Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70017.t1 | XP_003629034.1 | 98.1 | 211 | 4 | 0 | 1 | 211 | 72 | 282 | 2.50E-122 | 448 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70017.t1 | Q9ZV87 | 67.0 | 212 | 64 | 4 | 1 | 206 | 71 | 282 | 1.7e-79 | 297.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70017.t1 | G7L7V8 | 98.1 | 211 | 4 | 0 | 1 | 211 | 72 | 282 | 1.8e-122 | 448.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050170 | MS.gene70017 | -0.816715 | 4.79E-52 | -1.69E-46 |
MS.gene050904 | MS.gene70017 | -0.821041 | 4.98E-53 | -1.69E-46 |
MS.gene051317 | MS.gene70017 | -0.806314 | 8.73E-50 | -1.69E-46 |
MS.gene053108 | MS.gene70017 | 0.828084 | 1.09E-54 | -1.69E-46 |
MS.gene05470 | MS.gene70017 | -0.804983 | 1.66E-49 | -1.69E-46 |
MS.gene05589 | MS.gene70017 | -0.805031 | 1.62E-49 | -1.69E-46 |
MS.gene056387 | MS.gene70017 | -0.860033 | 2.74E-63 | -1.69E-46 |
MS.gene056583 | MS.gene70017 | 0.953228 | 4.35E-111 | -1.69E-46 |
MS.gene056618 | MS.gene70017 | 0.868131 | 8.20E-66 | -1.69E-46 |
MS.gene057271 | MS.gene70017 | 0.803138 | 4.02E-49 | -1.69E-46 |
MS.gene058334 | MS.gene70017 | 0.803568 | 3.28E-49 | -1.69E-46 |
MS.gene06000 | MS.gene70017 | -0.801847 | 7.42E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 58 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCGGCAATGTGGGGATTTA+AGG | 0.153117 | 8.1:-33204974 | MS.gene70017:CDS |
AAGAAGATTAACATAATTAT+TGG | 0.205505 | 8.1:-33200788 | MS.gene70017:CDS |
ATCCAAACCATCGGAAGTTT+TGG | 0.236147 | 8.1:+33200679 | None:intergenic |
TCCCCATTTCAATCGCCTTA+TGG | 0.245711 | 8.1:+33202013 | None:intergenic |
CCCCATTTCAATCGCCTTAT+GGG | 0.322930 | 8.1:+33202014 | None:intergenic |
GTGTTGCCATGGAGAAATTA+AGG | 0.335963 | 8.1:-33200610 | MS.gene70017:CDS |
CCCTTAAATCCCCACATTGC+CGG | 0.342600 | 8.1:+33204973 | None:intergenic |
TTAATCTTCTTATTGCATAA+TGG | 0.350456 | 8.1:+33200800 | None:intergenic |
CCGGCAATGTGGGGATTTAA+GGG | 0.352422 | 8.1:-33204973 | MS.gene70017:CDS |
GCCCAAAACTTCCGATGGTT+TGG | 0.352965 | 8.1:-33200681 | MS.gene70017:CDS |
GGCAATACAATCGGAGTTAT+AGG | 0.380006 | 8.1:+33201966 | None:intergenic |
GCTGGAAGGTCAAATTCAAT+TGG | 0.397107 | 8.1:+33200761 | None:intergenic |
GCTAACTTAGTATCAAATAT+AGG | 0.397560 | 8.1:+33204946 | None:intergenic |
CACCCATAAGGCGATTGAAA+TGG | 0.400448 | 8.1:-33202016 | MS.gene70017:CDS |
ATGGAGAAATTAAGGTGTTA+TGG | 0.405553 | 8.1:-33200602 | MS.gene70017:CDS |
TGAAAACCATGATGAACAAT+TGG | 0.407703 | 8.1:+33201945 | None:intergenic |
ACCCATAAGGCGATTGAAAT+GGG | 0.410412 | 8.1:-33202015 | MS.gene70017:CDS |
ATAGCCATTTCACTCATTGC+TGG | 0.413100 | 8.1:+33200743 | None:intergenic |
GGAATGAATCATTCCGAGAC+TGG | 0.443898 | 8.1:+33200717 | None:intergenic |
CTACCAAACATATATTTCTC+TGG | 0.451010 | 8.1:+33200836 | None:intergenic |
AATGATTCATTCCCTGCTAT+CGG | 0.460627 | 8.1:-33200707 | MS.gene70017:CDS |
CCTTCCAGCAATGAGTGAAA+TGG | 0.466140 | 8.1:-33200747 | MS.gene70017:CDS |
GGCGCTTAAATGATGGAGAA+TGG | 0.466287 | 8.1:-33203707 | MS.gene70017:CDS |
ATGCCAGAGAAATATATGTT+TGG | 0.471220 | 8.1:-33200839 | MS.gene70017:CDS |
TTGTTGCAGTTTGGATGATC+CGG | 0.474093 | 8.1:-33204992 | None:intergenic |
TTCTTATTGCATAATGGTAA+AGG | 0.476447 | 8.1:+33200806 | None:intergenic |
TGCATACCTATTACAAGAGG+TGG | 0.488641 | 8.1:-33203765 | MS.gene70017:CDS |
TTCAGCAGCAAGAACCCATC+TGG | 0.489190 | 8.1:+33204924 | None:intergenic |
GTATTGCCAATTGTTCATCA+TGG | 0.490395 | 8.1:-33201951 | MS.gene70017:CDS |
AGCACATGAATGAAGCGCTT+GGG | 0.493733 | 8.1:-33203728 | MS.gene70017:CDS |
TTTGGATGATCCGGCAATGT+GGG | 0.498103 | 8.1:-33204983 | MS.gene70017:CDS |
GAGCACATGAATGAAGCGCT+TGG | 0.502704 | 8.1:-33203729 | MS.gene70017:CDS |
ATGATTCATTCCCTGCTATC+GGG | 0.503118 | 8.1:-33200706 | MS.gene70017:CDS |
TGATACTAAGTTAGCCAGAT+GGG | 0.506841 | 8.1:-33204938 | MS.gene70017:CDS |
TGAACAATTGGCAATACAAT+CGG | 0.512162 | 8.1:+33201957 | None:intergenic |
GCGCTTGGGCGCTTAAATGA+TGG | 0.515254 | 8.1:-33203714 | MS.gene70017:CDS |
ATCAAGACGATGCACCCATA+AGG | 0.516940 | 8.1:-33202028 | MS.gene70017:CDS |
AGAGAAAATTCGTGTTGCCA+TGG | 0.524956 | 8.1:-33200621 | MS.gene70017:CDS |
AACTTCCGATGGTTTGGATG+AGG | 0.529543 | 8.1:-33200675 | MS.gene70017:CDS |
GCGCTTAAATGATGGAGAAT+GGG | 0.543995 | 8.1:-33203706 | MS.gene70017:intron |
TGCTGCCTCATCCAAACCAT+CGG | 0.562631 | 8.1:+33200670 | None:intergenic |
TTGATACTAAGTTAGCCAGA+TGG | 0.567590 | 8.1:-33204939 | MS.gene70017:CDS |
GCATACCTATTACAAGAGGT+GGG | 0.571063 | 8.1:-33203764 | MS.gene70017:CDS |
AAATGGCTATTGCCCAGTCT+CGG | 0.571200 | 8.1:-33200730 | MS.gene70017:CDS |
ATAACACCTTAATTTCTCCA+TGG | 0.579558 | 8.1:+33200604 | None:intergenic |
CCATTTCACTCATTGCTGGA+AGG | 0.590388 | 8.1:+33200747 | None:intergenic |
ATACCTATTACAAGAGGTGG+GGG | 0.590840 | 8.1:-33203762 | MS.gene70017:CDS |
GAATGAATCATTCCGAGACT+GGG | 0.595529 | 8.1:+33200718 | None:intergenic |
TTGGATGATCCGGCAATGTG+GGG | 0.611624 | 8.1:-33204982 | MS.gene70017:CDS |
GGGTGGCCCAAAACTTCCGA+TGG | 0.612018 | 8.1:-33200686 | MS.gene70017:CDS |
CATACCTATTACAAGAGGTG+GGG | 0.616369 | 8.1:-33203763 | MS.gene70017:CDS |
TTATTGCATAATGGTAAAGG+AGG | 0.636529 | 8.1:+33200809 | None:intergenic |
ATTCATTCCCTGCTATCGGG+TGG | 0.650574 | 8.1:-33200703 | MS.gene70017:CDS |
GTTTGGATGATCCGGCAATG+TGG | 0.650697 | 8.1:-33204984 | MS.gene70017:CDS |
CCCATAAGGCGATTGAAATG+GGG | 0.650823 | 8.1:-33202014 | MS.gene70017:CDS |
CAATCGGAGTTATAGGTGCA+CGG | 0.652808 | 8.1:+33201973 | None:intergenic |
AAATGCATACCTATTACAAG+AGG | 0.660468 | 8.1:-33203768 | MS.gene70017:CDS |
TACCTATTACAAGAGGTGGG+GGG | 0.737152 | 8.1:-33203761 | MS.gene70017:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTCAAATAAAAAAAAAAAT+AGG | + | chr8.1:33203074-33203093 | None:intergenic | 10.0% |
!! | AAAAATAATAAAGGTCTATT+TGG | - | chr8.1:33201196-33201215 | MS.gene70017:intron | 15.0% |
!! | AAATCAAATTAAAACTAATC+AGG | + | chr8.1:33200732-33200751 | None:intergenic | 15.0% |
!! | AAGAAGATTAACATAATTAT+TGG | - | chr8.1:33204775-33204794 | MS.gene70017:intron | 15.0% |
!! | AATCAAATTAAAACTAATCA+GGG | + | chr8.1:33200731-33200750 | None:intergenic | 15.0% |
!! | CAATTACTCAAAAATAATAA+AGG | - | chr8.1:33201187-33201206 | MS.gene70017:intron | 15.0% |
!!! | ATAATCATTTTAATTAGAAC+TGG | - | chr8.1:33203876-33203895 | MS.gene70017:intron | 15.0% |
!!! | ATTTCATTTTCACAAATAAT+AGG | + | chr8.1:33202745-33202764 | None:intergenic | 15.0% |
!!! | ATTTTAATAAACTTACATTC+TGG | - | chr8.1:33202775-33202794 | MS.gene70017:intron | 15.0% |
!!! | TAATCATTTTAATTAGAACT+GGG | - | chr8.1:33203877-33203896 | MS.gene70017:intron | 15.0% |
!!! | TATTATCTTAATCTTTTGAT+TGG | + | chr8.1:33204227-33204246 | None:intergenic | 15.0% |
!! | AAATTTCACCATAATAATCA+AGG | + | chr8.1:33201403-33201422 | None:intergenic | 20.0% |
!! | AATTTCACCATAATAATCAA+GGG | + | chr8.1:33201402-33201421 | None:intergenic | 20.0% |
!! | AGAAAAAAAAAAGTCTAGTA+CGG | + | chr8.1:33204392-33204411 | None:intergenic | 20.0% |
!! | AGAACAAAAGCTATAAAAAT+TGG | - | chr8.1:33203134-33203153 | MS.gene70017:intron | 20.0% |
!! | AGAACATAATACAAGAAATA+TGG | + | chr8.1:33204500-33204519 | None:intergenic | 20.0% |
!! | AGAATTCTCAAAGAAAAAAT+TGG | + | chr8.1:33202332-33202351 | None:intergenic | 20.0% |
!! | AGATTGTTTACCAAATAAAA+AGG | + | chr8.1:33202577-33202596 | None:intergenic | 20.0% |
!! | ATAATGAGAATGAATATTCA+GGG | - | chr8.1:33202228-33202247 | MS.gene70017:intron | 20.0% |
!! | ATTAAGCGATAAAAAAAATC+TGG | + | chr8.1:33202873-33202892 | None:intergenic | 20.0% |
!! | CTATTACTATTTAGTGTAAT+TGG | - | chr8.1:33201669-33201688 | MS.gene70017:intron | 20.0% |
!! | TAATAACCAATAAAACAGAA+GGG | + | chr8.1:33203044-33203063 | None:intergenic | 20.0% |
!! | TACAAAATATAGTCAAATAG+CGG | + | chr8.1:33200850-33200869 | None:intergenic | 20.0% |
!! | TATAAATTTGTCGTAACAAA+AGG | - | chr8.1:33204086-33204105 | MS.gene70017:intron | 20.0% |
!! | TATAATGAGAATGAATATTC+AGG | - | chr8.1:33202227-33202246 | MS.gene70017:intron | 20.0% |
!! | TGCATAAAAAAAACCAAAAT+TGG | - | chr8.1:33201433-33201452 | MS.gene70017:intron | 20.0% |
!! | TTAATCTTCTTATTGCATAA+TGG | + | chr8.1:33204766-33204785 | None:intergenic | 20.0% |
!!! | AAAATCATAGAAAAGTTTTC+AGG | + | chr8.1:33201727-33201746 | None:intergenic | 20.0% |
!!! | AGAACAAATTTTGAAATCAA+GGG | - | chr8.1:33201472-33201491 | MS.gene70017:intron | 20.0% |
!!! | ATTTTGCATCATGAATTTAT+AGG | + | chr8.1:33203858-33203877 | None:intergenic | 20.0% |
!!! | TAGTTTTGTTGTTTCTAAAA+TGG | - | chr8.1:33201758-33201777 | MS.gene70017:intron | 20.0% |
!!! | TATTTGACTATATTTTGTAG+TGG | - | chr8.1:33200851-33200870 | MS.gene70017:intron | 20.0% |
!!! | TTTCCTTGCTTTTTATATTT+GGG | - | chr8.1:33203237-33203256 | MS.gene70017:intron | 20.0% |
! | AAAACTAAACTTGGACTAAT+TGG | - | chr8.1:33201627-33201646 | MS.gene70017:intron | 25.0% |
! | AAGCATTAAGAAAAAGATCA+TGG | + | chr8.1:33204039-33204058 | None:intergenic | 25.0% |
! | AATGTGAAAACTAAACATAC+CGG | + | chr8.1:33200708-33200727 | None:intergenic | 25.0% |
! | ATATATCTTAAGCATACGAT+TGG | - | chr8.1:33204336-33204355 | MS.gene70017:intron | 25.0% |
! | CCAAATAATTAGAAAATGAC+AGG | + | chr8.1:33203983-33204002 | None:intergenic | 25.0% |
! | CGAAAAACATATGAATAAAG+TGG | + | chr8.1:33200683-33200702 | None:intergenic | 25.0% |
! | CTAATAACCAATAAAACAGA+AGG | + | chr8.1:33203045-33203064 | None:intergenic | 25.0% |
! | CTTATACATAAGCTCTTATA+TGG | - | chr8.1:33201066-33201085 | MS.gene70017:intron | 25.0% |
! | GCTAACTTAGTATCAAATAT+AGG | + | chr8.1:33200620-33200639 | None:intergenic | 25.0% |
! | TAATGAGAATGAATATTCAG+GGG | - | chr8.1:33202229-33202248 | MS.gene70017:intron | 25.0% |
! | TGTGATTCATATTTAGAAAC+TGG | - | chr8.1:33204447-33204466 | MS.gene70017:intron | 25.0% |
! | TTCTTATTGCATAATGGTAA+AGG | + | chr8.1:33204760-33204779 | None:intergenic | 25.0% |
!! | AATTTCTGCTTATGTTTTCT+AGG | - | chr8.1:33204699-33204718 | MS.gene70017:intron | 25.0% |
!! | ACTCTTTTACGATGATAATT+TGG | - | chr8.1:33201924-33201943 | MS.gene70017:intron | 25.0% |
!! | ATTCTCATTATAACACCTTT+TGG | + | chr8.1:33202219-33202238 | None:intergenic | 25.0% |
!! | CTCTTTTACGATGATAATTT+GGG | - | chr8.1:33201925-33201944 | MS.gene70017:intron | 25.0% |
!! | GAATTTAGTTGTTAGACTTT+TGG | - | chr8.1:33203767-33203786 | MS.gene70017:CDS | 25.0% |
!!! | ATTCTCTACTCTGAAATATT+GGG | - | chr8.1:33202957-33202976 | MS.gene70017:intron | 25.0% |
!!! | CCTGTCATTTTCTAATTATT+TGG | - | chr8.1:33203980-33203999 | MS.gene70017:intron | 25.0% |
!!! | CTTTCCTTGCTTTTTATATT+TGG | - | chr8.1:33203236-33203255 | MS.gene70017:intron | 25.0% |
!!! | GAGAACAAATTTTGAAATCA+AGG | - | chr8.1:33201471-33201490 | MS.gene70017:intron | 25.0% |
!!! | TATTCTCTACTCTGAAATAT+TGG | - | chr8.1:33202956-33202975 | MS.gene70017:intron | 25.0% |
!!! | TCTTGTTTTTGATGCATTTA+TGG | - | chr8.1:33202429-33202448 | MS.gene70017:intron | 25.0% |
!!! | TGTTGGTTTTCCTTTTTATT+TGG | - | chr8.1:33202564-33202583 | MS.gene70017:intron | 25.0% |
AAAAAAATCTGGTGAAGTTG+AGG | + | chr8.1:33202862-33202881 | None:intergenic | 30.0% | |
AAATAGCTATTGTTCTGTGT+TGG | - | chr8.1:33200883-33200902 | MS.gene70017:intron | 30.0% | |
AAATATAGACGATGCACAAA+AGG | + | chr8.1:33201574-33201593 | None:intergenic | 30.0% | |
AAATGACAGGACATATATCA+AGG | + | chr8.1:33203970-33203989 | None:intergenic | 30.0% | |
AAATGCATACCTATTACAAG+AGG | - | chr8.1:33201795-33201814 | MS.gene70017:intron | 30.0% | |
AACAAGAATCACAAGAGTAA+TGG | + | chr8.1:33204543-33204562 | None:intergenic | 30.0% | |
ACTCAACTATACATTAACAC+AGG | + | chr8.1:33201145-33201164 | None:intergenic | 30.0% | |
AGTGCTACAAATGGTATATA+AGG | + | chr8.1:33203699-33203718 | None:intergenic | 30.0% | |
ATAACACCTTAATTTCTCCA+TGG | + | chr8.1:33204962-33204981 | None:intergenic | 30.0% | |
ATGAGATACTTGCATAGTAA+CGG | + | chr8.1:33204589-33204608 | None:intergenic | 30.0% | |
ATGCCAGAGAAATATATGTT+TGG | - | chr8.1:33204724-33204743 | MS.gene70017:intron | 30.0% | |
CTACCAAACATATATTTCTC+TGG | + | chr8.1:33204730-33204749 | None:intergenic | 30.0% | |
CTACTTGTGAGAATTATTGA+AGG | - | chr8.1:33204163-33204182 | MS.gene70017:intron | 30.0% | |
CTTTCGTAAAGAGAAAATTG+TGG | - | chr8.1:33202647-33202666 | MS.gene70017:intron | 30.0% | |
TAATAAAGGTCTATTTGGTC+TGG | - | chr8.1:33201201-33201220 | MS.gene70017:intron | 30.0% | |
TATAGGATAAACAGGTTTGT+GGG | - | chr8.1:33203011-33203030 | MS.gene70017:intron | 30.0% | |
TATCCCATCCTATCTTATTA+GGG | + | chr8.1:33201311-33201330 | None:intergenic | 30.0% | |
TGAAAACCATGATGAACAAT+TGG | + | chr8.1:33203621-33203640 | None:intergenic | 30.0% | |
TGAACAATTGGCAATACAAT+CGG | + | chr8.1:33203609-33203628 | None:intergenic | 30.0% | |
TTATTGCATAATGGTAAAGG+AGG | + | chr8.1:33204757-33204776 | None:intergenic | 30.0% | |
TTCTCAACCCTTGATTATTA+TGG | - | chr8.1:33201392-33201411 | MS.gene70017:intron | 30.0% | |
TTGAAAACATGTGTGAGAAA+TGG | - | chr8.1:33201265-33201284 | MS.gene70017:intron | 30.0% | |
TTTCCCTAATAAGATAGGAT+GGG | - | chr8.1:33201305-33201324 | MS.gene70017:intron | 30.0% | |
! | AGTTTGTTCAACTTCAACTA+CGG | + | chr8.1:33200995-33201014 | None:intergenic | 30.0% |
! | ATCAGCAGTATTTTCTTACA+AGG | - | chr8.1:33203814-33203833 | MS.gene70017:intron | 30.0% |
! | ATGGAGAAATTAAGGTGTTA+TGG | - | chr8.1:33204961-33204980 | MS.gene70017:CDS | 30.0% |
! | CATAGAAGTATAGGATAAAC+AGG | - | chr8.1:33203003-33203022 | MS.gene70017:intron | 30.0% |
! | CTGAAGTACTATATAGTGAT+TGG | + | chr8.1:33201544-33201563 | None:intergenic | 30.0% |
! | TAACAAATCGTCACCAATTT+TGG | + | chr8.1:33201449-33201468 | None:intergenic | 30.0% |
! | TATTCATATGTTTTTCGCAC+CGG | - | chr8.1:33200686-33200705 | MS.gene70017:CDS | 30.0% |
! | TCTAAAATGGTAACATTCAC+AGG | - | chr8.1:33201771-33201790 | MS.gene70017:intron | 30.0% |
! | TTGATTGGTCATTGTTCAAT+GGG | + | chr8.1:33204212-33204231 | None:intergenic | 30.0% |
! | TTTGATTGGTCATTGTTCAA+TGG | + | chr8.1:33204213-33204232 | None:intergenic | 30.0% |
! | TTTTCCCTAATAAGATAGGA+TGG | - | chr8.1:33201304-33201323 | MS.gene70017:intron | 30.0% |
!! | AATCACTCATAGCTTTGATT+TGG | + | chr8.1:33202294-33202313 | None:intergenic | 30.0% |
!! | ATAAGATTGCGTTGATTTCA+TGG | - | chr8.1:33203157-33203176 | MS.gene70017:intron | 30.0% |
!! | TAAGATTGCGTTGATTTCAT+GGG | - | chr8.1:33203158-33203177 | MS.gene70017:intron | 30.0% |
!! | TAATTTCGTTATGCTGATTC+TGG | - | chr8.1:33204665-33204684 | MS.gene70017:intron | 30.0% |
!! | TCAATTAGAAGTGCTACAAA+TGG | + | chr8.1:33203708-33203727 | None:intergenic | 30.0% |
!! | TTTCAGAAACTTCTGAAACT+TGG | + | chr8.1:33203376-33203395 | None:intergenic | 30.0% |
!! | TTTTCTCGGTTGATGTTAAA+TGG | - | chr8.1:33202014-33202033 | MS.gene70017:CDS | 30.0% |
!!! | AACTTGGTATCTTTTAGTTC+TGG | + | chr8.1:33203360-33203379 | None:intergenic | 30.0% |
!!! | AGTTGTTAGACTTTTGGAAT+TGG | - | chr8.1:33203773-33203792 | MS.gene70017:CDS | 30.0% |
!!! | GTTTTATTTGCATGACCATT+GGG | - | chr8.1:33203094-33203113 | MS.gene70017:intron | 30.0% |
!!! | TCTGGCTTTTTTCTTTGTTT+TGG | - | chr8.1:33201219-33201238 | MS.gene70017:intron | 30.0% |
!!! | TGTTTTATTTGCATGACCAT+TGG | - | chr8.1:33203093-33203112 | MS.gene70017:intron | 30.0% |
!!! | TTATTGTCCTTGCTTTTTCT+CGG | - | chr8.1:33202000-33202019 | MS.gene70017:CDS | 30.0% |
!!! | TTTAGTTTTGCAAAGCGAAA+TGG | + | chr8.1:33201616-33201635 | None:intergenic | 30.0% |
!!! | TTTTTTTTTCTCTGCATGAC+CGG | - | chr8.1:33204401-33204420 | MS.gene70017:intron | 30.0% |
AAAACTCTTAGCGATACTAG+AGG | + | chr8.1:33201981-33202000 | None:intergenic | 35.0% | |
AAACTCTTAGCGATACTAGA+GGG | + | chr8.1:33201980-33201999 | None:intergenic | 35.0% | |
AAATGGAAAGTTCTCTGAAC+TGG | - | chr8.1:33203436-33203455 | MS.gene70017:intron | 35.0% | |
AATGATTCATTCCCTGCTAT+CGG | - | chr8.1:33204856-33204875 | MS.gene70017:intron | 35.0% | |
AGAATATGAGATGATCCTAG+AGG | - | chr8.1:33202074-33202093 | MS.gene70017:intron | 35.0% | |
AGTTCAGAGAACTTTCCATT+TGG | + | chr8.1:33203437-33203456 | None:intergenic | 35.0% | |
ATACTTGCATAGTAACGGTT+AGG | + | chr8.1:33204584-33204603 | None:intergenic | 35.0% | |
ATCAATTGTCAAACACCCAA+TGG | + | chr8.1:33203112-33203131 | None:intergenic | 35.0% | |
CATTAAGACAATTGCAGATC+CGG | + | chr8.1:33204423-33204442 | None:intergenic | 35.0% | |
CTAAACTTGGACTAATTGGA+AGG | - | chr8.1:33201631-33201650 | MS.gene70017:intron | 35.0% | |
CTAATAAGATAGGATGGGAT+AGG | - | chr8.1:33201310-33201329 | MS.gene70017:intron | 35.0% | |
CTATCCCATCCTATCTTATT+AGG | + | chr8.1:33201312-33201331 | None:intergenic | 35.0% | |
CTCTTTCCTCTAATACCTTT+GGG | - | chr8.1:33203661-33203680 | MS.gene70017:intron | 35.0% | |
GATTTCATGGGTAAATTCAG+AGG | - | chr8.1:33203170-33203189 | MS.gene70017:intron | 35.0% | |
GCTGCTTATCTTGAAAATGT+GGG | - | chr8.1:33202797-33202816 | MS.gene70017:intron | 35.0% | |
GTAAAAGAGTTATGCTTGTG+TGG | + | chr8.1:33201914-33201933 | None:intergenic | 35.0% | |
GTATAGGATAAACAGGTTTG+TGG | - | chr8.1:33203010-33203029 | MS.gene70017:intron | 35.0% | |
GTATTGCCAATTGTTCATCA+TGG | - | chr8.1:33203612-33203631 | MS.gene70017:intron | 35.0% | |
GTGCCCAAATATAAAAAGCA+AGG | + | chr8.1:33203243-33203262 | None:intergenic | 35.0% | |
GTTCAGAGAACTTTCCATTT+GGG | + | chr8.1:33203436-33203455 | None:intergenic | 35.0% | |
TAATGCTTGCTTTCTTCTCA+AGG | - | chr8.1:33204051-33204070 | MS.gene70017:intron | 35.0% | |
TAGTAATGAGCATGTATCGA+TGG | - | chr8.1:33203904-33203923 | MS.gene70017:intron | 35.0% | |
TCGCTTTGCAAAACTAAACT+TGG | - | chr8.1:33201618-33201637 | MS.gene70017:intron | 35.0% | |
TCTTTCCTCTAATACCTTTG+GGG | - | chr8.1:33203662-33203681 | MS.gene70017:intron | 35.0% | |
TGATACTAAGTTAGCCAGAT+GGG | - | chr8.1:33200625-33200644 | MS.gene70017:CDS | 35.0% | |
TGCAAGAGATTAGAGATCAA+AGG | - | chr8.1:33204136-33204155 | MS.gene70017:intron | 35.0% | |
TTCAGAGAACTTTCCATTTG+GGG | + | chr8.1:33203435-33203454 | None:intergenic | 35.0% | |
TTGATACTAAGTTAGCCAGA+TGG | - | chr8.1:33200624-33200643 | MS.gene70017:CDS | 35.0% | |
TTGTTATCCATGGCAGAAAA+TGG | + | chr8.1:33202381-33202400 | None:intergenic | 35.0% | |
! | AATCTTTCTTGTGTGTCACT+GGG | - | chr8.1:33202592-33202611 | MS.gene70017:intron | 35.0% |
! | CAAGCAGTTCATAGAAGTAT+AGG | - | chr8.1:33202994-33203013 | MS.gene70017:intron | 35.0% |
! | GATGCATTTATGGACTGAAT+TGG | - | chr8.1:33202439-33202458 | MS.gene70017:intron | 35.0% |
! | GTATGTCCCTTCTGTTTTAT+TGG | - | chr8.1:33203035-33203054 | MS.gene70017:intron | 35.0% |
! | TATTTGGGCACACTATTTTC+TGG | - | chr8.1:33203252-33203271 | MS.gene70017:intron | 35.0% |
! | TCTAGGATCATCTCATATTC+TGG | + | chr8.1:33202075-33202094 | None:intergenic | 35.0% |
! | TCTTGATGAACTTTTCCTTC+TGG | + | chr8.1:33203522-33203541 | None:intergenic | 35.0% |
! | TGTACTCCTCTATTACGTTT+TGG | - | chr8.1:33203280-33203299 | MS.gene70017:intron | 35.0% |
! | TGTTCATCATGGTTTTCATG+AGG | - | chr8.1:33203623-33203642 | MS.gene70017:intron | 35.0% |
! | TTGAGCTTGATTTGACTAAG+AGG | + | chr8.1:33202713-33202732 | None:intergenic | 35.0% |
!! | ACTCTGAAATATTGGGTGAT+TGG | - | chr8.1:33202964-33202983 | MS.gene70017:intron | 35.0% |
!! | CAGTTAAAGCTTGTTATCCA+TGG | + | chr8.1:33202391-33202410 | None:intergenic | 35.0% |
!! | GTCGTTTTCCCTAATAAGAT+AGG | - | chr8.1:33201300-33201319 | MS.gene70017:intron | 35.0% |
AAAGAGTTATGCTTGTGTGG+AGG | + | chr8.1:33201911-33201930 | None:intergenic | 40.0% | |
AAGAGTTATGCTTGTGTGGA+GGG | + | chr8.1:33201910-33201929 | None:intergenic | 40.0% | |
ACATCAACCGAGAAAAAGCA+AGG | + | chr8.1:33202010-33202029 | None:intergenic | 40.0% | |
ACATTGCTATAGTGCTACCA+TGG | - | chr8.1:33200821-33200840 | MS.gene70017:CDS | 40.0% | |
ACCCATAAGGCGATTGAAAT+GGG | - | chr8.1:33203548-33203567 | MS.gene70017:intron | 40.0% | |
ACTCAGTTGTGGAAAGTTGA+TGG | + | chr8.1:33203196-33203215 | None:intergenic | 40.0% | |
AGAGAAAATTCGTGTTGCCA+TGG | - | chr8.1:33204942-33204961 | MS.gene70017:CDS | 40.0% | |
ATACCTATTACAAGAGGTGG+GGG | - | chr8.1:33201801-33201820 | MS.gene70017:intron | 40.0% | |
ATAGCCATTTCACTCATTGC+TGG | + | chr8.1:33204823-33204842 | None:intergenic | 40.0% | |
ATCTCCATAGAAGTTGCACA+CGG | + | chr8.1:33203317-33203336 | None:intergenic | 40.0% | |
ATGATTCATTCCCTGCTATC+GGG | - | chr8.1:33204857-33204876 | MS.gene70017:intron | 40.0% | |
CAATCTTTCTTGTGTGTCAC+TGG | - | chr8.1:33202591-33202610 | MS.gene70017:intron | 40.0% | |
CATACCTATTACAAGAGGTG+GGG | - | chr8.1:33201800-33201819 | MS.gene70017:intron | 40.0% | |
CATTGCTATAGTGCTACCAT+GGG | - | chr8.1:33200822-33200841 | MS.gene70017:CDS | 40.0% | |
CCTCTTTCCTCTAATACCTT+TGG | - | chr8.1:33203660-33203679 | MS.gene70017:intron | 40.0% | |
CTTACTCTGTAGCATCCAAA+AGG | - | chr8.1:33202201-33202220 | MS.gene70017:intron | 40.0% | |
GAATGAATCATTCCGAGACT+GGG | + | chr8.1:33204848-33204867 | None:intergenic | 40.0% | |
GCATACCTATTACAAGAGGT+GGG | - | chr8.1:33201799-33201818 | MS.gene70017:intron | 40.0% | |
GCTGGAAGGTCAAATTCAAT+TGG | + | chr8.1:33204805-33204824 | None:intergenic | 40.0% | |
GGCAATACAATCGGAGTTAT+AGG | + | chr8.1:33203600-33203619 | None:intergenic | 40.0% | |
GGCTGCTTATCTTGAAAATG+TGG | - | chr8.1:33202796-33202815 | MS.gene70017:intron | 40.0% | |
GTAAGTAACAGACTCTCACT+AGG | + | chr8.1:33202186-33202205 | None:intergenic | 40.0% | |
GTGATGTCAATCGTAGATCA+TGG | + | chr8.1:33201026-33201045 | None:intergenic | 40.0% | |
GTGTTGCCATGGAGAAATTA+AGG | - | chr8.1:33204953-33204972 | MS.gene70017:CDS | 40.0% | |
TGAGAATGAATATTCAGGGG+AGG | - | chr8.1:33202232-33202251 | MS.gene70017:intron | 40.0% | |
TGCATACCTATTACAAGAGG+TGG | - | chr8.1:33201798-33201817 | MS.gene70017:intron | 40.0% | |
! | ATCCAAACCATCGGAAGTTT+TGG | + | chr8.1:33204887-33204906 | None:intergenic | 40.0% |
! | CTCTAACAACGAAAGCGTAT+CGG | - | chr8.1:33201366-33201385 | MS.gene70017:intron | 40.0% |
! | GCGCTTAAATGATGGAGAAT+GGG | - | chr8.1:33201857-33201876 | MS.gene70017:intron | 40.0% |
! | TCCAAACCATCGGAAGTTTT+GGG | + | chr8.1:33204886-33204905 | None:intergenic | 40.0% |
! | TGGTTGCTAGAGCTTTGATT+TGG | + | chr8.1:33202361-33202380 | None:intergenic | 40.0% |
!! | CCAAAGGTATTAGAGGAAAG+AGG | + | chr8.1:33203663-33203682 | None:intergenic | 40.0% |
!! | TCCTCTATTACGTTTTGGCA+GGG | - | chr8.1:33203285-33203304 | MS.gene70017:intron | 40.0% |
!! | TTGCATTTTAGTGCCCCAAA+TGG | - | chr8.1:33203419-33203438 | MS.gene70017:intron | 40.0% |
AAATGGCTATTGCCCAGTCT+CGG | - | chr8.1:33204833-33204852 | MS.gene70017:intron | 45.0% | |
AACATCTCCAACGGTTACAG+CGG | - | chr8.1:33200954-33200973 | MS.gene70017:intron | 45.0% | |
AAGAAGCCACTGTGGTTTAG+TGG | - | chr8.1:33202676-33202695 | MS.gene70017:intron | 45.0% | |
ACCCTGCCAAAACGTAATAG+AGG | + | chr8.1:33203289-33203308 | None:intergenic | 45.0% | |
ACTACGAGCACAGTGCTTAT+TGG | + | chr8.1:33204366-33204385 | None:intergenic | 45.0% | |
AGAAGCCACTGTGGTTTAGT+GGG | - | chr8.1:33202677-33202696 | MS.gene70017:intron | 45.0% | |
AGGATGGGATAGGAACATGT+GGG | - | chr8.1:33201320-33201339 | MS.gene70017:intron | 45.0% | |
AGTAGGCACCTATTGTCTCA+TGG | - | chr8.1:33202103-33202122 | MS.gene70017:intron | 45.0% | |
ATCAAGACGATGCACCCATA+AGG | - | chr8.1:33203535-33203554 | MS.gene70017:intron | 45.0% | |
ATCTCCGTGTGCAACTTCTA+TGG | - | chr8.1:33203310-33203329 | MS.gene70017:intron | 45.0% | |
CAATCGGAGTTATAGGTGCA+CGG | + | chr8.1:33203593-33203612 | None:intergenic | 45.0% | |
CACCCATAAGGCGATTGAAA+TGG | - | chr8.1:33203547-33203566 | MS.gene70017:intron | 45.0% | |
CCATTTCACTCATTGCTGGA+AGG | + | chr8.1:33204819-33204838 | None:intergenic | 45.0% | |
CCCATAAGGCGATTGAAATG+GGG | - | chr8.1:33203549-33203568 | MS.gene70017:intron | 45.0% | |
CCCCATTTCAATCGCCTTAT+GGG | + | chr8.1:33203552-33203571 | None:intergenic | 45.0% | |
CCTTCCAGCAATGAGTGAAA+TGG | - | chr8.1:33204816-33204835 | MS.gene70017:intron | 45.0% | |
CTCATGGGTCAACACTTGAT+AGG | - | chr8.1:33202119-33202138 | MS.gene70017:intron | 45.0% | |
GAAGAGTAGCGATGCAAAGA+AGG | - | chr8.1:33202463-33202482 | MS.gene70017:intron | 45.0% | |
GATCCTAGAGGACAGATAGT+AGG | - | chr8.1:33202086-33202105 | MS.gene70017:intron | 45.0% | |
GGAATGAATCATTCCGAGAC+TGG | + | chr8.1:33204849-33204868 | None:intergenic | 45.0% | |
GGATGTAAAAGAAGCCACTG+TGG | - | chr8.1:33202668-33202687 | MS.gene70017:intron | 45.0% | |
GTAGGCACCTATTGTCTCAT+GGG | - | chr8.1:33202104-33202123 | MS.gene70017:intron | 45.0% | |
TACCTATTACAAGAGGTGGG+GGG | - | chr8.1:33201802-33201821 | MS.gene70017:intron | 45.0% | |
TAGGATGGGATAGGAACATG+TGG | - | chr8.1:33201319-33201338 | MS.gene70017:intron | 45.0% | |
TCCCCATTTCAATCGCCTTA+TGG | + | chr8.1:33203553-33203572 | None:intergenic | 45.0% | |
TGGATATTCAGCCTTCAGTG+CGG | - | chr8.1:33200903-33200922 | MS.gene70017:intron | 45.0% | |
TGGGTCAACACTTGATAGGA+AGG | - | chr8.1:33202123-33202142 | MS.gene70017:intron | 45.0% | |
TTGATAGGAAGGTCTACACG+AGG | - | chr8.1:33202134-33202153 | MS.gene70017:intron | 45.0% | |
TTGCTAACGAGACTCAGTTG+TGG | + | chr8.1:33203207-33203226 | None:intergenic | 45.0% | |
TTTGGATGATCCGGCAATGT+GGG | - | chr8.1:33200580-33200599 | MS.gene70017:CDS | 45.0% | |
! | AACTTCCGATGGTTTGGATG+AGG | - | chr8.1:33204888-33204907 | MS.gene70017:CDS | 45.0% |
! | AGCACATGAATGAAGCGCTT+GGG | - | chr8.1:33201835-33201854 | MS.gene70017:intron | 45.0% |
! | CAGCTGCATACTTTTCCAGA+AGG | - | chr8.1:33203504-33203523 | MS.gene70017:intron | 45.0% |
! | CTAGCAACCATTTTCTGCCA+TGG | - | chr8.1:33202371-33202390 | MS.gene70017:intron | 45.0% |
! | GGAAAAGTATGCAGCTGCAA+TGG | + | chr8.1:33203501-33203520 | None:intergenic | 45.0% |
! | GGCGCTTAAATGATGGAGAA+TGG | - | chr8.1:33201856-33201875 | MS.gene70017:intron | 45.0% |
! | GTGTTGACCCATGAGACAAT+AGG | + | chr8.1:33202114-33202133 | None:intergenic | 45.0% |
! | GTTTTTGCGCTGTCGTATTG+TGG | - | chr8.1:33204625-33204644 | MS.gene70017:intron | 45.0% |
!! | CTCCTCTATTACGTTTTGGC+AGG | - | chr8.1:33203284-33203303 | MS.gene70017:intron | 45.0% |
!! | TCGAACCCCAAAGGTATTAG+AGG | + | chr8.1:33203670-33203689 | None:intergenic | 45.0% |
!! | TCTAATACCTTTGGGGTTCG+AGG | - | chr8.1:33203669-33203688 | MS.gene70017:intron | 45.0% |
ATAGGAAGGTCTACACGAGG+CGG | - | chr8.1:33202137-33202156 | MS.gene70017:intron | 50.0% | |
ATCCCCCCACCTCTTGTAAT+AGG | + | chr8.1:33201807-33201826 | None:intergenic | 50.0% | |
ATGCTTGTGTGGAGGGAAGA+AGG | + | chr8.1:33201903-33201922 | None:intergenic | 50.0% | |
ATTCATTCCCTGCTATCGGG+TGG | - | chr8.1:33204860-33204879 | MS.gene70017:intron | 50.0% | |
CCAACACTGATCAAGCTTCG+TGG | + | chr8.1:33202550-33202569 | None:intergenic | 50.0% | |
CCACGAAGCTTGATCAGTGT+TGG | - | chr8.1:33202547-33202566 | MS.gene70017:intron | 50.0% | |
CCCTTAAATCCCCACATTGC+CGG | + | chr8.1:33200593-33200612 | None:intergenic | 50.0% | |
CCGGCAATGTGGGGATTTAA+GGG | - | chr8.1:33200590-33200609 | MS.gene70017:CDS | 50.0% | |
GATGTTGGAGGCTGCAATGA+AGG | + | chr8.1:33200940-33200959 | None:intergenic | 50.0% | |
GCCCAAAACTTCCGATGGTT+TGG | - | chr8.1:33204882-33204901 | MS.gene70017:CDS | 50.0% | |
GCTGTAACCGTTGGAGATGT+TGG | + | chr8.1:33200955-33200974 | None:intergenic | 50.0% | |
GTAACCGTTGGAGATGTTGG+AGG | + | chr8.1:33200952-33200971 | None:intergenic | 50.0% | |
GTGCCTACTATCTGTCCTCT+AGG | + | chr8.1:33202092-33202111 | None:intergenic | 50.0% | |
GTGTTCCCACTAAACCACAG+TGG | + | chr8.1:33202685-33202704 | None:intergenic | 50.0% | |
TAGTCAAATAGCGGCTCCCA+TGG | + | chr8.1:33200841-33200860 | None:intergenic | 50.0% | |
TCCGGCAATGTGGGGATTTA+AGG | - | chr8.1:33200589-33200608 | MS.gene70017:CDS | 50.0% | |
TCTAAGAAAGTGGCCGGGAT+GGG | - | chr8.1:33202160-33202179 | MS.gene70017:intron | 50.0% | |
TGCTGCCTCATCCAAACCAT+CGG | + | chr8.1:33204896-33204915 | None:intergenic | 50.0% | |
TTCAGCAGCAAGAACCCATC+TGG | + | chr8.1:33200642-33200661 | None:intergenic | 50.0% | |
TTGGATGATCCGGCAATGTG+GGG | - | chr8.1:33200581-33200600 | MS.gene70017:CDS | 50.0% | |
! | CGTTGTTAGAGCACTCTAGC+AGG | + | chr8.1:33201357-33201376 | None:intergenic | 50.0% |
! | GAGCACATGAATGAAGCGCT+TGG | - | chr8.1:33201834-33201853 | MS.gene70017:intron | 50.0% |
! | GTTAGAGCACTCTAGCAGGA+AGG | + | chr8.1:33201353-33201372 | None:intergenic | 50.0% |
AGGCAATCCTCGAACCCCAA+AGG | + | chr8.1:33203679-33203698 | None:intergenic | 55.0% | |
AGGCGGTCTAAGAAAGTGGC+CGG | - | chr8.1:33202154-33202173 | MS.gene70017:intron | 55.0% | |
CAACCCAAAAGCCGCACTGA+AGG | + | chr8.1:33200917-33200936 | None:intergenic | 55.0% | |
CACGAGGCGGTCTAAGAAAG+TGG | - | chr8.1:33202150-33202169 | MS.gene70017:intron | 55.0% | |
GCAGCCTCCAACATCTCCAA+CGG | - | chr8.1:33200945-33200964 | MS.gene70017:intron | 55.0% | |
GCGCTTGGGCGCTTAAATGA+TGG | - | chr8.1:33201849-33201868 | MS.gene70017:intron | 55.0% | |
GTCTAAGAAAGTGGCCGGGA+TGG | - | chr8.1:33202159-33202178 | MS.gene70017:intron | 55.0% | |
TATAGCGCCGCTGTAACCGT+TGG | + | chr8.1:33200964-33200983 | None:intergenic | 55.0% | |
! | CAGCCTTCAGTGCGGCTTTT+GGG | - | chr8.1:33200911-33200930 | MS.gene70017:intron | 55.0% |
! | TCAGCCTTCAGTGCGGCTTT+TGG | - | chr8.1:33200910-33200929 | MS.gene70017:intron | 55.0% |
! | TTTTGGGCCACCCGATAGCA+GGG | + | chr8.1:33204870-33204889 | None:intergenic | 55.0% |
GACTCTCACTAGGCCCATCC+CGG | + | chr8.1:33202176-33202195 | None:intergenic | 60.0% | |
GGCGGTCTAAGAAAGTGGCC+GGG | - | chr8.1:33202155-33202174 | MS.gene70017:intron | 60.0% | |
GGGTGGCCCAAAACTTCCGA+TGG | - | chr8.1:33204877-33204896 | MS.gene70017:intron | 60.0% | |
!! | GTTTTGGGCCACCCGATAGC+AGG | + | chr8.1:33204871-33204890 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 33200580 | 33205005 | 33200580 | ID=MS.gene70017 |
chr8.1 | mRNA | 33200580 | 33205005 | 33200580 | ID=MS.gene70017.t1;Parent=MS.gene70017 |
chr8.1 | exon | 33204878 | 33205005 | 33204878 | ID=MS.gene70017.t1.exon1;Parent=MS.gene70017.t1 |
chr8.1 | CDS | 33204878 | 33205005 | 33204878 | ID=cds.MS.gene70017.t1;Parent=MS.gene70017.t1 |
chr8.1 | exon | 33203707 | 33203792 | 33203707 | ID=MS.gene70017.t1.exon2;Parent=MS.gene70017.t1 |
chr8.1 | CDS | 33203707 | 33203792 | 33203707 | ID=cds.MS.gene70017.t1;Parent=MS.gene70017.t1 |
chr8.1 | exon | 33201941 | 33202078 | 33201941 | ID=MS.gene70017.t1.exon3;Parent=MS.gene70017.t1 |
chr8.1 | CDS | 33201941 | 33202078 | 33201941 | ID=cds.MS.gene70017.t1;Parent=MS.gene70017.t1 |
chr8.1 | exon | 33200580 | 33200864 | 33200580 | ID=MS.gene70017.t1.exon4;Parent=MS.gene70017.t1 |
chr8.1 | CDS | 33200580 | 33200864 | 33200580 | ID=cds.MS.gene70017.t1;Parent=MS.gene70017.t1 |
Gene Sequence |
Protein sequence |