AlfalfaGEDB | MS.gene67242

M. sativa cultivar XinJiangDaYe / MS.gene67242

KEGG: -
GO: -
PFAM: PF14009.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67242.t1	XP_003615940.1	88.8	160	18	0	1	160	1	160	2.30E-67	265

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67242.t1	G7K5S3	88.8	160	18	0	1	160	1	160	1.6e-67	265.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050945	MS.gene67242	0.836089	1.15E-56	-1.69E-46
MS.gene054004	MS.gene67242	0.806178	9.33E-50	-1.69E-46
MS.gene054413	MS.gene67242	0.810735	9.94E-51	-1.69E-46
MS.gene055150	MS.gene67242	0.814638	1.39E-51	-1.69E-46
MS.gene055886	MS.gene67242	0.815424	9.31E-52	-1.69E-46
MS.gene060244	MS.gene67242	0.88033	6.00E-70	-1.69E-46
MS.gene060975	MS.gene67242	0.81461	1.41E-51	-1.69E-46
MS.gene060977	MS.gene67242	0.824984	6.00E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene004251	MS.gene67242	PPI
MS.gene54297	MS.gene67242	PPI
MS.gene67242	MS.gene002580	PPI
MS.gene67242	MS.gene01564	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67242.t1	MTR_5g074290	98.125	160	3	0	1	160	1	160	1.21e-112	316
MS.gene67242.t1	MTR_3g031140	65.116	172	44	4	1	158	1	170	2.44e-67	202
MS.gene67242.t1	MTR_2g016150	42.778	180	80	5	1	157	1	180	7.64e-26	97.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67242.t1	AT2G30230	56.425	179	55	4	1	159	1	176	4.75e-58	179
MS.gene67242.t1	AT1G06980	59.302	172	53	4	1	159	1	168	8.55e-58	178
MS.gene67242.t1	AT1G29195	39.683	189	81	5	1	157	1	188	1.78e-34	119

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Find 32 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTCGAGGCGAGATCGC+CGG	0.545398	5.1:+56972930	MS.gene67242:CDS
ACAGAAACATTGTGAGTCTA+AGG	0.406561	5.1:+56972901	MS.gene67242:CDS
AGAACTTCCCCAGCTGAAAT+TGG	0.250090	5.1:-56972629	None:intergenic
AGCCATTTAAATGAACTATA+CGG	0.418439	5.1:-56972586	None:intergenic
ATCAAGTCTAGTGCTCCACA+TGG	0.636272	5.1:-56972563	None:intergenic
ATCCGTATAGTTCATTTAAA+TGG	0.184956	5.1:+56972584	MS.gene67242:CDS
ATCGCCGGCATAGCCGTAGC+TGG	0.494180	5.1:+56972945	MS.gene67242:CDS
ATTACACGTCCAATTTCAGC+TGG	0.481683	5.1:+56972620	MS.gene67242:CDS
CAAGATGAGGTTGCCAGCTA+CGG	0.497711	5.1:-56972958	None:intergenic
CAATAATGGGGAATAGCTTA+AGG	0.463109	5.1:+56972519	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTATGATACTTTCAAGATG+AGG	-	chr5.1:56972974-56972993	None:intergenic	30.0%
ACAGAAACATTGTGAGTCTA+AGG	+	chr5.1:56972901-56972920	MS.gene67242:CDS	35.0%
ATTACACGTCCAATTTCAGC+TGG	+	chr5.1:56972620-56972639	MS.gene67242:CDS	40.0%
TTACACGTCCAATTTCAGCT+GGG	+	chr5.1:56972621-56972640	MS.gene67242:CDS	40.0%
AGAACTTCCCCAGCTGAAAT+TGG	-	chr5.1:56972632-56972651	None:intergenic	45.0%
ATCAAGTCTAGTGCTCCACA+TGG	-	chr5.1:56972566-56972585	None:intergenic	45.0%
CGTCGTTACCGGAGAAAAAA+CGG	+	chr5.1:56972774-56972793	MS.gene67242:CDS	45.0%
CTAAGGAGATGAAAAGCTCG+AGG	+	chr5.1:56972918-56972937	MS.gene67242:CDS	45.0%
CTTCTTGCTCTTCTCTTCAG+AGG	-	chr5.1:56972855-56972874	None:intergenic	45.0%
GTTACCGGAGAAAAAACGGA+GGG	+	chr5.1:56972778-56972797	MS.gene67242:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	56972524	56973006	56972524	ID=MS.gene67242
chr5.1	mRNA	56972524	56973006	56972524	ID=MS.gene67242.t1;Parent=MS.gene67242
chr5.1	exon	56972524	56973006	56972524	ID=MS.gene67242.t1.exon1;Parent=MS.gene67242.t1
chr5.1	CDS	56972524	56973006	56972524	ID=cds.MS.gene67242.t1;Parent=MS.gene67242.t1

Gene Sequence

>MS.gene67242

ATGGGGAATAGCTTAAGGTGTTGTTTGGCTTGTGTTCTTCCATGTGGAGCACTAGACTTGATCCGTATAGTTCATTTAAATGGCTATGTAGAAGAGATTACACGTCCAATTTCAGCTGGGGAAGTTCTTAAAGCCAATCCAAATCATGTTCTAAGCAAACCAAGCTCTGAAGGAGTCGTTCGCCGGATTCTCATCCTTTCGCCGGAGACTGAGCTCAAGAGAGGAAGCATATACTTCTTGATCCCATCCACGTCGTTACCGGAGAAAAAACGGAGGGTCAGAAGAAGCGTCGCGGAAAAAGATCTTGAAAACAAGAAAGTATATTTCTCCTCTGAAGAGAAGAGCAAGAAGTGTGACGATGATAATAAATCATCGTCACAGAAACATTGTGAGTCTAAGGAGATGAAAAGCTCGAGGCGAGATCGCCGGCATAGCCGTAGCTGGCAACCTCATCTTGAAAGTATCATAGAAGATTTGTGTTAG

Protein sequence

>MS.gene67242.t1

MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPISAGEVLKANPNHVLSKPSSEGVVRRILILSPETELKRGSIYFLIPSTSLPEKKRRVRRSVAEKDLENKKVYFSSEEKSKKCDDDNKSSSQKHCESKEMKSSRRDRRHSRSWQPHLESIIEDLC