Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67270.t1 | PNX99521.1 | 48.1 | 673 | 130 | 5 | 1 | 462 | 1 | 665 | 9.50E-151 | 543.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67270.t1 | Q9LKR4 | 46.3 | 227 | 105 | 2 | 73 | 289 | 67 | 286 | 3.9e-52 | 207.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67270.t1 | A0A2K3N8Z5 | 48.1 | 673 | 130 | 5 | 1 | 462 | 1 | 665 | 6.8e-151 | 543.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene67270.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene67270 | 0.812696 | 3.72E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene67270 | 0.831472 | 1.64E-55 | -1.69E-46 |
| MS.gene050953 | MS.gene67270 | 0.823692 | 1.21E-53 | -1.69E-46 |
| MS.gene052447 | MS.gene67270 | 0.81042 | 1.16E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene67270 | 0.8008 | 1.22E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene67270 | 0.803192 | 3.92E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene67270 | 0.841027 | 6.09E-58 | -1.69E-46 |
| MS.gene054291 | MS.gene67270 | -0.801578 | 8.43E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene67270 | 0.818836 | 1.59E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene67270 | 0.805747 | 1.15E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene67270 | 0.805525 | 1.28E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene67270 | 0.804159 | 2.47E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene67270 | 0.801103 | 1.05E-48 | -1.69E-46 |
| MS.gene060521 | MS.gene67270 | 0.815601 | 8.50E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene67270 | 0.80978 | 1.60E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene67270 | -0.817792 | 2.74E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67270.t1 | MTR_3g450850 | 67.164 | 268 | 87 | 1 | 31 | 297 | 16 | 283 | 1.80e-127 | 374 |
| MS.gene67270.t1 | MTR_4g071400 | 96.203 | 79 | 3 | 0 | 339 | 417 | 43 | 121 | 1.94e-44 | 152 |
| MS.gene67270.t1 | MTR_4g035820 | 35.317 | 252 | 153 | 3 | 60 | 309 | 74 | 317 | 6.45e-41 | 155 |
| MS.gene67270.t1 | MTR_3g012160 | 76.136 | 88 | 21 | 0 | 210 | 297 | 2 | 89 | 1.23e-40 | 140 |
| MS.gene67270.t1 | MTR_1g070355 | 31.064 | 235 | 142 | 7 | 61 | 289 | 72 | 292 | 3.15e-23 | 103 |
| MS.gene67270.t1 | MTR_6g014355 | 36.508 | 189 | 101 | 6 | 142 | 319 | 14 | 194 | 7.01e-22 | 94.7 |
| MS.gene67270.t1 | MTR_5g076070 | 27.511 | 229 | 150 | 7 | 64 | 289 | 56 | 271 | 2.53e-19 | 88.2 |
| MS.gene67270.t1 | MTR_5g083630 | 57.143 | 70 | 24 | 1 | 204 | 267 | 7 | 76 | 1.81e-18 | 81.3 |
| MS.gene67270.t1 | MTR_3g095940 | 81.395 | 43 | 8 | 0 | 290 | 332 | 101 | 143 | 6.68e-17 | 78.2 |
| MS.gene67270.t1 | MTR_6g022080 | 27.962 | 211 | 116 | 8 | 33 | 232 | 62 | 247 | 1.53e-14 | 73.6 |
| MS.gene67270.t1 | MTR_1g019850 | 30.000 | 140 | 80 | 3 | 67 | 205 | 76 | 198 | 5.39e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67270.t1 | AT5G28530 | 39.865 | 296 | 159 | 3 | 31 | 316 | 27 | 313 | 3.51e-67 | 228 |
| MS.gene67270.t1 | AT5G28530 | 39.865 | 296 | 159 | 3 | 31 | 316 | 27 | 313 | 4.11e-67 | 227 |
| MS.gene67270.t1 | AT5G28530 | 39.865 | 296 | 159 | 3 | 31 | 316 | 27 | 313 | 4.11e-67 | 227 |
| MS.gene67270.t1 | AT1G10240 | 41.176 | 289 | 157 | 6 | 30 | 311 | 11 | 293 | 9.25e-61 | 210 |
| MS.gene67270.t1 | AT1G10240 | 41.176 | 289 | 157 | 6 | 30 | 311 | 11 | 293 | 9.25e-61 | 210 |
| MS.gene67270.t1 | AT5G28530 | 40.072 | 277 | 148 | 5 | 31 | 298 | 27 | 294 | 5.06e-56 | 196 |
| MS.gene67270.t1 | AT5G28530 | 40.072 | 277 | 148 | 5 | 31 | 298 | 27 | 294 | 5.08e-56 | 196 |
| MS.gene67270.t1 | AT4G38180 | 25.630 | 238 | 155 | 5 | 61 | 286 | 73 | 300 | 1.80e-12 | 70.1 |
Find 82 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTAAAACTTACTTATT+AGG | 0.177601 | 5.1:+56710647 | None:intergenic |
| TTCTCACAACCACGAGTTAT+TGG | 0.199264 | 5.1:-56711728 | MS.gene67270:CDS |
| ATCACATGTTCTTGAGTTTC+AGG | 0.210618 | 5.1:+56710890 | None:intergenic |
| CTCATGTTGAAGCAACTTAA+AGG | 0.248230 | 5.1:+56711324 | None:intergenic |
| TGTTTATTTGCAAAACAAAA+TGG | 0.260407 | 5.1:-56711994 | MS.gene67270:CDS |
| CAATATGAATTCACAATTGA+TGG | 0.266214 | 5.1:-56711436 | MS.gene67270:CDS |
| AATATCATCATAAAGATAAA+AGG | 0.310779 | 5.1:-56710917 | MS.gene67270:CDS |
| TCAAGAACATGTGATTGATT+TGG | 0.314506 | 5.1:-56710882 | MS.gene67270:CDS |
| CATCAATTGTGAATTCATAT+TGG | 0.326055 | 5.1:+56711437 | None:intergenic |
| GCAGCTTCAACCCCTCCTTT+TGG | 0.339248 | 5.1:+56710776 | None:intergenic |
| ATTCAATCATATAGTGGTAT+TGG | 0.341059 | 5.1:-56711526 | MS.gene67270:CDS |
| ACTCTCGCTATAAGACTTAC+AGG | 0.343612 | 5.1:+56711616 | None:intergenic |
| CAAATTGGAGCATATTGTTT+GGG | 0.347369 | 5.1:-56711407 | MS.gene67270:CDS |
| GAGCATATTGTTTGGGCATT+TGG | 0.348974 | 5.1:-56711400 | MS.gene67270:CDS |
| ACAAATTGGAGCATATTGTT+TGG | 0.352856 | 5.1:-56711408 | MS.gene67270:CDS |
| AATTGATGGAAGTAACAAAT+TGG | 0.358783 | 5.1:-56711422 | MS.gene67270:CDS |
| ATGACAACGACGAGGCTTCT+TGG | 0.366012 | 5.1:+56710754 | None:intergenic |
| TCAGTCTCTAATTCGATGTT+TGG | 0.372448 | 5.1:-56710996 | MS.gene67270:intron |
| AACGTCACAGTCAGCATTGT+TGG | 0.377007 | 5.1:+56710847 | None:intergenic |
| GTAGTTACTAAGAGAAGAAT+TGG | 0.389295 | 5.1:-56711787 | MS.gene67270:CDS |
| CCTCAAGTCACTAACATTGA+TGG | 0.399508 | 5.1:-56712183 | MS.gene67270:CDS |
| TCAAATATTTGCCCTTCAAA+AGG | 0.411166 | 5.1:+56712153 | None:intergenic |
| ATCCATCGGGTGTTTATAAG+AGG | 0.417116 | 5.1:-56711915 | MS.gene67270:CDS |
| TATACGACCACCATCAACTT+TGG | 0.437731 | 5.1:+56711234 | None:intergenic |
| TGATTAGTTCCACCACAATC+TGG | 0.446933 | 5.1:+56710728 | None:intergenic |
| GTTTGTCATCGTGGTGGTAT+TGG | 0.458689 | 5.1:-56711886 | MS.gene67270:CDS |
| AAAGACAAGTGAACGAGAAC+AGG | 0.461839 | 5.1:-56710960 | MS.gene67270:CDS |
| ATGCGATCTTGATCAACAAT+TGG | 0.465554 | 5.1:+56711664 | None:intergenic |
| TATAAGACTTACAGGGCAAC+CGG | 0.483233 | 5.1:+56711624 | None:intergenic |
| CTTGAGTTAGAGAAAAGAAC+AGG | 0.494786 | 5.1:-56711592 | MS.gene67270:CDS |
| AAAACAAAAGGTCGGCCAAA+AGG | 0.495104 | 5.1:-56710806 | MS.gene67270:CDS |
| AAACCACGCAAAACTGTTGA+AGG | 0.495907 | 5.1:-56711862 | MS.gene67270:CDS |
| TTGATAGGATCATGAAGGGT+TGG | 0.498564 | 5.1:-56710560 | MS.gene67270:intron |
| TGAAGCAACTTAAAGGCATA+AGG | 0.499495 | 5.1:+56711331 | None:intergenic |
| CGTTGTCATGTTCCAGATTG+TGG | 0.504732 | 5.1:-56710740 | MS.gene67270:CDS |
| AATTGTGAATTCATATTGGA+AGG | 0.507660 | 5.1:+56711441 | None:intergenic |
| CCAAAAGGATCAAGACCAAA+AGG | 0.514192 | 5.1:-56710791 | MS.gene67270:CDS |
| ATTGGAATGTTACGATAAGC+AGG | 0.522557 | 5.1:+56711682 | None:intergenic |
| TAAGCAATGATGCTAGTGAT+TGG | 0.525487 | 5.1:-56712212 | MS.gene67270:CDS |
| TTAGAGAAAAGAACAGGCAC+AGG | 0.528687 | 5.1:-56711586 | MS.gene67270:CDS |
| ATACTATTATTGTCTAAAGC+CGG | 0.531055 | 5.1:-56711643 | MS.gene67270:CDS |
| ATGTTATTGACTTGAGGCAA+GGG | 0.535385 | 5.1:+56712081 | None:intergenic |
| CAACATCATACCAAAGTTGA+TGG | 0.538288 | 5.1:-56711244 | MS.gene67270:CDS |
| TTGCACAACATAAGAGCCAT+TGG | 0.551354 | 5.1:+56711264 | None:intergenic |
| CTCAAGTCACTAACATTGAT+GGG | 0.551567 | 5.1:-56712182 | MS.gene67270:CDS |
| TAAGAGAAGAATTGGCATTG+AGG | 0.553953 | 5.1:-56711779 | MS.gene67270:CDS |
| GTGCTTTGATAGGATCATGA+AGG | 0.556862 | 5.1:-56710565 | MS.gene67270:intron |
| ACATGTGATTGATTTGGAAG+AGG | 0.565753 | 5.1:-56710876 | MS.gene67270:CDS |
| ATGTGATTGTAGTGCAAAGA+TGG | 0.570079 | 5.1:-56711809 | MS.gene67270:CDS |
| ATGTTAGTGACTTGAGGCAA+GGG | 0.572230 | 5.1:+56712189 | None:intergenic |
| GTGTCTGAAGAGAATCCATC+GGG | 0.572540 | 5.1:-56711928 | MS.gene67270:CDS |
| CGAGTTATTGGATGACAAAG+AGG | 0.580002 | 5.1:-56711716 | MS.gene67270:CDS |
| TCGTCAATGTTATTGACTTG+AGG | 0.585906 | 5.1:+56712075 | None:intergenic |
| CTGTTGAAGGGGAAAATCAA+AGG | 0.587049 | 5.1:-56711849 | MS.gene67270:CDS |
| AGTCACTAACATTGATGGGT+GGG | 0.589348 | 5.1:-56712178 | MS.gene67270:CDS |
| AACCACGCAAAACTGTTGAA+GGG | 0.593269 | 5.1:-56711861 | MS.gene67270:CDS |
| ACCACGCAAAACTGTTGAAG+GGG | 0.593556 | 5.1:-56711860 | MS.gene67270:CDS |
| AATGTTATTGACTTGAGGCA+AGG | 0.594173 | 5.1:+56712080 | None:intergenic |
| AATGTTAGTGACTTGAGGCA+AGG | 0.597462 | 5.1:+56712188 | None:intergenic |
| AGGGAATTTGTTTGTCATCG+TGG | 0.598966 | 5.1:-56711895 | MS.gene67270:CDS |
| TGTGTCTGAAGAGAATCCAT+CGG | 0.599444 | 5.1:-56711929 | MS.gene67270:CDS |
| TCCCTCTTATAAACACCCGA+TGG | 0.599604 | 5.1:+56711913 | None:intergenic |
| GCAGCAATTGAAGCTGCCAA+TGG | 0.600590 | 5.1:-56711280 | MS.gene67270:CDS |
| CTTTGTCATCCAATAACTCG+TGG | 0.606716 | 5.1:+56711719 | None:intergenic |
| AAGGATCAAGACCAAAAGGA+GGG | 0.611165 | 5.1:-56710787 | MS.gene67270:CDS |
| CCATCAATGTTAGTGACTTG+AGG | 0.613145 | 5.1:+56712183 | None:intergenic |
| GAATTTGTTTGTCATCGTGG+TGG | 0.618777 | 5.1:-56711892 | MS.gene67270:CDS |
| AAGTCACTAACATTGATGGG+TGG | 0.624878 | 5.1:-56712179 | MS.gene67270:CDS |
| TCCATCGGGTGTTTATAAGA+GGG | 0.625908 | 5.1:-56711914 | MS.gene67270:CDS |
| TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 5.1:+56710659 | None:intergenic |
| TGTCATGTTCCAGATTGTGG+TGG | 0.637809 | 5.1:-56710737 | MS.gene67270:CDS |
| CTCTCGCTATAAGACTTACA+GGG | 0.647869 | 5.1:+56711617 | None:intergenic |
| AAAGGATCAAGACCAAAAGG+AGG | 0.655085 | 5.1:-56710788 | MS.gene67270:CDS |
| CAAGTCAATAACATTGACGA+GGG | 0.659657 | 5.1:-56712072 | MS.gene67270:CDS |
| TGCTTTGATAGGATCATGAA+GGG | 0.676443 | 5.1:-56710564 | MS.gene67270:intron |
| TCAAGTCAATAACATTGACG+AGG | 0.680596 | 5.1:-56712073 | MS.gene67270:CDS |
| AAGTTTGAAAGATCGAGATG+AGG | 0.682349 | 5.1:-56711464 | MS.gene67270:CDS |
| CATCATACCAAAGTTGATGG+TGG | 0.683172 | 5.1:-56711241 | MS.gene67270:CDS |
| AGGATCAAGACCAAAAGGAG+GGG | 0.696841 | 5.1:-56710786 | MS.gene67270:CDS |
| ATAAGGTGTGAGTATAGACG+AGG | 0.720548 | 5.1:+56711348 | None:intergenic |
| AAGTCAATAACATTGACGAG+GGG | 0.729947 | 5.1:-56712071 | MS.gene67270:CDS |
| TCTGGAACATGACAACGACG+AGG | 0.797744 | 5.1:+56710746 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTAACTGTATTTTTA+TGG | - | chr5.1:56712192-56712211 | MS.gene67270:CDS | 10.0% |
| !! | AATATCATCATAAAGATAAA+AGG | - | chr5.1:56711862-56711881 | MS.gene67270:CDS | 15.0% |
| !!! | AATTTTATTCAATCATATAG+TGG | - | chr5.1:56711247-56711266 | MS.gene67270:CDS | 15.0% |
| !! | CCAATTAAAACTTACTTATT+AGG | + | chr5.1:56712135-56712154 | None:intergenic | 20.0% |
| !! | TGTTTATTTGCAAAACAAAA+TGG | - | chr5.1:56710785-56710804 | MS.gene67270:CDS | 20.0% |
| !!! | AACAAAATGGATTTTCTATT+AGG | - | chr5.1:56710798-56710817 | MS.gene67270:CDS | 20.0% |
| !!! | CCTAATAAGTAAGTTTTAAT+TGG | - | chr5.1:56712132-56712151 | MS.gene67270:CDS | 20.0% |
| !!! | CTAATATCTTTTTCTAAGAA+TGG | + | chr5.1:56711226-56711245 | None:intergenic | 20.0% |
| !!! | TTATTACATGACTAGATTTT+GGG | + | chr5.1:56711735-56711754 | None:intergenic | 20.0% |
| !!! | TTTATTACATGACTAGATTT+TGG | + | chr5.1:56711736-56711755 | None:intergenic | 20.0% |
| ! | AATTGATGGAAGTAACAAAT+TGG | - | chr5.1:56711357-56711376 | MS.gene67270:CDS | 25.0% |
| ! | AATTGTGAATTCATATTGGA+AGG | + | chr5.1:56711341-56711360 | None:intergenic | 25.0% |
| ! | ATTCAATCATATAGTGGTAT+TGG | - | chr5.1:56711253-56711272 | MS.gene67270:CDS | 25.0% |
| ! | CAATATGAATTCACAATTGA+TGG | - | chr5.1:56711343-56711362 | MS.gene67270:CDS | 25.0% |
| ! | CATCAATTGTGAATTCATAT+TGG | + | chr5.1:56711345-56711364 | None:intergenic | 25.0% |
| ! | TCCAAACAAAAAGAGAAAAA+TGG | - | chr5.1:56712089-56712108 | MS.gene67270:CDS | 25.0% |
| ! | TTGTTTCAAAAACAAAAGGT+CGG | - | chr5.1:56711965-56711984 | MS.gene67270:CDS | 25.0% |
| !! | ATACTATTATTGTCTAAAGC+CGG | - | chr5.1:56711136-56711155 | MS.gene67270:intron | 25.0% |
| !! | TCAAATATTTTCCCTTCAAA+AGG | + | chr5.1:56710737-56710756 | None:intergenic | 25.0% |
| !! | TGTAAAGAGTTTCAATTTTC+AGG | - | chr5.1:56711607-56711626 | MS.gene67270:CDS | 25.0% |
| !!! | TATTTTTATGGTGCTTTGAT+AGG | - | chr5.1:56712204-56712223 | MS.gene67270:CDS | 25.0% |
| !!! | TCCATTTTTCTCTTTTTGTT+TGG | + | chr5.1:56712093-56712112 | None:intergenic | 25.0% |
| ACAAATTGGAGCATATTGTT+TGG | - | chr5.1:56711371-56711390 | MS.gene67270:CDS | 30.0% | |
| CAAATTGGAGCATATTGTTT+GGG | - | chr5.1:56711372-56711391 | MS.gene67270:CDS | 30.0% | |
| CATGTAATAAACTGCAATGA+TGG | - | chr5.1:56711745-56711764 | MS.gene67270:CDS | 30.0% | |
| GTAGTTACTAAGAGAAGAAT+TGG | - | chr5.1:56710992-56711011 | MS.gene67270:CDS | 30.0% | |
| TACTTATTAGGAGATTGAGA+AGG | + | chr5.1:56712123-56712142 | None:intergenic | 30.0% | |
| TCAAATATTTGCCCTTCAAA+AGG | + | chr5.1:56710629-56710648 | None:intergenic | 30.0% | |
| TCAAGAACATGTGATTGATT+TGG | - | chr5.1:56711897-56711916 | MS.gene67270:CDS | 30.0% | |
| ! | AATTGGCATTGAGGAAAAAT+GGG | - | chr5.1:56711009-56711028 | MS.gene67270:intron | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | - | chr5.1:56711689-56711708 | MS.gene67270:CDS | 30.0% |
| ! | GATATTTTCTAACTCTCTTG+TGG | + | chr5.1:56711848-56711867 | None:intergenic | 30.0% |
| !! | CCTGTTGTTTCAAAAACAAA+AGG | - | chr5.1:56711961-56711980 | MS.gene67270:CDS | 30.0% |
| !! | CGAAAAGGAAGATATTTTGA+TGG | + | chr5.1:56711688-56711707 | None:intergenic | 30.0% |
| !!! | CCTTTTGTTTTTGAAACAAC+AGG | + | chr5.1:56711964-56711983 | None:intergenic | 30.0% |
| AAGTCAATAACATTGACGAG+GGG | - | chr5.1:56710708-56710727 | MS.gene67270:CDS | 35.0% | |
| AAGTTTGAAAGATCGAGATG+AGG | - | chr5.1:56711315-56711334 | MS.gene67270:CDS | 35.0% | |
| ATCACATGTTCTTGAGTTTC+AGG | + | chr5.1:56711892-56711911 | None:intergenic | 35.0% | |
| ATGCGATCTTGATCAACAAT+TGG | + | chr5.1:56711118-56711137 | None:intergenic | 35.0% | |
| ATGTGATTGTAGTGCAAAGA+TGG | - | chr5.1:56710970-56710989 | MS.gene67270:CDS | 35.0% | |
| ATTGGAATGTTACGATAAGC+AGG | + | chr5.1:56711100-56711119 | None:intergenic | 35.0% | |
| CAACATCATACCAAAGTTGA+TGG | - | chr5.1:56711535-56711554 | MS.gene67270:CDS | 35.0% | |
| CAAGTCAATAACATTGACGA+GGG | - | chr5.1:56710707-56710726 | MS.gene67270:CDS | 35.0% | |
| CTCAAGTCACTAACATTGAT+GGG | - | chr5.1:56710597-56710616 | MS.gene67270:intron | 35.0% | |
| CTCATGTTGAAGCAACTTAA+AGG | + | chr5.1:56711458-56711477 | None:intergenic | 35.0% | |
| CTTGAGTTAGAGAAAAGAAC+AGG | - | chr5.1:56711187-56711206 | MS.gene67270:intron | 35.0% | |
| TAAGAGAAGAATTGGCATTG+AGG | - | chr5.1:56711000-56711019 | MS.gene67270:intron | 35.0% | |
| TAAGCAATGATGCTAGTGAT+TGG | - | chr5.1:56710567-56710586 | MS.gene67270:intron | 35.0% | |
| TAGAGACTGAAATTTAGCAG+AGG | + | chr5.1:56711773-56711792 | None:intergenic | 35.0% | |
| TCAAGTCAATAACATTGACG+AGG | - | chr5.1:56710706-56710725 | MS.gene67270:CDS | 35.0% | |
| TCAGTCTCTAATTCGATGTT+TGG | - | chr5.1:56711783-56711802 | MS.gene67270:CDS | 35.0% | |
| TGCTTTGATAGGATCATGAA+GGG | - | chr5.1:56712215-56712234 | MS.gene67270:CDS | 35.0% | |
| ! | GAATTGGCATTGAGGAAAAA+TGG | - | chr5.1:56711008-56711027 | MS.gene67270:intron | 35.0% |
| ! | TGAAGCAACTTAAAGGCATA+AGG | + | chr5.1:56711451-56711470 | None:intergenic | 35.0% |
| !! | AATGTTATTGACTTGAGGCA+AGG | + | chr5.1:56710702-56710721 | None:intergenic | 35.0% |
| !! | ACATGTGATTGATTTGGAAG+AGG | - | chr5.1:56711903-56711922 | MS.gene67270:CDS | 35.0% |
| !! | ATGTTATTGACTTGAGGCAA+GGG | + | chr5.1:56710701-56710720 | None:intergenic | 35.0% |
| !! | TCGTCAATGTTATTGACTTG+AGG | + | chr5.1:56710707-56710726 | None:intergenic | 35.0% |
| AAAACAAAAGGTCGGCCAAA+AGG | - | chr5.1:56711973-56711992 | MS.gene67270:CDS | 40.0% | |
| AAACCACGCAAAACTGTTGA+AGG | - | chr5.1:56710917-56710936 | MS.gene67270:CDS | 40.0% | |
| AAAGACAAGTGAACGAGAAC+AGG | - | chr5.1:56711819-56711838 | MS.gene67270:CDS | 40.0% | |
| AAAGGATCAAGACCAAAAGG+AGG | - | chr5.1:56711991-56712010 | MS.gene67270:CDS | 40.0% | |
| AACCACGCAAAACTGTTGAA+GGG | - | chr5.1:56710918-56710937 | MS.gene67270:CDS | 40.0% | |
| AAGGATCAAGACCAAAAGGA+GGG | - | chr5.1:56711992-56712011 | MS.gene67270:CDS | 40.0% | |
| AAGTCACTAACATTGATGGG+TGG | - | chr5.1:56710600-56710619 | MS.gene67270:intron | 40.0% | |
| AATGTTAGTGACTTGAGGCA+AGG | + | chr5.1:56710594-56710613 | None:intergenic | 40.0% | |
| ACTCTCGCTATAAGACTTAC+AGG | + | chr5.1:56711166-56711185 | None:intergenic | 40.0% | |
| ATAAGGTGTGAGTATAGACG+AGG | + | chr5.1:56711434-56711453 | None:intergenic | 40.0% | |
| ATCCATCGGGTGTTTATAAG+AGG | - | chr5.1:56710864-56710883 | MS.gene67270:CDS | 40.0% | |
| ATGTTAGTGACTTGAGGCAA+GGG | + | chr5.1:56710593-56710612 | None:intergenic | 40.0% | |
| CCAAAAGGATCAAGACCAAA+AGG | - | chr5.1:56711988-56712007 | MS.gene67270:CDS | 40.0% | |
| CCATCAATGTTAGTGACTTG+AGG | + | chr5.1:56710599-56710618 | None:intergenic | 40.0% | |
| CCTCAAGTCACTAACATTGA+TGG | - | chr5.1:56710596-56710615 | MS.gene67270:intron | 40.0% | |
| CGAGTTATTGGATGACAAAG+AGG | - | chr5.1:56711063-56711082 | MS.gene67270:intron | 40.0% | |
| CTCTCGCTATAAGACTTACA+GGG | + | chr5.1:56711165-56711184 | None:intergenic | 40.0% | |
| CTGTTGAAGGGGAAAATCAA+AGG | - | chr5.1:56710930-56710949 | MS.gene67270:CDS | 40.0% | |
| CTTTGTCATCCAATAACTCG+TGG | + | chr5.1:56711063-56711082 | None:intergenic | 40.0% | |
| GAGCATATTGTTTGGGCATT+TGG | - | chr5.1:56711379-56711398 | MS.gene67270:CDS | 40.0% | |
| GTGCTTTGATAGGATCATGA+AGG | - | chr5.1:56712214-56712233 | MS.gene67270:CDS | 40.0% | |
| TATAAGACTTACAGGGCAAC+CGG | + | chr5.1:56711158-56711177 | None:intergenic | 40.0% | |
| TATACGACCACCATCAACTT+TGG | + | chr5.1:56711548-56711567 | None:intergenic | 40.0% | |
| TCCATCGGGTGTTTATAAGA+GGG | - | chr5.1:56710865-56710884 | MS.gene67270:CDS | 40.0% | |
| TGTGTCTGAAGAGAATCCAT+CGG | - | chr5.1:56710850-56710869 | MS.gene67270:CDS | 40.0% | |
| TTAGAGAAAAGAACAGGCAC+AGG | - | chr5.1:56711193-56711212 | MS.gene67270:intron | 40.0% | |
| TTCTCACAACCACGAGTTAT+TGG | - | chr5.1:56711051-56711070 | MS.gene67270:intron | 40.0% | |
| TTGATAGGATCATGAAGGGT+TGG | - | chr5.1:56712219-56712238 | MS.gene67270:CDS | 40.0% | |
| TTGCACAACATAAGAGCCAT+TGG | + | chr5.1:56711518-56711537 | None:intergenic | 40.0% | |
| ! | AGGGAATTTGTTTGTCATCG+TGG | - | chr5.1:56710884-56710903 | MS.gene67270:CDS | 40.0% |
| ! | AGTCACTAACATTGATGGGT+GGG | - | chr5.1:56710601-56710620 | MS.gene67270:intron | 40.0% |
| ! | GAATTTGTTTGTCATCGTGG+TGG | - | chr5.1:56710887-56710906 | MS.gene67270:CDS | 40.0% |
| ! | TGATTAGTTCCACCACAATC+TGG | + | chr5.1:56712054-56712073 | None:intergenic | 40.0% |
| !! | CATCATACCAAAGTTGATGG+TGG | - | chr5.1:56711538-56711557 | MS.gene67270:CDS | 40.0% |
| !!! | CCTTTTGGTCTTGATCCTTT+TGG | + | chr5.1:56711991-56712010 | None:intergenic | 40.0% |
| AACGTCACAGTCAGCATTGT+TGG | + | chr5.1:56711935-56711954 | None:intergenic | 45.0% | |
| ACCACGCAAAACTGTTGAAG+GGG | - | chr5.1:56710919-56710938 | MS.gene67270:CDS | 45.0% | |
| AGGATCAAGACCAAAAGGAG+GGG | - | chr5.1:56711993-56712012 | MS.gene67270:CDS | 45.0% | |
| CGTTGTCATGTTCCAGATTG+TGG | - | chr5.1:56712039-56712058 | MS.gene67270:CDS | 45.0% | |
| CTTTCTCGTCTCCATCGAAA+AGG | + | chr5.1:56711703-56711722 | None:intergenic | 45.0% | |
| GTGTCTGAAGAGAATCCATC+GGG | - | chr5.1:56710851-56710870 | MS.gene67270:CDS | 45.0% | |
| GTTTGTCATCGTGGTGGTAT+TGG | - | chr5.1:56710893-56710912 | MS.gene67270:CDS | 45.0% | |
| TCCCTCTTATAAACACCCGA+TGG | + | chr5.1:56710869-56710888 | None:intergenic | 45.0% | |
| TGTCATGTTCCAGATTGTGG+TGG | - | chr5.1:56712042-56712061 | MS.gene67270:CDS | 45.0% | |
| ! | ACGAGGGGATTCCTTTTGAA+GGG | - | chr5.1:56710723-56710742 | MS.gene67270:CDS | 45.0% |
| ! | TGGCATTGAGGAAAAATGGG+TGG | - | chr5.1:56711012-56711031 | MS.gene67270:intron | 45.0% |
| !! | ATGGGTGGGTTCCTTTTGAA+GGG | - | chr5.1:56710615-56710634 | MS.gene67270:intron | 45.0% |
| ATGACAACGACGAGGCTTCT+TGG | + | chr5.1:56712028-56712047 | None:intergenic | 50.0% | |
| GCAGCAATTGAAGCTGCCAA+TGG | - | chr5.1:56711499-56711518 | MS.gene67270:CDS | 50.0% | |
| ! | GACGAGGGGATTCCTTTTGA+AGG | - | chr5.1:56710722-56710741 | MS.gene67270:CDS | 50.0% |
| ! | TCCCCTTCAACAGTTTTGCG+TGG | + | chr5.1:56710923-56710942 | None:intergenic | 50.0% |
| ! | TCTGGAACATGACAACGACG+AGG | + | chr5.1:56712036-56712055 | None:intergenic | 50.0% |
| !! | GATGGGTGGGTTCCTTTTGA+AGG | - | chr5.1:56710614-56710633 | MS.gene67270:intron | 50.0% |
| ! | GCAGCTTCAACCCCTCCTTT+TGG | + | chr5.1:56712006-56712025 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 56710554 | 56712247 | 56710554 | ID=MS.gene67270 |
| chr5.1 | mRNA | 56710554 | 56712247 | 56710554 | ID=MS.gene67270.t1;Parent=MS.gene67270 |
| chr5.1 | exon | 56711234 | 56712247 | 56711234 | ID=MS.gene67270.t1.exon1;Parent=MS.gene67270.t1 |
| chr5.1 | CDS | 56711234 | 56712247 | 56711234 | ID=cds.MS.gene67270.t1;Parent=MS.gene67270.t1 |
| chr5.1 | exon | 56710662 | 56711014 | 56710662 | ID=MS.gene67270.t1.exon2;Parent=MS.gene67270.t1 |
| chr5.1 | CDS | 56710662 | 56711014 | 56710662 | ID=cds.MS.gene67270.t1;Parent=MS.gene67270.t1 |
| chr5.1 | exon | 56710554 | 56710575 | 56710554 | ID=MS.gene67270.t1.exon3;Parent=MS.gene67270.t1 |
| chr5.1 | CDS | 56710554 | 56710575 | 56710554 | ID=cds.MS.gene67270.t1;Parent=MS.gene67270.t1 |
| Gene Sequence |
| Protein sequence |
