Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71483.t1 | XP_003588682.1 | 98 | 494 | 10 | 0 | 1 | 494 | 1 | 494 | 2.20E-278 | 967.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71483.t1 | Q93YV6 | 72.6 | 500 | 127 | 2 | 1 | 494 | 1 | 496 | 3.8e-215 | 748.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71483.t1 | G7I6A8 | 98.0 | 494 | 10 | 0 | 1 | 494 | 1 | 494 | 1.6e-278 | 967.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47441 | MS.gene71483 | PPI |
| MS.gene71483 | MS.gene007562 | PPI |
| MS.gene044183 | MS.gene71483 | PPI |
| MS.gene79120 | MS.gene71483 | PPI |
| MS.gene71483 | MS.gene067043 | PPI |
| MS.gene029756 | MS.gene71483 | PPI |
| MS.gene71483 | MS.gene020631 | PPI |
| MS.gene045221 | MS.gene71483 | PPI |
| MS.gene71483 | MS.gene051425 | PPI |
| MS.gene71483 | MS.gene007383 | PPI |
| MS.gene71483 | MS.gene22385 | PPI |
| MS.gene71483 | MS.gene70740 | PPI |
| MS.gene71483 | MS.gene75564 | PPI |
| MS.gene25819 | MS.gene71483 | PPI |
| MS.gene71483 | MS.gene035014 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71483.t1 | MTR_1g011460 | 97.976 | 494 | 10 | 0 | 1 | 494 | 1 | 494 | 0.0 | 999 |
| MS.gene71483.t1 | MTR_3g107980 | 80.040 | 501 | 89 | 5 | 1 | 492 | 1 | 499 | 0.0 | 827 |
| MS.gene71483.t1 | MTR_4g113020 | 60.080 | 501 | 184 | 5 | 1 | 489 | 1 | 497 | 0.0 | 633 |
| MS.gene71483.t1 | MTR_6g022720 | 54.224 | 509 | 213 | 3 | 1 | 491 | 1 | 507 | 0.0 | 561 |
| MS.gene71483.t1 | MTR_3g086010 | 53.891 | 514 | 211 | 4 | 1 | 490 | 1 | 512 | 0.0 | 553 |
| MS.gene71483.t1 | MTR_3g080070 | 58.297 | 458 | 190 | 1 | 33 | 490 | 67 | 523 | 0.0 | 541 |
| MS.gene71483.t1 | MTR_1g062950 | 58.140 | 473 | 192 | 4 | 10 | 481 | 13 | 480 | 0.0 | 540 |
| MS.gene71483.t1 | MTR_4g113020 | 62.595 | 393 | 132 | 4 | 1 | 382 | 1 | 389 | 0.0 | 517 |
| MS.gene71483.t1 | MTR_1g111570 | 51.313 | 495 | 229 | 6 | 1 | 490 | 1 | 488 | 7.24e-174 | 498 |
| MS.gene71483.t1 | MTR_6g022720 | 55.025 | 398 | 160 | 2 | 1 | 380 | 1 | 397 | 3.95e-156 | 450 |
| MS.gene71483.t1 | MTR_7g102900 | 58.470 | 366 | 145 | 2 | 26 | 388 | 9 | 370 | 8.97e-147 | 425 |
| MS.gene71483.t1 | MTR_1g112940 | 41.250 | 400 | 228 | 3 | 80 | 477 | 40 | 434 | 1.56e-118 | 355 |
| MS.gene71483.t1 | MTR_7g102920 | 61.224 | 98 | 38 | 0 | 380 | 477 | 22 | 119 | 6.54e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71483.t1 | AT5G25510 | 73.054 | 501 | 123 | 3 | 1 | 494 | 1 | 496 | 0.0 | 768 |
| MS.gene71483.t1 | AT4G15415 | 57.396 | 507 | 196 | 6 | 1 | 489 | 1 | 505 | 0.0 | 580 |
| MS.gene71483.t1 | AT4G15415 | 57.396 | 507 | 196 | 6 | 1 | 489 | 1 | 505 | 0.0 | 580 |
| MS.gene71483.t1 | AT4G15415 | 57.396 | 507 | 196 | 6 | 1 | 489 | 1 | 505 | 0.0 | 580 |
| MS.gene71483.t1 | AT4G15415 | 57.396 | 507 | 196 | 6 | 1 | 489 | 1 | 505 | 0.0 | 580 |
| MS.gene71483.t1 | AT1G13460 | 65.789 | 418 | 142 | 1 | 62 | 479 | 71 | 487 | 0.0 | 573 |
| MS.gene71483.t1 | AT1G13460 | 65.789 | 418 | 142 | 1 | 62 | 479 | 71 | 487 | 0.0 | 573 |
| MS.gene71483.t1 | AT3G21650 | 54.494 | 534 | 191 | 6 | 1 | 489 | 1 | 527 | 0.0 | 572 |
| MS.gene71483.t1 | AT3G21650 | 54.494 | 534 | 191 | 6 | 1 | 489 | 1 | 527 | 0.0 | 572 |
| MS.gene71483.t1 | AT3G26020 | 57.937 | 504 | 181 | 6 | 1 | 474 | 1 | 503 | 0.0 | 569 |
| MS.gene71483.t1 | AT3G26020 | 57.937 | 504 | 181 | 6 | 1 | 474 | 1 | 503 | 0.0 | 569 |
| MS.gene71483.t1 | AT3G26020 | 57.937 | 504 | 181 | 6 | 1 | 474 | 1 | 503 | 0.0 | 569 |
| MS.gene71483.t1 | AT3G26020 | 57.937 | 504 | 181 | 6 | 1 | 474 | 1 | 503 | 0.0 | 569 |
| MS.gene71483.t1 | AT3G09880 | 56.701 | 485 | 201 | 3 | 1 | 477 | 1 | 484 | 0.0 | 540 |
| MS.gene71483.t1 | AT5G03470 | 53.086 | 486 | 213 | 3 | 1 | 475 | 1 | 482 | 0.0 | 520 |
| MS.gene71483.t1 | AT3G26030 | 52.401 | 479 | 214 | 6 | 1 | 474 | 1 | 470 | 2.73e-174 | 499 |
| MS.gene71483.t1 | AT3G26020 | 48.913 | 552 | 174 | 8 | 1 | 474 | 1 | 522 | 1.65e-168 | 486 |
| MS.gene71483.t1 | AT3G54930 | 51.198 | 459 | 221 | 2 | 21 | 478 | 38 | 494 | 6.37e-166 | 478 |
| MS.gene71483.t1 | AT3G54930 | 51.198 | 459 | 221 | 2 | 21 | 478 | 38 | 494 | 6.37e-166 | 478 |
| MS.gene71483.t1 | AT3G26020 | 49.346 | 535 | 180 | 10 | 1 | 474 | 1 | 505 | 6.96e-162 | 469 |
| MS.gene71483.t1 | AT3G26020 | 49.346 | 535 | 180 | 10 | 1 | 474 | 1 | 505 | 6.96e-162 | 469 |
| MS.gene71483.t1 | AT3G26020 | 49.346 | 535 | 180 | 10 | 1 | 474 | 1 | 505 | 6.96e-162 | 469 |
| MS.gene71483.t1 | AT4G15415 | 57.895 | 399 | 149 | 5 | 1 | 381 | 1 | 398 | 3.01e-161 | 464 |
| MS.gene71483.t1 | AT3G54930 | 49.448 | 362 | 180 | 2 | 21 | 381 | 38 | 397 | 1.17e-120 | 359 |
Find 93 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTGTCATACTAACTTTA+TGG | 0.142180 | 1.3:-9544478 | MS.gene71483:CDS |
| TGAACCTTTGGTGCCATTTA+AGG | 0.157149 | 1.3:-9546280 | MS.gene71483:CDS |
| CATTAACAGCCTACACTTTC+AGG | 0.159959 | 1.3:-9545344 | MS.gene71483:intron |
| TTTCCTGCCAGCATGGTTTC+TGG | 0.193282 | 1.3:-9546306 | MS.gene71483:CDS |
| GTTAATCGATTTCCGAATAA+AGG | 0.213531 | 1.3:+9545753 | None:intergenic |
| CCATGCCTCCTTTCGCTTCT+CGG | 0.228238 | 1.3:+9544428 | None:intergenic |
| GCATTTGGAACATCCTTAAA+TGG | 0.232790 | 1.3:+9546267 | None:intergenic |
| CTTGCACAAGCCTAAATCTT+TGG | 0.243418 | 1.3:-9545587 | MS.gene71483:CDS |
| GGGTGAATTGGAAGAAATTT+TGG | 0.250951 | 1.3:-9545431 | MS.gene71483:CDS |
| GCCAGTCTCAAACCTGTAAT+TGG | 0.271717 | 1.3:-9544387 | MS.gene71483:CDS |
| TCTTTCTGACTATTTGTTAC+TGG | 0.282188 | 1.3:+9545466 | None:intergenic |
| TTGCACAAGCCTAAATCTTT+GGG | 0.291105 | 1.3:-9545586 | MS.gene71483:CDS |
| CCACCTAATTATAGGGCTAA+TGG | 0.304137 | 1.3:-9546033 | MS.gene71483:CDS |
| ACAGCAGTATTTCCAATTAC+AGG | 0.317685 | 1.3:+9544375 | None:intergenic |
| TAAGCGGTTTGTTAAAATAC+TGG | 0.331723 | 1.3:-9545489 | MS.gene71483:CDS |
| ACACCATTAGCCCTATAATT+AGG | 0.353783 | 1.3:+9546030 | None:intergenic |
| TGAGTTAAGTTTATAACTGC+TGG | 0.354348 | 1.3:+9544546 | None:intergenic |
| GGTTTCTGGTATTGAACCTT+TGG | 0.364040 | 1.3:-9546292 | MS.gene71483:CDS |
| CAGCGCCACCCTGCGGTCGC+TGG | 0.367997 | 1.3:+9546361 | None:intergenic |
| TAATATCAGAAAGATGTTCT+TGG | 0.368168 | 1.3:-9544523 | MS.gene71483:CDS |
| TGGTGCATAGACCCTTTATT+CGG | 0.370706 | 1.3:-9545765 | MS.gene71483:CDS |
| TTAATCGATTTCCGAATAAA+GGG | 0.397324 | 1.3:+9545754 | None:intergenic |
| TAACGGGATTGCTGAGTTGT+TGG | 0.427203 | 1.3:-9545692 | MS.gene71483:CDS |
| ATAACAATGCTTGCTAGCTT+CGG | 0.430662 | 1.3:+9545511 | None:intergenic |
| GGTCATTGTTCCATAAGAAA+AGG | 0.432269 | 1.3:+9544658 | None:intergenic |
| TTGATATTCTTATCTAGTGC+TGG | 0.438360 | 1.3:+9544582 | None:intergenic |
| CGCCACCCTGCGGTCGCTGG+TGG | 0.446485 | 1.3:+9546364 | None:intergenic |
| ATCCTATGTTTGATCCTGCT+TGG | 0.447732 | 1.3:-9545975 | MS.gene71483:CDS |
| ACAGTGGAACCATGATCCTT+TGG | 0.451226 | 1.3:+9545386 | None:intergenic |
| TAGGGTTTATGGGAAGTTCA+TGG | 0.454043 | 1.3:-9545785 | MS.gene71483:CDS |
| ATCTAGTGCTGGAAATATGA+TGG | 0.458021 | 1.3:+9544593 | None:intergenic |
| AGATGTGAAAAGGAAAACTT+TGG | 0.460993 | 1.3:-9546157 | MS.gene71483:CDS |
| TCCAATTACAGGTTTGAGAC+TGG | 0.462838 | 1.3:+9544386 | None:intergenic |
| TAAAAGCCACCAGCGACCGC+AGG | 0.477797 | 1.3:-9546370 | MS.gene71483:CDS |
| CAGAAAGATGTTCTTGGAGA+TGG | 0.481131 | 1.3:-9544517 | MS.gene71483:CDS |
| GGCTGTGTTTCCTGCCAGCA+TGG | 0.481767 | 1.3:-9546313 | MS.gene71483:CDS |
| TTCAAACAATCTCTTTCTCT+AGG | 0.484649 | 1.3:+9545820 | None:intergenic |
| AGTTGCAAATGTGGCCAAGC+AGG | 0.488605 | 1.3:+9545961 | None:intergenic |
| TATTACGCAGTTCTTAGAAA+AGG | 0.492907 | 1.3:-9545536 | MS.gene71483:CDS |
| ATCAAACAATTCAAGCAACT+TGG | 0.497011 | 1.3:+9545852 | None:intergenic |
| ACATTTGATTTCACTGATCC+TGG | 0.499527 | 1.3:-9546198 | MS.gene71483:CDS |
| CTACACATTGCAAGAATAGC+AGG | 0.504754 | 1.3:+9546087 | None:intergenic |
| GTCATTGTTCCATAAGAAAA+GGG | 0.512682 | 1.3:+9544659 | None:intergenic |
| TTCTCAGCAACATTCTTACC+AGG | 0.517344 | 1.3:+9546180 | None:intergenic |
| TCATAAACAAGTTGCAAATG+TGG | 0.518027 | 1.3:+9545952 | None:intergenic |
| GCTTGAATTGTTTGATTCTG+AGG | 0.525615 | 1.3:-9545845 | MS.gene71483:CDS |
| AAGATTTAGGCTTGTGCAAG+GGG | 0.529195 | 1.3:+9545590 | None:intergenic |
| GAGTTAAGTTTATAACTGCT+GGG | 0.529706 | 1.3:+9544547 | None:intergenic |
| TTCAACGTGTCTTGATGCTA+AGG | 0.531979 | 1.3:-9545908 | MS.gene71483:CDS |
| TCTCAGTTTCAATCACGAAT+CGG | 0.533096 | 1.3:+9545719 | None:intergenic |
| ATTGAAACTGAGAAACATAA+CGG | 0.535729 | 1.3:-9545709 | MS.gene71483:CDS |
| ATTTGCTCTACCTTTGAAAG+AGG | 0.540618 | 1.3:-9545644 | MS.gene71483:CDS |
| GAAAACTGATTCAGATGGGT+CGG | 0.541158 | 1.3:-9546421 | MS.gene71483:CDS |
| TTGCTGAGAAAGATGTGAAA+AGG | 0.544023 | 1.3:-9546167 | MS.gene71483:CDS |
| AAAACTGATTCAGATGGGTC+GGG | 0.544453 | 1.3:-9546420 | MS.gene71483:CDS |
| ATTGAAACGAGCTTCTTCAT+CGG | 0.544506 | 1.3:-9546334 | MS.gene71483:CDS |
| ACATCGAAAACTGATTCAGA+TGG | 0.548086 | 1.3:-9546426 | MS.gene71483:CDS |
| AGTAACAAATAGTCAGAAAG+AGG | 0.549106 | 1.3:-9545464 | MS.gene71483:CDS |
| TTGAAACTGAGAAACATAAC+GGG | 0.549613 | 1.3:-9545708 | MS.gene71483:CDS |
| CCGAGAAGCGAAAGGAGGCA+TGG | 0.554722 | 1.3:-9544428 | MS.gene71483:CDS |
| ATAAGAATATCAAAAGCCAC+TGG | 0.557117 | 1.3:-9544572 | MS.gene71483:CDS |
| TGATGGGCAGTATCACTTGA+CGG | 0.557965 | 1.3:+9544610 | None:intergenic |
| ATACCAGAAACCATGCTGGC+AGG | 0.558392 | 1.3:+9546303 | None:intergenic |
| AAAGATTTAGGCTTGTGCAA+GGG | 0.560195 | 1.3:+9545589 | None:intergenic |
| GGTAGAGTTCCAAAGGATCA+TGG | 0.560709 | 1.3:-9545395 | MS.gene71483:CDS |
| TGCACAAGCCTAAATCTTTG+GGG | 0.562777 | 1.3:-9545585 | MS.gene71483:CDS |
| TCTAGTGCTGGAAATATGAT+GGG | 0.566737 | 1.3:+9544594 | None:intergenic |
| CAAAGATTTAGGCTTGTGCA+AGG | 0.572618 | 1.3:+9545588 | None:intergenic |
| GACTATTTCAGGTAGCTGAA+AGG | 0.579450 | 1.3:-9544683 | MS.gene71483:intron |
| GTTGATTCCCAACGTACTGC+CGG | 0.580380 | 1.3:-9546393 | MS.gene71483:CDS |
| TTATAACTGCTGGGTTCCAG+TGG | 0.581090 | 1.3:+9544556 | None:intergenic |
| CTAGCAAGCATTGTTATAAG+CGG | 0.585033 | 1.3:-9545505 | MS.gene71483:CDS |
| CATGCAGTTCATGTCATCAA+AGG | 0.587233 | 1.3:+9544342 | None:intergenic |
| CTCGGAAGCCGAGAAGCGAA+AGG | 0.595900 | 1.3:-9544436 | MS.gene71483:CDS |
| AATGGTGTTGTTGCTAGTGG+TGG | 0.597850 | 1.3:-9546015 | MS.gene71483:CDS |
| AAAAGCCACCAGCGACCGCA+GGG | 0.600230 | 1.3:-9546369 | MS.gene71483:CDS |
| TTCAATACCAGAAACCATGC+TGG | 0.603743 | 1.3:+9546299 | None:intergenic |
| TTGTCATACTAACTTTATGG+AGG | 0.605192 | 1.3:-9544475 | MS.gene71483:CDS |
| TTAACATGGTAGAGTTCCAA+AGG | 0.605900 | 1.3:-9545402 | MS.gene71483:CDS |
| ACATCCTTAAATGGCACCAA+AGG | 0.607400 | 1.3:+9546276 | None:intergenic |
| GCACAAGCCTAAATCTTTGG+GGG | 0.609126 | 1.3:-9545584 | MS.gene71483:CDS |
| TAAGAACTGCGTAATACAGA+AGG | 0.612374 | 1.3:+9545543 | None:intergenic |
| GCTAATGGTGTTGTTGCTAG+TGG | 0.615309 | 1.3:-9546018 | MS.gene71483:CDS |
| AGGAACACAAAATCTTCTTG+TGG | 0.618445 | 1.3:-9545624 | MS.gene71483:CDS |
| CATCGAAAACTGATTCAGAT+GGG | 0.628447 | 1.3:-9546425 | MS.gene71483:CDS |
| GAGCAATCAAATTTACAATG+TGG | 0.630738 | 1.3:+9544637 | None:intergenic |
| CCATTAGCCCTATAATTAGG+TGG | 0.638080 | 1.3:+9546033 | None:intergenic |
| AATCAAATGTCACACAACAA+AGG | 0.641518 | 1.3:+9546211 | None:intergenic |
| AATTACAGGTTTGAGACTGG+CGG | 0.648674 | 1.3:+9544389 | None:intergenic |
| GGAAGCCGAGAAGCGAAAGG+AGG | 0.671731 | 1.3:-9544433 | MS.gene71483:CDS |
| AATGAAGCAGCGCCACCCTG+CGG | 0.677523 | 1.3:+9546354 | None:intergenic |
| GGCCAAGCAGGATCAAACAT+AGG | 0.678457 | 1.3:+9545973 | None:intergenic |
| AGCCACCAGCGACCGCAGGG+TGG | 0.692570 | 1.3:-9546366 | MS.gene71483:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTTAAAGTAAATATAAT+TGG | + | chr1.3:9545666-9545685 | None:intergenic | 10.0% |
| !!! | ACTTTAAAGTAAATATAATT+GGG | + | chr1.3:9545665-9545684 | None:intergenic | 10.0% |
| !!! | TTTGAAAACAATTTTACATA+GGG | - | chr1.3:9545009-9545028 | MS.gene71483:intron | 15.0% |
| !! | ACTTATAATGACATATAGTT+GGG | + | chr1.3:9545699-9545718 | None:intergenic | 20.0% |
| !!! | ATGTTATTTTTCCATTCAAA+AGG | - | chr1.3:9545549-9545568 | MS.gene71483:CDS | 20.0% |
| !!! | GTTTGAAAACAATTTTACAT+AGG | - | chr1.3:9545008-9545027 | MS.gene71483:intron | 20.0% |
| ! | ACCATGTATTATACTTTCAA+GGG | + | chr1.3:9545725-9545744 | None:intergenic | 25.0% |
| ! | ATCTTGTCATACTAACTTTA+TGG | - | chr1.3:9546334-9546353 | MS.gene71483:CDS | 25.0% |
| ! | ATTGAAACTGAGAAACATAA+CGG | - | chr1.3:9545103-9545122 | MS.gene71483:intron | 25.0% |
| ! | CAACTATATGTCATTATAAG+TGG | - | chr1.3:9545698-9545717 | MS.gene71483:CDS | 25.0% |
| ! | CACTTATAATGACATATAGT+TGG | + | chr1.3:9545700-9545719 | None:intergenic | 25.0% |
| ! | TAATATCAGAAAGATGTTCT+TGG | - | chr1.3:9546289-9546308 | MS.gene71483:CDS | 25.0% |
| !! | AATACATGGTGAATCATTTT+GGG | - | chr1.3:9545735-9545754 | MS.gene71483:CDS | 25.0% |
| !! | ACAATTTTACATAGGGTTTA+TGG | - | chr1.3:9545016-9545035 | MS.gene71483:intron | 25.0% |
| !! | AGTTTTTCCACCTAATTATA+GGG | - | chr1.3:9544772-9544791 | MS.gene71483:intron | 25.0% |
| !! | CAATTTTACATAGGGTTTAT+GGG | - | chr1.3:9545017-9545036 | MS.gene71483:intron | 25.0% |
| !! | TAATACATGGTGAATCATTT+TGG | - | chr1.3:9545734-9545753 | MS.gene71483:CDS | 25.0% |
| !! | TTAATCGATTTCCGAATAAA+GGG | + | chr1.3:9545061-9545080 | None:intergenic | 25.0% |
| !!! | AATTTTGGAAGCAATTAACA+TGG | - | chr1.3:9545396-9545415 | MS.gene71483:CDS | 25.0% |
| !!! | AGTTGGATTTTAATCTATTC+TGG | - | chr1.3:9545850-9545869 | MS.gene71483:CDS | 25.0% |
| !!! | ATTCTTTTTTCTGTTCAACA+TGG | - | chr1.3:9546107-9546126 | MS.gene71483:CDS | 25.0% |
| !!! | TTTTAATCTATTCTGGAATG+AGG | - | chr1.3:9545857-9545876 | MS.gene71483:CDS | 25.0% |
| AATCAAATGTCACACAACAA+AGG | + | chr1.3:9544604-9544623 | None:intergenic | 30.0% | |
| AGATGTGAAAAGGAAAACTT+TGG | - | chr1.3:9544655-9544674 | MS.gene71483:CDS | 30.0% | |
| AGTAACAAATAGTCAGAAAG+AGG | - | chr1.3:9545348-9545367 | MS.gene71483:CDS | 30.0% | |
| ATAAGAATATCAAAAGCCAC+TGG | - | chr1.3:9546240-9546259 | MS.gene71483:CDS | 30.0% | |
| ATAATGACATATAGTTGGGT+AGG | + | chr1.3:9545695-9545714 | None:intergenic | 30.0% | |
| ATCAAACAATTCAAGCAACT+TGG | + | chr1.3:9544963-9544982 | None:intergenic | 30.0% | |
| CACCATGTATTATACTTTCA+AGG | + | chr1.3:9545726-9545745 | None:intergenic | 30.0% | |
| GAGCAATCAAATTTACAATG+TGG | + | chr1.3:9546178-9546197 | None:intergenic | 30.0% | |
| GAGTTAAGTTTATAACTGCT+GGG | + | chr1.3:9546268-9546287 | None:intergenic | 30.0% | |
| GTCATTGTTCCATAAGAAAA+GGG | + | chr1.3:9546156-9546175 | None:intergenic | 30.0% | |
| TAAAAACTGCCAAAACACTA+GGG | + | chr1.3:9546040-9546059 | None:intergenic | 30.0% | |
| TATTACGCAGTTCTTAGAAA+AGG | - | chr1.3:9545276-9545295 | MS.gene71483:intron | 30.0% | |
| TCATAAACAAGTTGCAAATG+TGG | + | chr1.3:9544863-9544882 | None:intergenic | 30.0% | |
| TGAGTTAAGTTTATAACTGC+TGG | + | chr1.3:9546269-9546288 | None:intergenic | 30.0% | |
| TTAAAAACTGCCAAAACACT+AGG | + | chr1.3:9546041-9546060 | None:intergenic | 30.0% | |
| TTCAAACAATCTCTTTCTCT+AGG | + | chr1.3:9544995-9545014 | None:intergenic | 30.0% | |
| TTGAAACTGAGAAACATAAC+GGG | - | chr1.3:9545104-9545123 | MS.gene71483:intron | 30.0% | |
| TTGATATTCTTATCTAGTGC+TGG | + | chr1.3:9546233-9546252 | None:intergenic | 30.0% | |
| TTGTCAATCTTTATGCACTT+TGG | - | chr1.3:9546006-9546025 | MS.gene71483:CDS | 30.0% | |
| TTGTCATACTAACTTTATGG+AGG | - | chr1.3:9546337-9546356 | MS.gene71483:CDS | 30.0% | |
| ! | AAGTTCATCTTTTCAGCATT+TGG | + | chr1.3:9544563-9544582 | None:intergenic | 30.0% |
| ! | ATACATGGTGAATCATTTTG+GGG | - | chr1.3:9545736-9545755 | MS.gene71483:CDS | 30.0% |
| ! | ATTTTGTGTTCCTCTTTCAA+AGG | + | chr1.3:9545181-9545200 | None:intergenic | 30.0% |
| ! | GAGTTTTTCCACCTAATTAT+AGG | - | chr1.3:9544771-9544790 | MS.gene71483:intron | 30.0% |
| ! | GTTAATCGATTTCCGAATAA+AGG | + | chr1.3:9545062-9545081 | None:intergenic | 30.0% |
| ! | TCCCTTGAAAGTATAATACA+TGG | - | chr1.3:9545721-9545740 | MS.gene71483:CDS | 30.0% |
| ! | TCTTTCTGACTATTTGTTAC+TGG | + | chr1.3:9545349-9545368 | None:intergenic | 30.0% |
| !! | ACAATTTTACCTGAAAGTGT+AGG | + | chr1.3:9545480-9545499 | None:intergenic | 30.0% |
| !! | GGATGAAGCAATTTTAATCT+CGG | - | chr1.3:9546358-9546377 | MS.gene71483:CDS | 30.0% |
| !! | TAAGCGGTTTGTTAAAATAC+TGG | - | chr1.3:9545323-9545342 | MS.gene71483:intron | 30.0% |
| AAAGATTTAGGCTTGTGCAA+GGG | + | chr1.3:9545226-9545245 | None:intergenic | 35.0% | |
| ACACCATTAGCCCTATAATT+AGG | + | chr1.3:9544785-9544804 | None:intergenic | 35.0% | |
| ACAGCAGTATTTCCAATTAC+AGG | + | chr1.3:9546440-9546459 | None:intergenic | 35.0% | |
| ACCATGCAAACTATAGATCA+AGG | + | chr1.3:9545587-9545606 | None:intergenic | 35.0% | |
| AGGAACACAAAATCTTCTTG+TGG | - | chr1.3:9545188-9545207 | MS.gene71483:intron | 35.0% | |
| ATGAACAGCTCATCTTATCA+GGG | + | chr1.3:9545800-9545819 | None:intergenic | 35.0% | |
| ATTGAAACGAGCTTCTTCAT+CGG | - | chr1.3:9544478-9544497 | MS.gene71483:CDS | 35.0% | |
| GCAAACTATAGATCAAGGAA+TGG | + | chr1.3:9545582-9545601 | None:intergenic | 35.0% | |
| GCTTGAATTGTTTGATTCTG+AGG | - | chr1.3:9544967-9544986 | MS.gene71483:intron | 35.0% | |
| GGTCATTGTTCCATAAGAAA+AGG | + | chr1.3:9546157-9546176 | None:intergenic | 35.0% | |
| TAAGAACTGCGTAATACAGA+AGG | + | chr1.3:9545272-9545291 | None:intergenic | 35.0% | |
| TCTCAGTTTCAATCACGAAT+CGG | + | chr1.3:9545096-9545115 | None:intergenic | 35.0% | |
| TTAACATGGTAGAGTTCCAA+AGG | - | chr1.3:9545410-9545429 | MS.gene71483:CDS | 35.0% | |
| TTCTTAAAACTCAACGATCG+TGG | - | chr1.3:9545920-9545939 | MS.gene71483:CDS | 35.0% | |
| TTGCACAAGCCTAAATCTTT+GGG | - | chr1.3:9545226-9545245 | MS.gene71483:intron | 35.0% | |
| TTGCTGAGAAAGATGTGAAA+AGG | - | chr1.3:9544645-9544664 | MS.gene71483:CDS | 35.0% | |
| ! | AAATTTTCAACAAGCTTCCC+CGG | - | chr1.3:9544360-9544379 | MS.gene71483:CDS | 35.0% |
| ! | AATCAGTTTTCGATGTCTTC+CGG | + | chr1.3:9544382-9544401 | None:intergenic | 35.0% |
| ! | ACATCGAAAACTGATTCAGA+TGG | - | chr1.3:9544386-9544405 | MS.gene71483:CDS | 35.0% |
| ! | ACATTTGATTTCACTGATCC+TGG | - | chr1.3:9544614-9544633 | MS.gene71483:CDS | 35.0% |
| ! | ATAACAATGCTTGCTAGCTT+CGG | + | chr1.3:9545304-9545323 | None:intergenic | 35.0% |
| ! | ATCTAGTGCTGGAAATATGA+TGG | + | chr1.3:9546222-9546241 | None:intergenic | 35.0% |
| ! | ATGGATCTGATCCTTTTGAA+TGG | + | chr1.3:9545563-9545582 | None:intergenic | 35.0% |
| ! | ATTTGCTCTACCTTTGAAAG+AGG | - | chr1.3:9545168-9545187 | MS.gene71483:intron | 35.0% |
| ! | CAGAAAGAGGTGATGTTTTT+GGG | - | chr1.3:9545361-9545380 | MS.gene71483:CDS | 35.0% |
| ! | CAGCACTTTTACTCAAACTA+AGG | + | chr1.3:9545977-9545996 | None:intergenic | 35.0% |
| ! | CATCGAAAACTGATTCAGAT+GGG | - | chr1.3:9544387-9544406 | MS.gene71483:CDS | 35.0% |
| ! | CTAGCAAGCATTGTTATAAG+CGG | - | chr1.3:9545307-9545326 | MS.gene71483:intron | 35.0% |
| ! | GCATTTGGAACATCCTTAAA+TGG | + | chr1.3:9544548-9544567 | None:intergenic | 35.0% |
| ! | GGGTGAATTGGAAGAAATTT+TGG | - | chr1.3:9545381-9545400 | MS.gene71483:CDS | 35.0% |
| ! | TCAGAAAGAGGTGATGTTTT+TGG | - | chr1.3:9545360-9545379 | MS.gene71483:CDS | 35.0% |
| ! | TCCAACTTGAGTTTTCAAAC+AGG | + | chr1.3:9545837-9545856 | None:intergenic | 35.0% |
| ! | TCCTTGATCTATAGTTTGCA+TGG | - | chr1.3:9545583-9545602 | MS.gene71483:CDS | 35.0% |
| ! | TCTAGTGCTGGAAATATGAT+GGG | + | chr1.3:9546221-9546240 | None:intergenic | 35.0% |
| ! | TGTTCAACATGGACTATTTC+AGG | - | chr1.3:9546118-9546137 | MS.gene71483:CDS | 35.0% |
| ! | TTGAGTTTTCAAACAGGCAA+AGG | + | chr1.3:9545831-9545850 | None:intergenic | 35.0% |
| !!! | GGTTGAACTTGTTGATTTTG+TGG | - | chr1.3:9544676-9544695 | MS.gene71483:intron | 35.0% |
| AAGATTTAGGCTTGTGCAAG+GGG | + | chr1.3:9545225-9545244 | None:intergenic | 40.0% | |
| AAGTAGACCCCCAAAGATTT+AGG | + | chr1.3:9545238-9545257 | None:intergenic | 40.0% | |
| ACATCCTTAAATGGCACCAA+AGG | + | chr1.3:9544539-9544558 | None:intergenic | 40.0% | |
| ATCCTATGTTTGATCCTGCT+TGG | - | chr1.3:9544837-9544856 | MS.gene71483:intron | 40.0% | |
| CAAAGATTTAGGCTTGTGCA+AGG | + | chr1.3:9545227-9545246 | None:intergenic | 40.0% | |
| CAGAAAGATGTTCTTGGAGA+TGG | - | chr1.3:9546295-9546314 | MS.gene71483:CDS | 40.0% | |
| CATTAACAGCCTACACTTTC+AGG | - | chr1.3:9545468-9545487 | MS.gene71483:CDS | 40.0% | |
| CCACCTAATTATAGGGCTAA+TGG | - | chr1.3:9544779-9544798 | MS.gene71483:intron | 40.0% | |
| CCATTAGCCCTATAATTAGG+TGG | + | chr1.3:9544782-9544801 | None:intergenic | 40.0% | |
| CTACACATTGCAAGAATAGC+AGG | + | chr1.3:9544728-9544747 | None:intergenic | 40.0% | |
| CTTGCACAAGCCTAAATCTT+TGG | - | chr1.3:9545225-9545244 | MS.gene71483:intron | 40.0% | |
| GAGATTTGCAGTTGCTTCAT+TGG | - | chr1.3:9545758-9545777 | MS.gene71483:CDS | 40.0% | |
| GATGAACAGCTCATCTTATC+AGG | + | chr1.3:9545801-9545820 | None:intergenic | 40.0% | |
| GCCTGTTTGAAAACTCAAGT+TGG | - | chr1.3:9545833-9545852 | MS.gene71483:CDS | 40.0% | |
| TAGGGTTTATGGGAAGTTCA+TGG | - | chr1.3:9545027-9545046 | MS.gene71483:intron | 40.0% | |
| TGCACAAGCCTAAATCTTTG+GGG | - | chr1.3:9545227-9545246 | MS.gene71483:intron | 40.0% | |
| TGGTGCATAGACCCTTTATT+CGG | - | chr1.3:9545047-9545066 | MS.gene71483:intron | 40.0% | |
| TTCAACGTGTCTTGATGCTA+AGG | - | chr1.3:9544904-9544923 | MS.gene71483:intron | 40.0% | |
| TTCAATACCAGAAACCATGC+TGG | + | chr1.3:9544516-9544535 | None:intergenic | 40.0% | |
| TTCTCAGCAACATTCTTACC+AGG | + | chr1.3:9544635-9544654 | None:intergenic | 40.0% | |
| ! | AAAACTGATTCAGATGGGTC+GGG | - | chr1.3:9544392-9544411 | MS.gene71483:CDS | 40.0% |
| ! | AATTACAGGTTTGAGACTGG+CGG | + | chr1.3:9546426-9546445 | None:intergenic | 40.0% |
| ! | ATCAGTTTTCGATGTCTTCC+GGG | + | chr1.3:9544381-9544400 | None:intergenic | 40.0% |
| ! | CTGAAAGGACCCTTTTCTTA+TGG | - | chr1.3:9546144-9546163 | MS.gene71483:CDS | 40.0% |
| ! | CTGAGTTGTTGGAGATTTTC+GGG | - | chr1.3:9545131-9545150 | MS.gene71483:intron | 40.0% |
| ! | GAAAACTGATTCAGATGGGT+CGG | - | chr1.3:9544391-9544410 | MS.gene71483:CDS | 40.0% |
| ! | GACTATTTCAGGTAGCTGAA+AGG | - | chr1.3:9546129-9546148 | MS.gene71483:CDS | 40.0% |
| ! | GCTGAGTTGTTGGAGATTTT+CGG | - | chr1.3:9545130-9545149 | MS.gene71483:intron | 40.0% |
| ! | TCCAATTACAGGTTTGAGAC+TGG | + | chr1.3:9546429-9546448 | None:intergenic | 40.0% |
| !! | ATTTTCGGGAGTGTGATTAG+TGG | - | chr1.3:9545145-9545164 | MS.gene71483:intron | 40.0% |
| !! | GGTTTCTGGTATTGAACCTT+TGG | - | chr1.3:9544520-9544539 | MS.gene71483:CDS | 40.0% |
| !! | TGAACCTTTGGTGCCATTTA+AGG | - | chr1.3:9544532-9544551 | MS.gene71483:CDS | 40.0% |
| !!! | CTTGTTGATTTTGTGGCTTG+TGG | - | chr1.3:9544683-9544702 | MS.gene71483:intron | 40.0% |
| !!! | GCACTTTTTCCCTAGTGTTT+TGG | - | chr1.3:9546028-9546047 | MS.gene71483:CDS | 40.0% |
| !!! | GGTGATGTTTTTGGGTGAAT+TGG | - | chr1.3:9545369-9545388 | MS.gene71483:CDS | 40.0% |
| !!! | TCATGGTTCCACTGTTTTTG+CGG | - | chr1.3:9545434-9545453 | MS.gene71483:CDS | 40.0% |
| ACAGTGGAACCATGATCCTT+TGG | + | chr1.3:9545429-9545448 | None:intergenic | 45.0% | |
| CAACGATCGTGGAATCTCTA+TGG | - | chr1.3:9545931-9545950 | MS.gene71483:CDS | 45.0% | |
| GCACAAGCCTAAATCTTTGG+GGG | - | chr1.3:9545228-9545247 | MS.gene71483:intron | 45.0% | |
| GCCAGTCTCAAACCTGTAAT+TGG | - | chr1.3:9546425-9546444 | MS.gene71483:CDS | 45.0% | |
| GGTAGAGTTCCAAAGGATCA+TGG | - | chr1.3:9545417-9545436 | MS.gene71483:CDS | 45.0% | |
| TAACGGGATTGCTGAGTTGT+TGG | - | chr1.3:9545120-9545139 | MS.gene71483:intron | 45.0% | |
| TTATAACTGCTGGGTTCCAG+TGG | + | chr1.3:9546259-9546278 | None:intergenic | 45.0% | |
| ! | TCAGTTTTCGATGTCTTCCG+GGG | + | chr1.3:9544380-9544399 | None:intergenic | 45.0% |
| ! | TGATGGGCAGTATCACTTGA+CGG | + | chr1.3:9546205-9546224 | None:intergenic | 45.0% |
| !! | AATGGTGTTGTTGCTAGTGG+TGG | - | chr1.3:9544797-9544816 | MS.gene71483:intron | 45.0% |
| !! | GCTAATGGTGTTGTTGCTAG+TGG | - | chr1.3:9544794-9544813 | MS.gene71483:intron | 45.0% |
| !!! | GTTCCACTGTTTTTGCGGAT+CGG | - | chr1.3:9545439-9545458 | MS.gene71483:CDS | 45.0% |
| !!! | TTCCACTGTTTTTGCGGATC+GGG | - | chr1.3:9545440-9545459 | MS.gene71483:CDS | 45.0% |
| AGTTGCAAATGTGGCCAAGC+AGG | + | chr1.3:9544854-9544873 | None:intergenic | 50.0% | |
| ATACCAGAAACCATGCTGGC+AGG | + | chr1.3:9544512-9544531 | None:intergenic | 50.0% | |
| GGCCAAGCAGGATCAAACAT+AGG | + | chr1.3:9544842-9544861 | None:intergenic | 50.0% | |
| TTTCCTGCCAGCATGGTTTC+TGG | - | chr1.3:9544506-9544525 | MS.gene71483:CDS | 50.0% | |
| ! | GCTTTTACCGGCAGTACGTT+GGG | + | chr1.3:9544429-9544448 | None:intergenic | 50.0% |
| ! | GTTGATTCCCAACGTACTGC+CGG | - | chr1.3:9544419-9544438 | MS.gene71483:CDS | 50.0% |
| CACCCGATCCGCAAAAACAG+TGG | + | chr1.3:9545445-9545464 | None:intergenic | 55.0% | |
| CCATGCCTCCTTTCGCTTCT+CGG | + | chr1.3:9546387-9546406 | None:intergenic | 55.0% | |
| ! | GGCTTTTACCGGCAGTACGT+TGG | + | chr1.3:9544430-9544449 | None:intergenic | 55.0% |
| AAAAGCCACCAGCGACCGCA+GGG | - | chr1.3:9544443-9544462 | MS.gene71483:CDS | 60.0% | |
| AATGAAGCAGCGCCACCCTG+CGG | + | chr1.3:9544461-9544480 | None:intergenic | 60.0% | |
| CCGAGAAGCGAAAGGAGGCA+TGG | - | chr1.3:9546384-9546403 | MS.gene71483:CDS | 60.0% | |
| CTCGGAAGCCGAGAAGCGAA+AGG | - | chr1.3:9546376-9546395 | MS.gene71483:CDS | 60.0% | |
| GGAAGCCGAGAAGCGAAAGG+AGG | - | chr1.3:9546379-9546398 | MS.gene71483:CDS | 60.0% | |
| GGCTGTGTTTCCTGCCAGCA+TGG | - | chr1.3:9544499-9544518 | MS.gene71483:CDS | 60.0% | |
| TAAAAGCCACCAGCGACCGC+AGG | - | chr1.3:9544442-9544461 | MS.gene71483:CDS | 60.0% | |
| ! | CGGTCGCTGGTGGCTTTTAC+CGG | + | chr1.3:9544441-9544460 | None:intergenic | 60.0% |
| AGCCACCAGCGACCGCAGGG+TGG | - | chr1.3:9544446-9544465 | MS.gene71483:CDS | 75.0% | |
| ! | CAGCGCCACCCTGCGGTCGC+TGG | + | chr1.3:9544454-9544473 | None:intergenic | 80.0% |
| ! | CGCCACCCTGCGGTCGCTGG+TGG | + | chr1.3:9544451-9544470 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 9544350 | 9546484 | 9544350 | ID=MS.gene71483 |
| chr1.3 | mRNA | 9544350 | 9546484 | 9544350 | ID=MS.gene71483.t1;Parent=MS.gene71483 |
| chr1.3 | exon | 9545345 | 9546484 | 9545345 | ID=MS.gene71483.t1.exon1;Parent=MS.gene71483.t1 |
| chr1.3 | CDS | 9545345 | 9546484 | 9545345 | ID=cds.MS.gene71483.t1;Parent=MS.gene71483.t1 |
| chr1.3 | exon | 9544350 | 9544694 | 9544350 | ID=MS.gene71483.t1.exon2;Parent=MS.gene71483.t1 |
| chr1.3 | CDS | 9544350 | 9544694 | 9544350 | ID=cds.MS.gene71483.t1;Parent=MS.gene71483.t1 |
| Gene Sequence |
| Protein sequence |
