Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71426.t1 | XP_004495357.1 | 81.5 | 685 | 126 | 1 | 1 | 685 | 60 | 743 | 0.00E+00 | 1150.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71426.t1 | B5WWZ8 | 65.6 | 689 | 233 | 2 | 1 | 686 | 59 | 746 | 4.3e-273 | 941.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71426.t1 | A0A1S2XW11 | 81.5 | 685 | 126 | 1 | 1 | 685 | 60 | 743 | 0.0e+00 | 1150.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71426 | MS.gene056569 | PPI |
| MS.gene71426 | MS.gene82452 | PPI |
| MS.gene72745 | MS.gene71426 | PPI |
| MS.gene71426 | MS.gene72746 | PPI |
| MS.gene71426 | MS.gene82942 | PPI |
| MS.gene71426 | MS.gene067993 | PPI |
| MS.gene83396 | MS.gene71426 | PPI |
| MS.gene82943 | MS.gene71426 | PPI |
| MS.gene71426 | MS.gene86456 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71426.t1 | MTR_1g075650 | 88.542 | 576 | 24 | 3 | 110 | 685 | 3 | 536 | 0.0 | 1030 |
| MS.gene71426.t1 | MTR_4g080823 | 65.036 | 695 | 233 | 6 | 1 | 686 | 66 | 759 | 0.0 | 912 |
| MS.gene71426.t1 | MTR_4g080890 | 65.468 | 695 | 230 | 6 | 1 | 686 | 57 | 750 | 0.0 | 907 |
| MS.gene71426.t1 | MTR_7g097210 | 58.163 | 686 | 279 | 6 | 4 | 686 | 56 | 736 | 0.0 | 797 |
| MS.gene71426.t1 | MTR_0651s0010 | 65.378 | 595 | 197 | 5 | 1 | 587 | 57 | 650 | 0.0 | 770 |
| MS.gene71426.t1 | MTR_7g097210 | 60.175 | 570 | 221 | 5 | 118 | 686 | 2 | 566 | 0.0 | 681 |
| MS.gene71426.t1 | MTR_5g025650 | 43.604 | 727 | 357 | 12 | 4 | 686 | 110 | 827 | 0.0 | 564 |
| MS.gene71426.t1 | MTR_8g072210 | 43.292 | 723 | 361 | 12 | 4 | 686 | 95 | 808 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71426.t1 | AT3G23410 | 60.320 | 688 | 262 | 6 | 1 | 681 | 54 | 737 | 0.0 | 836 |
| MS.gene71426.t1 | AT3G23410 | 61.161 | 672 | 250 | 6 | 17 | 681 | 2 | 669 | 0.0 | 827 |
| MS.gene71426.t1 | AT4G28570 | 55.409 | 684 | 296 | 5 | 4 | 680 | 57 | 738 | 0.0 | 753 |
| MS.gene71426.t1 | AT4G28570 | 55.409 | 684 | 296 | 5 | 4 | 680 | 57 | 738 | 0.0 | 753 |
| MS.gene71426.t1 | AT1G03990 | 51.699 | 677 | 319 | 5 | 15 | 686 | 81 | 754 | 0.0 | 718 |
| MS.gene71426.t1 | AT4G19380 | 44.006 | 709 | 357 | 13 | 4 | 686 | 72 | 766 | 0.0 | 557 |
| MS.gene71426.t1 | AT4G19380 | 44.006 | 709 | 357 | 13 | 4 | 686 | 30 | 724 | 0.0 | 556 |
Find 146 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAATTTCAAGACCTTTAT+TGG | 0.059318 | 1.3:+54187801 | None:intergenic |
| CAAAGCTGAAAAGTTTATTT+TGG | 0.172640 | 1.3:-54187164 | MS.gene71426:CDS |
| TCATTTCATCACAATTATTC+AGG | 0.270130 | 1.3:-54186714 | MS.gene71426:CDS |
| AATCCACTAGAGATCATTAA+AGG | 0.281307 | 1.3:+54187004 | None:intergenic |
| CAGTTCTTCTGGAATGCTTC+TGG | 0.286611 | 1.3:-54190908 | MS.gene71426:CDS |
| TACTGTGGTTCTTGTAACTA+TGG | 0.298645 | 1.3:-54187271 | MS.gene71426:CDS |
| ACATGATGAGATTGTTGCTT+TGG | 0.307255 | 1.3:+54187045 | None:intergenic |
| ACAAGGATATGCAGTTCTTC+TGG | 0.311407 | 1.3:-54190919 | None:intergenic |
| CTAAGGAGTATAACTACTTC+TGG | 0.331620 | 1.3:+54188288 | None:intergenic |
| TGCAACTCCTCCACCGCAAC+CGG | 0.337562 | 1.3:+54187723 | None:intergenic |
| GCTGCTGTTCTTGCAAGTTC+AGG | 0.339077 | 1.3:-54187700 | MS.gene71426:CDS |
| AAAGAAATGTTTAGGAGTTA+TGG | 0.342167 | 1.3:-54187113 | MS.gene71426:CDS |
| CAAAGTACTTGTTCTTGAAA+AGG | 0.354993 | 1.3:-54187674 | MS.gene71426:CDS |
| TACTCCTTAGAGTGATTCTA+TGG | 0.357436 | 1.3:-54188275 | MS.gene71426:CDS |
| GTCGGTTCCGGTTGCGGTGG+AGG | 0.360501 | 1.3:-54187730 | MS.gene71426:CDS |
| TAAAGAAATGCAAGTCTAAT+AGG | 0.370907 | 1.3:+54188105 | None:intergenic |
| AGTTTGTTTCCAACTGCAAT+AGG | 0.371971 | 1.3:-54186317 | MS.gene71426:CDS |
| ACCGTGATTCCTTGGGAATC+CGG | 0.373513 | 1.3:-54186779 | MS.gene71426:CDS |
| TGTAACTATGGTTGTAGAAA+AGG | 0.378475 | 1.3:-54187259 | MS.gene71426:CDS |
| CCACATCACATTTCACTTTG+AGG | 0.379505 | 1.3:+54187758 | None:intergenic |
| TCGCAATCTCTTTCCAATAA+AGG | 0.381889 | 1.3:-54187814 | MS.gene71426:CDS |
| GAAGGCGCGGTTGATGAAAA+TGG | 0.395806 | 1.3:-54186380 | MS.gene71426:CDS |
| GTGAGAAGAAAGAAATGTTT+AGG | 0.399497 | 1.3:-54187121 | MS.gene71426:CDS |
| CCTTATTGTATTCTTCTCTC+AGG | 0.411125 | 1.3:-54188067 | MS.gene71426:intron |
| AAAGTACTTGTTCTTGAAAA+GGG | 0.411239 | 1.3:-54187673 | MS.gene71426:CDS |
| ATGGATACTATCAACAAAGT+TGG | 0.415448 | 1.3:-54188256 | MS.gene71426:CDS |
| TTTCAAGAACAAGTACTTTG+AGG | 0.415676 | 1.3:+54187677 | None:intergenic |
| ATTGAATAAGTTCGTGGAAT+CGG | 0.417093 | 1.3:-54186501 | MS.gene71426:CDS |
| CAATGTCACATCAAGAAACT+TGG | 0.418548 | 1.3:-54186460 | MS.gene71426:CDS |
| AACCAATGGCTTCCCATGCT+TGG | 0.429321 | 1.3:+54187935 | None:intergenic |
| CCTGAGAGAAGAATACAATA+AGG | 0.430373 | 1.3:+54188067 | None:intergenic |
| AAAAGAGAGGCCTCTTGAAA+AGG | 0.435971 | 1.3:-54187875 | MS.gene71426:CDS |
| TCTTTCTTTGAAGTCGAATC+CGG | 0.438032 | 1.3:+54186760 | None:intergenic |
| CTCTCTGTCTGACTATGAAA+TGG | 0.439575 | 1.3:-54188212 | MS.gene71426:CDS |
| TGATGCTCTGATGAATTTCT+CGG | 0.439798 | 1.3:+54187295 | None:intergenic |
| TTGAATGAGCTTTATGAACT+AGG | 0.441032 | 1.3:-54187604 | MS.gene71426:CDS |
| GCCTCTTGAAAAGGGAATAG+TGG | 0.441814 | 1.3:-54187866 | MS.gene71426:CDS |
| CTATCCTACAGCTCCCCATC+TGG | 0.444350 | 1.3:+54186417 | None:intergenic |
| CGAAAAGGTTGTAACGAACT+TGG | 0.445062 | 1.3:-54187337 | MS.gene71426:CDS |
| AATAGACTGAATAGTTATCA+TGG | 0.450012 | 1.3:+54186286 | None:intergenic |
| GTATCCATAGAATCACTCTA+AGG | 0.453819 | 1.3:+54188271 | None:intergenic |
| GTGGTGGTTCCGCTATAAAT+TGG | 0.454209 | 1.3:-54187525 | MS.gene71426:CDS |
| TTGTAGTGGAACTAATGAAA+TGG | 0.455269 | 1.3:-54186525 | MS.gene71426:CDS |
| CAGAATCAAGTTCTCCGAAA+AGG | 0.456324 | 1.3:-54187352 | MS.gene71426:CDS |
| AAAGAGAGGCCTCTTGAAAA+GGG | 0.466927 | 1.3:-54187874 | MS.gene71426:CDS |
| TGATGAAAATGGACAGAGTT+GGG | 0.467084 | 1.3:-54186369 | MS.gene71426:CDS |
| CCATAGCAGAAAGATATTCC+TGG | 0.468898 | 1.3:+54187428 | None:intergenic |
| CTTCTAGCAGGTTCAACAGT+TGG | 0.469944 | 1.3:-54187547 | MS.gene71426:CDS |
| TTCTTTGCAAAATAGAGAAA+AGG | 0.470331 | 1.3:-54188163 | MS.gene71426:CDS |
| AAGAATCAGTGCAATTCTCT+TGG | 0.470784 | 1.3:+54186250 | None:intergenic |
| CGGATTATGTGCTAACAGAT+TGG | 0.473263 | 1.3:-54187483 | MS.gene71426:CDS |
| CATGAAGCATGGACTGCAGC+GGG | 0.474651 | 1.3:-54186618 | MS.gene71426:CDS |
| GTAATTGTCGGTTCCGGTTG+CGG | 0.477209 | 1.3:-54187736 | MS.gene71426:CDS |
| CTGAGGATACTAATAGCAGC+TGG | 0.477632 | 1.3:-54186593 | MS.gene71426:CDS |
| AATAGCAGCTGGAGCGGTTG+AGG | 0.480128 | 1.3:-54186582 | MS.gene71426:CDS |
| TTTGAGAAGTTGTTGATGAA+AGG | 0.483652 | 1.3:+54188189 | None:intergenic |
| CTAGCAGGTTCAACAGTTGG+TGG | 0.486746 | 1.3:-54187544 | MS.gene71426:CDS |
| CAAGTTTCTTGATGTGACAT+TGG | 0.487189 | 1.3:+54186461 | None:intergenic |
| GAGAATGGTGTTACTTGATG+AGG | 0.494530 | 1.3:+54190869 | None:intergenic |
| TGGATACTATCAACAAAGTT+GGG | 0.495978 | 1.3:-54188255 | MS.gene71426:CDS |
| CAATCTGTTAGCACATAATC+CGG | 0.496225 | 1.3:+54187484 | None:intergenic |
| TCTCAAGGGTAAAAGCTATG+AGG | 0.496801 | 1.3:-54186900 | MS.gene71426:CDS |
| GGATTAAAGAATAAGAATAT+CGG | 0.503081 | 1.3:-54186986 | MS.gene71426:CDS |
| CCAGGAATATCTTTCTGCTA+TGG | 0.508865 | 1.3:-54187428 | MS.gene71426:CDS |
| TAGGATAGGAATCAATGATA+AGG | 0.509280 | 1.3:-54186402 | MS.gene71426:CDS |
| GCAGGTTCAACAGTTGGTGG+TGG | 0.523218 | 1.3:-54187541 | MS.gene71426:CDS |
| TCCTTCAACCACACAAGTAT+CGG | 0.532686 | 1.3:+54187378 | None:intergenic |
| GGATTGATACCTATTGCAGT+TGG | 0.535199 | 1.3:+54186308 | None:intergenic |
| GGACACAATGTCTGATCTCA+AGG | 0.540207 | 1.3:-54186915 | MS.gene71426:CDS |
| ATCACAATTATTCAGGACAA+AGG | 0.541062 | 1.3:-54186707 | MS.gene71426:CDS |
| CTCACCAGATGGGGAGCTGT+AGG | 0.542281 | 1.3:-54186421 | MS.gene71426:CDS |
| AATGGAATTGAATAAGTTCG+TGG | 0.543373 | 1.3:-54186507 | MS.gene71426:CDS |
| TTGAGATCAGACATTGTGTC+CGG | 0.544200 | 1.3:+54186917 | None:intergenic |
| ACCGATACTTGTGTGGTTGA+AGG | 0.546489 | 1.3:-54187379 | MS.gene71426:CDS |
| TCCGGATTCCCAAGGAATCA+CGG | 0.548198 | 1.3:+54186778 | None:intergenic |
| CTCAAGGGTAAAAGCTATGA+GGG | 0.548924 | 1.3:-54186899 | MS.gene71426:CDS |
| AACAAGGGACCGATGTTACA+TGG | 0.551305 | 1.3:-54187231 | MS.gene71426:CDS |
| ATTGTCAACATTATAACCAA+TGG | 0.553254 | 1.3:+54187921 | None:intergenic |
| TATGCATCTGCTCACCAGAT+GGG | 0.553951 | 1.3:-54186431 | MS.gene71426:CDS |
| GAATCGGTTTGCGCAGCAGA+AGG | 0.554516 | 1.3:-54186485 | MS.gene71426:CDS |
| GATGTGGTAATTGTCGGTTC+CGG | 0.558351 | 1.3:-54187742 | MS.gene71426:CDS |
| AGAATGGTGAAAACCAAGCA+TGG | 0.558763 | 1.3:-54187948 | MS.gene71426:CDS |
| GTATGCATCTGCTCACCAGA+TGG | 0.560838 | 1.3:-54186432 | MS.gene71426:CDS |
| CCGACACCTTCATCTTCATC+CGG | 0.565011 | 1.3:-54186963 | MS.gene71426:CDS |
| GCAGCTGGAGCGGTTGAGGT+AGG | 0.565339 | 1.3:-54186578 | MS.gene71426:CDS |
| CCACCTTTAATGATCTCTAG+TGG | 0.569008 | 1.3:-54187007 | MS.gene71426:CDS |
| TGGTGTTACTTGATGAGGGA+TGG | 0.570869 | 1.3:+54190874 | None:intergenic |
| ATTATTCAGGACAAAGGCTG+TGG | 0.571257 | 1.3:-54186701 | MS.gene71426:CDS |
| AATAGTGGAAGCTATGAATG+AGG | 0.571988 | 1.3:-54187851 | MS.gene71426:CDS |
| GAGAGGTGAAGAGCGAGGGT+AGG | 0.576606 | 1.3:-54186679 | MS.gene71426:CDS |
| GTCAGCATCGATTAAAACAC+CGG | 0.576906 | 1.3:-54187503 | MS.gene71426:CDS |
| CTATGGACACAGTGTGTGAA+AGG | 0.583294 | 1.3:-54187411 | MS.gene71426:CDS |
| TTGATGAAAATGGACAGAGT+TGG | 0.583497 | 1.3:-54186370 | MS.gene71426:CDS |
| TTCATCCGGTGCTAATGACG+TGG | 0.583910 | 1.3:-54186949 | MS.gene71426:CDS |
| AACCAAGCATGGGAAGCCAT+TGG | 0.585115 | 1.3:-54187937 | MS.gene71426:CDS |
| ATCACGGTAGAAAATGCTCC+TGG | 0.585658 | 1.3:+54186794 | None:intergenic |
| ATTGTCGGTTCCGGTTGCGG+TGG | 0.585797 | 1.3:-54187733 | MS.gene71426:CDS |
| AAATGTGATGTGGTAATTGT+CGG | 0.589360 | 1.3:-54187748 | MS.gene71426:CDS |
| GTAGGTACTCACAGAAGTGA+TGG | 0.590039 | 1.3:-54186560 | MS.gene71426:CDS |
| TTCATAAAGCTCATTCAAAG+AGG | 0.590225 | 1.3:+54187609 | None:intergenic |
| ATAGACTGAATAGTTATCAT+GGG | 0.590238 | 1.3:+54186287 | None:intergenic |
| CAGATGGGGAGCTGTAGGAT+AGG | 0.592554 | 1.3:-54186416 | MS.gene71426:CDS |
| TCATAAAGCTCATTCAAAGA+GGG | 0.592604 | 1.3:+54187610 | None:intergenic |
| GGACAGAGAATTGTTTGTAG+TGG | 0.596435 | 1.3:-54186539 | MS.gene71426:CDS |
| ATAGGAATCAATGATAAGGA+AGG | 0.596518 | 1.3:-54186398 | MS.gene71426:CDS |
| TGTGGAGAGGTGAAGAGCGA+GGG | 0.597034 | 1.3:-54186683 | MS.gene71426:CDS |
| TGTCCCCACGTCATTAGCAC+CGG | 0.599243 | 1.3:+54186944 | None:intergenic |
| AAGTCGAATCCGGATTCCCA+AGG | 0.600974 | 1.3:+54186770 | None:intergenic |
| CTTGTCGATGCTGTGGAACA+CGG | 0.606706 | 1.3:-54187208 | MS.gene71426:CDS |
| ATGGACTGCAGCGGGCGCTG+AGG | 0.607128 | 1.3:-54186610 | MS.gene71426:CDS |
| AGAAGAATACAATAAGGCAA+AGG | 0.611697 | 1.3:+54188073 | None:intergenic |
| GACAAAGAGAACATGAAGCA+TGG | 0.612560 | 1.3:-54186629 | MS.gene71426:CDS |
| GAATGGTGAAAACCAAGCAT+GGG | 0.613187 | 1.3:-54187947 | MS.gene71426:CDS |
| CACATGGAAAATTCAAGTTG+AGG | 0.613852 | 1.3:-54187068 | MS.gene71426:CDS |
| CTGTGGAGAGGTGAAGAGCG+AGG | 0.615354 | 1.3:-54186684 | MS.gene71426:CDS |
| AGAATGGTGTTACTTGATGA+GGG | 0.619176 | 1.3:+54190870 | None:intergenic |
| AATGAGCTTTATGAACTAGG+AGG | 0.619554 | 1.3:-54187601 | MS.gene71426:CDS |
| TTAGCACCGGATGAAGATGA+AGG | 0.622006 | 1.3:+54186957 | None:intergenic |
| AGAGATCATTAAAGGTGGCG+TGG | 0.622955 | 1.3:+54187012 | None:intergenic |
| GAAACTCCTTCACTAGGACC+AGG | 0.624328 | 1.3:-54186812 | MS.gene71426:CDS |
| TCATCCGGTGCTAATGACGT+GGG | 0.624664 | 1.3:-54186948 | MS.gene71426:CDS |
| TGTAGAAAAGGAAATAAACA+AGG | 0.630244 | 1.3:-54187247 | MS.gene71426:CDS |
| AATGCTCCTGGTCCTAGTGA+AGG | 0.631108 | 1.3:+54186806 | None:intergenic |
| GATACTAATAGCAGCTGGAG+CGG | 0.631509 | 1.3:-54186588 | MS.gene71426:CDS |
| ATCGACAAGCCATGTAACAT+CGG | 0.634021 | 1.3:+54187222 | None:intergenic |
| ACATGAAGCATGGACTGCAG+CGG | 0.635189 | 1.3:-54186619 | MS.gene71426:CDS |
| CCGGATGAAGATGAAGGTGT+CGG | 0.635230 | 1.3:+54186963 | None:intergenic |
| TATTCCTGGCTTGAAAAGAG+TGG | 0.635586 | 1.3:+54187442 | None:intergenic |
| ATAATTGAAACTCCTTCACT+AGG | 0.640706 | 1.3:-54186818 | MS.gene71426:CDS |
| ATGCATCTGCTCACCAGATG+GGG | 0.645408 | 1.3:-54186430 | MS.gene71426:CDS |
| TTGGGAACTTTGTTGCTGTG+TGG | 0.647271 | 1.3:-54188237 | MS.gene71426:CDS |
| ATGCAAGTCTAATAGGTGTG+AGG | 0.652221 | 1.3:+54188112 | None:intergenic |
| TGCATGCAGTGTGATGAGAA+TGG | 0.652881 | 1.3:-54187964 | MS.gene71426:intron |
| TACATGGCTTGTCGATGCTG+TGG | 0.655714 | 1.3:-54187215 | MS.gene71426:CDS |
| TCATCAGAGCATCATTACTG+TGG | 0.658251 | 1.3:-54187286 | MS.gene71426:CDS |
| CCACTAGAGATCATTAAAGG+TGG | 0.659295 | 1.3:+54187007 | None:intergenic |
| CGATGCTGACCAATTTATAG+CGG | 0.662093 | 1.3:+54187516 | None:intergenic |
| GACACAATGTCTGATCTCAA+GGG | 0.662661 | 1.3:-54186914 | MS.gene71426:CDS |
| AATCAATGATAAGGAAGGCG+CGG | 0.675213 | 1.3:-54186393 | MS.gene71426:CDS |
| TCAGGACAAAGGCTGTGGAG+AGG | 0.675886 | 1.3:-54186696 | MS.gene71426:CDS |
| GACACAGTGTGTGAAAGGAT+CGG | 0.690079 | 1.3:-54187406 | MS.gene71426:CDS |
| CATCCGGTGCTAATGACGTG+GGG | 0.691078 | 1.3:-54186947 | MS.gene71426:CDS |
| CGGTGTAACCGATACTTGTG+TGG | 0.693449 | 1.3:-54187386 | MS.gene71426:CDS |
| AAGGGTAAAAGCTATGAGGG+AGG | 0.696437 | 1.3:-54186896 | MS.gene71426:CDS |
| CCTCAAAGTGAAATGTGATG+TGG | 0.700192 | 1.3:-54187758 | MS.gene71426:CDS |
| GTAGAAAAGGAAATAAACAA+GGG | 0.702397 | 1.3:-54187246 | MS.gene71426:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTATTTTTAATTT+GGG | + | chr1.3:54188482-54188501 | None:intergenic | 0.0% |
| !!! | TTTTTTATTTATTTTTAATT+TGG | + | chr1.3:54188483-54188502 | None:intergenic | 0.0% |
| !! | ACTGTATTATAAAATAAATA+TGG | - | chr1.3:54187046-54187065 | MS.gene71426:CDS | 10.0% |
| !! | ATTATAAAATAAATATGGTA+AGG | - | chr1.3:54187051-54187070 | MS.gene71426:CDS | 10.0% |
| !! | TAAATAAAAAATAATCCATA+TGG | - | chr1.3:54188492-54188511 | MS.gene71426:intron | 10.0% |
| !!! | AAAATTTTAATTTGAATTTC+TGG | - | chr1.3:54188346-54188365 | MS.gene71426:intron | 10.0% |
| !!! | ATTTTTTTTTGATCTATTTA+AGG | - | chr1.3:54187193-54187212 | MS.gene71426:CDS | 10.0% |
| !!! | TTAATCAATGATAATTATTT+TGG | + | chr1.3:54187250-54187269 | None:intergenic | 10.0% |
| !! | AAATTTCAATCTCATATTTA+TGG | + | chr1.3:54187774-54187793 | None:intergenic | 15.0% |
| !! | AATCATTTCTCTTAAATTAA+AGG | - | chr1.3:54188146-54188165 | MS.gene71426:CDS | 15.0% |
| !! | ATCATTTCTCTTAAATTAAA+GGG | - | chr1.3:54188147-54188166 | MS.gene71426:CDS | 15.0% |
| !! | ATTAATATAAAAATGTGCAT+AGG | - | chr1.3:54188812-54188831 | MS.gene71426:intron | 15.0% |
| !! | GTGTTATAAAAAAAATTACA+TGG | + | chr1.3:54187918-54187937 | None:intergenic | 15.0% |
| !! | TAGATATTGTTTACATTAAA+CGG | + | chr1.3:54186687-54186706 | None:intergenic | 15.0% |
| !!! | AAATGACATAATTTTTTGTA+AGG | + | chr1.3:54187941-54187960 | None:intergenic | 15.0% |
| !!! | AATGACATAATTTTTTGTAA+GGG | + | chr1.3:54187940-54187959 | None:intergenic | 15.0% |
| !!! | AATTCTTTTGTATCAAAATA+AGG | + | chr1.3:54186924-54186943 | None:intergenic | 15.0% |
| !!! | ATCATTGATTAGTTTTTTTT+TGG | + | chr1.3:54187347-54187366 | None:intergenic | 15.0% |
| !!! | TAATTATCTTTGAATGATTT+TGG | + | chr1.3:54186361-54186380 | None:intergenic | 15.0% |
| !!! | TGGATTAGTTTTTTTTTTTT+TGG | + | chr1.3:54187311-54187330 | None:intergenic | 15.0% |
| !! | AAACTCTTTCAAAATATGTT+TGG | + | chr1.3:54187078-54187097 | None:intergenic | 20.0% |
| !! | AAAGAATTTCAAATTTCACA+AGG | - | chr1.3:54186936-54186955 | MS.gene71426:CDS | 20.0% |
| !! | ACTCAACAATAACAAAAAAT+AGG | - | chr1.3:54186764-54186783 | MS.gene71426:CDS | 20.0% |
| !! | ATAACAATAAAGAGAGAAAA+AGG | - | chr1.3:54188062-54188081 | MS.gene71426:intron | 20.0% |
| !! | ATATATTAAGTTTGACATCA+TGG | - | chr1.3:54188559-54188578 | MS.gene71426:intron | 20.0% |
| !! | ATCATTCCTCTTAATTTAAA+TGG | + | chr1.3:54187980-54187999 | None:intergenic | 20.0% |
| !! | GGATTAAAGAATAAGAATAT+CGG | - | chr1.3:54190166-54190185 | MS.gene71426:intron | 20.0% |
| !! | GTTTAATGTAAACAATATCT+AGG | - | chr1.3:54186686-54186705 | MS.gene71426:CDS | 20.0% |
| !! | TCATTCCTCTTAATTTAAAT+GGG | + | chr1.3:54187979-54187998 | None:intergenic | 20.0% |
| !!! | AAACTCATTGATTTTTTTTG+TGG | + | chr1.3:54186865-54186884 | None:intergenic | 20.0% |
| !!! | AACTCATTGATTTTTTTTGT+GGG | + | chr1.3:54186864-54186883 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTTGAAGGAATA+TGG | + | chr1.3:54186399-54186418 | None:intergenic | 20.0% |
| !!! | ACCCTTTAATTTTTTCTAAA+AGG | + | chr1.3:54187527-54187546 | None:intergenic | 20.0% |
| !!! | AGGAAATAATTTTCTTTTGA+AGG | + | chr1.3:54186406-54186425 | None:intergenic | 20.0% |
| !!! | GCCTTTTAGAAAAAATTAAA+GGG | - | chr1.3:54187523-54187542 | MS.gene71426:CDS | 20.0% |
| !!! | TCCTTTAAAAAAAATTGCAT+CGG | + | chr1.3:54186491-54186510 | None:intergenic | 20.0% |
| !!! | TGCCTTTTAGAAAAAATTAA+AGG | - | chr1.3:54187522-54187541 | MS.gene71426:CDS | 20.0% |
| !!! | TGTCAGAATAGTTTTTTTTA+AGG | - | chr1.3:54187843-54187862 | MS.gene71426:CDS | 20.0% |
| !!! | TTATTTTTTGTATCTAGATC+TGG | + | chr1.3:54186838-54186857 | None:intergenic | 20.0% |
| !!! | TTCAATTATAGCTTTTACTT+TGG | + | chr1.3:54190323-54190342 | None:intergenic | 20.0% |
| !!! | TTGAGTTTATTTGATTTCAA+TGG | - | chr1.3:54187496-54187515 | MS.gene71426:CDS | 20.0% |
| !!! | TTTTTTTCATTTTTCTTCTG+TGG | - | chr1.3:54188372-54188391 | MS.gene71426:intron | 20.0% |
| ! | AAAATATCAGCATGCATATA+TGG | - | chr1.3:54188771-54188790 | MS.gene71426:intron | 25.0% |
| ! | AAAGAAATGTTTAGGAGTTA+TGG | - | chr1.3:54190039-54190058 | MS.gene71426:intron | 25.0% |
| ! | AATAGACTGAATAGTTATCA+TGG | + | chr1.3:54190869-54190888 | None:intergenic | 25.0% |
| ! | ACATGGACAAAAATCTAAAT+AGG | + | chr1.3:54187901-54187920 | None:intergenic | 25.0% |
| ! | AGGAATATGGAAATAAACAA+TGG | + | chr1.3:54186386-54186405 | None:intergenic | 25.0% |
| ! | ATAGACTGAATAGTTATCAT+GGG | + | chr1.3:54190868-54190887 | None:intergenic | 25.0% |
| ! | ATCAATTTCAAGACCTTTAT+TGG | + | chr1.3:54189354-54189373 | None:intergenic | 25.0% |
| ! | ATTGTCAACATTATAACCAA+TGG | + | chr1.3:54189234-54189253 | None:intergenic | 25.0% |
| ! | CAAGTAATATTCAAAAAGAG+AGG | - | chr1.3:54189264-54189283 | MS.gene71426:intron | 25.0% |
| ! | GAACATATTGACAAATGATA+AGG | + | chr1.3:54186426-54186445 | None:intergenic | 25.0% |
| ! | GATACTGAAAAAATAGAGAA+TGG | + | chr1.3:54186301-54186320 | None:intergenic | 25.0% |
| ! | GTAGAAAAGGAAATAAACAA+GGG | - | chr1.3:54189906-54189925 | MS.gene71426:intron | 25.0% |
| ! | TAAAGAAATGCAAGTCTAAT+AGG | + | chr1.3:54189050-54189069 | None:intergenic | 25.0% |
| ! | TAGTTATCTAGTAGAGAATT+AGG | - | chr1.3:54188529-54188548 | MS.gene71426:intron | 25.0% |
| ! | TCATTTCATCACAATTATTC+AGG | - | chr1.3:54190438-54190457 | MS.gene71426:intron | 25.0% |
| ! | TCTTAAATTAAAGGGTTATG+TGG | - | chr1.3:54188155-54188174 | MS.gene71426:CDS | 25.0% |
| ! | TCTTAATTTAAATGGGATCA+GGG | + | chr1.3:54187972-54187991 | None:intergenic | 25.0% |
| ! | TGTAGAAAAGGAAATAAACA+AGG | - | chr1.3:54189905-54189924 | MS.gene71426:intron | 25.0% |
| ! | TGTATCAAAATAAGGTTCAA+AGG | + | chr1.3:54186916-54186935 | None:intergenic | 25.0% |
| ! | TTATTGTCCAATAGAAATAG+AGG | + | chr1.3:54188046-54188065 | None:intergenic | 25.0% |
| ! | TTCTTTGCAAAATAGAGAAA+AGG | - | chr1.3:54188989-54189008 | MS.gene71426:intron | 25.0% |
| ! | TTTATGTTATTATCGTTGAG+TGG | + | chr1.3:54188711-54188730 | None:intergenic | 25.0% |
| !! | AAAGTACTTGTTCTTGAAAA+GGG | - | chr1.3:54189479-54189498 | MS.gene71426:intron | 25.0% |
| !! | AACCAATTTCTAACAACTTT+TGG | - | chr1.3:54188008-54188027 | MS.gene71426:intron | 25.0% |
| !! | ATTTTACAAAATCGACCATA+TGG | + | chr1.3:54188510-54188529 | None:intergenic | 25.0% |
| !! | CAAAGCTGAAAAGTTTATTT+TGG | - | chr1.3:54189988-54190007 | MS.gene71426:intron | 25.0% |
| !! | TCTTTTTATTGTGTTTGTGA+TGG | - | chr1.3:54189146-54189165 | MS.gene71426:intron | 25.0% |
| !! | TTTTAACAGAAAACATCACA+TGG | - | chr1.3:54190068-54190087 | MS.gene71426:intron | 25.0% |
| !!! | ACATTTTCCTCTATTTCTAT+TGG | - | chr1.3:54188036-54188055 | MS.gene71426:intron | 25.0% |
| !!! | GTTTATTTTGGAGAATAACA+AGG | - | chr1.3:54190000-54190019 | MS.gene71426:intron | 25.0% |
| !!! | TCCGATGCAATTTTTTTTAA+AGG | - | chr1.3:54186487-54186506 | MS.gene71426:CDS | 25.0% |
| !!! | TGCTGATATTTTATTGACTT+TGG | + | chr1.3:54188763-54188782 | None:intergenic | 25.0% |
| AAATGTGATGTGGTAATTGT+CGG | - | chr1.3:54189404-54189423 | MS.gene71426:intron | 30.0% | |
| AATCCACTAGAGATCATTAA+AGG | + | chr1.3:54190151-54190170 | None:intergenic | 30.0% | |
| AATGGAATTGAATAAGTTCG+TGG | - | chr1.3:54190645-54190664 | MS.gene71426:intron | 30.0% | |
| ACAAGGAATAAGAAAGAGTA+GGG | - | chr1.3:54186953-54186972 | MS.gene71426:CDS | 30.0% | |
| AGAAGAATACAATAAGGCAA+AGG | + | chr1.3:54189082-54189101 | None:intergenic | 30.0% | |
| AGATTGTTTGAGAAAGCTTA+TGG | - | chr1.3:54188638-54188657 | MS.gene71426:intron | 30.0% | |
| ATAATTGAAACTCCTTCACT+AGG | - | chr1.3:54190334-54190353 | MS.gene71426:intron | 30.0% | |
| ATAGGAATCAATGATAAGGA+AGG | - | chr1.3:54190754-54190773 | MS.gene71426:intron | 30.0% | |
| ATCACAATTATTCAGGACAA+AGG | - | chr1.3:54190445-54190464 | MS.gene71426:intron | 30.0% | |
| ATGGATACTATCAACAAAGT+TGG | - | chr1.3:54188896-54188915 | MS.gene71426:intron | 30.0% | |
| ATTGAATAAGTTCGTGGAAT+CGG | - | chr1.3:54190651-54190670 | MS.gene71426:intron | 30.0% | |
| CACCAAAAGTTGTTAGAAAT+TGG | + | chr1.3:54188013-54188032 | None:intergenic | 30.0% | |
| CTCTTAATTTAAATGGGATC+AGG | + | chr1.3:54187973-54187992 | None:intergenic | 30.0% | |
| CTGATCCCATTTAAATTAAG+AGG | - | chr1.3:54187971-54187990 | MS.gene71426:intron | 30.0% | |
| GAGAAAAGGTTCTTCAAAAA+TGG | - | chr1.3:54189003-54189022 | MS.gene71426:intron | 30.0% | |
| GTAAACAATATCTAGGTCTA+AGG | - | chr1.3:54186693-54186712 | MS.gene71426:CDS | 30.0% | |
| GTGAGAAGAAAGAAATGTTT+AGG | - | chr1.3:54190031-54190050 | MS.gene71426:intron | 30.0% | |
| TAGGATAGGAATCAATGATA+AGG | - | chr1.3:54190750-54190769 | MS.gene71426:intron | 30.0% | |
| TCAAGAGAAGAAAAATCTCT+CGG | + | chr1.3:54189518-54189537 | None:intergenic | 30.0% | |
| TCATAAAGCTCATTCAAAGA+GGG | + | chr1.3:54189545-54189564 | None:intergenic | 30.0% | |
| TGAGTTTAGCAAAAACAACA+AGG | - | chr1.3:54186878-54186897 | MS.gene71426:CDS | 30.0% | |
| TGGATACTATCAACAAAGTT+GGG | - | chr1.3:54188897-54188916 | MS.gene71426:intron | 30.0% | |
| TGTAACTATGGTTGTAGAAA+AGG | - | chr1.3:54189893-54189912 | MS.gene71426:intron | 30.0% | |
| TTATCTAGTAGAGAATTAGG+AGG | - | chr1.3:54188532-54188551 | MS.gene71426:intron | 30.0% | |
| TTATTATCGTTGAGTGGTTA+AGG | + | chr1.3:54188705-54188724 | None:intergenic | 30.0% | |
| TTCAAAAATGGTTCAAGCAT+CGG | - | chr1.3:54189015-54189034 | MS.gene71426:intron | 30.0% | |
| TTCATAAAGCTCATTCAAAG+AGG | + | chr1.3:54189546-54189565 | None:intergenic | 30.0% | |
| TTTCAAGAACAAGTACTTTG+AGG | + | chr1.3:54189478-54189497 | None:intergenic | 30.0% | |
| ! | AGAGATTTTTCTTCTCTTGA+AGG | - | chr1.3:54189518-54189537 | MS.gene71426:intron | 30.0% |
| ! | CAAAGTACTTGTTCTTGAAA+AGG | - | chr1.3:54189478-54189497 | MS.gene71426:intron | 30.0% |
| ! | TTGAATGAGCTTTATGAACT+AGG | - | chr1.3:54189548-54189567 | MS.gene71426:intron | 30.0% |
| ! | TTGTAGTGGAACTAATGAAA+TGG | - | chr1.3:54190627-54190646 | MS.gene71426:intron | 30.0% |
| ! | TTTAAAGTTCACGAACAACT+CGG | + | chr1.3:54187636-54187655 | None:intergenic | 30.0% |
| ! | TTTGAGAAGTTGTTGATGAA+AGG | + | chr1.3:54188966-54188985 | None:intergenic | 30.0% |
| !! | ATTTTGGAGAATAACAAGGA+AGG | - | chr1.3:54190004-54190023 | MS.gene71426:intron | 30.0% |
| !! | GTTGAAGCAATTTTTCAGTT+TGG | + | chr1.3:54186735-54186754 | None:intergenic | 30.0% |
| !! | TGAATAAGCGTTTTCTGAAA+AGG | - | chr1.3:54187420-54187439 | MS.gene71426:CDS | 30.0% |
| !! | TTTTTGGTAGATAGACGAAA+TGG | + | chr1.3:54187331-54187350 | None:intergenic | 30.0% |
| AAGAATCAGTGCAATTCTCT+TGG | + | chr1.3:54190905-54190924 | None:intergenic | 35.0% | |
| CAAAAAACCAACCTTGATCA+CGG | + | chr1.3:54186650-54186669 | None:intergenic | 35.0% | |
| CAAGTTTCTTGATGTGACAT+TGG | + | chr1.3:54190694-54190713 | None:intergenic | 35.0% | |
| CAATCTGTTAGCACATAATC+CGG | + | chr1.3:54189671-54189690 | None:intergenic | 35.0% | |
| CAATGTCACATCAAGAAACT+TGG | - | chr1.3:54190692-54190711 | MS.gene71426:intron | 35.0% | |
| CACAAGGAATAAGAAAGAGT+AGG | - | chr1.3:54186952-54186971 | MS.gene71426:CDS | 35.0% | |
| CCTGAGAGAAGAATACAATA+AGG | + | chr1.3:54189088-54189107 | None:intergenic | 35.0% | |
| CCTTATTGTATTCTTCTCTC+AGG | - | chr1.3:54189085-54189104 | MS.gene71426:intron | 35.0% | |
| GAACGTGAGTTTGAAAATAG+CGG | - | chr1.3:54188425-54188444 | MS.gene71426:intron | 35.0% | |
| GGAAAAATAGTTCTTCTAGC+AGG | - | chr1.3:54189593-54189612 | MS.gene71426:intron | 35.0% | |
| GTATCCATAGAATCACTCTA+AGG | + | chr1.3:54188884-54188903 | None:intergenic | 35.0% | |
| TACTCCTTAGAGTGATTCTA+TGG | - | chr1.3:54188877-54188896 | MS.gene71426:intron | 35.0% | |
| TACTGTGGTTCTTGTAACTA+TGG | - | chr1.3:54189881-54189900 | MS.gene71426:intron | 35.0% | |
| TCAAACAAAAACCGTGATCA+AGG | - | chr1.3:54186636-54186655 | MS.gene71426:CDS | 35.0% | |
| TCAAAGATTGTTAGACGAGA+TGG | + | chr1.3:54187403-54187422 | None:intergenic | 35.0% | |
| TCGCAATCTCTTTCCAATAA+AGG | - | chr1.3:54189338-54189357 | MS.gene71426:intron | 35.0% | |
| TGATGAAAATGGACAGAGTT+GGG | - | chr1.3:54190783-54190802 | MS.gene71426:intron | 35.0% | |
| TGATGCTCTGATGAATTTCT+CGG | + | chr1.3:54189860-54189879 | None:intergenic | 35.0% | |
| TTGATGAAAATGGACAGAGT+TGG | - | chr1.3:54190782-54190801 | MS.gene71426:intron | 35.0% | |
| ! | AATAGTGGAAGCTATGAATG+AGG | - | chr1.3:54189301-54189320 | MS.gene71426:intron | 35.0% |
| ! | AATGAGCTTTATGAACTAGG+AGG | - | chr1.3:54189551-54189570 | MS.gene71426:intron | 35.0% |
| ! | ACATGATGAGATTGTTGCTT+TGG | + | chr1.3:54190110-54190129 | None:intergenic | 35.0% |
| ! | AGTTTGTTTCCAACTGCAAT+AGG | - | chr1.3:54190835-54190854 | MS.gene71426:intron | 35.0% |
| ! | ATTTTCTACCGTGATTCCTT+GGG | - | chr1.3:54190366-54190385 | MS.gene71426:intron | 35.0% |
| ! | CAAGTTCGTTACAACCTTTT+CGG | + | chr1.3:54189817-54189836 | None:intergenic | 35.0% |
| ! | CTAAGGAGTATAACTACTTC+TGG | + | chr1.3:54188867-54188886 | None:intergenic | 35.0% |
| !! | AGAATGGTGTTACTTGATGA+GGG | + | chr1.3:54186285-54186304 | None:intergenic | 35.0% |
| !! | CACATGGAAAATTCAAGTTG+AGG | - | chr1.3:54190084-54190103 | MS.gene71426:intron | 35.0% |
| !! | TCACGGTTTTTGTTTGAAGA+TGG | + | chr1.3:54186633-54186652 | None:intergenic | 35.0% |
| !! | TCTTTCTTTGAAGTCGAATC+CGG | + | chr1.3:54190395-54190414 | None:intergenic | 35.0% |
| AAAAGAGAGGCCTCTTGAAA+AGG | - | chr1.3:54189277-54189296 | MS.gene71426:intron | 40.0% | |
| AAAGAGAGGCCTCTTGAAAA+GGG | - | chr1.3:54189278-54189297 | MS.gene71426:intron | 40.0% | |
| AATCAATGATAAGGAAGGCG+CGG | - | chr1.3:54190759-54190778 | MS.gene71426:intron | 40.0% | |
| ACAAAAACCGTGATCAAGGT+TGG | - | chr1.3:54186640-54186659 | MS.gene71426:CDS | 40.0% | |
| AGAATGGTGAAAACCAAGCA+TGG | - | chr1.3:54189204-54189223 | MS.gene71426:intron | 40.0% | |
| ATCGACAAGCCATGTAACAT+CGG | + | chr1.3:54189933-54189952 | None:intergenic | 40.0% | |
| ATGCAAGTCTAATAGGTGTG+AGG | + | chr1.3:54189043-54189062 | None:intergenic | 40.0% | |
| ATTATTCAGGACAAAGGCTG+TGG | - | chr1.3:54190451-54190470 | MS.gene71426:intron | 40.0% | |
| CAGAATCAAGTTCTCCGAAA+AGG | - | chr1.3:54189800-54189819 | MS.gene71426:intron | 40.0% | |
| CCACATCACATTTCACTTTG+AGG | + | chr1.3:54189397-54189416 | None:intergenic | 40.0% | |
| CCACCTTTAATGATCTCTAG+TGG | - | chr1.3:54190145-54190164 | MS.gene71426:intron | 40.0% | |
| CCACTAGAGATCATTAAAGG+TGG | + | chr1.3:54190148-54190167 | None:intergenic | 40.0% | |
| CCAGGAATATCTTTCTGCTA+TGG | - | chr1.3:54189724-54189743 | MS.gene71426:intron | 40.0% | |
| CCATAGCAGAAAGATATTCC+TGG | + | chr1.3:54189727-54189746 | None:intergenic | 40.0% | |
| CCTCAAAGTGAAATGTGATG+TGG | - | chr1.3:54189394-54189413 | MS.gene71426:intron | 40.0% | |
| CGAAAAGGTTGTAACGAACT+TGG | - | chr1.3:54189815-54189834 | MS.gene71426:intron | 40.0% | |
| CGACACGATAAAAATTGGCT+TGG | + | chr1.3:54187713-54187732 | None:intergenic | 40.0% | |
| CGATGCTGACCAATTTATAG+CGG | + | chr1.3:54189639-54189658 | None:intergenic | 40.0% | |
| CGGATTATGTGCTAACAGAT+TGG | - | chr1.3:54189669-54189688 | MS.gene71426:intron | 40.0% | |
| CTCAAGGGTAAAAGCTATGA+GGG | - | chr1.3:54190253-54190272 | MS.gene71426:intron | 40.0% | |
| CTCTCTGTCTGACTATGAAA+TGG | - | chr1.3:54188940-54188959 | MS.gene71426:intron | 40.0% | |
| GAATGGTGAAAACCAAGCAT+GGG | - | chr1.3:54189205-54189224 | MS.gene71426:intron | 40.0% | |
| GACAAAGAGAACATGAAGCA+TGG | - | chr1.3:54190523-54190542 | MS.gene71426:intron | 40.0% | |
| GAGCTCGACACGATAAAAAT+TGG | + | chr1.3:54187718-54187737 | None:intergenic | 40.0% | |
| GGACAGAGAATTGTTTGTAG+TGG | - | chr1.3:54190613-54190632 | MS.gene71426:intron | 40.0% | |
| GGATTGATACCTATTGCAGT+TGG | + | chr1.3:54190847-54190866 | None:intergenic | 40.0% | |
| TAAAGGGTTATGTGGCAGTT+TGG | - | chr1.3:54188163-54188182 | MS.gene71426:CDS | 40.0% | |
| TCCTTCAACCACACAAGTAT+CGG | + | chr1.3:54189777-54189796 | None:intergenic | 40.0% | |
| TCTCAAGGGTAAAAGCTATG+AGG | - | chr1.3:54190252-54190271 | MS.gene71426:intron | 40.0% | |
| ! | AGGAGGAACTTTTGCAACAT+CGG | - | chr1.3:54189568-54189587 | MS.gene71426:intron | 40.0% |
| ! | CATTTTCTACCGTGATTCCT+TGG | - | chr1.3:54190365-54190384 | MS.gene71426:intron | 40.0% |
| ! | TATTCCTGGCTTGAAAAGAG+TGG | + | chr1.3:54189713-54189732 | None:intergenic | 40.0% |
| ! | TCATCAGAGCATCATTACTG+TGG | - | chr1.3:54189866-54189885 | MS.gene71426:intron | 40.0% |
| !! | GAGAATGGTGTTACTTGATG+AGG | + | chr1.3:54186286-54186305 | None:intergenic | 40.0% |
| !! | GTCAGCATCGATTAAAACAC+CGG | - | chr1.3:54189649-54189668 | MS.gene71426:intron | 40.0% |
| !! | TCCACTATTCCCTTTTCAAG+AGG | + | chr1.3:54189290-54189309 | None:intergenic | 40.0% |
| AACAAGGGACCGATGTTACA+TGG | - | chr1.3:54189921-54189940 | MS.gene71426:intron | 45.0% | |
| AAGGGTAAAAGCTATGAGGG+AGG | - | chr1.3:54190256-54190275 | MS.gene71426:intron | 45.0% | |
| ACCGATACTTGTGTGGTTGA+AGG | - | chr1.3:54189773-54189792 | MS.gene71426:intron | 45.0% | |
| AGAGATCATTAAAGGTGGCG+TGG | + | chr1.3:54190143-54190162 | None:intergenic | 45.0% | |
| ATCACGGTAGAAAATGCTCC+TGG | + | chr1.3:54190361-54190380 | None:intergenic | 45.0% | |
| CTATGGACACAGTGTGTGAA+AGG | - | chr1.3:54189741-54189760 | MS.gene71426:intron | 45.0% | |
| CTGAGGATACTAATAGCAGC+TGG | - | chr1.3:54190559-54190578 | MS.gene71426:intron | 45.0% | |
| CTTCTAGCAGGTTCAACAGT+TGG | - | chr1.3:54189605-54189624 | MS.gene71426:intron | 45.0% | |
| GAATCTGCAACTTTGCCACA+TGG | - | chr1.3:54188205-54188224 | MS.gene71426:CDS | 45.0% | |
| GACACAGTGTGTGAAAGGAT+CGG | - | chr1.3:54189746-54189765 | MS.gene71426:intron | 45.0% | |
| GATACTAATAGCAGCTGGAG+CGG | - | chr1.3:54190564-54190583 | MS.gene71426:intron | 45.0% | |
| GCCTCTTGAAAAGGGAATAG+TGG | - | chr1.3:54189286-54189305 | MS.gene71426:intron | 45.0% | |
| GTAGGTACTCACAGAAGTGA+TGG | - | chr1.3:54190592-54190611 | MS.gene71426:intron | 45.0% | |
| GTGGTGGTTCCGCTATAAAT+TGG | - | chr1.3:54189627-54189646 | MS.gene71426:intron | 45.0% | |
| TATGCATCTGCTCACCAGAT+GGG | - | chr1.3:54190721-54190740 | MS.gene71426:intron | 45.0% | |
| TGCATGCAGTGTGATGAGAA+TGG | - | chr1.3:54189188-54189207 | MS.gene71426:intron | 45.0% | |
| TTGGGAACTTTGTTGCTGTG+TGG | - | chr1.3:54188915-54188934 | MS.gene71426:intron | 45.0% | |
| ! | AACTTTGCCACATGGTGATG+AGG | - | chr1.3:54188213-54188232 | MS.gene71426:CDS | 45.0% |
| ! | AATGACGTGGGGACATTTTC+CGG | - | chr1.3:54190216-54190235 | MS.gene71426:intron | 45.0% |
| ! | GGAACTTTTGCAACATCGGA+TGG | - | chr1.3:54189572-54189591 | MS.gene71426:intron | 45.0% |
| ! | TTAGCACCGGATGAAGATGA+AGG | + | chr1.3:54190198-54190217 | None:intergenic | 45.0% |
| !! | CAGTTCTTCTGGAATGCTTC+TGG | - | chr1.3:54186244-54186263 | MS.gene71426:CDS | 45.0% |
| !! | GATGTGGTAATTGTCGGTTC+CGG | - | chr1.3:54189410-54189429 | MS.gene71426:intron | 45.0% |
| !! | TCTACCACTCTTTTCAAGCC+AGG | - | chr1.3:54189706-54189725 | MS.gene71426:intron | 45.0% |
| !! | TGGTGTTACTTGATGAGGGA+TGG | + | chr1.3:54186281-54186300 | None:intergenic | 45.0% |
| AACCAAGCATGGGAAGCCAT+TGG | - | chr1.3:54189215-54189234 | MS.gene71426:intron | 50.0% | |
| AACCAATGGCTTCCCATGCT+TGG | + | chr1.3:54189220-54189239 | None:intergenic | 50.0% | |
| AACGACACCTCATCACCATG+TGG | + | chr1.3:54188223-54188242 | None:intergenic | 50.0% | |
| AAGTCGAATCCGGATTCCCA+AGG | + | chr1.3:54190385-54190404 | None:intergenic | 50.0% | |
| AATGCTCCTGGTCCTAGTGA+AGG | + | chr1.3:54190349-54190368 | None:intergenic | 50.0% | |
| ACCGTGATTCCTTGGGAATC+CGG | - | chr1.3:54190373-54190392 | MS.gene71426:intron | 50.0% | |
| ATGCATCTGCTCACCAGATG+GGG | - | chr1.3:54190722-54190741 | MS.gene71426:intron | 50.0% | |
| CCGACACCTTCATCTTCATC+CGG | - | chr1.3:54190189-54190208 | MS.gene71426:intron | 50.0% | |
| CGGTGTAACCGATACTTGTG+TGG | - | chr1.3:54189766-54189785 | MS.gene71426:intron | 50.0% | |
| CTAGCAGGTTCAACAGTTGG+TGG | - | chr1.3:54189608-54189627 | MS.gene71426:intron | 50.0% | |
| CTTGTCGATGCTGTGGAACA+CGG | - | chr1.3:54189944-54189963 | MS.gene71426:intron | 50.0% | |
| GAAACTCCTTCACTAGGACC+AGG | - | chr1.3:54190340-54190359 | MS.gene71426:intron | 50.0% | |
| GCTGCTGTTCTTGCAAGTTC+AGG | - | chr1.3:54189452-54189471 | MS.gene71426:intron | 50.0% | |
| GTATGCATCTGCTCACCAGA+TGG | - | chr1.3:54190720-54190739 | MS.gene71426:intron | 50.0% | |
| TCCGGATTCCCAAGGAATCA+CGG | + | chr1.3:54190377-54190396 | None:intergenic | 50.0% | |
| ! | ACATGAAGCATGGACTGCAG+CGG | - | chr1.3:54190533-54190552 | MS.gene71426:intron | 50.0% |
| ! | CCGGATGAAGATGAAGGTGT+CGG | + | chr1.3:54190192-54190211 | None:intergenic | 50.0% |
| ! | TACATGGCTTGTCGATGCTG+TGG | - | chr1.3:54189937-54189956 | MS.gene71426:intron | 50.0% |
| ! | TCATCCGGTGCTAATGACGT+GGG | - | chr1.3:54190204-54190223 | MS.gene71426:intron | 50.0% |
| ! | TTCATCCGGTGCTAATGACG+TGG | - | chr1.3:54190203-54190222 | MS.gene71426:intron | 50.0% |
| !! | GAAGGCGCGGTTGATGAAAA+TGG | - | chr1.3:54190772-54190791 | MS.gene71426:intron | 50.0% |
| !! | GTAATTGTCGGTTCCGGTTG+CGG | - | chr1.3:54189416-54189435 | MS.gene71426:intron | 50.0% |
| AATAGCAGCTGGAGCGGTTG+AGG | - | chr1.3:54190570-54190589 | MS.gene71426:intron | 55.0% | |
| CAGATGGGGAGCTGTAGGAT+AGG | - | chr1.3:54190736-54190755 | MS.gene71426:intron | 55.0% | |
| CTATCCTACAGCTCCCCATC+TGG | + | chr1.3:54190738-54190757 | None:intergenic | 55.0% | |
| TCAGGACAAAGGCTGTGGAG+AGG | - | chr1.3:54190456-54190475 | MS.gene71426:intron | 55.0% | |
| TGTCCCCACGTCATTAGCAC+CGG | + | chr1.3:54190211-54190230 | None:intergenic | 55.0% | |
| TGTGGAGAGGTGAAGAGCGA+GGG | - | chr1.3:54190469-54190488 | MS.gene71426:intron | 55.0% | |
| ! | CATCCGGTGCTAATGACGTG+GGG | - | chr1.3:54190205-54190224 | MS.gene71426:intron | 55.0% |
| ! | CATGAAGCATGGACTGCAGC+GGG | - | chr1.3:54190534-54190553 | MS.gene71426:intron | 55.0% |
| !! | GAATCGGTTTGCGCAGCAGA+AGG | - | chr1.3:54190667-54190686 | MS.gene71426:intron | 55.0% |
| !! | GCAGGTTCAACAGTTGGTGG+TGG | - | chr1.3:54189611-54189630 | MS.gene71426:intron | 55.0% |
| CTCACCAGATGGGGAGCTGT+AGG | - | chr1.3:54190731-54190750 | MS.gene71426:intron | 60.0% | |
| CTGTGGAGAGGTGAAGAGCG+AGG | - | chr1.3:54190468-54190487 | MS.gene71426:intron | 60.0% | |
| GAGAGGTGAAGAGCGAGGGT+AGG | - | chr1.3:54190473-54190492 | MS.gene71426:intron | 60.0% | |
| TGCAACTCCTCCACCGCAAC+CGG | + | chr1.3:54189432-54189451 | None:intergenic | 60.0% | |
| !! | ATTGTCGGTTCCGGTTGCGG+TGG | - | chr1.3:54189419-54189438 | MS.gene71426:intron | 60.0% |
| GCAGCTGGAGCGGTTGAGGT+AGG | - | chr1.3:54190574-54190593 | MS.gene71426:intron | 65.0% | |
| ! | ATGGACTGCAGCGGGCGCTG+AGG | - | chr1.3:54190542-54190561 | MS.gene71426:intron | 70.0% |
| ! | GTCGGTTCCGGTTGCGGTGG+AGG | - | chr1.3:54189422-54189441 | MS.gene71426:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 54186241 | 54190933 | 54186241 | ID=MS.gene71426 |
| chr1.3 | mRNA | 54186241 | 54190933 | 54186241 | ID=MS.gene71426.t1;Parent=MS.gene71426 |
| chr1.3 | exon | 54190883 | 54190933 | 54190883 | ID=MS.gene71426.t1.exon1;Parent=MS.gene71426.t1 |
| chr1.3 | CDS | 54190883 | 54190933 | 54190883 | ID=cds.MS.gene71426.t1;Parent=MS.gene71426.t1 |
| chr1.3 | exon | 54188068 | 54188340 | 54188068 | ID=MS.gene71426.t1.exon2;Parent=MS.gene71426.t1 |
| chr1.3 | CDS | 54188068 | 54188340 | 54188068 | ID=cds.MS.gene71426.t1;Parent=MS.gene71426.t1 |
| chr1.3 | exon | 54186241 | 54187977 | 54186241 | ID=MS.gene71426.t1.exon3;Parent=MS.gene71426.t1 |
| chr1.3 | CDS | 54186241 | 54187977 | 54186241 | ID=cds.MS.gene71426.t1;Parent=MS.gene71426.t1 |
| Gene Sequence |
| Protein sequence |
