Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89663.t1 | XP_024629324.1 | 95.3 | 275 | 10 | 1 | 1 | 272 | 1 | 275 | 7.50E-39 | 171 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89663.t1 | P27484 | 65.4 | 81 | 25 | 1 | 1 | 78 | 1 | 81 | 6.5e-23 | 109.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89663.t1 | A0A396GLK6 | 95.3 | 275 | 10 | 1 | 1 | 272 | 1 | 275 | 5.4e-39 | 171.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene89663.t1 | TF | CSD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene89663 | 0.805185 | 1.51E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene89663 | 0.807899 | 4.03E-50 | -1.69E-46 |
| MS.gene049861 | MS.gene89663 | 0.800776 | 1.23E-48 | -1.69E-46 |
| MS.gene050277 | MS.gene89663 | 0.81498 | 1.17E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene89663 | 0.811391 | 7.17E-51 | -1.69E-46 |
| MS.gene050320 | MS.gene89663 | 0.831283 | 1.82E-55 | -1.69E-46 |
| MS.gene050359 | MS.gene89663 | 0.800652 | 1.30E-48 | -1.69E-46 |
| MS.gene050752 | MS.gene89663 | 0.844722 | 6.34E-59 | -1.69E-46 |
| MS.gene050838 | MS.gene89663 | 0.873572 | 1.33E-67 | -1.69E-46 |
| MS.gene050955 | MS.gene89663 | 0.817236 | 3.66E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene89663 | 0.831347 | 1.76E-55 | -1.69E-46 |
| MS.gene051233 | MS.gene89663 | 0.855649 | 5.47E-62 | -1.69E-46 |
| MS.gene051234 | MS.gene89663 | 0.838107 | 3.50E-57 | -1.69E-46 |
| MS.gene051343 | MS.gene89663 | 0.818379 | 2.02E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene89663 | 0.832717 | 8.06E-56 | -1.69E-46 |
| MS.gene051748 | MS.gene89663 | 0.848813 | 4.83E-60 | -1.69E-46 |
| MS.gene051756 | MS.gene89663 | 0.826429 | 2.73E-54 | -1.69E-46 |
| MS.gene051850 | MS.gene89663 | 0.817805 | 2.73E-52 | -1.69E-46 |
| MS.gene051902 | MS.gene89663 | 0.811667 | 6.24E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene89663 | 0.87087 | 1.05E-66 | -1.69E-46 |
| MS.gene052296 | MS.gene89663 | 0.840986 | 6.25E-58 | -1.69E-46 |
| MS.gene052335 | MS.gene89663 | 0.811559 | 6.59E-51 | -1.69E-46 |
| MS.gene052342 | MS.gene89663 | 0.814528 | 1.47E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene89663 | 0.803209 | 3.89E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene89663 | 0.828197 | 1.03E-54 | -1.69E-46 |
| MS.gene052818 | MS.gene89663 | -0.849943 | 2.34E-60 | -1.69E-46 |
| MS.gene052947 | MS.gene89663 | 0.832472 | 9.27E-56 | -1.69E-46 |
| MS.gene053058 | MS.gene89663 | 0.836133 | 1.12E-56 | -1.69E-46 |
| MS.gene053109 | MS.gene89663 | 0.820386 | 7.05E-53 | -1.69E-46 |
| MS.gene053564 | MS.gene89663 | 0.805479 | 1.31E-49 | -1.69E-46 |
| MS.gene053786 | MS.gene89663 | 0.804734 | 1.87E-49 | -1.69E-46 |
| MS.gene053952 | MS.gene89663 | 0.841842 | 3.72E-58 | -1.69E-46 |
| MS.gene054403 | MS.gene89663 | 0.844759 | 6.20E-59 | -1.69E-46 |
| MS.gene054699 | MS.gene89663 | 0.807929 | 3.98E-50 | -1.69E-46 |
| MS.gene055174 | MS.gene89663 | 0.800401 | 1.47E-48 | -1.69E-46 |
| MS.gene055424 | MS.gene89663 | 0.830118 | 3.52E-55 | -1.69E-46 |
| MS.gene056752 | MS.gene89663 | 0.837465 | 5.11E-57 | -1.69E-46 |
| MS.gene056764 | MS.gene89663 | 0.800346 | 1.50E-48 | -1.69E-46 |
| MS.gene056992 | MS.gene89663 | 0.811547 | 6.63E-51 | -1.69E-46 |
| MS.gene057057 | MS.gene89663 | 0.829948 | 3.87E-55 | -1.69E-46 |
| MS.gene057094 | MS.gene89663 | 0.865144 | 7.31E-65 | -1.69E-46 |
| MS.gene057234 | MS.gene89663 | 0.86175 | 8.24E-64 | -1.69E-46 |
| MS.gene057452 | MS.gene89663 | -0.807846 | 4.14E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene89663 | 0.838651 | 2.53E-57 | -1.69E-46 |
| MS.gene05781 | MS.gene89663 | 0.859003 | 5.58E-63 | -1.69E-46 |
| MS.gene057999 | MS.gene89663 | 0.853741 | 1.96E-61 | -1.69E-46 |
| MS.gene058054 | MS.gene89663 | 0.833937 | 4.00E-56 | -1.69E-46 |
| MS.gene058055 | MS.gene89663 | 0.846601 | 1.96E-59 | -1.69E-46 |
| MS.gene058074 | MS.gene89663 | 0.856963 | 2.25E-62 | -1.69E-46 |
| MS.gene058238 | MS.gene89663 | 0.850108 | 2.10E-60 | -1.69E-46 |
| MS.gene058261 | MS.gene89663 | 0.831099 | 2.02E-55 | -1.69E-46 |
| MS.gene059146 | MS.gene89663 | 0.818992 | 1.47E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene89663 | 0.837378 | 5.38E-57 | -1.69E-46 |
| MS.gene06001 | MS.gene89663 | 0.819269 | 1.27E-52 | -1.69E-46 |
| MS.gene06011 | MS.gene89663 | 0.847669 | 9.99E-60 | -1.69E-46 |
| MS.gene06018 | MS.gene89663 | 0.801789 | 7.63E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene89663 | 0.815189 | 1.05E-51 | -1.69E-46 |
| MS.gene060763 | MS.gene89663 | 0.850524 | 1.61E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89663 | MS.gene030675 | PPI |
| MS.gene89663 | MS.gene58125 | PPI |
| MS.gene28445 | MS.gene89663 | PPI |
| MS.gene89663 | MS.gene70271 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89663.t1 | AT4G36020 | 46.403 | 278 | 124 | 6 | 1 | 271 | 6 | 265 | 5.37e-58 | 186 |
| MS.gene89663.t1 | AT4G36020 | 43.750 | 304 | 128 | 7 | 1 | 271 | 6 | 299 | 6.31e-57 | 184 |
| MS.gene89663.t1 | AT4G36020 | 43.750 | 304 | 128 | 7 | 1 | 271 | 6 | 299 | 6.31e-57 | 184 |
| MS.gene89663.t1 | AT2G17870 | 45.118 | 297 | 128 | 6 | 5 | 271 | 10 | 301 | 4.54e-46 | 156 |
| MS.gene89663.t1 | AT3G42860 | 30.986 | 142 | 68 | 3 | 140 | 271 | 238 | 359 | 4.89e-15 | 74.7 |
| MS.gene89663.t1 | AT3G42860 | 33.987 | 153 | 76 | 6 | 79 | 216 | 217 | 359 | 5.32e-15 | 74.3 |
| MS.gene89663.t1 | AT3G43590 | 24.107 | 224 | 98 | 5 | 90 | 272 | 153 | 345 | 3.12e-12 | 66.6 |
Find 106 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAACGGTGGCGGTGGATA+TGG | 0.297469 | 8.3:+28071778 | MS.gene89663:CDS |
| AGGGATTGTGTTGAGGCTTC+TGG | 0.315257 | 8.3:+28072090 | MS.gene89663:CDS |
| TCCTAAGGGTGAACCTCTTC+AGG | 0.319731 | 8.3:+28071510 | MS.gene89663:CDS |
| CCTCCACCTCCTCCGCTACT+AGG | 0.388469 | 8.3:-28071862 | None:intergenic |
| ACCGGTGACATCAACGGCTT+TGG | 0.389735 | 8.3:-28071488 | None:intergenic |
| TGTTATACTTGTGGTGATAC+TGG | 0.397825 | 8.3:+28071610 | MS.gene89663:CDS |
| GTGTTGAGGCTTCTGGTTGA+TGG | 0.398672 | 8.3:+28072097 | MS.gene89663:CDS |
| GGTGGTGGCAATAGAAGATT+TGG | 0.399281 | 8.3:+28071997 | MS.gene89663:CDS |
| GGCGGTGGTCGTGGATTTAG+AGG | 0.404791 | 8.3:+28071556 | MS.gene89663:CDS |
| TTTGATGAATCCGAAGCCTT+TGG | 0.409445 | 8.3:-28071344 | None:intergenic |
| AATGAAGGAGGAAGGTTTGA+TGG | 0.418902 | 8.3:+28071937 | MS.gene89663:CDS |
| TATGGTGGAGGCGGTGGTCG+TGG | 0.428154 | 8.3:+28071547 | MS.gene89663:CDS |
| TGCTACAGGTGTGGTGGGGT+TGG | 0.430495 | 8.3:+28071814 | MS.gene89663:CDS |
| GTGAGGTGGGTCACATTGCT+AGG | 0.431855 | 8.3:+28071905 | MS.gene89663:CDS |
| CGTTGATGTCACCGGTCCTA+AGG | 0.435362 | 8.3:+28071495 | MS.gene89663:CDS |
| TTCAACAACACCAAAGGCTT+CGG | 0.440293 | 8.3:+28071334 | MS.gene89663:CDS |
| TTGCTACAAGTGCGGTGAGG+TGG | 0.441683 | 8.3:+28071891 | MS.gene89663:CDS |
| AGAAGGAACGGTGGTGGTGG+TGG | 0.446028 | 8.3:+28071586 | MS.gene89663:CDS |
| CATCTTGCTACAGGTGTGGT+GGG | 0.457817 | 8.3:+28071809 | MS.gene89663:CDS |
| TGCTTTAACTGTGGGAAGGC+AGG | 0.462177 | 8.3:+28072057 | MS.gene89663:CDS |
| GAGAGAAGGAACGGTGGTGG+TGG | 0.470011 | 8.3:+28071583 | MS.gene89663:CDS |
| GGCGGTCGCGATGGAGGAAA+GGG | 0.470963 | 8.3:+28072030 | MS.gene89663:CDS |
| GGTGGTGGTGGCGGTCGCGA+TGG | 0.471463 | 8.3:+28072021 | MS.gene89663:CDS |
| GAGATCTTCGCTATCGTCAT+CGG | 0.473073 | 8.3:-28071368 | None:intergenic |
| GATCGCTCTGGTGGTGGTGG+TGG | 0.473309 | 8.3:+28071679 | MS.gene89663:CDS |
| GATGGCAATGGAAGGTTTGG+TGG | 0.475514 | 8.3:+28071979 | MS.gene89663:CDS |
| AGATCTTCGCTATCGTCATC+GGG | 0.477231 | 8.3:-28071367 | None:intergenic |
| TGCTACAAGTGCGGTGAGGT+GGG | 0.479596 | 8.3:+28071892 | MS.gene89663:CDS |
| GATGATGGCAATGGAAGGTT+TGG | 0.485258 | 8.3:+28071976 | MS.gene89663:CDS |
| GGAAGGTTTGATGGTGGCAA+TGG | 0.488255 | 8.3:+28071946 | MS.gene89663:CDS |
| AGAAGATTTGGTGGTGGTGG+TGG | 0.493233 | 8.3:+28072009 | MS.gene89663:CDS |
| GATAACTATGGTGGAGGCGG+TGG | 0.494167 | 8.3:+28071541 | MS.gene89663:CDS |
| GCTAGGGATTGCAGCAATGA+AGG | 0.495094 | 8.3:+28071922 | MS.gene89663:CDS |
| ACCTGAAGAGGTTCACCCTT+AGG | 0.495108 | 8.3:-28071511 | None:intergenic |
| TGGCGGTCGCGATGGAGGAA+AGG | 0.495347 | 8.3:+28072029 | MS.gene89663:CDS |
| GTGATACTGGTCACATCGCT+AGG | 0.498797 | 8.3:+28071623 | MS.gene89663:CDS |
| GGTGGTGGCGGTCGCGATGG+AGG | 0.501013 | 8.3:+28072024 | MS.gene89663:CDS |
| ACATCTTGCTACAGGTGTGG+TGG | 0.503337 | 8.3:+28071808 | MS.gene89663:CDS |
| AGGGTGAACCTCTTCAGGTT+AGG | 0.518271 | 8.3:+28071515 | MS.gene89663:CDS |
| GTGGAGGCACATCTTGCTAC+AGG | 0.518304 | 8.3:+28071800 | MS.gene89663:CDS |
| ATCGTTCCGATCGGAATGAT+AGG | 0.521685 | 8.3:+28071653 | MS.gene89663:CDS |
| AATAGAAGATTTGGTGGTGG+TGG | 0.523689 | 8.3:+28072006 | MS.gene89663:CDS |
| AGTAGCGGAGGAGGTGGAGG+CGG | 0.525117 | 8.3:+28071865 | MS.gene89663:CDS |
| AACAACAACAACGGTGGCGG+TGG | 0.527907 | 8.3:+28071772 | MS.gene89663:CDS |
| TGAACCTCTTCAGGTTAGGC+AGG | 0.528588 | 8.3:+28071519 | MS.gene89663:CDS |
| GGTGAGAGAAGGAACGGTGG+TGG | 0.532764 | 8.3:+28071580 | MS.gene89663:CDS |
| AATGATCGCTCTGGTGGTGG+TGG | 0.533030 | 8.3:+28071676 | MS.gene89663:CDS |
| TTTGCTAGGGATTGCATGCG+TGG | 0.536617 | 8.3:+28071745 | MS.gene89663:CDS |
| ACAATCGCCGACGGCGATAA+CGG | 0.537846 | 8.3:+28071460 | MS.gene89663:CDS |
| CCTAGTAGCGGAGGAGGTGG+AGG | 0.539867 | 8.3:+28071862 | MS.gene89663:CDS |
| GGTTTGATGGTGGCAATGGA+AGG | 0.540936 | 8.3:+28071950 | MS.gene89663:CDS |
| CAGGTTAGGCAGGATAACTA+TGG | 0.541696 | 8.3:+28071529 | MS.gene89663:CDS |
| CAATCTGACATCAGATCTGA+AGG | 0.544978 | 8.3:+28071400 | MS.gene89663:CDS |
| ACCAAAGCCGTTGATGTCAC+CGG | 0.550585 | 8.3:+28071487 | MS.gene89663:CDS |
| GACCGTGCTTGCTATACTTG+TGG | 0.551573 | 8.3:+28071709 | MS.gene89663:CDS |
| TTATCCTGCCTAACCTGAAG+AGG | 0.553752 | 8.3:-28071523 | None:intergenic |
| AACGGTGGCGGTGGATATGG+TGG | 0.558225 | 8.3:+28071781 | MS.gene89663:CDS |
| GAATCAGCGGCGTTGTGCAA+TGG | 0.564726 | 8.3:+28071311 | MS.gene89663:CDS |
| CAGGATAACTATGGTGGAGG+CGG | 0.564822 | 8.3:+28071538 | MS.gene89663:CDS |
| AGAGGTGGTGAGAGAAGGAA+CGG | 0.569558 | 8.3:+28071574 | MS.gene89663:CDS |
| GATTTAGAGGTGGTGAGAGA+AGG | 0.570831 | 8.3:+28071569 | MS.gene89663:CDS |
| GGTGGTGGTTGTTATACTTG+TGG | 0.572889 | 8.3:+28071601 | MS.gene89663:CDS |
| AGGAATGATCGCTCTGGTGG+TGG | 0.574103 | 8.3:+28071673 | MS.gene89663:CDS |
| GGTGGCAATAGAAGATTTGG+TGG | 0.577491 | 8.3:+28072000 | MS.gene89663:CDS |
| AAGGGCACATGCTTTAACTG+TGG | 0.580636 | 8.3:+28072048 | MS.gene89663:CDS |
| AATGATAGGAATGATCGCTC+TGG | 0.580640 | 8.3:+28071667 | MS.gene89663:CDS |
| ACTCCTAGTAGCGGAGGAGG+TGG | 0.581353 | 8.3:+28071859 | MS.gene89663:CDS |
| GTTGATGTCACCGGTCCTAA+GGG | 0.586474 | 8.3:+28071496 | MS.gene89663:CDS |
| AAGAGGTTCACCCTTAGGAC+CGG | 0.590248 | 8.3:-28071506 | None:intergenic |
| AGGGCACATGCTTTAACTGT+GGG | 0.595542 | 8.3:+28072049 | MS.gene89663:CDS |
| GGCAATAGAAGATTTGGTGG+TGG | 0.596443 | 8.3:+28072003 | MS.gene89663:CDS |
| GTCGAGTTCACAATCGCCGA+CGG | 0.599723 | 8.3:+28071451 | MS.gene89663:CDS |
| TGAGGTGGGTCACATTGCTA+GGG | 0.600577 | 8.3:+28071906 | MS.gene89663:CDS |
| GGCAATGGAAGGTTTGGTGG+TGG | 0.602525 | 8.3:+28071982 | MS.gene89663:CDS |
| ATTGCAGCAATGAAGGAGGA+AGG | 0.604316 | 8.3:+28071929 | MS.gene89663:CDS |
| AACCACAAGTATAGCAAGCA+CGG | 0.605269 | 8.3:-28071711 | None:intergenic |
| ATCTTGCTACAGGTGTGGTG+GGG | 0.605984 | 8.3:+28071810 | MS.gene89663:CDS |
| CTTAGGACCGGTGACATCAA+CGG | 0.607581 | 8.3:-28071494 | None:intergenic |
| GGAAGGTATGATGATGGCAA+TGG | 0.610842 | 8.3:+28071967 | MS.gene89663:CDS |
| GGTGGCGGTGGATATGGTGG+AGG | 0.611131 | 8.3:+28071784 | MS.gene89663:CDS |
| ATCATTCCTATCATTCCGAT+CGG | 0.613940 | 8.3:-28071659 | None:intergenic |
| AAGTATAGCAAGCACGGTCA+CGG | 0.614873 | 8.3:-28071705 | None:intergenic |
| GCTACTCCTAGTAGCGGAGG+AGG | 0.616706 | 8.3:+28071856 | MS.gene89663:CDS |
| CACATGCTTTAACTGTGGGA+AGG | 0.620078 | 8.3:+28072053 | MS.gene89663:CDS |
| CGCTTGCTACAAGTGCGGTG+AGG | 0.620901 | 8.3:+28071888 | MS.gene89663:CDS |
| GGTAACAACAACAACGGTGG+CGG | 0.621033 | 8.3:+28071769 | MS.gene89663:CDS |
| GGTATGATGATGGCAATGGA+AGG | 0.623747 | 8.3:+28071971 | MS.gene89663:CDS |
| GGCAATGGAAGGTATGATGA+TGG | 0.625626 | 8.3:+28071961 | MS.gene89663:CDS |
| GTTAGGCAGGATAACTATGG+TGG | 0.630912 | 8.3:+28071532 | MS.gene89663:CDS |
| CAATGGTTCAACAACACCAA+AGG | 0.631353 | 8.3:+28071328 | MS.gene89663:CDS |
| TGCGCTACTCCTAGTAGCGG+AGG | 0.632546 | 8.3:+28071853 | MS.gene89663:CDS |
| AGGCAGGATAACTATGGTGG+AGG | 0.633369 | 8.3:+28071535 | MS.gene89663:CDS |
| GGCACATCTTGCTACAGGTG+TGG | 0.637876 | 8.3:+28071805 | MS.gene89663:CDS |
| GGCGGCGCTTGCTACAAGTG+CGG | 0.643268 | 8.3:+28071883 | MS.gene89663:CDS |
| AGGGATTGCAGCAATGAAGG+AGG | 0.643394 | 8.3:+28071925 | MS.gene89663:CDS |
| TGATACTGGTCACATCGCTA+GGG | 0.645119 | 8.3:+28071624 | MS.gene89663:CDS |
| GGGATTGTGATCGTTCCGAT+CGG | 0.645526 | 8.3:+28071644 | MS.gene89663:CDS |
| GCTAGGGATTGCATGCGTGG+AGG | 0.656728 | 8.3:+28071748 | MS.gene89663:CDS |
| GGTGGTGAGAGAAGGAACGG+TGG | 0.661941 | 8.3:+28071577 | MS.gene89663:CDS |
| GGTGGTCGTGGATTTAGAGG+TGG | 0.664065 | 8.3:+28071559 | MS.gene89663:CDS |
| GATTGCGCTACTCCTAGTAG+CGG | 0.671173 | 8.3:+28071850 | MS.gene89663:CDS |
| GATAGGAATGATCGCTCTGG+TGG | 0.671256 | 8.3:+28071670 | MS.gene89663:CDS |
| GAAGGAGGAAGGTTTGATGG+TGG | 0.685560 | 8.3:+28071940 | MS.gene89663:CDS |
| ATGGCGGAGGAGAGAATCAG+CGG | 0.694395 | 8.3:+28071298 | MS.gene89663:CDS |
| CGTGGAGGTAACAACAACAA+CGG | 0.709705 | 8.3:+28071763 | MS.gene89663:CDS |
| GGAGGTAACAACAACAACGG+TGG | 0.733946 | 8.3:+28071766 | MS.gene89663:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTTTGAACATTTTGCTA+GGG | + | chr8.3:28071732-28071751 | MS.gene89663:CDS | 25.0% |
| ! | GTTCTTTTGAACATTTTGCT+AGG | + | chr8.3:28071731-28071750 | MS.gene89663:CDS | 30.0% |
| ATCATTCCTATCATTCCGAT+CGG | - | chr8.3:28071662-28071681 | None:intergenic | 35.0% | |
| TGTTATACTTGTGGTGATAC+TGG | + | chr8.3:28071610-28071629 | MS.gene89663:CDS | 35.0% | |
| AACCACAAGTATAGCAAGCA+CGG | - | chr8.3:28071714-28071733 | None:intergenic | 40.0% | |
| AATGAAGGAGGAAGGTTTGA+TGG | + | chr8.3:28071937-28071956 | MS.gene89663:CDS | 40.0% | |
| AATGATAGGAATGATCGCTC+TGG | + | chr8.3:28071667-28071686 | MS.gene89663:CDS | 40.0% | |
| CAATCTGACATCAGATCTGA+AGG | + | chr8.3:28071400-28071419 | MS.gene89663:CDS | 40.0% | |
| CAATGGTTCAACAACACCAA+AGG | + | chr8.3:28071328-28071347 | MS.gene89663:CDS | 40.0% | |
| TTCAACAACACCAAAGGCTT+CGG | + | chr8.3:28071334-28071353 | MS.gene89663:CDS | 40.0% | |
| TTTGATGAATCCGAAGCCTT+TGG | - | chr8.3:28071347-28071366 | None:intergenic | 40.0% | |
| ! | TTTTGCAAGGGATTGTGTTG+AGG | + | chr8.3:28072083-28072102 | MS.gene89663:CDS | 40.0% |
| !! | AATAGAAGATTTGGTGGTGG+TGG | + | chr8.3:28072006-28072025 | MS.gene89663:CDS | 40.0% |
| AAGTATAGCAAGCACGGTCA+CGG | - | chr8.3:28071708-28071727 | None:intergenic | 45.0% | |
| AGATCTTCGCTATCGTCATC+GGG | - | chr8.3:28071370-28071389 | None:intergenic | 45.0% | |
| AGGGCACATGCTTTAACTGT+GGG | + | chr8.3:28072049-28072068 | MS.gene89663:CDS | 45.0% | |
| ATCGTTCCGATCGGAATGAT+AGG | + | chr8.3:28071653-28071672 | MS.gene89663:CDS | 45.0% | |
| ATTGCAGCAATGAAGGAGGA+AGG | + | chr8.3:28071929-28071948 | MS.gene89663:CDS | 45.0% | |
| CACATGCTTTAACTGTGGGA+AGG | + | chr8.3:28072053-28072072 | MS.gene89663:CDS | 45.0% | |
| CAGGTTAGGCAGGATAACTA+TGG | + | chr8.3:28071529-28071548 | MS.gene89663:CDS | 45.0% | |
| CGTGGAGGTAACAACAACAA+CGG | + | chr8.3:28071763-28071782 | MS.gene89663:CDS | 45.0% | |
| GAGATCTTCGCTATCGTCAT+CGG | - | chr8.3:28071371-28071390 | None:intergenic | 45.0% | |
| GATTTAGAGGTGGTGAGAGA+AGG | + | chr8.3:28071569-28071588 | MS.gene89663:CDS | 45.0% | |
| GGTGGCAATAGAAGATTTGG+TGG | + | chr8.3:28072000-28072019 | MS.gene89663:CDS | 45.0% | |
| GTTAGGCAGGATAACTATGG+TGG | + | chr8.3:28071532-28071551 | MS.gene89663:CDS | 45.0% | |
| TGATACTGGTCACATCGCTA+GGG | + | chr8.3:28071624-28071643 | MS.gene89663:CDS | 45.0% | |
| TTATCCTGCCTAACCTGAAG+AGG | - | chr8.3:28071526-28071545 | None:intergenic | 45.0% | |
| ! | AAGGGCACATGCTTTAACTG+TGG | + | chr8.3:28072048-28072067 | MS.gene89663:CDS | 45.0% |
| ! | GAAGGCAGGACATTTTGCAA+GGG | + | chr8.3:28072071-28072090 | MS.gene89663:CDS | 45.0% |
| ! | GATGATGGCAATGGAAGGTT+TGG | + | chr8.3:28071976-28071995 | MS.gene89663:CDS | 45.0% |
| ! | GGATTTCGCTCTCTTTTCGA+AGG | + | chr8.3:28071421-28071440 | MS.gene89663:CDS | 45.0% |
| ! | GGCAATGGAAGGTATGATGA+TGG | + | chr8.3:28071961-28071980 | MS.gene89663:CDS | 45.0% |
| ! | GGTGGTGGCAATAGAAGATT+TGG | + | chr8.3:28071997-28072016 | MS.gene89663:CDS | 45.0% |
| ! | GGTGGTGGTTGTTATACTTG+TGG | + | chr8.3:28071601-28071620 | MS.gene89663:CDS | 45.0% |
| !! | GGAAGGTATGATGATGGCAA+TGG | + | chr8.3:28071967-28071986 | MS.gene89663:CDS | 45.0% |
| !! | GGCAATAGAAGATTTGGTGG+TGG | + | chr8.3:28072003-28072022 | MS.gene89663:CDS | 45.0% |
| !! | GGTATGATGATGGCAATGGA+AGG | + | chr8.3:28071971-28071990 | MS.gene89663:CDS | 45.0% |
| AAGAGGTTCACCCTTAGGAC+CGG | - | chr8.3:28071509-28071528 | None:intergenic | 50.0% | |
| ACATCTTGCTACAGGTGTGG+TGG | + | chr8.3:28071808-28071827 | MS.gene89663:CDS | 50.0% | |
| ACCAAAGCCGTTGATGTCAC+CGG | + | chr8.3:28071487-28071506 | MS.gene89663:CDS | 50.0% | |
| ACCTGAAGAGGTTCACCCTT+AGG | - | chr8.3:28071514-28071533 | None:intergenic | 50.0% | |
| AGAGGTGGTGAGAGAAGGAA+CGG | + | chr8.3:28071574-28071593 | MS.gene89663:CDS | 50.0% | |
| AGGCAGGATAACTATGGTGG+AGG | + | chr8.3:28071535-28071554 | MS.gene89663:CDS | 50.0% | |
| AGGGATTGCAGCAATGAAGG+AGG | + | chr8.3:28071925-28071944 | MS.gene89663:CDS | 50.0% | |
| AGGGATTGTGTTGAGGCTTC+TGG | + | chr8.3:28072090-28072109 | MS.gene89663:CDS | 50.0% | |
| ATCTTGCTACAGGTGTGGTG+GGG | + | chr8.3:28071810-28071829 | MS.gene89663:CDS | 50.0% | |
| CATCTTGCTACAGGTGTGGT+GGG | + | chr8.3:28071809-28071828 | MS.gene89663:CDS | 50.0% | |
| CTTAGGACCGGTGACATCAA+CGG | - | chr8.3:28071497-28071516 | None:intergenic | 50.0% | |
| GAAGGAGGAAGGTTTGATGG+TGG | + | chr8.3:28071940-28071959 | MS.gene89663:CDS | 50.0% | |
| GATAGGAATGATCGCTCTGG+TGG | + | chr8.3:28071670-28071689 | MS.gene89663:CDS | 50.0% | |
| GATGGCAATGGAAGGTTTGG+TGG | + | chr8.3:28071979-28071998 | MS.gene89663:CDS | 50.0% | |
| GATTGCGCTACTCCTAGTAG+CGG | + | chr8.3:28071850-28071869 | MS.gene89663:CDS | 50.0% | |
| GCTAGGGATTGCAGCAATGA+AGG | + | chr8.3:28071922-28071941 | MS.gene89663:CDS | 50.0% | |
| GGAGGTAACAACAACAACGG+TGG | + | chr8.3:28071766-28071785 | MS.gene89663:CDS | 50.0% | |
| GGGATTGTGATCGTTCCGAT+CGG | + | chr8.3:28071644-28071663 | MS.gene89663:CDS | 50.0% | |
| GGTAACAACAACAACGGTGG+CGG | + | chr8.3:28071769-28071788 | MS.gene89663:CDS | 50.0% | |
| GTGATACTGGTCACATCGCT+AGG | + | chr8.3:28071623-28071642 | MS.gene89663:CDS | 50.0% | |
| GTTGATGTCACCGGTCCTAA+GGG | + | chr8.3:28071496-28071515 | MS.gene89663:CDS | 50.0% | |
| TCCTAAGGGTGAACCTCTTC+AGG | + | chr8.3:28071510-28071529 | MS.gene89663:CDS | 50.0% | |
| TGAGGTGGGTCACATTGCTA+GGG | + | chr8.3:28071906-28071925 | MS.gene89663:CDS | 50.0% | |
| TGCTTTAACTGTGGGAAGGC+AGG | + | chr8.3:28072057-28072076 | MS.gene89663:CDS | 50.0% | |
| TTTGCTAGGGATTGCATGCG+TGG | + | chr8.3:28071745-28071764 | MS.gene89663:CDS | 50.0% | |
| ! | AGGGTGAACCTCTTCAGGTT+AGG | + | chr8.3:28071515-28071534 | MS.gene89663:CDS | 50.0% |
| ! | CAGGATAACTATGGTGGAGG+CGG | + | chr8.3:28071538-28071557 | MS.gene89663:CDS | 50.0% |
| ! | GGAAGGCAGGACATTTTGCA+AGG | + | chr8.3:28072070-28072089 | MS.gene89663:CDS | 50.0% |
| ! | GGTTTTACCGTTATCGCCGT+CGG | - | chr8.3:28071470-28071489 | None:intergenic | 50.0% |
| ! | TGAACCTCTTCAGGTTAGGC+AGG | + | chr8.3:28071519-28071538 | MS.gene89663:CDS | 50.0% |
| !! | AGAAGATTTGGTGGTGGTGG+TGG | + | chr8.3:28072009-28072028 | MS.gene89663:CDS | 50.0% |
| !! | GACCGTGCTTGCTATACTTG+TGG | + | chr8.3:28071709-28071728 | MS.gene89663:CDS | 50.0% |
| !! | GGAAGGTTTGATGGTGGCAA+TGG | + | chr8.3:28071946-28071965 | MS.gene89663:CDS | 50.0% |
| !! | GGTTTGATGGTGGCAATGGA+AGG | + | chr8.3:28071950-28071969 | MS.gene89663:CDS | 50.0% |
| ACAATCGCCGACGGCGATAA+CGG | + | chr8.3:28071460-28071479 | MS.gene89663:CDS | 55.0% | |
| ACCGGTGACATCAACGGCTT+TGG | - | chr8.3:28071491-28071510 | None:intergenic | 55.0% | |
| AGGAATGATCGCTCTGGTGG+TGG | + | chr8.3:28071673-28071692 | MS.gene89663:CDS | 55.0% | |
| CGTTGATGTCACCGGTCCTA+AGG | + | chr8.3:28071495-28071514 | MS.gene89663:CDS | 55.0% | |
| GAATCAGCGGCGTTGTGCAA+TGG | + | chr8.3:28071311-28071330 | MS.gene89663:CDS | 55.0% | |
| GGCACATCTTGCTACAGGTG+TGG | + | chr8.3:28071805-28071824 | MS.gene89663:CDS | 55.0% | |
| GGTGGTCGTGGATTTAGAGG+TGG | + | chr8.3:28071559-28071578 | MS.gene89663:CDS | 55.0% | |
| GTCGAGTTCACAATCGCCGA+CGG | + | chr8.3:28071451-28071470 | MS.gene89663:CDS | 55.0% | |
| GTGAGGTGGGTCACATTGCT+AGG | + | chr8.3:28071905-28071924 | MS.gene89663:CDS | 55.0% | |
| TGCTACAAGTGCGGTGAGGT+GGG | + | chr8.3:28071892-28071911 | MS.gene89663:CDS | 55.0% | |
| TTGCTACAAGTGCGGTGAGG+TGG | + | chr8.3:28071891-28071910 | MS.gene89663:CDS | 55.0% | |
| ! | AACAACAACAACGGTGGCGG+TGG | + | chr8.3:28071772-28071791 | MS.gene89663:CDS | 55.0% |
| ! | AACAACGGTGGCGGTGGATA+TGG | + | chr8.3:28071778-28071797 | MS.gene89663:CDS | 55.0% |
| ! | ATGGCGGAGGAGAGAATCAG+CGG | + | chr8.3:28071298-28071317 | MS.gene89663:CDS | 55.0% |
| ! | GATAACTATGGTGGAGGCGG+TGG | + | chr8.3:28071541-28071560 | MS.gene89663:CDS | 55.0% |
| ! | GTGGAGGCACATCTTGCTAC+AGG | + | chr8.3:28071800-28071819 | MS.gene89663:CDS | 55.0% |
| !! | AATGATCGCTCTGGTGGTGG+TGG | + | chr8.3:28071676-28071695 | MS.gene89663:CDS | 55.0% |
| !! | AGATTTGGTGGTGGTGGTGG+CGG | + | chr8.3:28072012-28072031 | MS.gene89663:CDS | 55.0% |
| !! | GGCAATGGAAGGTTTGGTGG+TGG | + | chr8.3:28071982-28072001 | MS.gene89663:CDS | 55.0% |
| GCTAGGGATTGCATGCGTGG+AGG | + | chr8.3:28071748-28071767 | MS.gene89663:CDS | 60.0% | |
| GGCGGTGGTCGTGGATTTAG+AGG | + | chr8.3:28071556-28071575 | MS.gene89663:CDS | 60.0% | |
| GGTGAGAGAAGGAACGGTGG+TGG | + | chr8.3:28071580-28071599 | MS.gene89663:CDS | 60.0% | |
| GGTGGTGAGAGAAGGAACGG+TGG | + | chr8.3:28071577-28071596 | MS.gene89663:CDS | 60.0% | |
| TGCGCTACTCCTAGTAGCGG+AGG | + | chr8.3:28071853-28071872 | MS.gene89663:CDS | 60.0% | |
| ! | AACGGTGGCGGTGGATATGG+TGG | + | chr8.3:28071781-28071800 | MS.gene89663:CDS | 60.0% |
| ! | ACTCCTAGTAGCGGAGGAGG+TGG | + | chr8.3:28071859-28071878 | MS.gene89663:CDS | 60.0% |
| ! | CGCTTGCTACAAGTGCGGTG+AGG | + | chr8.3:28071888-28071907 | MS.gene89663:CDS | 60.0% |
| ! | GAGAGAAGGAACGGTGGTGG+TGG | + | chr8.3:28071583-28071602 | MS.gene89663:CDS | 60.0% |
| ! | GCTACTCCTAGTAGCGGAGG+AGG | + | chr8.3:28071856-28071875 | MS.gene89663:CDS | 60.0% |
| ! | TGCTACAGGTGTGGTGGGGT+TGG | + | chr8.3:28071814-28071833 | MS.gene89663:CDS | 60.0% |
| !! | AGAAGGAACGGTGGTGGTGG+TGG | + | chr8.3:28071586-28071605 | MS.gene89663:CDS | 60.0% |
| CCTCCACCTCCTCCGCTACT+AGG | - | chr8.3:28071865-28071884 | None:intergenic | 65.0% | |
| GGCGGTCGCGATGGAGGAAA+GGG | + | chr8.3:28072030-28072049 | MS.gene89663:CDS | 65.0% | |
| TGGCGGTCGCGATGGAGGAA+AGG | + | chr8.3:28072029-28072048 | MS.gene89663:CDS | 65.0% | |
| ! | AGTAGCGGAGGAGGTGGAGG+CGG | + | chr8.3:28071865-28071884 | MS.gene89663:CDS | 65.0% |
| ! | CCTAGTAGCGGAGGAGGTGG+AGG | + | chr8.3:28071862-28071881 | MS.gene89663:CDS | 65.0% |
| ! | GGCGGCGCTTGCTACAAGTG+CGG | + | chr8.3:28071883-28071902 | MS.gene89663:CDS | 65.0% |
| ! | GGTGGCGGTGGATATGGTGG+AGG | + | chr8.3:28071784-28071803 | MS.gene89663:CDS | 65.0% |
| ! | TATGGTGGAGGCGGTGGTCG+TGG | + | chr8.3:28071547-28071566 | MS.gene89663:CDS | 65.0% |
| !! | GATCGCTCTGGTGGTGGTGG+TGG | + | chr8.3:28071679-28071698 | MS.gene89663:CDS | 65.0% |
| !! | GGTGGTGGCGGTCGCGATGG+AGG | + | chr8.3:28072024-28072043 | MS.gene89663:CDS | 75.0% |
| !! | GGTGGTGGTGGCGGTCGCGA+TGG | + | chr8.3:28072021-28072040 | MS.gene89663:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 28071298 | 28072116 | 28071298 | ID=MS.gene89663 |
| chr8.3 | mRNA | 28071298 | 28072116 | 28071298 | ID=MS.gene89663.t1;Parent=MS.gene89663 |
| chr8.3 | exon | 28071298 | 28072116 | 28071298 | ID=MS.gene89663.t1.exon1;Parent=MS.gene89663.t1 |
| chr8.3 | CDS | 28071298 | 28072116 | 28071298 | ID=cds.MS.gene89663.t1;Parent=MS.gene89663.t1 |
| Gene Sequence |
| Protein sequence |
