AlfalfaGEDB | MS.gene036493

M. sativa cultivar XinJiangDaYe / MS.gene036493

KEGG: K14963
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00400.35 PF20426.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036493.t1	XP_003609656.1	100	326	0	0	1	326	1	326	4.00E-63	251.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036493.t1	Q9M2Z2	63.0	54	17	1	1	54	1	51	2.2e-09	64.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036493.t1	G7JKD3	100.0	326	0	0	1	326	1	326	2.9e-63	251.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene004291	MS.gene036493	PPI
MS.gene006263	MS.gene036493	PPI
MS.gene01565	MS.gene036493	PPI
MS.gene036217	MS.gene036493	PPI
MS.gene036493	MS.gene54295	PPI
MS.gene036493	MS.gene89484	PPI
MS.gene036493	MS.gene002611	PPI
MS.gene036493	MS.gene002583	PPI
MS.gene036493	MS.gene006264	PPI
MS.gene036493	MS.gene061157	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036493.t1	MTR_4g119620	99.693	326	1	0	1	326	1	326	0.0	671
MS.gene036493.t1	MTR_1g072140	61.290	310	111	1	14	323	14	314	5.48e-142	404
MS.gene036493.t1	MTR_8g092620	31.169	308	193	6	16	321	7	297	4.49e-49	166
MS.gene036493.t1	MTR_8g092620	31.190	311	195	6	16	324	14	307	5.89e-47	161
MS.gene036493.t1	MTR_8g092620	25.778	225	148	8	101	320	7	217	7.13e-11	62.8
MS.gene036493.t1	MTR_7g086360	31.023	303	189	9	23	318	51	340	7.16e-39	140
MS.gene036493.t1	MTR_7g086360	29.907	214	139	6	111	321	46	251	8.21e-22	94.7
MS.gene036493.t1	MTR_1g054300	28.238	386	177	7	20	321	112	481	2.17e-37	139
MS.gene036493.t1	MTR_1g054300	26.667	210	143	5	108	312	107	310	2.81e-15	76.6
MS.gene036493.t1	MTR_4g102520	27.964	329	210	10	6	321	270	584	6.60e-34	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036493.t1	AT3G49660	71.166	326	85	3	1	326	1	317	1.54e-180	501
MS.gene036493.t1	AT4G02730	60.772	311	112	2	14	323	30	331	9.06e-141	401
MS.gene036493.t1	AT4G02730	26.744	172	119	4	155	325	36	201	3.68e-12	66.6
MS.gene036493.t1	AT5G64730	29.747	316	201	7	11	323	2	299	8.08e-47	160
MS.gene036493.t1	AT2G43770	31.373	306	184	10	23	318	49	338	2.97e-40	144
MS.gene036493.t1	AT2G43770	29.756	205	135	5	113	314	46	244	6.16e-21	92.4
MS.gene036493.t1	AT2G41500	28.523	298	199	6	25	322	253	536	1.94e-35	135
MS.gene036493.t1	AT2G41500	31.128	257	160	7	23	277	294	535	3.52e-28	114
MS.gene036493.t1	AT2G41500	30.137	219	142	3	18	235	330	538	3.42e-26	108
MS.gene036493.t1	AT2G41500	28.523	298	199	6	25	322	253	536	1.94e-35	135

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Find 94 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTACAGAAATTGGA+AGG	0.596755	8.4:-12169882	MS.gene036493:CDS
AACATACTTCCCATTTGTTA+TGG	0.280580	8.4:+12169956	None:intergenic
AACTTGACATACGAAACAGG+AGG	0.741472	8.4:+12172490	None:intergenic
AAGAGTGAGGCTGTTGGAAT+CGG	0.477276	8.4:+12172924	None:intergenic
AAGATAATTGTATATACTTG+TGG	0.511398	8.4:-12169920	MS.gene036493:CDS
AAGCAATCATGTTCTCCGTA+GGG	0.596643	8.4:+12169826	None:intergenic
AAGTTTCTGAAGACTTACAC+CGG	0.669613	8.4:-12170017	MS.gene036493:CDS
AATGCGAAGTTTATCCTTGT+TGG	0.367001	8.4:-12172460	MS.gene036493:CDS
AATGGCGACAGAAGAACCAA+TGG	0.609103	8.4:-12173106	MS.gene036493:CDS
AATGGGAAGTATGTTGTTGG+TGG	0.600677	8.4:-12169948	MS.gene036493:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGAATGAGTTCCTATAA+TGG	+	chr8.4:12172236-12172255	None:intergenic	30.0%
ACAGCAAATCTCTATTCAAA+TGG	+	chr8.4:12170555-12170574	None:intergenic	30.0%
ACCAAATTGCAATTCCAAAT+GGG	+	chr8.4:12172341-12172360	None:intergenic	30.0%
ACTCCTAAAACTATGAGAAA+GGG	+	chr8.4:12170993-12171012	None:intergenic	30.0%
AGAAATTAAACTTAGGATGC+AGG	-	chr8.4:12171968-12171987	MS.gene036493:intron	30.0%
AGCAAATCTCTATTCAAATG+GGG	+	chr8.4:12170553-12170572	None:intergenic	30.0%
AGTGCAACTCTATATTCAAA+TGG	+	chr8.4:12171801-12171820	None:intergenic	30.0%
ATGATAAGACTGTGAAGATA+TGG	-	chr8.4:12173087-12173106	MS.gene036493:CDS	30.0%
ATTGTTTCCAGTAGTTATGA+TGG	-	chr8.4:12170298-12170317	MS.gene036493:intron	30.0%
CAATTCTATATTCCAATTGG+AGG	+	chr8.4:12170769-12170788	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	12169770	12173127	12169770	ID=MS.gene036493
chr8.4	mRNA	12169770	12173127	12169770	ID=MS.gene036493.t1;Parent=MS.gene036493
chr8.4	exon	12172441	12173127	12172441	ID=MS.gene036493.t1.exon1;Parent=MS.gene036493.t1
chr8.4	CDS	12172441	12173127	12172441	ID=cds.MS.gene036493.t1;Parent=MS.gene036493.t1
chr8.4	exon	12169770	12170063	12169770	ID=MS.gene036493.t1.exon2;Parent=MS.gene036493.t1
chr8.4	CDS	12169770	12170063	12169770	ID=cds.MS.gene036493.t1;Parent=MS.gene036493.t1

Gene Sequence

>MS.gene036493

ATGGCGACAGAAGAACCAATGGATTGTGATTCCTCAAACTACAAACCCTACACACTTTCCCAAACCCTAACCGGCCACAAACGCGCCATCTCCGCCGTCAAATTTTCCTCCAACGGCCGTCTCCTCGCCTCCTCCTCCGCCGACAAAACCCTCCGCACTTACGGCTTCACTAACTCCGATTCCGATTCCAACAGCCTCACTCTTTCTCCTATGCAACAATACGAAGGCCACCAACACGGCGTCTCCGACCTCGCTTTCTCCTCCGATTCCCGCTACCTTGTCTCCGCCTCCGACGACAAAACCATCCGGTTATGGGATGTTCCGACGGGTTCGCTTGTGAAGACTCTTCACGGTCATACCAATTACGTTTTCTGTGTTAATTTCAATCCTCAGAGTAATGTTATTGTTTCTGGTTCGTTTGATGAGACTGTTAGGGTTTGGGATGTTAAGTCTGGGAAGTGTCTTAAGGTTTTACCTGCGCATTCTGATCCGGTCACTGCCGTTGATTTTAGTCGCGATGGGACTCTTATTGTTTCCAGTAGTTATGATGGTCTTTGCAGGATTTGGGATGCTTCTACTGGTCATTGTATCAAGACTCTTATTGATGACGAGAATCCTCCTGTTTCGTATGTCAAGTTTTCGCCTAATGCGAAGTTTATCCTTGTTGGTACATTGGACAATAATCTGGTAATATCTCTCATTTACTCGACTTTCATTTTTAATTTACGGTTGTCGCGTGTGATTCATTCCTTTAAATGTAGAAAATTATAGCTGATATAACCCCATTTGAATAGAGATTTGCTGTTAAATATTGTTGATATAATTCTCTATTGGTATGGAGAATTGCAGTCGAATATTGTTGTCAAGACTCCAATTGAATACAGTTGCACTCAAATACAGTTGATGTGACTCCAATTGAATAGAGAATCATAGTCAAATATAGCTGATATGGCTCTAATTGAATATATAGTTGCAGTTAGTATTTGATATAAGTGACCTCCAATTGGAATATAGAATTGCAGTCAAATATTTTCGATATTCACCCAATAAAAGATATCGGTGGAGCGGAGCGGTGATAACTCAGTCAAAACGGCCGCTTCACCCATGAAAACTTACTGCGTTGCTGTTTAATGCAACATAGAAGAAGAAGAAGCTAACTAAGTACTAGAAAGAATAAGGGAGGACAAAGTGCAGAGTAGTAGAAGATGAAGTTCGGATAACCCTTTCTCATAGTTTTAGGAGTGAAGAAACATAGCAGGAGAGGGCATGTTTCTGTAACACTGTTGTTATGATTCAAATCTAGGGTTGTAACTGTATGACTATGAACCAATGTAGTCAGGATCGAGATCCTACGTAGGATCGGTCTGCCGTTGAAAGAACGTAAACACGAGGAACATAACACGGTTTGTAAGTAGGATCGGTAGGTTGTTGATAGAGTTGAGAGAAATAGATAGAAAAAATAGAGGGAAAACAGAGAAACCAAGCATAAAAACAGAGATAATGGAGGAAAAAGAGAGGAATCAAGCAACAAAATAGAGGAAACAGAGGAAAAACGGCAAAAAACAGAGGAAAAATGGCAAAAAAACTGAGGAAAACCAAACCAGAGTAAAGTCGAAGCATGGTCGAGGTGCTGTGGCACGTAAGATCGTGTGATCCTACATCCTGGGACTTGATCTTTGCTATTGCTATGAACTATTGGGCTTGCTCTTTTTTTTTAACCGTGGGCCTGTTTACACTAGTGTTTTTTTTTTTTTTTTAACCGTGACCTTTTTAAGACTTAACATAAAAATCAATTATATTATGTGTGTGGGATCCTTGGCTGTATGGCTATATGAAAAGGCTAAATGAATTATATTACTCTATAGTCTATGCTGTTGGGTTTCTCCGGTGGGGTCTATTTTCTGTGCAATATTTTGGAATTGAGATCTGTAGTCAAATATTGTTGATTCAACTCCGGTTGGAGCTCAAATATAGCTGAAATGACTCGAATTGAATAGAGAATTGTAGTCAAATATTGTTGATTCAACTCCATTTGAATATAGAGTTGCACTCAAATGTCGCTGATGTGACTCTAGTCAAATACAGCTGACATGACTCCAATTGAATAGAGAATCAGTCAGATGCAGTTTATAACCTGATATGACTCCAATTTAATAGAGTTCACATCAGATATATTTGATTTGACCCTGTTCTGGTCTAGAAATTAAACTTAGGATGCAGGCCCCGATGAAGGAGCGGCGCCCTAGGGTTTATGGGATAAGTGTGTATACAAGAAATCTGATTATTGTCAAGCCCAAATCCAAATGTGGTGCTGGAAATGACTGAATGACATACGGTGAGGTACCACGTGATAAGTGGGATTAATGGCTCTCCTGGTCAGTCGTGTGGGTATCCTCAGGTAGGCTGACTTCTTGGTCGGCCACCATAGGCTCGCTCGGTGGGAACTTGGGCTCCTTTGGTCGGCCATTATAGGAACTCATTCTTGTGCTTTTGGAGTACTGACCTTACGGTACCGTACAGACCCCCTAGTTAGAATAGAGACTTGCAGTAAAATATTGTTGATATAATCCCATTTGGAATTGCAATTTGGTCTATGAGACAAAAAATTATGATTTCTGATGCCACAATCTTCATTGCAGGCCTTTTTAATTTATACTTGACTAAAAACAAGTACATTTTTATTAGAAAATAAAATTTATATATTTGTGGCTATATAGCTATGAAAAAACTATATGAATTACATTACTCTATGCTGTTGTGTTTCTTCAGTAGGGTCTATTTTTTATTTTATTTTGGCAATATTATGTTTTATATTTGTGTAATGGCTTATTTGACTAATGTGATAGATTTTCATTTTTTTGCATCTCATAATGTAGTTTATTTGGTTGGTCAATTGTCTGTGCTGTTGGGCTTTCTTTTCTTATTCTTCACGTTTCAATGTGTTATAGTGTGTCTGGACTTTGGAAATATAGTTGAGGTCTCTGGAAGGGATTGACATACAAGTACCTAGATTAGTTGTTCAAGTTTTTATTGACTTATATGGGGAATTTTTTTGTCCCTGCAGAGGCTTTGGAACTATTCTACTGGGAAGTTTCTGAAGACTTACACCGGTCATGTTAATTCAAAATACTGCATTTCATCCTCTTTTTCCATAACAAATGGGAAGTATGTTGTTGGTGGTTCGGAAGATAATTGTATATACTTGTGGGGTCTGCAGTCGAGGAAAATTGTACAGAAATTGGAAGGTCATACTGATTCTGTTGTATCTGTTTCATGTCACCCTACGGAGAACATGATTGCTTCAGGTGCACTCGGCAATGATAAGACTGTGAAGATATGGACTCAACAGAAAGACTGA

Protein sequence

>MS.gene036493.t1

MATEEPMDCDSSNYKPYTLSQTLTGHKRAISAVKFSSNGRLLASSSADKTLRTYGFTNSDSDSNSLTLSPMQQYEGHQHGVSDLAFSSDSRYLVSASDDKTIRLWDVPTGSLVKTLHGHTNYVFCVNFNPQSNVIVSGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVDFSRDGTLIVSSSYDGLCRIWDASTGHCIKTLIDDENPPVSYVKFSPNAKFILVGTLDNNLRLWNYSTGKFLKTYTGHVNSKYCISSSFSITNGKYVVGGSEDNCIYLWGLQSRKIVQKLEGHTDSVVSVSCHPTENMIASGALGNDKTVKIWTQQKD