Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68462.t1 | XP_003600249.2 | 96.5 | 433 | 12 | 3 | 1 | 433 | 3 | 432 | 2.50E-217 | 764.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68462.t1 | G7J1I7 | 96.5 | 433 | 12 | 3 | 1 | 433 | 3 | 432 | 1.8e-217 | 764.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47603 | MS.gene68462 | PPI |
| MS.gene68462 | MS.gene016987 | PPI |
| MS.gene68462 | MS.gene038143 | PPI |
| MS.gene68462 | MS.gene038142 | PPI |
| MS.gene038202 | MS.gene68462 | PPI |
| MS.gene68462 | MS.gene70895 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68462.t1 | MTR_3g055960 | 97.691 | 433 | 7 | 3 | 1 | 433 | 3 | 432 | 0.0 | 857 |
| MS.gene68462.t1 | MTR_5g094340 | 71.494 | 435 | 104 | 8 | 1 | 433 | 1 | 417 | 0.0 | 603 |
| MS.gene68462.t1 | MTR_5g089720 | 37.108 | 415 | 218 | 9 | 53 | 433 | 32 | 437 | 4.72e-80 | 254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68462.t1 | AT5G55530 | 56.293 | 437 | 155 | 9 | 1 | 433 | 1 | 405 | 2.28e-156 | 448 |
| MS.gene68462.t1 | AT5G55530 | 56.293 | 437 | 155 | 9 | 1 | 433 | 1 | 405 | 2.28e-156 | 448 |
| MS.gene68462.t1 | AT5G55530 | 56.293 | 437 | 155 | 9 | 1 | 433 | 1 | 405 | 2.28e-156 | 448 |
| MS.gene68462.t1 | AT1G50570 | 54.156 | 397 | 149 | 9 | 40 | 433 | 22 | 388 | 4.07e-127 | 373 |
| MS.gene68462.t1 | AT1G50570 | 54.156 | 397 | 149 | 9 | 40 | 433 | 22 | 388 | 4.07e-127 | 373 |
| MS.gene68462.t1 | AT5G12300 | 45.641 | 195 | 89 | 5 | 56 | 241 | 21 | 207 | 2.19e-52 | 180 |
| MS.gene68462.t1 | AT5G12300 | 44.872 | 78 | 28 | 2 | 371 | 433 | 297 | 374 | 4.59e-12 | 67.8 |
Find 100 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTCTAGTTTACCATTC+TGG | 0.234179 | 3.4:-52640870 | None:intergenic |
| TTAATGGTTTCGGAATATTT+TGG | 0.254413 | 3.4:+52641114 | MS.gene68462:CDS |
| CCAAGTCATGAACAAGTTTC+AGG | 0.260250 | 3.4:+52641378 | MS.gene68462:CDS |
| GATCTGTTTCATTCTCCTTC+AGG | 0.261707 | 3.4:+52640913 | MS.gene68462:CDS |
| TGGTCTTCGTTTGCAATCTT+AGG | 0.278614 | 3.4:-52641090 | None:intergenic |
| TGCAAACGAAGACCACTTAA+TGG | 0.284606 | 3.4:+52641098 | MS.gene68462:CDS |
| ACAATCTTCGTCTCAATGTT+TGG | 0.296293 | 3.4:+52640737 | MS.gene68462:CDS |
| ATTGACTTCAATGTCCTTAG+AGG | 0.297181 | 3.4:-52640515 | None:intergenic |
| GTCTCTACTAAGACCATTAA+TGG | 0.304090 | 3.4:+52640688 | MS.gene68462:CDS |
| GTTCCTTCCACCTCCATTAA+TGG | 0.307297 | 3.4:-52640701 | None:intergenic |
| TGAGTCATTGGCCAGAGATT+TGG | 0.310125 | 3.4:+52641047 | MS.gene68462:CDS |
| TGCTGAACCATCTGCGGCTC+TGG | 0.358153 | 3.4:-52641507 | None:intergenic |
| CCTGAAACTTGTTCATGACT+TGG | 0.362546 | 3.4:-52641378 | None:intergenic |
| CGGTGCTACACCTGATGTTA+TGG | 0.365739 | 3.4:+52640963 | MS.gene68462:CDS |
| CGAAGACCACTTAATGGTTT+CGG | 0.367450 | 3.4:+52641104 | MS.gene68462:CDS |
| TCGTTTGCAATCTTAGGATC+TGG | 0.377435 | 3.4:-52641084 | None:intergenic |
| CAATCTTCGTCTCAATGTTT+GGG | 0.390020 | 3.4:+52640738 | MS.gene68462:CDS |
| AAGCAACGGTCCTTCCTCTA+AGG | 0.393297 | 3.4:+52640501 | MS.gene68462:CDS |
| GAAAGTGAACCAACTACTTC+AGG | 0.397702 | 3.4:+52641609 | MS.gene68462:CDS |
| CCAAGCAGTGTGTCGACAAA+TGG | 0.402778 | 3.4:+52641288 | MS.gene68462:CDS |
| CTTGAATTTCCTGAAGTAGT+TGG | 0.407339 | 3.4:-52641618 | None:intergenic |
| CCCTTTAGAACCTCAGTCTT+GGG | 0.408315 | 3.4:+52640439 | MS.gene68462:CDS |
| CTGAAACTTGTTCATGACTT+GGG | 0.410201 | 3.4:-52641377 | None:intergenic |
| TTAGTAGAGACGCTGTTCTC+TGG | 0.413884 | 3.4:-52640676 | None:intergenic |
| TTCACAGTCACAACAGGCTT+AGG | 0.428362 | 3.4:-52641477 | None:intergenic |
| CAAGCAGTGTGTCGACAAAT+GGG | 0.428739 | 3.4:+52641289 | MS.gene68462:CDS |
| TCTAAGGACATTGAAGTCAA+TGG | 0.431544 | 3.4:+52640517 | MS.gene68462:CDS |
| TGTTCTCTGGATTACTTGTC+AGG | 0.437065 | 3.4:-52640663 | None:intergenic |
| GTGAGCTATGGATGCTTAGC+AGG | 0.442573 | 3.4:+52640782 | MS.gene68462:CDS |
| CTCGGAAACATGTGAGTCAT+TGG | 0.443554 | 3.4:+52641035 | MS.gene68462:CDS |
| CCCAAGACTGAGGTTCTAAA+GGG | 0.451045 | 3.4:-52640439 | None:intergenic |
| GACTCAGTGCTCTGATAGCT+TGG | 0.460570 | 3.4:+52641152 | MS.gene68462:CDS |
| TATCTTGAAGATCAGTTGCT+TGG | 0.461888 | 3.4:+52640814 | MS.gene68462:CDS |
| CTAAGGACATTGAAGTCAAT+GGG | 0.464490 | 3.4:+52640518 | MS.gene68462:CDS |
| ACCCTTTAGAACCTCAGTCT+TGG | 0.466024 | 3.4:+52640438 | MS.gene68462:CDS |
| TCAATATTCACAGTCACAAC+AGG | 0.469854 | 3.4:-52641483 | None:intergenic |
| ACCCAAGACTGAGGTTCTAA+AGG | 0.472225 | 3.4:-52640440 | None:intergenic |
| GGAAGCTGGTGTTCGTCTTG+TGG | 0.480983 | 3.4:+52641203 | MS.gene68462:CDS |
| TGATGCTGAAAATCATAGTT+CGG | 0.482073 | 3.4:+52641182 | MS.gene68462:CDS |
| ATCTGCTATGCCGGGGAAAG+TGG | 0.488327 | 3.4:+52640990 | MS.gene68462:CDS |
| TATGGCAATATCTGCTATGC+CGG | 0.490303 | 3.4:+52640981 | MS.gene68462:CDS |
| TGCGCAAGTGGAACCTCCTA+AGG | 0.490411 | 3.4:+52641254 | MS.gene68462:CDS |
| TAGAACCTCAGTCTTGGGTG+AGG | 0.492450 | 3.4:+52640444 | MS.gene68462:CDS |
| CTTGGTGGAGACTCAACCTT+AGG | 0.499060 | 3.4:-52641270 | None:intergenic |
| GCAGATATTGCCATAACATC+AGG | 0.499230 | 3.4:-52640973 | None:intergenic |
| ATGGCAATATCTGCTATGCC+GGG | 0.503138 | 3.4:+52640982 | MS.gene68462:CDS |
| TCACAGTCACAACAGGCTTA+GGG | 0.508245 | 3.4:-52641476 | None:intergenic |
| CCATTTGTCGACACACTGCT+TGG | 0.508473 | 3.4:-52641288 | None:intergenic |
| AGAGCCGCAGATGGTTCAGC+AGG | 0.512099 | 3.4:+52641509 | MS.gene68462:CDS |
| AATATTCCGAAACCATTAAG+TGG | 0.512567 | 3.4:-52641110 | None:intergenic |
| GAAAATCATAGTTCGGAAGC+TGG | 0.519872 | 3.4:+52641189 | MS.gene68462:CDS |
| AGCGAAAATGAAGCTTCCTA+TGG | 0.519913 | 3.4:+52641581 | MS.gene68462:CDS |
| GGGTTAGCGTTCTTAGTTTG+CGG | 0.519999 | 3.4:-52641657 | None:intergenic |
| AGGGTGATACAACAGATTGT+GGG | 0.523722 | 3.4:-52640420 | None:intergenic |
| AAGGGTGATACAACAGATTG+TGG | 0.527553 | 3.4:-52640421 | None:intergenic |
| CGTCTCTCAAATGTGAGCTA+TGG | 0.528137 | 3.4:+52640770 | MS.gene68462:CDS |
| ACTAAGACCATTAATGGAGG+TGG | 0.529485 | 3.4:+52640694 | MS.gene68462:CDS |
| ACATGTGTAGCCACTTTCCC+CGG | 0.538816 | 3.4:-52641000 | None:intergenic |
| TGAAACTTGTTCATGACTTG+GGG | 0.539460 | 3.4:-52641376 | None:intergenic |
| GGCTACACATGTCACTCAGC+AGG | 0.540185 | 3.4:+52641011 | MS.gene68462:CDS |
| AAGCACTCCAACACATTCCT+CGG | 0.541462 | 3.4:-52640563 | None:intergenic |
| CTCTGCTTCCATAATAGACA+CGG | 0.542849 | 3.4:-52641680 | None:intergenic |
| GGTGGAGACTCAACCTTAGG+AGG | 0.548492 | 3.4:-52641267 | None:intergenic |
| TTTGTCGACACACTGCTTGG+TGG | 0.552483 | 3.4:-52641285 | None:intergenic |
| GGTTCACTTTCAATGTCCAT+AGG | 0.554954 | 3.4:-52641597 | None:intergenic |
| TCTGAGCTTTCATGAGCAGA+AGG | 0.558176 | 3.4:-52641321 | None:intergenic |
| CGAAGATTGTCGTTAAACAC+AGG | 0.561622 | 3.4:-52640724 | None:intergenic |
| CAGTGGTGAGTCTGCGCAAG+TGG | 0.564989 | 3.4:+52641242 | MS.gene68462:CDS |
| TAGCATAAACATCTTGCTTG+TGG | 0.568663 | 3.4:-52640633 | None:intergenic |
| ACTTCAATGTCCTTAGAGGA+AGG | 0.576019 | 3.4:-52640511 | None:intergenic |
| TGTAGCACCGGTGTAAGCAA+TGG | 0.580116 | 3.4:-52640950 | None:intergenic |
| CAATTGTCCATTGCTTACAC+CGG | 0.580933 | 3.4:+52640943 | MS.gene68462:CDS |
| GGAAGGACCGTTGCTTTGTG+TGG | 0.589066 | 3.4:-52640494 | None:intergenic |
| AGAACCTCAGTCTTGGGTGA+GGG | 0.590332 | 3.4:+52640445 | MS.gene68462:CDS |
| AACTATCATGTCAAATGCCG+AGG | 0.594132 | 3.4:+52640546 | MS.gene68462:CDS |
| ACATGTCACTCAGCAGGACT+CGG | 0.594812 | 3.4:+52641017 | MS.gene68462:CDS |
| GGACATTGAAGTCAATGGGA+AGG | 0.601234 | 3.4:+52640522 | MS.gene68462:CDS |
| CATAACATCAGGTGTAGCAC+CGG | 0.601546 | 3.4:-52640962 | None:intergenic |
| TCAGAAGTGCTAGTCCAGAA+TGG | 0.601594 | 3.4:+52640856 | MS.gene68462:CDS |
| TCTGCTTCCATAATAGACAC+GGG | 0.601885 | 3.4:-52641679 | None:intergenic |
| GACAATTGAACAAAACCTGA+AGG | 0.605270 | 3.4:-52640928 | None:intergenic |
| TATTGAGCCAGAGCCGCAGA+TGG | 0.613301 | 3.4:+52641500 | MS.gene68462:CDS |
| ATATCCTGCTGAACCATCTG+CGG | 0.615970 | 3.4:-52641513 | None:intergenic |
| ATCACTCGGAACAACACTTG+AGG | 0.627514 | 3.4:-52641448 | None:intergenic |
| CTGCTTCCATAATAGACACG+GGG | 0.629788 | 3.4:-52641678 | None:intergenic |
| GGGTGATACAACAGATTGTG+GGG | 0.631149 | 3.4:-52640419 | None:intergenic |
| GGCTTAGGGAATAAATCACT+CGG | 0.633496 | 3.4:-52641462 | None:intergenic |
| TCAAATGCCGAGGAATGTGT+TGG | 0.636042 | 3.4:+52640556 | MS.gene68462:CDS |
| AGACCATTAATGGAGGTGGA+AGG | 0.648853 | 3.4:+52640698 | MS.gene68462:CDS |
| TGGACTAGCACTTCTGACAA+CGG | 0.653528 | 3.4:-52640850 | None:intergenic |
| TGGCAATATCTGCTATGCCG+GGG | 0.667680 | 3.4:+52640983 | MS.gene68462:CDS |
| ACAAGTTTCAGGAACCAAAG+AGG | 0.670665 | 3.4:+52641389 | MS.gene68462:CDS |
| CTCACCCTCACCCAAGACTG+AGG | 0.674424 | 3.4:-52640449 | None:intergenic |
| GATGTTACCACACAAAGCAA+CGG | 0.679929 | 3.4:+52640487 | MS.gene68462:CDS |
| GAAGATTGTCGTTAAACACA+GGG | 0.680691 | 3.4:-52640723 | None:intergenic |
| AAGCAGTGTGTCGACAAATG+GGG | 0.683408 | 3.4:+52641290 | MS.gene68462:CDS |
| TCTACTAAGACCATTAATGG+AGG | 0.693051 | 3.4:+52640691 | MS.gene68462:CDS |
| GAAAGCTTCTCAGCATGCAG+TGG | 0.698296 | 3.4:+52641225 | MS.gene68462:CDS |
| TGAGCTATGGATGCTTAGCA+GGG | 0.703627 | 3.4:+52640783 | MS.gene68462:CDS |
| TGCTTCCATAATAGACACGG+GGG | 0.772529 | 3.4:-52641677 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATGGTTTCGGAATATTT+TGG | + | chr3.4:52641114-52641133 | MS.gene68462:CDS | 25.0% |
| !!! | ATGTTTTTATACATCAAGCT+AGG | + | chr3.4:52640587-52640606 | MS.gene68462:CDS | 25.0% |
| !!! | TGTTTTTATACATCAAGCTA+GGG | + | chr3.4:52640588-52640607 | MS.gene68462:CDS | 25.0% |
| AAAAAAGTGGATGTCAAAGA+CGG | + | chr3.4:52641414-52641433 | MS.gene68462:CDS | 30.0% | |
| AACCAAAGAGGTAAAAAAAG+TGG | + | chr3.4:52641401-52641420 | MS.gene68462:CDS | 30.0% | |
| AATATTCCGAAACCATTAAG+TGG | - | chr3.4:52641113-52641132 | None:intergenic | 30.0% | |
| TGATGCTGAAAATCATAGTT+CGG | + | chr3.4:52641182-52641201 | MS.gene68462:CDS | 30.0% | |
| ! | CTCAATTTTATCCAAATCTC+TGG | - | chr3.4:52641061-52641080 | None:intergenic | 30.0% |
| !!! | ATCCACTTTTTTTACCTCTT+TGG | - | chr3.4:52641406-52641425 | None:intergenic | 30.0% |
| ACAATCTTCGTCTCAATGTT+TGG | + | chr3.4:52640737-52640756 | MS.gene68462:CDS | 35.0% | |
| CAATCTTCGTCTCAATGTTT+GGG | + | chr3.4:52640738-52640757 | MS.gene68462:CDS | 35.0% | |
| CTAAGGACATTGAAGTCAAT+GGG | + | chr3.4:52640518-52640537 | MS.gene68462:CDS | 35.0% | |
| CTTGAATTTCCTGAAGTAGT+TGG | - | chr3.4:52641621-52641640 | None:intergenic | 35.0% | |
| GAAGATTGTCGTTAAACACA+GGG | - | chr3.4:52640726-52640745 | None:intergenic | 35.0% | |
| GACAATTGAACAAAACCTGA+AGG | - | chr3.4:52640931-52640950 | None:intergenic | 35.0% | |
| GTCTCTACTAAGACCATTAA+TGG | + | chr3.4:52640688-52640707 | MS.gene68462:CDS | 35.0% | |
| TAGCATAAACATCTTGCTTG+TGG | - | chr3.4:52640636-52640655 | None:intergenic | 35.0% | |
| TATCTTGAAGATCAGTTGCT+TGG | + | chr3.4:52640814-52640833 | MS.gene68462:CDS | 35.0% | |
| TCAATATTCACAGTCACAAC+AGG | - | chr3.4:52641486-52641505 | None:intergenic | 35.0% | |
| TCTAAGGACATTGAAGTCAA+TGG | + | chr3.4:52640517-52640536 | MS.gene68462:CDS | 35.0% | |
| TCTACTAAGACCATTAATGG+AGG | + | chr3.4:52640691-52640710 | MS.gene68462:CDS | 35.0% | |
| ! | ATTGACTTCAATGTCCTTAG+AGG | - | chr3.4:52640518-52640537 | None:intergenic | 35.0% |
| ! | CTGAAACTTGTTCATGACTT+GGG | - | chr3.4:52641380-52641399 | None:intergenic | 35.0% |
| ! | CTTTCTCTAGTTTACCATTC+TGG | - | chr3.4:52640873-52640892 | None:intergenic | 35.0% |
| ! | TGAAACTTGTTCATGACTTG+GGG | - | chr3.4:52641379-52641398 | None:intergenic | 35.0% |
| AACTATCATGTCAAATGCCG+AGG | + | chr3.4:52640546-52640565 | MS.gene68462:CDS | 40.0% | |
| AAGGGTGATACAACAGATTG+TGG | - | chr3.4:52640424-52640443 | None:intergenic | 40.0% | |
| ACAAGTTTCAGGAACCAAAG+AGG | + | chr3.4:52641389-52641408 | MS.gene68462:CDS | 40.0% | |
| ACTAAGACCATTAATGGAGG+TGG | + | chr3.4:52640694-52640713 | MS.gene68462:CDS | 40.0% | |
| ACTTCAATGTCCTTAGAGGA+AGG | - | chr3.4:52640514-52640533 | None:intergenic | 40.0% | |
| AGCGAAAATGAAGCTTCCTA+TGG | + | chr3.4:52641581-52641600 | MS.gene68462:CDS | 40.0% | |
| AGGGTGATACAACAGATTGT+GGG | - | chr3.4:52640423-52640442 | None:intergenic | 40.0% | |
| CAATTGTCCATTGCTTACAC+CGG | + | chr3.4:52640943-52640962 | MS.gene68462:CDS | 40.0% | |
| CCAAGTCATGAACAAGTTTC+AGG | + | chr3.4:52641378-52641397 | MS.gene68462:CDS | 40.0% | |
| CGAAGACCACTTAATGGTTT+CGG | + | chr3.4:52641104-52641123 | MS.gene68462:CDS | 40.0% | |
| CGAAGATTGTCGTTAAACAC+AGG | - | chr3.4:52640727-52640746 | None:intergenic | 40.0% | |
| CTCTGCTTCCATAATAGACA+CGG | - | chr3.4:52641683-52641702 | None:intergenic | 40.0% | |
| GAAAATCATAGTTCGGAAGC+TGG | + | chr3.4:52641189-52641208 | MS.gene68462:CDS | 40.0% | |
| GAAAGTGAACCAACTACTTC+AGG | + | chr3.4:52641609-52641628 | MS.gene68462:CDS | 40.0% | |
| GATCTGTTTCATTCTCCTTC+AGG | + | chr3.4:52640913-52640932 | MS.gene68462:CDS | 40.0% | |
| GATGTTACCACACAAAGCAA+CGG | + | chr3.4:52640487-52640506 | MS.gene68462:CDS | 40.0% | |
| GCAGATATTGCCATAACATC+AGG | - | chr3.4:52640976-52640995 | None:intergenic | 40.0% | |
| GGCTTAGGGAATAAATCACT+CGG | - | chr3.4:52641465-52641484 | None:intergenic | 40.0% | |
| GGTTCACTTTCAATGTCCAT+AGG | - | chr3.4:52641600-52641619 | None:intergenic | 40.0% | |
| TATGGCAATATCTGCTATGC+CGG | + | chr3.4:52640981-52641000 | MS.gene68462:CDS | 40.0% | |
| TCGTTTGCAATCTTAGGATC+TGG | - | chr3.4:52641087-52641106 | None:intergenic | 40.0% | |
| TCTGCTTCCATAATAGACAC+GGG | - | chr3.4:52641682-52641701 | None:intergenic | 40.0% | |
| TGCAAACGAAGACCACTTAA+TGG | + | chr3.4:52641098-52641117 | MS.gene68462:CDS | 40.0% | |
| TGGTCTTCGTTTGCAATCTT+AGG | - | chr3.4:52641093-52641112 | None:intergenic | 40.0% | |
| TGTTCTCTGGATTACTTGTC+AGG | - | chr3.4:52640666-52640685 | None:intergenic | 40.0% | |
| ! | CCTGAAACTTGTTCATGACT+TGG | - | chr3.4:52641381-52641400 | None:intergenic | 40.0% |
| !!! | ATATTTTGGCATTTCGTGCG+AGG | + | chr3.4:52641128-52641147 | MS.gene68462:CDS | 40.0% |
| !!! | TCAGTTGCTTGGTTTTGCTT+TGG | + | chr3.4:52640825-52640844 | MS.gene68462:CDS | 40.0% |
| AAGCACTCCAACACATTCCT+CGG | - | chr3.4:52640566-52640585 | None:intergenic | 45.0% | |
| AGACCATTAATGGAGGTGGA+AGG | + | chr3.4:52640698-52640717 | MS.gene68462:CDS | 45.0% | |
| ATATCCTGCTGAACCATCTG+CGG | - | chr3.4:52641516-52641535 | None:intergenic | 45.0% | |
| ATCACTCGGAACAACACTTG+AGG | - | chr3.4:52641451-52641470 | None:intergenic | 45.0% | |
| ATGGCAATATCTGCTATGCC+GGG | + | chr3.4:52640982-52641001 | MS.gene68462:CDS | 45.0% | |
| CATAACATCAGGTGTAGCAC+CGG | - | chr3.4:52640965-52640984 | None:intergenic | 45.0% | |
| CGTCTCTCAAATGTGAGCTA+TGG | + | chr3.4:52640770-52640789 | MS.gene68462:CDS | 45.0% | |
| CTCGGAAACATGTGAGTCAT+TGG | + | chr3.4:52641035-52641054 | MS.gene68462:CDS | 45.0% | |
| CTGCTTCCATAATAGACACG+GGG | - | chr3.4:52641681-52641700 | None:intergenic | 45.0% | |
| GGACATTGAAGTCAATGGGA+AGG | + | chr3.4:52640522-52640541 | MS.gene68462:CDS | 45.0% | |
| GGGTGATACAACAGATTGTG+GGG | - | chr3.4:52640422-52640441 | None:intergenic | 45.0% | |
| GTTCCTTCCACCTCCATTAA+TGG | - | chr3.4:52640704-52640723 | None:intergenic | 45.0% | |
| TCAAATGCCGAGGAATGTGT+TGG | + | chr3.4:52640556-52640575 | MS.gene68462:CDS | 45.0% | |
| TCACAGTCACAACAGGCTTA+GGG | - | chr3.4:52641479-52641498 | None:intergenic | 45.0% | |
| TCTGAGCTTTCATGAGCAGA+AGG | - | chr3.4:52641324-52641343 | None:intergenic | 45.0% | |
| TGAGCTATGGATGCTTAGCA+GGG | + | chr3.4:52640783-52640802 | MS.gene68462:CDS | 45.0% | |
| TGAGTCATTGGCCAGAGATT+TGG | + | chr3.4:52641047-52641066 | MS.gene68462:CDS | 45.0% | |
| TGCTTCCATAATAGACACGG+GGG | - | chr3.4:52641680-52641699 | None:intergenic | 45.0% | |
| TTAGTAGAGACGCTGTTCTC+TGG | - | chr3.4:52640679-52640698 | None:intergenic | 45.0% | |
| TTCACAGTCACAACAGGCTT+AGG | - | chr3.4:52641480-52641499 | None:intergenic | 45.0% | |
| ! | AAGCAGTGTGTCGACAAATG+GGG | + | chr3.4:52641290-52641309 | MS.gene68462:CDS | 45.0% |
| ! | ACCCAAGACTGAGGTTCTAA+AGG | - | chr3.4:52640443-52640462 | None:intergenic | 45.0% |
| ! | CAAGCAGTGTGTCGACAAAT+GGG | + | chr3.4:52641289-52641308 | MS.gene68462:CDS | 45.0% |
| ! | GGGTTAGCGTTCTTAGTTTG+CGG | - | chr3.4:52641660-52641679 | None:intergenic | 45.0% |
| !! | ACCCTTTAGAACCTCAGTCT+TGG | + | chr3.4:52640438-52640457 | MS.gene68462:CDS | 45.0% |
| !! | CCCAAGACTGAGGTTCTAAA+GGG | - | chr3.4:52640442-52640461 | None:intergenic | 45.0% |
| !! | CCCTTTAGAACCTCAGTCTT+GGG | + | chr3.4:52640439-52640458 | MS.gene68462:CDS | 45.0% |
| !! | TCAGAAGTGCTAGTCCAGAA+TGG | + | chr3.4:52640856-52640875 | MS.gene68462:CDS | 45.0% |
| !! | TGGACTAGCACTTCTGACAA+CGG | - | chr3.4:52640853-52640872 | None:intergenic | 45.0% |
| AAGCAACGGTCCTTCCTCTA+AGG | + | chr3.4:52640501-52640520 | MS.gene68462:CDS | 50.0% | |
| ACATGTCACTCAGCAGGACT+CGG | + | chr3.4:52641017-52641036 | MS.gene68462:CDS | 50.0% | |
| AGAACCTCAGTCTTGGGTGA+GGG | + | chr3.4:52640445-52640464 | MS.gene68462:CDS | 50.0% | |
| CCATTTGTCGACACACTGCT+TGG | - | chr3.4:52641291-52641310 | None:intergenic | 50.0% | |
| CTTGGTGGAGACTCAACCTT+AGG | - | chr3.4:52641273-52641292 | None:intergenic | 50.0% | |
| GAAAGCTTCTCAGCATGCAG+TGG | + | chr3.4:52641225-52641244 | MS.gene68462:CDS | 50.0% | |
| GACTCAGTGCTCTGATAGCT+TGG | + | chr3.4:52641152-52641171 | MS.gene68462:CDS | 50.0% | |
| GCTAACCCCCGTGTCTATTA+TGG | + | chr3.4:52641672-52641691 | MS.gene68462:CDS | 50.0% | |
| GTGAGCTATGGATGCTTAGC+AGG | + | chr3.4:52640782-52640801 | MS.gene68462:CDS | 50.0% | |
| TAGAACCTCAGTCTTGGGTG+AGG | + | chr3.4:52640444-52640463 | MS.gene68462:CDS | 50.0% | |
| TGGCAATATCTGCTATGCCG+GGG | + | chr3.4:52640983-52641002 | MS.gene68462:CDS | 50.0% | |
| TTTGTCGACACACTGCTTGG+TGG | - | chr3.4:52641288-52641307 | None:intergenic | 50.0% | |
| ! | ACATGTGTAGCCACTTTCCC+CGG | - | chr3.4:52641003-52641022 | None:intergenic | 50.0% |
| ! | CCAAGCAGTGTGTCGACAAA+TGG | + | chr3.4:52641288-52641307 | MS.gene68462:CDS | 50.0% |
| !! | CGGTGCTACACCTGATGTTA+TGG | + | chr3.4:52640963-52640982 | MS.gene68462:CDS | 50.0% |
| !! | TGTAGCACCGGTGTAAGCAA+TGG | - | chr3.4:52640953-52640972 | None:intergenic | 50.0% |
| ATCTGCTATGCCGGGGAAAG+TGG | + | chr3.4:52640990-52641009 | MS.gene68462:CDS | 55.0% | |
| GGAAGCTGGTGTTCGTCTTG+TGG | + | chr3.4:52641203-52641222 | MS.gene68462:CDS | 55.0% | |
| GGCTACACATGTCACTCAGC+AGG | + | chr3.4:52641011-52641030 | MS.gene68462:CDS | 55.0% | |
| GGTGGAGACTCAACCTTAGG+AGG | - | chr3.4:52641270-52641289 | None:intergenic | 55.0% | |
| TATTGAGCCAGAGCCGCAGA+TGG | + | chr3.4:52641500-52641519 | MS.gene68462:CDS | 55.0% | |
| TGCGCAAGTGGAACCTCCTA+AGG | + | chr3.4:52641254-52641273 | MS.gene68462:CDS | 55.0% | |
| ! | GGAAGGACCGTTGCTTTGTG+TGG | - | chr3.4:52640497-52640516 | None:intergenic | 55.0% |
| AGAGCCGCAGATGGTTCAGC+AGG | + | chr3.4:52641509-52641528 | MS.gene68462:CDS | 60.0% | |
| CAGTGGTGAGTCTGCGCAAG+TGG | + | chr3.4:52641242-52641261 | MS.gene68462:CDS | 60.0% | |
| CTCACCCTCACCCAAGACTG+AGG | - | chr3.4:52640452-52640471 | None:intergenic | 60.0% | |
| TGCTGAACCATCTGCGGCTC+TGG | - | chr3.4:52641510-52641529 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 52640412 | 52641713 | 52640412 | ID=MS.gene68462 |
| chr3.4 | mRNA | 52640412 | 52641713 | 52640412 | ID=MS.gene68462.t1;Parent=MS.gene68462 |
| chr3.4 | exon | 52640412 | 52641713 | 52640412 | ID=MS.gene68462.t1.exon1;Parent=MS.gene68462.t1 |
| chr3.4 | CDS | 52640412 | 52641713 | 52640412 | ID=cds.MS.gene68462.t1;Parent=MS.gene68462.t1 |
| Gene Sequence |
| Protein sequence |
