AlfalfaGEDB | MS.gene68637

M. sativa cultivar XinJiangDaYe / MS.gene68637

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24 PF06507.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68637.t1	XP_013465298.1	81.8	699	22	8	1	594	1	699	8.90E-295	1022.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68637.t1	Q9SKN5	50.1	727	191	21	3	593	2	692	3.8e-169	596.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68637.t1	G7IRU1	81.8	699	22	8	1	594	57	755	6.5e-295	1022.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene68637.t1	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049758	MS.gene68637	0.802648	5.08E-49	-1.69E-46
MS.gene050762	MS.gene68637	0.820794	5.68E-53	-1.69E-46
MS.gene050763	MS.gene68637	0.82285	1.90E-53	-1.69E-46
MS.gene054379	MS.gene68637	0.803483	3.41E-49	-1.69E-46
MS.gene056400	MS.gene68637	0.817624	2.99E-52	-1.69E-46
MS.gene058182	MS.gene68637	0.803522	3.35E-49	-1.69E-46
MS.gene060084	MS.gene68637	0.812999	3.20E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene29035	MS.gene68637	PPI
MS.gene30749	MS.gene68637	PPI
MS.gene35641	MS.gene68637	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68637.t1	MTR_2g094570	82.546	699	17	8	1	594	57	755	0.0	1120
MS.gene68637.t1	MTR_2g094570	82.546	699	17	8	1	594	1	699	0.0	1119
MS.gene68637.t1	MTR_2g094570	81.011	653	19	8	1	548	1	653	0.0	1021
MS.gene68637.t1	MTR_4g058930	61.798	712	140	16	1	594	1	698	0.0	761
MS.gene68637.t1	MTR_4g058930	61.606	685	131	16	1	567	1	671	0.0	727
MS.gene68637.t1	MTR_1g064430	51.391	683	196	18	2	561	31	700	0.0	610
MS.gene68637.t1	MTR_1g064430	51.245	683	197	17	2	561	18	687	0.0	610
MS.gene68637.t1	MTR_1g094960	50.980	561	157	12	2	445	10	569	7.13e-165	484
MS.gene68637.t1	MTR_7g101280	42.308	676	214	21	1	566	21	630	1.03e-148	444
MS.gene68637.t1	MTR_0041s0110	42.308	676	214	21	1	566	21	630	1.03e-148	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68637.t1	AT2G28350	49.931	723	200	21	3	594	2	693	0.0	603
MS.gene68637.t1	AT4G30080	50.751	666	210	16	5	564	13	666	0.0	591
MS.gene68637.t1	AT2G28350	49.498	697	190	21	3	568	2	667	0.0	571
MS.gene68637.t1	AT1G77850	35.507	552	242	17	6	454	14	554	1.37e-89	289
MS.gene68637.t1	AT1G77850	35.507	552	242	17	6	454	14	554	1.54e-89	288
MS.gene68637.t1	AT5G62000	36.788	386	157	12	4	325	48	410	1.93e-60	216
MS.gene68637.t1	AT5G62000	36.788	386	157	12	4	325	48	410	2.30e-60	216
MS.gene68637.t1	AT5G62000	36.788	386	157	12	4	325	48	410	2.30e-60	216
MS.gene68637.t1	AT5G62000	36.788	386	157	12	4	325	48	410	2.30e-60	216
MS.gene68637.t1	AT5G62000	36.788	386	157	12	4	325	48	410	2.30e-60	216

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Find 122 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTTGCCTGAAATGT+TGG	0.488726	2.1:-8680707	None:intergenic
AAACGGAGTTTCTTCCTTGG+TGG	0.510040	2.1:-8680638	None:intergenic
AAACTGGTGAAGAACCCTTC+AGG	0.541832	2.1:+8681398	MS.gene68637:CDS
AAAGCTTAGATCCACAACTA+TGG	0.458962	2.1:+8678698	MS.gene68637:CDS
AAAGTCAGCACTAGCACTAG+TGG	0.602500	2.1:-8681183	None:intergenic
AAAGTCTTTGCAAAAGATGC+AGG	0.501554	2.1:-8678993	None:intergenic
AACAACAACAAATTTCAGTT+AGG	0.435844	2.1:+8680838	MS.gene68637:CDS
AACCTAATTGCAGGTCACTT+GGG	0.568780	2.1:+8680520	MS.gene68637:intron
AACTCAGGAGTACTTGCTCT+AGG	0.603509	2.1:-8679516	None:intergenic
AAGATTCTTCTAGGATTAGT+TGG	0.415313	2.1:+8679622	MS.gene68637:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACCTTGATTGAACTTA+TGG	+	chr2.1:8680493-8680512	MS.gene68637:intron	30.0%
AAGCTGCTATGAAAATTCAA+TGG	+	chr2.1:8679562-8679581	MS.gene68637:CDS	30.0%
AAGTTTAGGCATATCTATAG+AGG	+	chr2.1:8679154-8679173	MS.gene68637:CDS	30.0%
ACTAATCCTAGAAGAATCTT+CGG	-	chr2.1:8679622-8679641	None:intergenic	30.0%
AGCAAACATGGATAAGTATT+TGG	+	chr2.1:8680339-8680358	MS.gene68637:intron	30.0%
ATACAACACAAAGGGTTAAA+AGG	-	chr2.1:8680727-8680746	None:intergenic	30.0%
ATGAAAATTCAATGGTGTTC+TGG	+	chr2.1:8679570-8679589	MS.gene68637:CDS	30.0%
ATTAGATACTGGTCATTGTA+AGG	+	chr2.1:8681220-8681239	MS.gene68637:CDS	30.0%
CATATTCATGAATTAAGCCT+TGG	-	chr2.1:8680065-8680084	None:intergenic	30.0%
CCAAAACAAATTCCAAACAT+AGG	-	chr2.1:8679753-8679772	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	8678682	8681767	8678682	ID=MS.gene68637
chr2.1	mRNA	8678682	8681767	8678682	ID=MS.gene68637.t1;Parent=MS.gene68637
chr2.1	exon	8678682	8678813	8678682	ID=MS.gene68637.t1.exon1;Parent=MS.gene68637.t1
chr2.1	CDS	8678682	8678813	8678682	ID=cds.MS.gene68637.t1;Parent=MS.gene68637.t1
chr2.1	exon	8678915	8679052	8678915	ID=MS.gene68637.t1.exon2;Parent=MS.gene68637.t1
chr2.1	CDS	8678915	8679052	8678915	ID=cds.MS.gene68637.t1;Parent=MS.gene68637.t1
chr2.1	exon	8679106	8679349	8679106	ID=MS.gene68637.t1.exon3;Parent=MS.gene68637.t1
chr2.1	CDS	8679106	8679349	8679106	ID=cds.MS.gene68637.t1;Parent=MS.gene68637.t1
chr2.1	exon	8679379	8679719	8679379	ID=MS.gene68637.t1.exon4;Parent=MS.gene68637.t1
chr2.1	CDS	8679379	8679719	8679379	ID=cds.MS.gene68637.t1;Parent=MS.gene68637.t1
chr2.1	exon	8680533	8680737	8680533	ID=MS.gene68637.t1.exon5;Parent=MS.gene68637.t1
chr2.1	CDS	8680533	8680737	8680533	ID=cds.MS.gene68637.t1;Parent=MS.gene68637.t1
chr2.1	exon	8680782	8680978	8680782	ID=MS.gene68637.t1.exon6;Parent=MS.gene68637.t1
chr2.1	CDS	8680782	8680978	8680782	ID=cds.MS.gene68637.t1;Parent=MS.gene68637.t1
chr2.1	exon	8681011	8681330	8681011	ID=MS.gene68637.t1.exon7;Parent=MS.gene68637.t1
chr2.1	CDS	8681011	8681330	8681011	ID=cds.MS.gene68637.t1;Parent=MS.gene68637.t1
chr2.1	exon	8681360	8681419	8681360	ID=MS.gene68637.t1.exon8;Parent=MS.gene68637.t1
chr2.1	CDS	8681360	8681419	8681360	ID=cds.MS.gene68637.t1;Parent=MS.gene68637.t1
chr2.1	exon	8681529	8681594	8681529	ID=MS.gene68637.t1.exon9;Parent=MS.gene68637.t1
chr2.1	CDS	8681529	8681594	8681529	ID=cds.MS.gene68637.t1;Parent=MS.gene68637.t1
chr2.1	exon	8681686	8681767	8681686	ID=MS.gene68637.t1.exon10;Parent=MS.gene68637.t1
chr2.1	CDS	8681686	8681767	8681686	ID=cds.MS.gene68637.t1;Parent=MS.gene68637.t1

Gene Sequence

>MS.gene68637

ATGAAAGAAGCTGAGAAAAGCTTAGATCCACAACTATGGCACGCATGTGCTGGAGGAATGGTTCAAATGCCATCAGTGAACACAAAAGTGTTTTACTTTCCACAAGGGCATGCAGAACATGCACAATCCAACGTTGATTTTGGAGATTCTTTAGAATTCCACCACTCATCCTCTGTAGAGTGGCTTCTGTGAAATTCTTAGCTGACCCTGAAACTGATGAAGTATTTTCAAAGATAACTTTGATTCCCTTAAGAAATTCAGAGATTGAAAATGATGATTCTGATGGTGATGGTTCAGAGAATTCAGAAAAGCCTGCATCTTTTGCAAAGACTTTGACACAATCTGATGCAAACAATGGTGGAGGGTTCTCTGTTCCTAGATACTGTGCTGAAACGATTTTCCTCGGCTTGATTACTCGGCTGAGCCACCGGTTCAGACGGTGATTGCGAAGGATGTTCACGGCGAGGTTTGGAAGTTTAGGCATATCTATAGAGGAACACCAAGGAGGCATTTGTTAACAACTGGTTGGAGTAGTTTTGTGAATCAGAAAAAGCTTGTTGCAGGTGATTCTATTGTGTTTCTGAGAGGTGAAAGTGGAGAACTTTTTGTTGGTATTCGTCGCGCGAAGAGAGGGATTGTTAATGGATTGGAAACACCTTCTGGATGGAGTTCTGGTAATGGAAATTGTGTCTTGGAGCTTATGGTGGTGCTTTTTCTGCTTTTTTGAGAGAGGAGAATAAGTTGGGGGGTGGAAGAGTGAAAGTGAGTGGTGAATCAGTGAAGGAAGCTATGAGACTTGCTGCTAGTAATCAAACATTTGAGGTTGTTTATTATCCTAGAGCAAGTACTCCTGAGTTTTGTATTAAGACTTCAGCTGTGAAAGCTGCTATGAAAATTCAATGGTGTTCTGGGATGAGGTTTAAGATGCCATTCGAAACCGAAGATTCTTCTAGGATTAGTTGGTTCATGGGAACTATTTCTTCTGTTCAGGTTGTTGATCCTATTCGTTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTACAACTACTACTGCTACTACTCTCTCGTCCTATGTTTGGAATTTGTTTTGGAGAACATGTTTGTGGTAATCCGATTCATTAACAATTTATTAATAAGTTTCATTTGAATTTTGATGATATTTTCAAGCTGTTTTGTTAAGGTTCATTTCTTTGAATTGAAAGACTCTTTTTTAGAGTTTGGTTATGTTAATATGTGTATAATATGTATAATGTATAACCAATGGTTTTGCTCAAATGCTTAACCAGTTTCTAGTAAATATTGAATTGATCGAGAGTACCTAAGTTCGAACACTAACTGAAATAATATTTGGTAGTTACCTACCGGTCAAGCTCTTGATAGCCAAGGCTTAATTCATGAATATGTAAAATACTCTTGTTTATGGTTGTACTTATCGCTTGTTTCTTATTTCAAACAAGCGAATGGTTAAAACAAAACAAAAAAATTATGTAAAATAAAATTCCTTTTTTTTTTTTTTGAGGGAGTAAAATAAAATTCTTGGAGCTCTTAATCCATGAATATATTTATGGTTGTACTTATAGCTTGTTTCTATGTAAAAATACTCTTGTTCTAGAGTTTGAAATGCCTAATGTTTGTTGTTTACTCGGGTTTGTATATAAGCAAACATGGATAAGTATTTGGTCTAATATAGACGAAATGTATTTATTTTATCGTTTATATTTAAGACTAGATGGAATTTCATTCGATGATTTGATTGTATGCAAACCTTAGTTGAGCTCAATTTGATCATAAAAAAATGCTTGTCATGCAAAAACAACCTTGATTGAACTTATGGCAATAACCTAATTGCAGGTCACTTGGGACGAACCAGATTTACTACACAATGTGAAGCGAGTATGTCCATGGTTGGTTGAATTGGTATCAAACATGTCGATGATTCATCTCGCACCCTTCTCACCACCAAGGAAGAAACTCCGTTTTCCACAACATCCGGATTTCCCTCTCGATGTTGTCCAGTTTCAGATACCAACATTTCAGGCAACCCTTTTAACCCTTTGTGTTGTATATCTTCTTCGGATAATTATAACGCTCCTGCCGCAGGCATTCAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCGGATCTTCACCTTAACAACAACAAATTTCAGTTAGGTGTGTTTCCAAATAATCGAGAGACGATTTCTAATGGTAGCAACATAACTACGAACCATGATAATAAGAGCAAAGAAAGTATATCATGTCTGTTGACTATAGGAAATTCTCACAAGAGAGTTTGGAGATCAAATCTGATAATAATGATAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATTCTCACTGAGCAACAAATCTCTAGAAAATCTTCTAGTGATGATGTGTTGTTGTCCAAGAAAAAGGACAAAGAGAAGTGGTTTTTCAGTGATACTACTAAATCTTCTATTTCTGAACAGTTTTCACCAGCAAAATCCTCTACCACTAGTGCTAGTGCTGACTTTTGTTGGCAACTTGGATTAGATACTGGTCATTGTAAGGTTTTCTTGGAGTCAGAGGATGTTGGAAGAACCTTAGATTTGTCATGTGTTGGTTCTTATGAAGAACTTTATAGAAAACTGGCTAAGATGTTGGAATAGAAAGATCTGAGATGTTGAGTCGTGTACTCTATCGTGATGCAACAGGTGCTGTTAAACAAACTGGTGAAGAACCCTTCAGGTATTTTTCTTGTTTCATCTTTTTATCCATATGAATATGAATATTTTCGAGTTTAATTTATATGCATCGTCTACGTAAACTTTTACATTGTCGGTTAATTACATTGCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGATGGATTCAGGCAGCAAAGATACTAGAAGGTATGATAAAAAAAAAACATTGTTATATTAATTACAGTGTCTTTAGATGTGTATGAAGGTACTAAACATTTTTTTGTGGAATTATTTGCAGGGTTTGTATCACAGGAACTAGGAATGCTGAACGTGGATTAGATGCATCAAATAAGACAGGACCTATGAGCATCTTTGTTTAA

Protein sequence

>MS.gene68637.t1

MKEAEKSLDPQLWHACAGGMVQMPSVNTKVFYFPQGHAEHAQSNITLIPLRNSEIENDDSDGDGSENSEKPASFAKTLTQSDANNGGGFSPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRGESGELFVGIRRAKRGIVNGLETPSGWTYGGAFSAFLREENKLGGGRVKVSGESVKEAMRLAASNQTFEVVYYPRASTPEFCIKTSAVKAAMKIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVCPWLVELVSNMSMIHLAPFSPPRKKLRFPQHPDFPLDVVQFQIPTFQATLLTLCIQGARHAQIGISLSDLHLNNNKFQLGVFPNNRETISNGSNITTNHDNKSKESISCLLTIGNSHKRRHQFLLFGQPILTEQQISRKSSSDDVLLSKKKDKEKWFFSDTTKSSISEQFSPAKSSTTSASADFCWQLGLDTGHCKVFLESEDVGRTLDLSCVGSYEELYRKLAKIRVLYRDATGAVKQTGEEPFSDFMKTAKRLTILMDSGSKDTRRVCITGTRNAERGLDASNKTGPMSIFV