AlfalfaGEDB | MS.gene72033

M. sativa cultivar XinJiangDaYe / MS.gene72033

KEGG: -
GO: -
PFAM: PF10604.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72033.t1	GAU14248.1	75.4	167	37	3	1	164	1	166	4.50E-69	270.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72033.t1	A0A2K3NXU4	73.7	167	41	2	1	164	1	167	2.7e-68	267.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene055124	MS.gene72033	0.801119	1.05E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene53620	MS.gene72033	PPI
MS.gene64289	MS.gene72033	PPI
MS.gene72033	MS.gene064976	PPI
MS.gene72033	MS.gene94983	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72033.t1	MTR_3g109880	60.335	179	55	5	1	169	1	173	5.68e-69	207
MS.gene72033.t1	MTR_6g088445	42.262	168	81	3	9	170	10	167	2.66e-38	129
MS.gene72033.t1	MTR_6g088475	43.038	158	74	3	9	160	10	157	4.41e-36	123
MS.gene72033.t1	MTR_1g046660	33.908	174	105	4	3	170	2	171	2.03e-24	94.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72033.t1	AT4G32870	47.239	163	76	4	1	161	1	155	9.19e-49	155
MS.gene72033.t1	AT2G25770	36.242	149	81	4	1	144	1	140	7.08e-31	110
MS.gene72033.t1	AT2G25770	36.242	149	81	4	1	144	1	140	7.08e-31	110

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Find 54 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCACCGCTGAGGTAAG+AGG	0.507470	3.4:-95496839	MS.gene72033:CDS
AAATTGTTGATAACAGTATG+GGG	0.598578	3.4:-95496604	MS.gene72033:CDS
AACCCACTCAGAAGTTGGAT+TGG	0.500294	3.4:+95496676	None:intergenic
AATAAGCCAACAAAATGGGA+AGG	0.626979	3.4:-95496863	MS.gene72033:CDS
ACTGTTATCAACAATTTCAT+AGG	0.476144	3.4:+95496610	None:intergenic
AGCGAGATCAATAATGGGAG+AGG	0.553005	3.4:-95496888	None:intergenic
AGGAAAATAAGCCAACAAAA+TGG	0.322964	3.4:-95496868	MS.gene72033:CDS
AGGTTGTATGATCGAATGGG+AGG	0.648114	3.4:-95496507	MS.gene72033:CDS
AGTTCCTCTTACCTCAGCGG+TGG	0.616369	3.4:+95496835	None:intergenic
ATAGGTCAAACAACGTTGGA+TGG	0.513283	3.4:+95496628	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGAAAATAAGCCAACAAAA+TGG	-	chr3.4:95496380-95496399	MS.gene72033:CDS	30.0%
CAAGCTTATAACAATCCATT+GGG	+	chr3.4:95496495-95496514	None:intergenic	30.0%
GGAAAATAAGCCAACAAAAT+GGG	-	chr3.4:95496381-95496400	MS.gene72033:CDS	30.0%
TCAAGCTTATAACAATCCAT+TGG	+	chr3.4:95496496-95496515	None:intergenic	30.0%
TGGATTGTTATAAGCTTGAA+GGG	-	chr3.4:95496497-95496516	MS.gene72033:CDS	30.0%
AATAAGCCAACAAAATGGGA+AGG	-	chr3.4:95496385-95496404	MS.gene72033:CDS	35.0%
ATTTCTGTAACCTACACAAG+TGG	-	chr3.4:95496467-95496486	MS.gene72033:CDS	35.0%
TAGCTAGTCAAAGTTTGTGT+GGG	-	chr3.4:95496866-95496885	MS.gene72033:CDS	35.0%
TATAAGCTTGAAGGGATTGA+AGG	-	chr3.4:95496505-95496524	MS.gene72033:CDS	35.0%
TATAGTATGGCAAGTGTTAG+AGG	-	chr3.4:95496444-95496463	MS.gene72033:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	95496373	95496897	95496373	ID=MS.gene72033
chr3.4	mRNA	95496373	95496897	95496373	ID=MS.gene72033.t1;Parent=MS.gene72033
chr3.4	exon	95496373	95496897	95496373	ID=MS.gene72033.t1.exon1;Parent=MS.gene72033.t1
chr3.4	CDS	95496373	95496897	95496373	ID=cds.MS.gene72033.t1;Parent=MS.gene72033.t1

Gene Sequence

>MS.gene72033

ATGGGAGAGGAAAATAAGCCAACAAAATGGGAAGGTAAAGCCACCGCTGAGGTAAGAGGAACTGAGGAGGATATAGTATGGCAAGTGTTAGAGGATTTCTGTAACCTACACAAGTGGCTCCCAATGGATTGTTATAAGCTTGAAGGGATTGAAGGTCAACCTGGTCTCGTTCGTTATTGTGCTTTCACAAAAAAGGGTGCCAATCCAACTTCTGAGTGGGTTAAAGAGAAGCTGCTGAAAATTGATCCCATCCAACGTTGTTTGACCTATGAAATTGTTGATAACAGTATGGGGTTTAAGAATTACGTGGCTATAATGAAAGTATTGCCATTGCCAATCAGCGGCGTTGATGATGATGCTAAACGTGTAGGTTGTATGATCGAATGGGAGGGTGTTTGTGATCCGGTGGAAGGGTGGACAGTTCAAGATTTGAATTCTTTCATTGGAAACGTTATTAAGGGCATGGCCAACAAAATTGAGCTTACATATTCTTTAGCTAGTCAAAGTTTGTGTGGGAGCTCCTAA

Protein sequence

>MS.gene72033.t1

MGEENKPTKWEGKATAEVRGTEEDIVWQVLEDFCNLHKWLPMDCYKLEGIEGQPGLVRYCAFTKKGANPTSEWVKEKLLKIDPIQRCLTYEIVDNSMGFKNYVAIMKVLPLPISGVDDDAKRVGCMIEWEGVCDPVEGWTVQDLNSFIGNVIKGMANKIELTYSLASQSLCGSS