.0% |
| GACAGGCTTCTATGACTCTG+AGG | - | chr6.2:23500241-23500260 | MS.gene67031:CDS | 50.0% | |
| GATGTATCCCCTGAGCTGAA+AGG | - | chr6.2:23499882-23499901 | MS.gene67031:intron | 50.0% | |
| GTGAGGACTTGAGGCATACA+TGG | + | chr6.2:23501525-23501544 | None:intergenic | 50.0% | |
| TCCCTAGCCACAGTCTCTAA+AGG | + | chr6.2:23501228-23501247 | None:intergenic | 50.0% | |
| TGAAGGGATGAACAACTGCC+GGG | + | chr6.2:23498422-23498441 | None:intergenic | 50.0% | |
| TGCTACACCTAGGCTCTGTT+TGG | + | chr6.2:23499232-23499251 | None:intergenic | 50.0% | |
| TGCTTCAGGATCTTACCCAG+AGG | - | chr6.2:23501290-23501309 | MS.gene67031:intron | 50.0% | |
| ! | ACACCTTCGACCAGAAGTGT+CGG | - | chr6.2:23499275-23499294 | MS.gene67031:intron | 50.0% |
| ! | AGCCAGCAGTTTTCCCAGAT+TGG | + | chr6.2:23500032-23500051 | None:intergenic | 50.0% |
| ! | ATGTGTGTCGGTCTCGAGTA+GGG | - | chr6.2:23498873-23498892 | MS.gene67031:intron | 50.0% |
| ! | GCCTTTAGAGACTGTGGCTA+GGG | - | chr6.2:23501224-23501243 | MS.gene67031:intron | 50.0% |
| ! | TGCCTTTAGAGACTGTGGCT+AGG | - | chr6.2:23501223-23501242 | MS.gene67031:intron | 50.0% |
| !! | AGCAGTCGACTTGTTCTTCC+CGG | - | chr6.2:23498401-23498420 | MS.gene67031:CDS | 50.0% |
| !! | GTCTCGAGTAGGGCTTTGTT+AGG | - | chr6.2:23498883-23498902 | MS.gene67031:intron | 50.0% |
| ATGGAGGACCCTTTCAGCTC+AGG | + | chr6.2:23499894-23499913 | None:intergenic | 55.0% | |
| CACCTAGGCTCTGTTTGGCA+AGG | + | chr6.2:23499227-23499246 | None:intergenic | 55.0% | |
| TGGAGGACCCTTTCAGCTCA+GGG | + | chr6.2:23499893-23499912 | None:intergenic | 55.0% | |
| ! | ATAGGGCGCTCCTGAGACAT+GGG | - | chr6.2:23501181-23501200 | MS.gene67031:intron | 55.0% |
| ! | CATGTGTGTCGGTCTCGAGT+AGG | - | chr6.2:23498872-23498891 | MS.gene67031:intron | 55.0% |
| ! | TATAGGGCGCTCCTGAGACA+TGG | - | chr6.2:23501180-23501199 | MS.gene67031:intron | 55.0% |
| !! | CACAGTAGCACCGACACTTC+TGG | + | chr6.2:23499288-23499307 | None:intergenic | 55.0% |
| GGAGGACCCTTTCAGCTCAG+GGG | + | chr6.2:23499892-23499911 | None:intergenic | 60.0% | |
| GGCCTTGCCAAACAGAGCCT+AGG | - | chr6.2:23499222-23499241 | MS.gene67031:intron | 60.0% | |
| ! | GCACCGACACTTCTGGTCGA+AGG | + | chr6.2:23499281-23499300 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 23498359 | 23501927 | 23498359 | ID=MS.gene67031 |
| chr6.2 | mRNA | 23498359 | 23501927 | 23498359 | ID=MS.gene67031.t1;Parent=MS.gene67031 |
| chr6.2 | exon | 23501732 | 23501927 | 23501732 | ID=MS.gene67031.t1.exon1;Parent=MS.gene67031.t1 |
| chr6.2 | CDS | 23501732 | 23501927 | 23501732 | ID=cds.MS.gene67031.t1;Parent=MS.gene67031.t1 |
| chr6.2 | exon | 23500558 | 23500604 | 23500558 | ID=MS.gene67031.t1.exon2;Parent=MS.gene67031.t1 |
| chr6.2 | CDS | 23500558 | 23500604 | 23500558 | ID=cds.MS.gene67031.t1;Parent=MS.gene67031.t1 |
| chr6.2 | exon | 23500362 | 23500416 | 23500362 | ID=MS.gene67031.t1.exon3;Parent=MS.gene67031.t1 |
| chr6.2 | CDS | 23500362 | 23500416 | 23500362 | ID=cds.MS.gene67031.t1;Parent=MS.gene67031.t1 |
| chr6.2 | exon | 23500206 | 23500278 | 23500206 | ID=MS.gene67031.t1.exon4;Parent=MS.gene67031.t1 |
| chr6.2 | CDS | 23500206 | 23500278 | 23500206 | ID=cds.MS.gene67031.t1;Parent=MS.gene67031.t1 |
| chr6.2 | exon | 23500024 | 23500111 | 23500024 | ID=MS.gene67031.t1.exon5;Parent=MS.gene67031.t1 |
| chr6.2 | CDS | 23500024 | 23500111 | 23500024 | ID=cds.MS.gene67031.t1;Parent=MS.gene67031.t1 |
| chr6.2 | exon | 23499440 | 23499522 | 23499440 | ID=MS.gene67031.t1.exon6;Parent=MS.gene67031.t1 |
| chr6.2 | CDS | 23499440 | 23499522 | 23499440 | ID=cds.MS.gene67031.t1;Parent=MS.gene67031.t1 |
| chr6.2 | exon | 23498975 | 23499101 | 23498975 | ID=MS.gene67031.t1.exon7;Parent=MS.gene67031.t1 |
| chr6.2 | CDS | 23498975 | 23499101 | 23498975 | ID=cds.MS.gene67031.t1;Parent=MS.gene67031.t1 |
| chr6.2 | exon | 23498802 | 23498880 | 23498802 | ID=MS.gene67031.t1.exon8;Parent=MS.gene67031.t1 |
| chr6.2 | CDS | 23498802 | 23498880 | 23498802 | ID=cds.MS.gene67031.t1;Parent=MS.gene67031.t1 |
| chr6.2 | exon | 23498647 | 23498711 | 23498647 | ID=MS.gene67031.t1.exon9;Parent=MS.gene67031.t1 |
| chr6.2 | CDS | 23498647 | 23498711 | 23498647 | ID=cds.MS.gene67031.t1;Parent=MS.gene67031.t1 |
| chr6.2 | exon | 23498359 | 23498427 | 23498359 | ID=MS.gene67031.t1.exon10;Parent=MS.gene67031.t1 |
| chr6.2 | CDS | 23498359 | 23498427 | 23498359 | ID=cds.MS.gene67031.t1;Parent=MS.gene67031.t1 |
| Gene Sequence |
| Protein sequence |
