Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69313.t1 | XP_013457964.1 | 95.8 | 518 | 13 | 4 | 1 | 511 | 1 | 516 | 8.70E-254 | 885.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69313.t1 | Q9M202 | 38.0 | 187 | 72 | 6 | 312 | 489 | 133 | 284 | 7.5e-20 | 100.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69313.t1 | A0A072V1J8 | 95.8 | 518 | 13 | 4 | 1 | 511 | 1 | 516 | 6.3e-254 | 885.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69313.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene69313 | 0.812125 | 4.96E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene69313 | 0.815895 | 7.31E-52 | -1.69E-46 |
| MS.gene049807 | MS.gene69313 | 0.830924 | 2.23E-55 | -1.69E-46 |
| MS.gene051279 | MS.gene69313 | 0.802787 | 4.75E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene69313 | 0.812327 | 4.48E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene69313 | 0.805163 | 1.52E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene69313 | 0.800944 | 1.14E-48 | -1.69E-46 |
| MS.gene052516 | MS.gene69313 | 0.822026 | 2.95E-53 | -1.69E-46 |
| MS.gene053079 | MS.gene69313 | 0.810826 | 9.50E-51 | -1.69E-46 |
| MS.gene053122 | MS.gene69313 | 0.80258 | 5.24E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene69313 | 0.805769 | 1.14E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene69313 | 0.806604 | 7.59E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene69313 | 0.810408 | 1.17E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene69313 | 0.802757 | 4.82E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene69313 | -0.811236 | 7.74E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene69313 | -0.807242 | 5.56E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene69313 | 0.806686 | 7.29E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene69313 | 0.807973 | 3.89E-50 | -1.69E-46 |
| MS.gene058492 | MS.gene69313 | 0.8297 | 4.45E-55 | -1.69E-46 |
| MS.gene059778 | MS.gene69313 | 0.820007 | 8.61E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene69313 | 0.811989 | 5.31E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69313.t1 | MTR_4g109340 | 95.753 | 518 | 13 | 4 | 1 | 511 | 1 | 516 | 0.0 | 1005 |
| MS.gene69313.t1 | MTR_3g023760 | 38.322 | 441 | 188 | 17 | 1 | 395 | 1 | 403 | 1.25e-60 | 207 |
| MS.gene69313.t1 | MTR_3g023760 | 33.133 | 166 | 71 | 4 | 378 | 511 | 307 | 464 | 1.36e-16 | 82.8 |
| MS.gene69313.t1 | MTR_0160s0030 | 37.278 | 169 | 63 | 4 | 329 | 492 | 218 | 348 | 6.58e-25 | 106 |
| MS.gene69313.t1 | MTR_4g028610 | 38.889 | 162 | 74 | 5 | 343 | 483 | 224 | 381 | 1.02e-24 | 107 |
| MS.gene69313.t1 | MTR_4g028610 | 30.928 | 194 | 106 | 6 | 4 | 195 | 6 | 173 | 1.49e-14 | 76.3 |
| MS.gene69313.t1 | MTR_4g027440 | 39.355 | 155 | 53 | 6 | 343 | 482 | 217 | 345 | 8.64e-22 | 97.4 |
| MS.gene69313.t1 | MTR_5g099040 | 46.903 | 113 | 47 | 5 | 345 | 452 | 129 | 233 | 3.09e-19 | 88.2 |
| MS.gene69313.t1 | MTR_5g062300 | 45.045 | 111 | 36 | 5 | 345 | 452 | 118 | 206 | 8.20e-18 | 83.6 |
| MS.gene69313.t1 | MTR_4g082980 | 30.705 | 241 | 139 | 6 | 10 | 233 | 7 | 236 | 1.93e-17 | 85.1 |
| MS.gene69313.t1 | MTR_4g082980 | 50.000 | 58 | 27 | 1 | 430 | 485 | 393 | 450 | 1.77e-12 | 69.7 |
| MS.gene69313.t1 | MTR_1g090703 | 35.897 | 156 | 77 | 7 | 346 | 485 | 156 | 304 | 2.28e-15 | 78.2 |
| MS.gene69313.t1 | MTR_4g057230 | 38.462 | 156 | 77 | 4 | 346 | 485 | 113 | 265 | 9.65e-15 | 75.5 |
| MS.gene69313.t1 | MTR_1g018420 | 40.000 | 145 | 52 | 7 | 346 | 484 | 81 | 196 | 1.25e-14 | 73.9 |
| MS.gene69313.t1 | MTR_2g084315 | 28.879 | 232 | 123 | 8 | 292 | 489 | 58 | 281 | 3.13e-14 | 73.9 |
| MS.gene69313.t1 | MTR_1g062780 | 32.474 | 194 | 99 | 7 | 328 | 496 | 94 | 280 | 8.71e-13 | 69.3 |
| MS.gene69313.t1 | MTR_3g102980 | 34.722 | 144 | 56 | 5 | 347 | 481 | 87 | 201 | 2.33e-12 | 67.4 |
| MS.gene69313.t1 | MTR_4g100860 | 27.686 | 242 | 136 | 8 | 281 | 488 | 72 | 308 | 3.08e-12 | 68.2 |
| MS.gene69313.t1 | MTR_1g106730 | 41.509 | 106 | 26 | 4 | 347 | 452 | 84 | 153 | 3.29e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69313.t1 | AT2G45120 | 45.665 | 173 | 51 | 8 | 323 | 489 | 173 | 308 | 2.64e-30 | 120 |
| MS.gene69313.t1 | AT3G60580 | 42.484 | 153 | 50 | 6 | 337 | 486 | 164 | 281 | 9.98e-25 | 104 |
| MS.gene69313.t1 | AT4G35280 | 39.865 | 148 | 49 | 4 | 345 | 489 | 161 | 271 | 1.53e-21 | 95.1 |
| MS.gene69313.t1 | AT1G02030 | 43.151 | 146 | 42 | 4 | 342 | 486 | 155 | 260 | 1.60e-21 | 94.7 |
| MS.gene69313.t1 | AT1G26590 | 28.321 | 399 | 193 | 14 | 1 | 368 | 1 | 337 | 1.80e-18 | 87.4 |
| MS.gene69313.t1 | AT1G26590 | 28.321 | 399 | 193 | 14 | 1 | 368 | 1 | 337 | 1.80e-18 | 87.4 |
| MS.gene69313.t1 | AT1G26590 | 28.321 | 399 | 193 | 14 | 1 | 368 | 1 | 337 | 1.80e-18 | 87.4 |
| MS.gene69313.t1 | AT1G26590 | 28.070 | 399 | 194 | 14 | 1 | 368 | 19 | 355 | 2.64e-18 | 87.4 |
| MS.gene69313.t1 | AT2G17180 | 39.583 | 144 | 54 | 6 | 345 | 487 | 147 | 258 | 5.95e-18 | 84.3 |
| MS.gene69313.t1 | AT1G02040 | 38.514 | 148 | 76 | 4 | 346 | 487 | 150 | 288 | 7.37e-17 | 82.0 |
| MS.gene69313.t1 | AT2G28200 | 38.994 | 159 | 61 | 6 | 346 | 481 | 115 | 260 | 1.61e-15 | 77.4 |
| MS.gene69313.t1 | AT1G26610 | 55.385 | 65 | 27 | 2 | 422 | 485 | 392 | 455 | 6.62e-15 | 77.4 |
| MS.gene69313.t1 | AT5G03510 | 36.420 | 162 | 67 | 7 | 344 | 485 | 116 | 261 | 1.45e-14 | 74.7 |
| MS.gene69313.t1 | AT5G04390 | 43.119 | 109 | 50 | 5 | 346 | 452 | 153 | 251 | 9.85e-14 | 73.2 |
| MS.gene69313.t1 | AT3G19580 | 36.478 | 159 | 59 | 5 | 341 | 484 | 101 | 232 | 3.19e-13 | 70.5 |
| MS.gene69313.t1 | AT3G19580 | 36.478 | 159 | 59 | 5 | 341 | 484 | 101 | 232 | 3.19e-13 | 70.5 |
| MS.gene69313.t1 | AT5G67450 | 37.107 | 159 | 59 | 6 | 346 | 481 | 97 | 237 | 3.38e-13 | 70.1 |
| MS.gene69313.t1 | AT3G49930 | 34.559 | 136 | 53 | 4 | 346 | 481 | 94 | 193 | 2.47e-12 | 66.6 |
| MS.gene69313.t1 | AT5G56200 | 37.584 | 149 | 69 | 6 | 327 | 469 | 317 | 447 | 2.60e-12 | 69.3 |
| MS.gene69313.t1 | AT3G10470 | 37.383 | 107 | 62 | 2 | 346 | 452 | 182 | 283 | 1.98e-11 | 66.2 |
Find 64 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCTCCATGTCTTCTT+TGG | 0.075353 | 8.2:-16510842 | None:intergenic |
| AGGGAAAAGTTTAGAGATTT+TGG | 0.115530 | 8.2:+16511384 | MS.gene69313:CDS |
| CCCTTTGAACTTCAAATTCT+TGG | 0.126081 | 8.2:-16511365 | None:intergenic |
| CATTGAATATGTTCAAAATA+TGG | 0.176266 | 8.2:+16511843 | MS.gene69313:CDS |
| TGAGTGTCCAATTTGCTTTA+AGG | 0.196640 | 8.2:+16511909 | MS.gene69313:CDS |
| ATGCCCTTTAATCTTCTTCT+TGG | 0.204703 | 8.2:-16511884 | None:intergenic |
| TTTCCTTGTGGTAGATCTTT+AGG | 0.228997 | 8.2:+16510677 | MS.gene69313:CDS |
| CTACAAGTGCCTCTTGATTA+TGG | 0.245683 | 8.2:-16512128 | None:intergenic |
| ATGAGCTTGCTTTCAGTTGT+TGG | 0.246397 | 8.2:-16511805 | None:intergenic |
| CACTCTTGGCAAGCTTTGTT+TGG | 0.254693 | 8.2:+16510932 | MS.gene69313:CDS |
| TCTTTCTCCATGTCTTCTTT+GGG | 0.291035 | 8.2:-16510841 | None:intergenic |
| AAGATTCAGAAGTTGAAAAT+AGG | 0.295282 | 8.2:+16511503 | MS.gene69313:CDS |
| AGAAAGAGTTTCTAACAGTT+TGG | 0.300359 | 8.2:+16510979 | MS.gene69313:CDS |
| GATTCCAAGAAGAAGATTAA+AGG | 0.330354 | 8.2:+16511880 | MS.gene69313:CDS |
| GAGAACAAGAAGTGCGAGTT+AGG | 0.355844 | 8.2:+16511331 | MS.gene69313:CDS |
| ATGAAATCACTGCTCCAAAT+AGG | 0.362876 | 8.2:+16511050 | MS.gene69313:CDS |
| GGAACAAGTTCCACAGATTA+GGG | 0.363512 | 8.2:+16512014 | MS.gene69313:CDS |
| TTTCAATCTGGTCAAGCCTT+AGG | 0.371292 | 8.2:+16511934 | MS.gene69313:CDS |
| TTTCATTCTTATCAAGCTCT+TGG | 0.373280 | 8.2:+16511682 | MS.gene69313:CDS |
| AGGAACAAGTTCCACAGATT+AGG | 0.383607 | 8.2:+16512013 | MS.gene69313:CDS |
| TATCAAAGTCAGCTACTATA+AGG | 0.397815 | 8.2:+16511557 | MS.gene69313:CDS |
| ATTCCAAGAAGAAGATTAAA+GGG | 0.409460 | 8.2:+16511881 | MS.gene69313:CDS |
| GGATTCAAGATGATCAAAAC+TGG | 0.409796 | 8.2:+16511418 | MS.gene69313:CDS |
| ATTGAATATGTTCAAAATAT+GGG | 0.416959 | 8.2:+16511844 | MS.gene69313:CDS |
| CCAAGAATTTGAAGTTCAAA+GGG | 0.426487 | 8.2:+16511365 | MS.gene69313:CDS |
| GTTTGGAGGATCAAGATTCA+TGG | 0.428070 | 8.2:+16510996 | MS.gene69313:CDS |
| TCCAAGAATTTGAAGTTCAA+AGG | 0.432409 | 8.2:+16511364 | MS.gene69313:CDS |
| CATAATCAAGAGGCACTTGT+AGG | 0.439216 | 8.2:+16512129 | MS.gene69313:CDS |
| AAACTGGAGTTTGCATCAAA+GGG | 0.452059 | 8.2:+16511434 | MS.gene69313:CDS |
| AGCTTCTTCTTCTGTTTCTG+AGG | 0.456439 | 8.2:+16511126 | MS.gene69313:CDS |
| AAAACTGGAGTTTGCATCAA+AGG | 0.462834 | 8.2:+16511433 | MS.gene69313:CDS |
| GGTTCTGAAGCTGCAACTAA+TGG | 0.470954 | 8.2:+16510797 | MS.gene69313:CDS |
| CTTTCTTCCTCAGTAGCAGC+AGG | 0.478387 | 8.2:-16512057 | None:intergenic |
| TGGACATAAAAGATCTCATA+TGG | 0.479948 | 8.2:+16511957 | MS.gene69313:CDS |
| AATAGGAAAAGCAGAGTCAA+TGG | 0.482090 | 8.2:+16511520 | MS.gene69313:CDS |
| CATTCTTATCAAGCTCTTGG+AGG | 0.487098 | 8.2:+16511685 | MS.gene69313:CDS |
| AAGAGTTTCTAACAGTTTGG+AGG | 0.513244 | 8.2:+16510982 | MS.gene69313:CDS |
| AGATCTCATATGGTTGCTGC+TGG | 0.517678 | 8.2:+16511967 | MS.gene69313:CDS |
| AGACCTTGGTGGATAGTTGA+AGG | 0.528869 | 8.2:+16512102 | MS.gene69313:CDS |
| TAATCTTCCTGCTGCTACTG+AGG | 0.529053 | 8.2:+16512050 | MS.gene69313:CDS |
| GCTTGATTATCTGTCTACAT+TGG | 0.549776 | 8.2:+16511480 | MS.gene69313:CDS |
| TTAGTAGAGATGTTAGTCCT+TGG | 0.555862 | 8.2:+16511191 | MS.gene69313:CDS |
| GACAAATTCTGCAAAGAGTG+TGG | 0.556631 | 8.2:+16510899 | MS.gene69313:CDS |
| CTGATTCTAACAGACCTTGG+TGG | 0.557324 | 8.2:+16512091 | MS.gene69313:CDS |
| CAATCTGGTCAAGCCTTAGG+TGG | 0.558498 | 8.2:+16511937 | MS.gene69313:CDS |
| GCTGCAACTAATGGTAGCTA+TGG | 0.563432 | 8.2:+16510806 | MS.gene69313:CDS |
| GAGAGAACCCAAAGAAGACA+TGG | 0.571762 | 8.2:+16510834 | MS.gene69313:CDS |
| CCTTGTGGTAGATCTTTAGG+AGG | 0.573424 | 8.2:+16510680 | MS.gene69313:CDS |
| GTAAACAGAATTATTATCAG+AGG | 0.576383 | 8.2:-16511242 | None:intergenic |
| CAAGAGGCACTTGTAGGGTA+CGG | 0.590543 | 8.2:+16512135 | MS.gene69313:CDS |
| ATGCTGATTCTAACAGACCT+TGG | 0.596589 | 8.2:+16512088 | MS.gene69313:CDS |
| TCAAGAAAGTCCCTAATCTG+TGG | 0.600941 | 8.2:-16512024 | None:intergenic |
| ATAATCAAGAGGCACTTGTA+GGG | 0.602596 | 8.2:+16512130 | MS.gene69313:CDS |
| TGAGAGTAGAGTTGTACTTG+AGG | 0.630352 | 8.2:+16511993 | MS.gene69313:CDS |
| AGATAATGAAGACCACTCCA+AGG | 0.644754 | 8.2:-16511208 | None:intergenic |
| TCATGATCATGATCATGATG+AGG | 0.648539 | 8.2:-16511595 | None:intergenic |
| GATCTTTAGGAGGTCACATG+AGG | 0.656622 | 8.2:+16510690 | MS.gene69313:CDS |
| TGAAGGCAACCATAATCAAG+AGG | 0.657701 | 8.2:+16512119 | MS.gene69313:CDS |
| CCTCCTAAAGATCTACCACA+AGG | 0.657873 | 8.2:-16510680 | None:intergenic |
| AACAAGAACAAGGTACAACA+TGG | 0.663025 | 8.2:+16511090 | MS.gene69313:CDS |
| AGAGATGTTAGTCCTTGGAG+TGG | 0.673173 | 8.2:+16511196 | MS.gene69313:CDS |
| GATCAAAGAGAACAAGAACA+AGG | 0.701444 | 8.2:+16511080 | MS.gene69313:CDS |
| TGTAGCAAAAGCTTTCCTTG+TGG | 0.721402 | 8.2:+16510665 | MS.gene69313:CDS |
| TTGCCTTCAACTATCCACCA+AGG | 0.733273 | 8.2:-16512105 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATATGTTCAAAATAT+GGG | + | chr8.2:16511844-16511863 | MS.gene69313:CDS | 15.0% |
| !! | CATTGAATATGTTCAAAATA+TGG | + | chr8.2:16511843-16511862 | MS.gene69313:CDS | 20.0% |
| !!! | ATCAAGAATTTTAATAAGAG+AGG | + | chr8.2:16511628-16511647 | MS.gene69313:CDS | 20.0% |
| ! | AAGATTCAGAAGTTGAAAAT+AGG | + | chr8.2:16511503-16511522 | MS.gene69313:CDS | 25.0% |
| ! | ACAAAAAAGAATGATAGCAT+TGG | + | chr8.2:16510776-16510795 | MS.gene69313:CDS | 25.0% |
| ! | ATTCCAAGAAGAAGATTAAA+GGG | + | chr8.2:16511881-16511900 | MS.gene69313:CDS | 25.0% |
| ! | CTAGTCATAAAAAGAACAAA+GGG | + | chr8.2:16511716-16511735 | MS.gene69313:CDS | 25.0% |
| ! | GTAAACAGAATTATTATCAG+AGG | - | chr8.2:16511245-16511264 | None:intergenic | 25.0% |
| ! | TGAAAAACCTTAAAGCAAAT+TGG | - | chr8.2:16511919-16511938 | None:intergenic | 25.0% |
| !! | TTTGATCTTTTCTTCCTATT+TGG | - | chr8.2:16511067-16511086 | None:intergenic | 25.0% |
| AGAAAGAGTTTCTAACAGTT+TGG | + | chr8.2:16510979-16510998 | MS.gene69313:CDS | 30.0% | |
| GATTCCAAGAAGAAGATTAA+AGG | + | chr8.2:16511880-16511899 | MS.gene69313:CDS | 30.0% | |
| GCTAGTCATAAAAAGAACAA+AGG | + | chr8.2:16511715-16511734 | MS.gene69313:CDS | 30.0% | |
| TATCAAAGTCAGCTACTATA+AGG | + | chr8.2:16511557-16511576 | MS.gene69313:CDS | 30.0% | |
| TGGACATAAAAGATCTCATA+TGG | + | chr8.2:16511957-16511976 | MS.gene69313:CDS | 30.0% | |
| TTTCATTCTTATCAAGCTCT+TGG | + | chr8.2:16511682-16511701 | MS.gene69313:CDS | 30.0% | |
| ! | AGGGAAAAGTTTAGAGATTT+TGG | + | chr8.2:16511384-16511403 | MS.gene69313:CDS | 30.0% |
| ! | ATAATCAAGCTCAGATTTTG+TGG | - | chr8.2:16511470-16511489 | None:intergenic | 30.0% |
| ! | CCAAGAATTTGAAGTTCAAA+GGG | + | chr8.2:16511365-16511384 | MS.gene69313:CDS | 30.0% |
| ! | TCCAAGAATTTGAAGTTCAA+AGG | + | chr8.2:16511364-16511383 | MS.gene69313:CDS | 30.0% |
| !!! | TGCTTTAAGGTTTTTCAATC+TGG | + | chr8.2:16511922-16511941 | MS.gene69313:CDS | 30.0% |
| AAAACTGGAGTTTGCATCAA+AGG | + | chr8.2:16511433-16511452 | MS.gene69313:CDS | 35.0% | |
| AAACTGGAGTTTGCATCAAA+GGG | + | chr8.2:16511434-16511453 | MS.gene69313:CDS | 35.0% | |
| AACAAGAACAAGGTACAACA+TGG | + | chr8.2:16511090-16511109 | MS.gene69313:CDS | 35.0% | |
| AAGAGTTTCTAACAGTTTGG+AGG | + | chr8.2:16510982-16511001 | MS.gene69313:CDS | 35.0% | |
| AATAGGAAAAGCAGAGTCAA+TGG | + | chr8.2:16511520-16511539 | MS.gene69313:CDS | 35.0% | |
| ATGAAATCACTGCTCCAAAT+AGG | + | chr8.2:16511050-16511069 | MS.gene69313:CDS | 35.0% | |
| ATGCCCTTTAATCTTCTTCT+TGG | - | chr8.2:16511887-16511906 | None:intergenic | 35.0% | |
| CCCTTTGAACTTCAAATTCT+TGG | - | chr8.2:16511368-16511387 | None:intergenic | 35.0% | |
| GATCAAAGAGAACAAGAACA+AGG | + | chr8.2:16511080-16511099 | MS.gene69313:CDS | 35.0% | |
| GCTTGATTATCTGTCTACAT+TGG | + | chr8.2:16511480-16511499 | MS.gene69313:CDS | 35.0% | |
| GGATTCAAGATGATCAAAAC+TGG | + | chr8.2:16511418-16511437 | MS.gene69313:CDS | 35.0% | |
| TCATGATCATGATCATGATG+AGG | - | chr8.2:16511598-16511617 | None:intergenic | 35.0% | |
| TCTTTCTCCATGTCTTCTTT+GGG | - | chr8.2:16510844-16510863 | None:intergenic | 35.0% | |
| TTAGTAGAGATGTTAGTCCT+TGG | + | chr8.2:16511191-16511210 | MS.gene69313:CDS | 35.0% | |
| TTTCCTTGTGGTAGATCTTT+AGG | + | chr8.2:16510677-16510696 | MS.gene69313:CDS | 35.0% | |
| ! | AGATCTTTTATGTCCACCTA+AGG | - | chr8.2:16511953-16511972 | None:intergenic | 35.0% |
| ! | GAGATTTTGGATGCTGAAAA+AGG | + | chr8.2:16511397-16511416 | MS.gene69313:CDS | 35.0% |
| ! | GTGGAAAATGTTTTCACTCT+TGG | + | chr8.2:16510918-16510937 | MS.gene69313:CDS | 35.0% |
| ! | TGAGTGTCCAATTTGCTTTA+AGG | + | chr8.2:16511909-16511928 | MS.gene69313:CDS | 35.0% |
| !! | ATAATCAAGAGGCACTTGTA+GGG | + | chr8.2:16512130-16512149 | MS.gene69313:CDS | 35.0% |
| AGATAATGAAGACCACTCCA+AGG | - | chr8.2:16511211-16511230 | None:intergenic | 40.0% | |
| AGGAACAAGTTCCACAGATT+AGG | + | chr8.2:16512013-16512032 | MS.gene69313:CDS | 40.0% | |
| CATTCTTATCAAGCTCTTGG+AGG | + | chr8.2:16511685-16511704 | MS.gene69313:CDS | 40.0% | |
| CTACAAGTGCCTCTTGATTA+TGG | - | chr8.2:16512131-16512150 | None:intergenic | 40.0% | |
| CTCTTTCTCCATGTCTTCTT+TGG | - | chr8.2:16510845-16510864 | None:intergenic | 40.0% | |
| GACAAATTCTGCAAAGAGTG+TGG | + | chr8.2:16510899-16510918 | MS.gene69313:CDS | 40.0% | |
| GGAACAAGTTCCACAGATTA+GGG | + | chr8.2:16512014-16512033 | MS.gene69313:CDS | 40.0% | |
| GTTTGGAGGATCAAGATTCA+TGG | + | chr8.2:16510996-16511015 | MS.gene69313:CDS | 40.0% | |
| TCAAGAAAGTCCCTAATCTG+TGG | - | chr8.2:16512027-16512046 | None:intergenic | 40.0% | |
| TGAAGGCAACCATAATCAAG+AGG | + | chr8.2:16512119-16512138 | MS.gene69313:CDS | 40.0% | |
| TGAGAGTAGAGTTGTACTTG+AGG | + | chr8.2:16511993-16512012 | MS.gene69313:CDS | 40.0% | |
| TGTAGCAAAAGCTTTCCTTG+TGG | + | chr8.2:16510665-16510684 | MS.gene69313:CDS | 40.0% | |
| TTTCAATCTGGTCAAGCCTT+AGG | + | chr8.2:16511934-16511953 | MS.gene69313:CDS | 40.0% | |
| ! | ATGAGCTTGCTTTCAGTTGT+TGG | - | chr8.2:16511808-16511827 | None:intergenic | 40.0% |
| !! | AGCTTCTTCTTCTGTTTCTG+AGG | + | chr8.2:16511126-16511145 | MS.gene69313:CDS | 40.0% |
| !! | ATGCTGATTCTAACAGACCT+TGG | + | chr8.2:16512088-16512107 | MS.gene69313:CDS | 40.0% |
| !! | CATAATCAAGAGGCACTTGT+AGG | + | chr8.2:16512129-16512148 | MS.gene69313:CDS | 40.0% |
| AGAGATGTTAGTCCTTGGAG+TGG | + | chr8.2:16511196-16511215 | MS.gene69313:CDS | 45.0% | |
| AGATCTCATATGGTTGCTGC+TGG | + | chr8.2:16511967-16511986 | MS.gene69313:CDS | 45.0% | |
| CCTCCTAAAGATCTACCACA+AGG | - | chr8.2:16510683-16510702 | None:intergenic | 45.0% | |
| CCTTGTGGTAGATCTTTAGG+AGG | + | chr8.2:16510680-16510699 | MS.gene69313:CDS | 45.0% | |
| CTGATTCTAACAGACCTTGG+TGG | + | chr8.2:16512091-16512110 | MS.gene69313:CDS | 45.0% | |
| GAGAGAACCCAAAGAAGACA+TGG | + | chr8.2:16510834-16510853 | MS.gene69313:CDS | 45.0% | |
| GCTGCAACTAATGGTAGCTA+TGG | + | chr8.2:16510806-16510825 | MS.gene69313:CDS | 45.0% | |
| TAATCTTCCTGCTGCTACTG+AGG | + | chr8.2:16512050-16512069 | MS.gene69313:CDS | 45.0% | |
| TTGCCTTCAACTATCCACCA+AGG | - | chr8.2:16512108-16512127 | None:intergenic | 45.0% | |
| ! | AGACCTTGGTGGATAGTTGA+AGG | + | chr8.2:16512102-16512121 | MS.gene69313:CDS | 45.0% |
| ! | GAGAACAAGAAGTGCGAGTT+AGG | + | chr8.2:16511331-16511350 | MS.gene69313:CDS | 45.0% |
| ! | GATCTTTAGGAGGTCACATG+AGG | + | chr8.2:16510690-16510709 | MS.gene69313:CDS | 45.0% |
| !! | CACTCTTGGCAAGCTTTGTT+TGG | + | chr8.2:16510932-16510951 | MS.gene69313:CDS | 45.0% |
| !! | GGTTCTGAAGCTGCAACTAA+TGG | + | chr8.2:16510797-16510816 | MS.gene69313:CDS | 45.0% |
| CAATCTGGTCAAGCCTTAGG+TGG | + | chr8.2:16511937-16511956 | MS.gene69313:CDS | 50.0% | |
| CTTTCTTCCTCAGTAGCAGC+AGG | - | chr8.2:16512060-16512079 | None:intergenic | 50.0% | |
| !! | CAAGAGGCACTTGTAGGGTA+CGG | + | chr8.2:16512135-16512154 | MS.gene69313:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 16510620 | 16512173 | 16510620 | ID=MS.gene69313 |
| chr8.2 | mRNA | 16510620 | 16512173 | 16510620 | ID=MS.gene69313.t1;Parent=MS.gene69313 |
| chr8.2 | exon | 16510620 | 16512173 | 16510620 | ID=MS.gene69313.t1.exon1;Parent=MS.gene69313.t1 |
| chr8.2 | CDS | 16510620 | 16512173 | 16510620 | ID=cds.MS.gene69313.t1;Parent=MS.gene69313.t1 |
| Gene Sequence |
| Protein sequence |
