AlfalfaGEDB | MS.gene68852

M. sativa cultivar XinJiangDaYe / MS.gene68852

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68852.t1	XP_003610465.2	97.9	233	5	0	1	233	102	334	6.70E-137	496.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68852.t1	A0A0C3X8T8	97.9	233	5	0	1	233	102	334	4.8e-137	496.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049418	MS.gene68852	0.824569	7.52E-54	-1.69E-46
MS.gene050310	MS.gene68852	0.801353	9.37E-49	-1.69E-46
MS.gene051018	MS.gene68852	0.830487	2.86E-55	-1.69E-46
MS.gene051478	MS.gene68852	0.807212	5.65E-50	-1.69E-46
MS.gene051720	MS.gene68852	0.811613	6.41E-51	-1.69E-46
MS.gene053144	MS.gene68852	0.827034	1.95E-54	-1.69E-46
MS.gene053538	MS.gene68852	0.801471	8.87E-49	-1.69E-46
MS.gene054584	MS.gene68852	0.829477	5.04E-55	-1.69E-46
MS.gene055466	MS.gene68852	0.800305	1.53E-48	-1.69E-46
MS.gene055537	MS.gene68852	0.821035	5.00E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68852.t1	MTR_4g132450	97.854	233	5	0	1	233	102	334	7.54e-175	484
MS.gene68852.t1	MTR_2g023970	78.112	233	50	1	1	233	89	320	7.71e-133	377

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68852.t1	AT1G11915	64.831	236	78	5	1	233	96	329	4.30e-95	281

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Find 39 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGGTGGTGGAACTTG+TGG	0.581771	8.4:-1576462	MS.gene68852:CDS
AATTTCACTACTCATTGTAA+TGG	0.476094	8.4:-1576393	MS.gene68852:intron
ACAAGTTCCACCACCACCTT+TGG	0.367403	8.4:+1576464	None:intergenic
AGGAATGTCCATGTAATTGC+AGG	0.403998	8.4:-1576035	MS.gene68852:intron
AGTGTTTATTGGAGAAATGT+TGG	0.491654	8.4:-1576582	MS.gene68852:CDS
ATGATAATGCAAGGCACAGT+AGG	0.505376	8.4:-1576055	MS.gene68852:CDS
ATGATCAAGTTCCTCAATAT+GGG	0.412810	8.4:-1576545	MS.gene68852:CDS
CAAGATGAATCACAGTGTTC+AGG	0.400798	8.4:+1576738	None:intergenic
CAAGTTATGCTAGTGTTTAT+TGG	0.239276	8.4:-1576593	MS.gene68852:CDS
CAATGTCAGGATCAATCCAA+AGG	0.643953	8.4:-1576480	MS.gene68852:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGTTTATTGGAGAAATGT+TGG	-	chr8.4:1576101-1576120	MS.gene68852:intron	30.0%
ATGATCAAGTTCCTCAATAT+GGG	-	chr8.4:1576138-1576157	MS.gene68852:intron	30.0%
CAAGTTATGCTAGTGTTTAT+TGG	-	chr8.4:1576090-1576109	MS.gene68852:intron	30.0%
GAAAATTAGGCTTATGTTTG+TGG	-	chr8.4:1576736-1576755	MS.gene68852:CDS	30.0%
GAGTTTCTTGTGTTTATGTA+AGG	-	chr8.4:1576262-1576281	MS.gene68852:intron	30.0%
TATGATCAAGTTCCTCAATA+TGG	-	chr8.4:1576137-1576156	MS.gene68852:intron	30.0%
TATTGAGGAACTTGATCATA+AGG	+	chr8.4:1576137-1576156	None:intergenic	30.0%
TTATCTTGTGATTGTGACTT+AGG	-	chr8.4:1576340-1576359	MS.gene68852:intron	30.0%
TTCTTGTGTTTATGTAAGGA+AGG	-	chr8.4:1576266-1576285	MS.gene68852:intron	30.0%
ACTTGGATGATTACCTTTAG+TGG	-	chr8.4:1576417-1576436	MS.gene68852:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	1575783	1576922	1575783	ID=MS.gene68852
chr8.4	mRNA	1575783	1576922	1575783	ID=MS.gene68852.t1;Parent=MS.gene68852
chr8.4	exon	1576394	1576922	1576394	ID=MS.gene68852.t1.exon1;Parent=MS.gene68852.t1
chr8.4	CDS	1576394	1576922	1576394	ID=cds.MS.gene68852.t1;Parent=MS.gene68852.t1
chr8.4	exon	1576036	1576080	1576036	ID=MS.gene68852.t1.exon2;Parent=MS.gene68852.t1
chr8.4	CDS	1576036	1576080	1576036	ID=cds.MS.gene68852.t1;Parent=MS.gene68852.t1
chr8.4	exon	1575783	1575910	1575783	ID=MS.gene68852.t1.exon3;Parent=MS.gene68852.t1
chr8.4	CDS	1575783	1575910	1575783	ID=cds.MS.gene68852.t1;Parent=MS.gene68852.t1

Gene Sequence

>MS.gene68852

ATGTGGAACTGTGAAGACGGTGTCAATTATCGACCAACAAGACCATTTAGTTTAGACACAAGCACACGTTTCAAGCTTTCATCTCAAAATCAGTATCTTTTTTTCAATTGTAGTGAAGAAAAAGTTATTGTTAAACCAAAGCCTGTGTTTTGTGAACAATTTCCTGAACACTGTGATTCATCTTGTGATAGTGCTAGTTATCTTTGTAGACATTTGCCAGAGTGTTCTTTTGCTATGAGTGGTAGTTCTTGTTGTTCTTATAAACCTAAAGCTACTGAATCTTTGAGGTTGATGCTTGAGTATTGTACAAGTTATGCTAGTGTTTATTGGAGAAATGTTGGAGCACCTCAGCCTTATGATCAAGTTCCTCAATATGGGATTAGAGTTGATTTTGATATTCCAGTGACGACGCGGTGTCTTCAATGTCAGGATCAATCCAAAGGTGGTGGTGGAACTTGTGGATTTGATACACAGACTCAGAGTTTCTTGTGTTTATGTAAGGAAGGAAATTTCACTACTCATTGTAATGGTATGTCAAACAAACACATTATCCTATTTTATCTTGTGATTGTGACTTAGGAAACAAAACAATTTTTACTTTTTTAATCATGTTATTGGTGCAAAGTATCTATCGACTTGGATGATTACCTTTAGTGGGGTTTTGGAACTTCGTTTTTTTTCTCCATCGACAAAGTTCGAACCTCAGATCTTGCTTAAGGGATCTAAGTCCAGTTTCACTCGTACTAACATAGTATTGGTAGGAAGACGATAATTAAACTATTGAGTAACAATTTTTGGATGATTTTGAATTAATTTAATTGGATTTATTATTTGTTTGGCAGATCATGATAATGCAAGGCACAGTAGGAATGTCCATGTAATTGCAGGTGATTGAAATGAACTTAATTAGCAATTAATTAATTAACATTCACAAAGTCAGGGTTTTTGAAGTTGAAAATTAGGCTTATGTTTGTGGTTTTGCTTTGTGTTGGATTTGGAATTCTGGCTGCAGGGACAGTTACTGCTATTTCAGCTTTTGGAGCACTTGGAATTGGAGGTGGTATTTGGTACTTAAAGAAAATGAAAGCTAAAGAACCAGTAACATGTGGAGTTCAAAGCAATGAGAACAGGCTTTTCTAA

Protein sequence

>MS.gene68852.t1

MWNCEDGVNYRPTRPFSLDTSTRFKLSSQNQYLFFNCSEEKVIVKPKPVFCEQFPEHCDSSCDSASYLCRHLPECSFAMSGSSCCSYKPKATESLRLMLEYCTSYASVYWRNVGAPQPYDQVPQYGIRVDFDIPVTTRCLQCQDQSKGGGGTCGFDTQTQSFLCLCKEGNFTTHCNDHDNARHSRNVHVIAGTVTAISAFGALGIGGGIWYLKKMKAKEPVTCGVQSNENRLF