Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70291.t1 | XP_003630138.1 | 99.4 | 175 | 1 | 0 | 1 | 175 | 38 | 212 | 5.10E-89 | 337 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70291.t1 | G7LBD4 | 99.4 | 175 | 1 | 0 | 1 | 175 | 38 | 212 | 3.7e-89 | 337.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049850 | MS.gene70291 | -0.802646 | 5.08E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene70291 | -0.807934 | 3.97E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene70291 | -0.814786 | 1.29E-51 | -1.69E-46 |
| MS.gene052056 | MS.gene70291 | 0.825583 | 4.33E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene70291 | -0.820348 | 7.19E-53 | -1.69E-46 |
| MS.gene052673 | MS.gene70291 | 0.847552 | 1.08E-59 | -1.69E-46 |
| MS.gene053054 | MS.gene70291 | 0.870286 | 1.64E-66 | -1.69E-46 |
| MS.gene055357 | MS.gene70291 | -0.818187 | 2.23E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene70291 | 0.861907 | 7.38E-64 | -1.69E-46 |
| MS.gene060480 | MS.gene70291 | -0.806522 | 7.90E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene70291 | 0.815408 | 9.39E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70291.t1 | MTR_8g092210 | 99.429 | 175 | 1 | 0 | 1 | 175 | 38 | 212 | 2.69e-130 | 363 |
| MS.gene70291.t1 | MTR_6g043220 | 45.402 | 174 | 72 | 5 | 1 | 167 | 38 | 195 | 5.38e-40 | 134 |
| MS.gene70291.t1 | MTR_1g098250 | 45.614 | 171 | 88 | 5 | 1 | 167 | 38 | 207 | 1.34e-37 | 128 |
| MS.gene70291.t1 | MTR_6g043220 | 41.772 | 158 | 69 | 5 | 17 | 167 | 49 | 190 | 1.13e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70291.t1 | AT4G09830 | 48.588 | 177 | 58 | 6 | 1 | 167 | 38 | 191 | 5.65e-37 | 126 |
| MS.gene70291.t1 | AT5G64780 | 39.568 | 139 | 76 | 4 | 1 | 137 | 38 | 170 | 2.29e-23 | 91.3 |
Find 49 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATATAGTCTCTCACTTGC+AGG | 0.320186 | 4.1:-9217703 | MS.gene70291:intron |
| ACGAATTTGAATCTCTGTTC+TGG | 0.321939 | 4.1:+9215452 | None:intergenic |
| CTGCCCTGTGCTAAATGATA+TGG | 0.346225 | 4.1:+9215544 | None:intergenic |
| GGCTGAAGGCTGCGACGAAT+GGG | 0.351898 | 4.1:+9215565 | None:intergenic |
| AGTTAGTTTGAATTGCTGTT+TGG | 0.364182 | 4.1:+9215701 | None:intergenic |
| TAACTATGATCAAATCAGTA+TGG | 0.368060 | 4.1:+9215376 | None:intergenic |
| GTTAGTTTGAATTGCTGTTT+GGG | 0.374257 | 4.1:+9215702 | None:intergenic |
| GCATTTGGAAGTACTGTTGC+AGG | 0.382751 | 4.1:-9215655 | MS.gene70291:CDS |
| ATTGACTGCCTTGGAGAAAC+TGG | 0.385558 | 4.1:+9215736 | None:intergenic |
| ATACACCATTTCATTGTTAC+GGG | 0.393219 | 4.1:+9215483 | None:intergenic |
| TCCATACCGTCCAATGCATT+TGG | 0.397895 | 4.1:-9215670 | MS.gene70291:CDS |
| GCAGGACAGGGGATACGAAC+TGG | 0.401130 | 4.1:-9215637 | MS.gene70291:CDS |
| GATACACCATTTCATTGTTA+CGG | 0.418071 | 4.1:+9215482 | None:intergenic |
| TGGCTGAAGGCTGCGACGAA+TGG | 0.418206 | 4.1:+9215564 | None:intergenic |
| TCGAGTAATGTCATGTCATC+GGG | 0.423559 | 4.1:-9215514 | MS.gene70291:CDS |
| TGGAAGTACTGTTGCAGGAC+AGG | 0.432969 | 4.1:-9215650 | MS.gene70291:CDS |
| ATGTAGAATGAGCTTGAATA+TGG | 0.441794 | 4.1:-9215772 | MS.gene70291:intron |
| CGGAACCCGTAACAATGAAA+TGG | 0.453370 | 4.1:-9215488 | MS.gene70291:CDS |
| TTCTGTTGAATTGACTGCCT+TGG | 0.458544 | 4.1:+9215727 | None:intergenic |
| TACTGAGTTCTTTACTTGAT+CGG | 0.479541 | 4.1:+9215609 | None:intergenic |
| TACAAGAGCGTGGCGTTCAC+CGG | 0.488524 | 4.1:+9218148 | None:intergenic |
| TCCAAATGCATTGGACGGTA+TGG | 0.490213 | 4.1:+9215669 | None:intergenic |
| GTGGCGTTCACCGGCTTGAA+AGG | 0.497863 | 4.1:+9218157 | None:intergenic |
| GGAAGTACTGTTGCAGGACA+GGG | 0.507937 | 4.1:-9215649 | MS.gene70291:CDS |
| GAATCTCTGTTCTGGCCACT+AGG | 0.523458 | 4.1:+9215460 | None:intergenic |
| TTCGAGTAATGTCATGTCAT+CGG | 0.525561 | 4.1:-9215515 | MS.gene70291:CDS |
| GTCCATGCAGTCACTGGAGT+TGG | 0.532939 | 4.1:+9215429 | None:intergenic |
| TGCATTGGACGGTATGGATG+CGG | 0.534195 | 4.1:+9215675 | None:intergenic |
| CAGCCATATCATTTAGCACA+GGG | 0.558095 | 4.1:-9215547 | MS.gene70291:CDS |
| ATGCATGTCCATGCAGTCAC+TGG | 0.564079 | 4.1:+9215423 | None:intergenic |
| GTCCAACTCCAGTGACTGCA+TGG | 0.568129 | 4.1:-9215431 | MS.gene70291:CDS |
| CAGTATGGAAAATCATGACC+AGG | 0.574411 | 4.1:+9215391 | None:intergenic |
| AACAGTACTTCCAAATGCAT+TGG | 0.577353 | 4.1:+9215660 | None:intergenic |
| TCAGCCATATCATTTAGCAC+AGG | 0.580324 | 4.1:-9215548 | MS.gene70291:CDS |
| GACATGCATGCAGACAGTCC+TGG | 0.588311 | 4.1:-9215409 | MS.gene70291:CDS |
| CAGGACAGGGGATACGAACT+GGG | 0.588579 | 4.1:-9215636 | MS.gene70291:CDS |
| AATGTCATGTCATCGGGGAA+CGG | 0.595236 | 4.1:-9215508 | MS.gene70291:CDS |
| ATTCTTAGACAACAACAAGA+AGG | 0.606741 | 4.1:-9217744 | MS.gene70291:CDS |
| TGCAGGAGAAAATGTATCAG+TGG | 0.615078 | 4.1:-9217767 | MS.gene70291:intron |
| TGAGCTTGAATATGGAGCAG+AGG | 0.628224 | 4.1:-9215764 | MS.gene70291:CDS |
| GCTGAAGGCTGCGACGAATG+GGG | 0.632700 | 4.1:+9215566 | None:intergenic |
| AGGAATCACCAGTTTCTCCA+AGG | 0.640475 | 4.1:-9215744 | MS.gene70291:CDS |
| GAAGTACTGTTGCAGGACAG+GGG | 0.643448 | 4.1:-9215648 | MS.gene70291:CDS |
| GTGCTAAATGATATGGCTGA+AGG | 0.646201 | 4.1:+9215551 | None:intergenic |
| AATGAAATGGTGTATCCTAG+TGG | 0.663062 | 4.1:-9215475 | MS.gene70291:CDS |
| GTACTTCCAAATGCATTGGA+CGG | 0.665522 | 4.1:+9215664 | None:intergenic |
| GAAGGAAGCATACAAGAGCG+TGG | 0.686735 | 4.1:+9218138 | None:intergenic |
| GATGACATGACATTACTCGA+AGG | 0.723139 | 4.1:+9215517 | None:intergenic |
| CGAGTAATGTCATGTCATCG+GGG | 0.731834 | 4.1:-9215513 | MS.gene70291:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTAAAAGAAAAGAA+TGG | + | chr4.1:9215535-9215554 | None:intergenic | 10.0% |
| !! | AATAATTTGAAAATAAGAAA+GGG | + | chr4.1:9215473-9215492 | None:intergenic | 10.0% |
| !! | AATATTATAAACAAAATTAG+GGG | + | chr4.1:9215705-9215724 | None:intergenic | 10.0% |
| !! | CAAATATTATAAACAAAATT+AGG | + | chr4.1:9215707-9215726 | None:intergenic | 10.0% |
| !! | TAATAATTTGAAAATAAGAA+AGG | + | chr4.1:9215474-9215493 | None:intergenic | 10.0% |
| !! | ATAATTTGAAAATAAGAAAG+GGG | + | chr4.1:9215472-9215491 | None:intergenic | 15.0% |
| !! | GTATATTAAAAGAATAATCT+TGG | - | chr4.1:9216937-9216956 | MS.gene70291:intron | 15.0% |
| !! | TGATTTAATATAAAATGCTT+TGG | - | chr4.1:9215762-9215781 | MS.gene70291:CDS | 15.0% |
| !!! | AATAAGATATTTTATAACAC+AGG | - | chr4.1:9216297-9216316 | MS.gene70291:intron | 15.0% |
| !!! | ATTTTCATTATGAGTTTTAT+AGG | - | chr4.1:9217276-9217295 | MS.gene70291:intron | 15.0% |
| !!! | TAAGCTTATATAATTTTATG+AGG | + | chr4.1:9217053-9217072 | None:intergenic | 15.0% |
| !! | ACTAAATTGTTTATTCAAAC+AGG | + | chr4.1:9215976-9215995 | None:intergenic | 20.0% |
| !! | CTAAATTGTTTATTCAAACA+GGG | + | chr4.1:9215975-9215994 | None:intergenic | 20.0% |
| !! | TAATATTTGATGTTACTCAA+TGG | - | chr4.1:9215718-9215737 | MS.gene70291:CDS | 20.0% |
| !!! | AGTTAAATGGATAAACTTTT+CGG | + | chr4.1:9217451-9217470 | None:intergenic | 20.0% |
| !!! | CACTCAAAATCATTTTTTTA+CGG | + | chr4.1:9216014-9216033 | None:intergenic | 20.0% |
| ! | AAATAATACAGACAGGAAAA+TGG | + | chr4.1:9216776-9216795 | None:intergenic | 25.0% |
| ! | ATTCAATGGAAAAACTACTT+AGG | - | chr4.1:9215948-9215967 | MS.gene70291:intron | 25.0% |
| ! | CAAAATCAATTATACTCTAG+AGG | - | chr4.1:9216154-9216173 | MS.gene70291:intron | 25.0% |
| ! | CATAAGTGCTTATACTATAA+GGG | + | chr4.1:9216277-9216296 | None:intergenic | 25.0% |
| ! | GTTGTTAGTTAAAATACTCA+TGG | - | chr4.1:9217379-9217398 | MS.gene70291:intron | 25.0% |
| ! | TAATAGATTCACAATAAGTC+CGG | - | chr4.1:9217509-9217528 | MS.gene70291:intron | 25.0% |
| ! | TAGTAAAGTCACAGATTAAT+GGG | + | chr4.1:9215642-9215661 | None:intergenic | 25.0% |
| ! | TATTTGATATCTTGATGTGA+AGG | - | chr4.1:9216044-9216063 | MS.gene70291:intron | 25.0% |
| ! | TCATAAGTGCTTATACTATA+AGG | + | chr4.1:9216278-9216297 | None:intergenic | 25.0% |
| ! | TCCTTACGATTTATAAGTTA+AGG | + | chr4.1:9217174-9217193 | None:intergenic | 25.0% |
| ! | TTAGTAAAGTCACAGATTAA+TGG | + | chr4.1:9215643-9215662 | None:intergenic | 25.0% |
| ! | TTATACAATGACTAACATTG+TGG | + | chr4.1:9217492-9217511 | None:intergenic | 25.0% |
| ! | TTATTTATTGCAGAAGAGTT+AGG | - | chr4.1:9216790-9216809 | MS.gene70291:intron | 25.0% |
| ! | TTCAATGGAAAAACTACTTA+GGG | - | chr4.1:9215949-9215968 | MS.gene70291:intron | 25.0% |
| ! | TTTATCCATTTAACTCTAAG+AGG | - | chr4.1:9217456-9217475 | MS.gene70291:intron | 25.0% |
| ! | TTTATTCTCTATGCATTGTT+GGG | - | chr4.1:9215892-9215911 | MS.gene70291:intron | 25.0% |
| !! | CTTCAAGTAGAAACAATTTT+GGG | - | chr4.1:9216129-9216148 | MS.gene70291:intron | 25.0% |
| !! | TTCAAGTAGAAACAATTTTG+GGG | - | chr4.1:9216130-9216149 | MS.gene70291:intron | 25.0% |
| !! | TTTAGAAGCTAATTCAAGTT+GGG | - | chr4.1:9217148-9217167 | MS.gene70291:intron | 25.0% |
| !! | TTTTATTCTCTATGCATTGT+TGG | - | chr4.1:9215891-9215910 | MS.gene70291:intron | 25.0% |
| !! | TTTTTCCATTGAATGAGTAA+TGG | + | chr4.1:9215942-9215961 | None:intergenic | 25.0% |
| !!! | ATCTTTAAGCTTTTGGTTTT+TGG | - | chr4.1:9216586-9216605 | MS.gene70291:intron | 25.0% |
| AAACTATCCTGAAAAACTCA+TGG | - | chr4.1:9216368-9216387 | MS.gene70291:intron | 30.0% | |
| AACTGTAGGACATAATATGT+GGG | + | chr4.1:9217682-9217701 | None:intergenic | 30.0% | |
| ACACACCTATAAAACTCATA+AGG | + | chr4.1:9217200-9217219 | None:intergenic | 30.0% | |
| ACACATACTGATAATAAGCA+AGG | + | chr4.1:9217425-9217444 | None:intergenic | 30.0% | |
| ACATAATATGTGGGAAACTA+CGG | + | chr4.1:9217673-9217692 | None:intergenic | 30.0% | |
| AGAGTTGAATTTGACATGTT+TGG | + | chr4.1:9216182-9216201 | None:intergenic | 30.0% | |
| AGCATTAGAGCAAAATCTTA+TGG | + | chr4.1:9217574-9217593 | None:intergenic | 30.0% | |
| ATACACCATTTCATTGTTAC+GGG | + | chr4.1:9218086-9218105 | None:intergenic | 30.0% | |
| ATCAACCTCTTAGAGTTAAA+TGG | + | chr4.1:9217464-9217483 | None:intergenic | 30.0% | |
| ATGTAGAATGAGCTTGAATA+TGG | - | chr4.1:9217794-9217813 | MS.gene70291:intron | 30.0% | |
| ATTCTTAGACAACAACAAGA+AGG | - | chr4.1:9215822-9215841 | MS.gene70291:intron | 30.0% | |
| CTGCAATAAATAATACAGAC+AGG | + | chr4.1:9216783-9216802 | None:intergenic | 30.0% | |
| GATACACCATTTCATTGTTA+CGG | + | chr4.1:9218087-9218106 | None:intergenic | 30.0% | |
| GCCTTAACTTATAAATCGTA+AGG | - | chr4.1:9217170-9217189 | MS.gene70291:intron | 30.0% | |
| GCTACAAATAAGTGTATGTT+TGG | + | chr4.1:9216249-9216268 | None:intergenic | 30.0% | |
| TAAAAGAAGAAGAAGAAGGA+AGG | + | chr4.1:9215449-9215468 | None:intergenic | 30.0% | |
| TAAAATGCAAGAACGAAATC+TGG | + | chr4.1:9215605-9215624 | None:intergenic | 30.0% | |
| TAACTGTAGGACATAATATG+TGG | + | chr4.1:9217683-9217702 | None:intergenic | 30.0% | |
| TAAGCATTTGTGACATTGTT+CGG | + | chr4.1:9216448-9216467 | None:intergenic | 30.0% | |
| TACTGAGTTCTTTACTTGAT+CGG | + | chr4.1:9217960-9217979 | None:intergenic | 30.0% | |
| TATAGTTCAACCATCAAGAT+CGG | + | chr4.1:9217607-9217626 | None:intergenic | 30.0% | |
| TATCATTGCCTATAGCTTAA+AGG | - | chr4.1:9216515-9216534 | MS.gene70291:intron | 30.0% | |
| TGTGCAATAATGTTAACTGT+AGG | + | chr4.1:9217696-9217715 | None:intergenic | 30.0% | |
| TTATAAACAAAATTAGGGGC+TGG | + | chr4.1:9215701-9215720 | None:intergenic | 30.0% | |
| ! | AGATTTCGTTCTTGCATTTT+AGG | - | chr4.1:9215604-9215623 | MS.gene70291:CDS | 30.0% |
| ! | AGTGTGAAACTGTTATTTAG+TGG | - | chr4.1:9216558-9216577 | MS.gene70291:intron | 30.0% |
| ! | AGTTAGTTTGAATTGCTGTT+TGG | + | chr4.1:9217868-9217887 | None:intergenic | 30.0% |
| ! | CAAAATTGATTCAATAGGTG+TGG | + | chr4.1:9216208-9216227 | None:intergenic | 30.0% |
| ! | CCTTTTATTGAATTTTGCCT+GGG | - | chr4.1:9217532-9217551 | MS.gene70291:intron | 30.0% |
| ! | CTTATTTCCATGAGTTTTTC+AGG | + | chr4.1:9216378-9216397 | None:intergenic | 30.0% |
| ! | CTTTAGAAGCTAATTCAAGT+TGG | - | chr4.1:9217147-9217166 | MS.gene70291:intron | 30.0% |
| ! | GATTTCGTTCTTGCATTTTA+GGG | - | chr4.1:9215605-9215624 | MS.gene70291:CDS | 30.0% |
| ! | GCTTCAAGTAGAAACAATTT+TGG | - | chr4.1:9216128-9216147 | MS.gene70291:intron | 30.0% |
| ! | GGACATTATCTTTAAGCTTT+TGG | - | chr4.1:9216579-9216598 | MS.gene70291:intron | 30.0% |
| ! | GGTTTATCAACCTTTTACTT+GGG | + | chr4.1:9216670-9216689 | None:intergenic | 30.0% |
| ! | TCAAGTAGAAACAATTTTGG+GGG | - | chr4.1:9216131-9216150 | MS.gene70291:intron | 30.0% |
| !! | GAAGTCCTTATGAGTTTTAT+AGG | - | chr4.1:9217192-9217211 | MS.gene70291:intron | 30.0% |
| !! | GTTAGTTTGAATTGCTGTTT+GGG | + | chr4.1:9217867-9217886 | None:intergenic | 30.0% |
| !!! | TTTTGGTGTTAGATTAGTCA+TGG | - | chr4.1:9216729-9216748 | MS.gene70291:intron | 30.0% |
| AACAGTACTTCCAAATGCAT+TGG | + | chr4.1:9217909-9217928 | None:intergenic | 35.0% | |
| AAGCATTTGTGACATTGTTC+GGG | + | chr4.1:9216447-9216466 | None:intergenic | 35.0% | |
| AATGAAATGGTGTATCCTAG+TGG | - | chr4.1:9218091-9218110 | MS.gene70291:intron | 35.0% | |
| ACGAATTTGAATCTCTGTTC+TGG | + | chr4.1:9218117-9218136 | None:intergenic | 35.0% | |
| AGTTTCACACTCAAAGCAAT+CGG | + | chr4.1:9216549-9216568 | None:intergenic | 35.0% | |
| CAAAGTGACCTTTAAGCTAT+AGG | + | chr4.1:9216526-9216545 | None:intergenic | 35.0% | |
| CCAAAGGTTATATCTACATC+CGG | + | chr4.1:9217762-9217781 | None:intergenic | 35.0% | |
| CCCAGGCAAAATTCAATAAA+AGG | + | chr4.1:9217535-9217554 | None:intergenic | 35.0% | |
| CTGAACCATTACTCATTCAA+TGG | - | chr4.1:9215934-9215953 | MS.gene70291:intron | 35.0% | |
| GGCAAAATTCAATAAAAGGC+CGG | + | chr4.1:9217531-9217550 | None:intergenic | 35.0% | |
| GGCACAAGTGATAGATATTT+GGG | + | chr4.1:9216691-9216710 | None:intergenic | 35.0% | |
| TATATCTACATCCGGATATC+AGG | + | chr4.1:9217754-9217773 | None:intergenic | 35.0% | |
| TGGCACAAGTGATAGATATT+TGG | + | chr4.1:9216692-9216711 | None:intergenic | 35.0% | |
| TTCGAGTAATGTCATGTCAT+CGG | - | chr4.1:9218051-9218070 | MS.gene70291:intron | 35.0% | |
| ! | ACTCGTTTGAGTTTATCTAC+TGG | + | chr4.1:9216473-9216492 | None:intergenic | 35.0% |
| ! | ATGCATTGTTGGGTTCTTTT+TGG | - | chr4.1:9215902-9215921 | MS.gene70291:intron | 35.0% |
| ! | GCCTTTTATTGAATTTTGCC+TGG | - | chr4.1:9217531-9217550 | MS.gene70291:intron | 35.0% |
| ! | GGAGGCAAAATTGATTCAAT+AGG | + | chr4.1:9216213-9216232 | None:intergenic | 35.0% |
| ! | GGGTTTATCAACCTTTTACT+TGG | + | chr4.1:9216671-9216690 | None:intergenic | 35.0% |
| ! | GTTCTAACGTAAGTTGAAAC+TGG | - | chr4.1:9216985-9217004 | MS.gene70291:intron | 35.0% |
| ! | TGATACATTTTCTCCTGCAA+TGG | + | chr4.1:9215798-9215817 | None:intergenic | 35.0% |
| ! | TGCATTGTTGGGTTCTTTTT+GGG | - | chr4.1:9215903-9215922 | MS.gene70291:intron | 35.0% |
| ! | TGGTCTAGCTTCTAACTAAT+AGG | - | chr4.1:9216868-9216887 | MS.gene70291:intron | 35.0% |
| ! | TTATTGAATTTTGCCTGGGT+GGG | - | chr4.1:9217536-9217555 | MS.gene70291:intron | 35.0% |
| ! | TTTATTGAATTTTGCCTGGG+TGG | - | chr4.1:9217535-9217554 | MS.gene70291:intron | 35.0% |
| !! | ACATGCTCATGAGCTATTTT+CGG | + | chr4.1:9216401-9216420 | None:intergenic | 35.0% |
| !! | CTTCTAAAGCTCAAACACAT+GGG | + | chr4.1:9217136-9217155 | None:intergenic | 35.0% |
| !! | TGGTGTTTTTAATCCATTGC+AGG | - | chr4.1:9215782-9215801 | MS.gene70291:intron | 35.0% |
| !! | TGTATGTTTGGTTCCACTTT+TGG | + | chr4.1:9216237-9216256 | None:intergenic | 35.0% |
| !!! | TTTTGGTTTTTGGTAAGCCA+AGG | - | chr4.1:9216596-9216615 | MS.gene70291:intron | 35.0% |
| ACATGCAAACACATAGCCAA+AGG | + | chr4.1:9217778-9217797 | None:intergenic | 40.0% | |
| AGAGTTAGGTCCTATGTGAA+AGG | - | chr4.1:9216804-9216823 | MS.gene70291:intron | 40.0% | |
| AGTTAGAAGCTAGACCAAAC+TGG | + | chr4.1:9216865-9216884 | None:intergenic | 40.0% | |
| ATGTATCAGTCCGATCTTGA+TGG | - | chr4.1:9217594-9217613 | MS.gene70291:intron | 40.0% | |
| CAAAAACTCTCCTTTCAAGC+CGG | - | chr4.1:9215399-9215418 | MS.gene70291:CDS | 40.0% | |
| CAGCCATATCATTTAGCACA+GGG | - | chr4.1:9218019-9218038 | MS.gene70291:intron | 40.0% | |
| CAGTATGGAAAATCATGACC+AGG | + | chr4.1:9218178-9218197 | None:intergenic | 40.0% | |
| CCGGATGTAGATATAACCTT+TGG | - | chr4.1:9217759-9217778 | MS.gene70291:CDS | 40.0% | |
| CTATAGGCAATGATAGACCT+GGG | + | chr4.1:9216510-9216529 | None:intergenic | 40.0% | |
| GAGTTAGGTCCTATGTGAAA+GGG | - | chr4.1:9216805-9216824 | MS.gene70291:intron | 40.0% | |
| GATGACATGACATTACTCGA+AGG | + | chr4.1:9218052-9218071 | None:intergenic | 40.0% | |
| GGATCAAACTCCCAAGTAAA+AGG | - | chr4.1:9216657-9216676 | MS.gene70291:intron | 40.0% | |
| GGGGTAAAAGAAGAAGAAGA+AGG | + | chr4.1:9215453-9215472 | None:intergenic | 40.0% | |
| GTACTTCCAAATGCATTGGA+CGG | + | chr4.1:9217905-9217924 | None:intergenic | 40.0% | |
| GTGCTAAATGATATGGCTGA+AGG | + | chr4.1:9218018-9218037 | None:intergenic | 40.0% | |
| TATAGGCAATGATAGACCTG+GGG | + | chr4.1:9216509-9216528 | None:intergenic | 40.0% | |
| TCAGCCATATCATTTAGCAC+AGG | - | chr4.1:9218018-9218037 | MS.gene70291:intron | 40.0% | |
| TCGAGTAATGTCATGTCATC+GGG | - | chr4.1:9218052-9218071 | MS.gene70291:intron | 40.0% | |
| TGATATAGTCTCTCACTTGC+AGG | - | chr4.1:9215863-9215882 | MS.gene70291:intron | 40.0% | |
| TGCAGGAGAAAATGTATCAG+TGG | - | chr4.1:9215799-9215818 | MS.gene70291:intron | 40.0% | |
| TTCGAATGTCTCCTGATATC+CGG | - | chr4.1:9217740-9217759 | MS.gene70291:CDS | 40.0% | |
| TTCTGTTGAATTGACTGCCT+TGG | + | chr4.1:9217842-9217861 | None:intergenic | 40.0% | |
| ! | AATTTTGCCTCCTCCAAAAG+TGG | - | chr4.1:9216221-9216240 | MS.gene70291:intron | 40.0% |
| ! | ACAACTTTTCTCGCTTCACT+TGG | - | chr4.1:9217646-9217665 | MS.gene70291:intron | 40.0% |
| ! | CACCAAAAGTATAACCGACA+CGG | + | chr4.1:9216717-9216736 | None:intergenic | 40.0% |
| !! | ATGTTTGGTTCCACTTTTGG+AGG | + | chr4.1:9216234-9216253 | None:intergenic | 40.0% |
| !! | GCTTCTAAAGCTCAAACACA+TGG | + | chr4.1:9217137-9217156 | None:intergenic | 40.0% |
| AAAGTATAACCGACACGGTG+TGG | + | chr4.1:9216712-9216731 | None:intergenic | 45.0% | |
| AATGTCATGTCATCGGGGAA+CGG | - | chr4.1:9218058-9218077 | MS.gene70291:intron | 45.0% | |
| AGGAATCACCAGTTTCTCCA+AGG | - | chr4.1:9217822-9217841 | MS.gene70291:intron | 45.0% | |
| AGTGCAGCTTAAGTCCAGTT+TGG | - | chr4.1:9216848-9216867 | MS.gene70291:intron | 45.0% | |
| ATTGACTGCCTTGGAGAAAC+TGG | + | chr4.1:9217833-9217852 | None:intergenic | 45.0% | |
| CAAAATTAGGGGCTGGAATG+TGG | + | chr4.1:9215694-9215713 | None:intergenic | 45.0% | |
| CGAGTAATGTCATGTCATCG+GGG | - | chr4.1:9218053-9218072 | MS.gene70291:intron | 45.0% | |
| CGGAACCCGTAACAATGAAA+TGG | - | chr4.1:9218078-9218097 | MS.gene70291:intron | 45.0% | |
| CTGCCCTGTGCTAAATGATA+TGG | + | chr4.1:9218025-9218044 | None:intergenic | 45.0% | |
| GCTATAGGCAATGATAGACC+TGG | + | chr4.1:9216511-9216530 | None:intergenic | 45.0% | |
| TAGGTCCTATGTGAAAGGGA+GGG | - | chr4.1:9216809-9216828 | MS.gene70291:intron | 45.0% | |
| TCAAACGAGTCAGTCCAAAC+AGG | - | chr4.1:9216483-9216502 | MS.gene70291:intron | 45.0% | |
| TCCAAATGCATTGGACGGTA+TGG | + | chr4.1:9217900-9217919 | None:intergenic | 45.0% | |
| TCCATACCGTCCAATGCATT+TGG | - | chr4.1:9217896-9217915 | MS.gene70291:intron | 45.0% | |
| TGAGCTTGAATATGGAGCAG+AGG | - | chr4.1:9217802-9217821 | MS.gene70291:intron | 45.0% | |
| TTAGGTCCTATGTGAAAGGG+AGG | - | chr4.1:9216808-9216827 | MS.gene70291:intron | 45.0% | |
| ! | TTGCCTGGGTGGGATTTTTA+TGG | - | chr4.1:9217546-9217565 | MS.gene70291:intron | 45.0% |
| !! | GCATTTGGAAGTACTGTTGC+AGG | - | chr4.1:9217911-9217930 | MS.gene70291:intron | 45.0% |
| !! | TTTGGTTCCACTTTTGGAGG+AGG | + | chr4.1:9216231-9216250 | None:intergenic | 45.0% |
| !!! | CACCGTGTCGGTTATACTTT+TGG | - | chr4.1:9216712-9216731 | MS.gene70291:intron | 45.0% |
| !! | AAATATTATAAACAAAATTA+GGG | + | chr4.1:9215706-9215725 | None:intergenic | 5.0% |
| ACTTGGGAGTTTGATCCCGA+GGG | + | chr4.1:9216654-9216673 | None:intergenic | 50.0% | |
| AGGTCCTATGTGAAAGGGAG+GGG | - | chr4.1:9216810-9216829 | MS.gene70291:intron | 50.0% | |
| ATGCATGTCCATGCAGTCAC+TGG | + | chr4.1:9218146-9218165 | None:intergenic | 50.0% | |
| GAATCTCTGTTCTGGCCACT+AGG | + | chr4.1:9218109-9218128 | None:intergenic | 50.0% | |
| GTGCCATAAAAATCCCACCC+AGG | + | chr4.1:9217552-9217571 | None:intergenic | 50.0% | |
| TACTTGGGAGTTTGATCCCG+AGG | + | chr4.1:9216655-9216674 | None:intergenic | 50.0% | |
| TGCATTGGACGGTATGGATG+CGG | + | chr4.1:9217894-9217913 | None:intergenic | 50.0% | |
| ! | GAAGGAAGCATACAAGAGCG+TGG | + | chr4.1:9215431-9215450 | None:intergenic | 50.0% |
| !! | GAAGTACTGTTGCAGGACAG+GGG | - | chr4.1:9217918-9217937 | MS.gene70291:intron | 50.0% |
| !! | GGAAGTACTGTTGCAGGACA+GGG | - | chr4.1:9217917-9217936 | MS.gene70291:intron | 50.0% |
| !! | TGGAAGTACTGTTGCAGGAC+AGG | - | chr4.1:9217916-9217935 | MS.gene70291:intron | 50.0% |
| AAGCCCCCTCCCTTTCACAT+AGG | + | chr4.1:9216817-9216836 | None:intergenic | 55.0% | |
| CAGGACAGGGGATACGAACT+GGG | - | chr4.1:9217930-9217949 | MS.gene70291:intron | 55.0% | |
| GACATGCATGCAGACAGTCC+TGG | - | chr4.1:9218157-9218176 | MS.gene70291:CDS | 55.0% | |
| GCTGGGGAGATTAATCCCTC+GGG | - | chr4.1:9216636-9216655 | MS.gene70291:intron | 55.0% | |
| GGCTGGGGAGATTAATCCCT+CGG | - | chr4.1:9216635-9216654 | MS.gene70291:intron | 55.0% | |
| GGTCCTATGTGAAAGGGAGG+GGG | - | chr4.1:9216811-9216830 | MS.gene70291:intron | 55.0% | |
| GTCCAACTCCAGTGACTGCA+TGG | - | chr4.1:9218135-9218154 | MS.gene70291:intron | 55.0% | |
| GTCCATGCAGTCACTGGAGT+TGG | + | chr4.1:9218140-9218159 | None:intergenic | 55.0% | |
| TATGTGAAAGGGAGGGGGCT+TGG | - | chr4.1:9216816-9216835 | MS.gene70291:intron | 55.0% | |
| TCACTTGTGCCACACCGTGT+CGG | - | chr4.1:9216700-9216719 | MS.gene70291:intron | 55.0% | |
| TGATAGACCTGGGGCCTGTT+TGG | + | chr4.1:9216500-9216519 | None:intergenic | 55.0% | |
| ! | CAAGGTATCATCCCCTCGCA+CGG | - | chr4.1:9216614-9216633 | MS.gene70291:intron | 55.0% |
| ! | TACAAGAGCGTGGCGTTCAC+CGG | + | chr4.1:9215421-9215440 | None:intergenic | 55.0% |
| AGTCAGTCCAAACAGGCCCC+AGG | - | chr4.1:9216490-9216509 | MS.gene70291:intron | 60.0% | |
| CGTGCGAGGGGATGATACCT+TGG | + | chr4.1:9216616-9216635 | None:intergenic | 60.0% | |
| GCAGGACAGGGGATACGAAC+TGG | - | chr4.1:9217929-9217948 | MS.gene70291:intron | 60.0% | |
| GCTGAAGGCTGCGACGAATG+GGG | + | chr4.1:9218003-9218022 | None:intergenic | 60.0% | |
| GGCTGAAGGCTGCGACGAAT+GGG | + | chr4.1:9218004-9218023 | None:intergenic | 60.0% | |
| TAATCTCCCCAGCCGTGCGA+GGG | + | chr4.1:9216629-9216648 | None:intergenic | 60.0% | |
| TATCATCCCCTCGCACGGCT+GGG | - | chr4.1:9216619-9216638 | MS.gene70291:intron | 60.0% | |
| TGGCTGAAGGCTGCGACGAA+TGG | + | chr4.1:9218005-9218024 | None:intergenic | 60.0% | |
| TTAATCTCCCCAGCCGTGCG+AGG | + | chr4.1:9216630-9216649 | None:intergenic | 60.0% | |
| !! | GTGGCGTTCACCGGCTTGAA+AGG | + | chr4.1:9215412-9215431 | None:intergenic | 60.0% |
| AATCTCCCCAGCCGTGCGAG+GGG | + | chr4.1:9216628-9216647 | None:intergenic | 65.0% | |
| ATCATCCCCTCGCACGGCTG+GGG | - | chr4.1:9216620-9216639 | MS.gene70291:intron | 65.0% | |
| GTATCATCCCCTCGCACGGC+TGG | - | chr4.1:9216618-9216637 | MS.gene70291:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 9215390 | 9218198 | 9215390 | ID=MS.gene70291 |
| chr4.1 | mRNA | 9215390 | 9218198 | 9215390 | ID=MS.gene70291.t1;Parent=MS.gene70291 |
| chr4.1 | exon | 9218151 | 9218198 | 9218151 | ID=MS.gene70291.t1.exon1;Parent=MS.gene70291.t1 |
| chr4.1 | CDS | 9218151 | 9218198 | 9218151 | ID=cds.MS.gene70291.t1;Parent=MS.gene70291.t1 |
| chr4.1 | exon | 9217704 | 9217784 | 9217704 | ID=MS.gene70291.t1.exon2;Parent=MS.gene70291.t1 |
| chr4.1 | CDS | 9217704 | 9217784 | 9217704 | ID=cds.MS.gene70291.t1;Parent=MS.gene70291.t1 |
| chr4.1 | exon | 9215390 | 9215788 | 9215390 | ID=MS.gene70291.t1.exon3;Parent=MS.gene70291.t1 |
| chr4.1 | CDS | 9215390 | 9215788 | 9215390 | ID=cds.MS.gene70291.t1;Parent=MS.gene70291.t1 |
| Gene Sequence |
| Protein sequence |
