Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72300.t1 | XP_013467901.1 | 59.1 | 567 | 197 | 9 | 21 | 564 | 6 | 560 | 4.40E-166 | 594.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72300.t1 | Q9FLH8 | 70.8 | 325 | 91 | 2 | 239 | 562 | 13 | 334 | 6.5e-126 | 452.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72300.t1 | A0A072VKK1 | 59.1 | 567 | 197 | 9 | 21 | 564 | 6 | 560 | 3.2e-166 | 594.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28335 | MS.gene72300 | PPI |
| MS.gene46881 | MS.gene72300 | PPI |
| MS.gene72300 | MS.gene003877 | PPI |
| MS.gene85276 | MS.gene72300 | PPI |
| MS.gene72300 | MS.gene052011 | PPI |
| MS.gene72300 | MS.gene98726 | PPI |
| MS.gene032177 | MS.gene72300 | PPI |
| MS.gene056386 | MS.gene72300 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72300.t1 | MTR_1g057810 | 59.337 | 573 | 186 | 11 | 21 | 564 | 6 | 560 | 0.0 | 587 |
| MS.gene72300.t1 | MTR_1g101950 | 83.578 | 341 | 51 | 3 | 229 | 568 | 4 | 340 | 0.0 | 567 |
| MS.gene72300.t1 | MTR_1g105150 | 57.243 | 573 | 184 | 12 | 21 | 564 | 6 | 546 | 0.0 | 550 |
| MS.gene72300.t1 | MTR_6g089480 | 78.549 | 317 | 64 | 2 | 256 | 571 | 1 | 314 | 1.11e-176 | 501 |
| MS.gene72300.t1 | MTR_1g069490 | 62.471 | 429 | 130 | 6 | 142 | 568 | 2 | 401 | 7.82e-172 | 493 |
| MS.gene72300.t1 | MTR_6g089480 | 79.273 | 275 | 53 | 2 | 256 | 529 | 1 | 272 | 5.39e-152 | 437 |
| MS.gene72300.t1 | MTR_6g089480 | 79.853 | 273 | 51 | 2 | 256 | 527 | 1 | 270 | 9.98e-152 | 436 |
| MS.gene72300.t1 | MTR_1g069745 | 77.083 | 288 | 54 | 2 | 284 | 571 | 16 | 291 | 4.66e-148 | 428 |
| MS.gene72300.t1 | MTR_5g079460 | 66.369 | 336 | 106 | 5 | 232 | 564 | 48 | 379 | 1.01e-144 | 423 |
| MS.gene72300.t1 | MTR_1g076850 | 57.862 | 318 | 128 | 4 | 249 | 565 | 8 | 320 | 7.74e-126 | 372 |
| MS.gene72300.t1 | MTR_7g075860 | 59.248 | 319 | 124 | 3 | 249 | 564 | 41 | 356 | 1.53e-125 | 373 |
| MS.gene72300.t1 | MTR_4g067310 | 58.951 | 324 | 127 | 4 | 247 | 569 | 13 | 331 | 8.84e-125 | 370 |
| MS.gene72300.t1 | MTR_2g098950 | 56.587 | 334 | 135 | 5 | 233 | 565 | 2 | 326 | 1.05e-124 | 370 |
| MS.gene72300.t1 | MTR_1g054730 | 53.704 | 324 | 110 | 3 | 242 | 565 | 104 | 387 | 1.03e-96 | 300 |
| MS.gene72300.t1 | MTR_1g054730 | 54.795 | 73 | 21 | 2 | 67 | 127 | 86 | 158 | 1.02e-13 | 73.6 |
| MS.gene72300.t1 | MTR_0046s0180 | 80.583 | 103 | 20 | 0 | 463 | 565 | 7 | 109 | 8.38e-52 | 173 |
| MS.gene72300.t1 | MTR_8g096570 | 50.617 | 162 | 66 | 3 | 51 | 199 | 72 | 232 | 1.56e-39 | 154 |
| MS.gene72300.t1 | MTR_5g044990 | 27.988 | 343 | 214 | 5 | 249 | 560 | 210 | 550 | 1.01e-35 | 141 |
| MS.gene72300.t1 | MTR_4g019165 | 29.096 | 354 | 208 | 7 | 249 | 559 | 93 | 446 | 2.24e-33 | 133 |
| MS.gene72300.t1 | MTR_1g069480 | 52.212 | 113 | 38 | 5 | 83 | 180 | 4 | 115 | 9.34e-22 | 91.3 |
| MS.gene72300.t1 | MTR_0046s0210 | 38.750 | 160 | 62 | 6 | 175 | 305 | 1 | 153 | 1.26e-16 | 77.8 |
| MS.gene72300.t1 | MTR_1g071270 | 39.695 | 131 | 43 | 5 | 127 | 222 | 10 | 139 | 7.43e-13 | 67.4 |
| MS.gene72300.t1 | MTR_1g071290 | 62.791 | 43 | 16 | 0 | 85 | 127 | 7 | 49 | 2.04e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72300.t1 | AT5G51830 | 70.769 | 325 | 91 | 2 | 239 | 562 | 13 | 334 | 3.86e-161 | 463 |
| MS.gene72300.t1 | AT5G51830 | 70.769 | 325 | 91 | 2 | 239 | 562 | 13 | 334 | 3.86e-161 | 463 |
| MS.gene72300.t1 | AT1G66430 | 62.327 | 361 | 125 | 5 | 218 | 571 | 28 | 384 | 1.35e-150 | 438 |
| MS.gene72300.t1 | AT4G10260 | 60.450 | 311 | 117 | 4 | 249 | 558 | 6 | 311 | 6.28e-126 | 373 |
| MS.gene72300.t1 | AT1G06030 | 56.098 | 328 | 138 | 3 | 239 | 565 | 1 | 323 | 5.23e-124 | 368 |
| MS.gene72300.t1 | AT2G31390 | 56.790 | 324 | 134 | 4 | 243 | 565 | 3 | 321 | 4.09e-122 | 363 |
| MS.gene72300.t1 | AT3G59480 | 56.250 | 320 | 134 | 4 | 244 | 562 | 5 | 319 | 2.71e-120 | 358 |
| MS.gene72300.t1 | AT1G06020 | 55.799 | 319 | 135 | 3 | 248 | 565 | 9 | 322 | 2.25e-119 | 357 |
| MS.gene72300.t1 | AT1G50390 | 46.471 | 170 | 60 | 1 | 396 | 565 | 1 | 139 | 4.69e-42 | 148 |
| MS.gene72300.t1 | AT3G54090 | 30.226 | 354 | 203 | 8 | 249 | 559 | 103 | 455 | 2.34e-36 | 142 |
| MS.gene72300.t1 | AT1G69200 | 27.744 | 328 | 205 | 4 | 249 | 545 | 206 | 532 | 1.05e-33 | 136 |
| MS.gene72300.t1 | AT5G63540 | 43.258 | 178 | 84 | 4 | 35 | 199 | 87 | 260 | 4.56e-31 | 128 |
| MS.gene72300.t1 | AT5G63540 | 43.258 | 178 | 84 | 4 | 35 | 199 | 87 | 260 | 7.96e-31 | 127 |
Find 119 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTGGAGATTCGTTAAA+TGG | 0.186789 | 1.4:-49913443 | MS.gene72300:CDS |
| TAGCGAAATATAATGCATTT+TGG | 0.194932 | 1.4:+49910088 | None:intergenic |
| CCTAGAAATATTACAGTATT+GGG | 0.198757 | 1.4:-49912896 | MS.gene72300:CDS |
| AAAAGTAACAAATGCCAATT+TGG | 0.221397 | 1.4:+49911218 | None:intergenic |
| CCCAATACTGTAATATTTCT+AGG | 0.263995 | 1.4:+49912896 | None:intergenic |
| TGCGGCGCCTTGTGGATTAA+AGG | 0.268903 | 1.4:-49913080 | MS.gene72300:intron |
| TTCTAATGCCAGAACCAAAT+TGG | 0.277256 | 1.4:-49911232 | MS.gene72300:CDS |
| TAGGCTAAAATATTCCATTA+TGG | 0.294033 | 1.4:-49911012 | MS.gene72300:CDS |
| CAATTAGAAGCTTGAGATTA+GGG | 0.296290 | 1.4:+49910612 | None:intergenic |
| CGAAGTCCACACACCACTTT+TGG | 0.300993 | 1.4:+49912247 | None:intergenic |
| TGGCTTTGATGTTTCCAAAA+AGG | 0.302631 | 1.4:-49913423 | MS.gene72300:CDS |
| ATGCCAACTGCCACGTTTGC+AGG | 0.308650 | 1.4:+49912178 | None:intergenic |
| TCCTAGTGCTGGTATGCTTC+TGG | 0.312631 | 1.4:-49911157 | MS.gene72300:CDS |
| CGAATTTGAGATTGGCACTA+TGG | 0.327098 | 1.4:-49910897 | MS.gene72300:CDS |
| CAGCCTTTGCATCAAATTGC+AGG | 0.327609 | 1.4:+49909998 | None:intergenic |
| GATGGTACTCAAAGAGTATA+TGG | 0.355095 | 1.4:-49913139 | MS.gene72300:CDS |
| AACAAATGCCAATTTGGTTC+TGG | 0.355707 | 1.4:+49911224 | None:intergenic |
| AGTGGACTGGTTGTTTGTTT+TGG | 0.362156 | 1.4:-49912292 | MS.gene72300:CDS |
| ACAATTAGAAGCTTGAGATT+AGG | 0.362928 | 1.4:+49910611 | None:intergenic |
| TAGGTTGGAGCAGATGAATT+TGG | 0.363232 | 1.4:-49911315 | MS.gene72300:CDS |
| GCATACCAGCACTAGGATTT+CGG | 0.364200 | 1.4:+49911163 | None:intergenic |
| CGATGGTCCCTTCATATTGC+AGG | 0.365849 | 1.4:-49913303 | MS.gene72300:intron |
| CAAAGTAATGTTGATACATC+TGG | 0.377691 | 1.4:-49911267 | MS.gene72300:CDS |
| TGAATTACCTTGAAAATACT+TGG | 0.391756 | 1.4:+49910208 | None:intergenic |
| TTATGATCCGAATTTGAGAT+TGG | 0.393249 | 1.4:-49910905 | MS.gene72300:CDS |
| TCCTAGAAATATTACAGTAT+TGG | 0.396135 | 1.4:-49912897 | MS.gene72300:CDS |
| GCAGTTGGCATCTCTAAGTT+GGG | 0.396668 | 1.4:-49912166 | MS.gene72300:CDS |
| GAAATGGTATAATGAGCATA+TGG | 0.397108 | 1.4:-49910855 | MS.gene72300:CDS |
| TCAAACTCATGGAACCATAA+TGG | 0.399197 | 1.4:+49910998 | None:intergenic |
| CACCTATTGAAACTCGGGTT+TGG | 0.410926 | 1.4:-49913500 | MS.gene72300:CDS |
| ATTATCAATATCGGTTGTAC+AGG | 0.412840 | 1.4:-49913193 | MS.gene72300:CDS |
| CATAGTGCCAATCTCAAATT+CGG | 0.415637 | 1.4:+49910898 | None:intergenic |
| AGGGACCATCGAGAGTAGTT+TGG | 0.418218 | 1.4:+49913315 | None:intergenic |
| GGCAGTTGGCATCTCTAAGT+TGG | 0.428328 | 1.4:-49912167 | MS.gene72300:CDS |
| AACCAAACCCGAGTTTCAAT+AGG | 0.440716 | 1.4:+49913498 | None:intergenic |
| AATACAACATCATCATCATA+AGG | 0.446092 | 1.4:+49910650 | None:intergenic |
| GTGGACGAAATTATCAATAT+CGG | 0.448991 | 1.4:-49913202 | MS.gene72300:CDS |
| AGGCTGAACTACGGCGGTTG+AGG | 0.454054 | 1.4:+49913589 | None:intergenic |
| TCCAAGTTGGCGAAGACAAT+CGG | 0.455066 | 1.4:+49913457 | None:intergenic |
| CAAACATCAAGGGCTTCAAT+AGG | 0.469326 | 1.4:+49913103 | None:intergenic |
| TCAGCCAAGGCTGCTCGAAA+TGG | 0.477826 | 1.4:-49910871 | MS.gene72300:CDS |
| TATACCATTTCGAGCAGCCT+TGG | 0.478840 | 1.4:+49910867 | None:intergenic |
| GAAACATACCTGCAATATGA+AGG | 0.479264 | 1.4:+49913295 | None:intergenic |
| CTAGCACCAGTTGTGTCAAC+AGG | 0.487421 | 1.4:+49910274 | None:intergenic |
| GGATCTAGCCGATGTCATAA+AGG | 0.488434 | 1.4:-49910833 | MS.gene72300:intron |
| AAGAAGTGATATCCCAATCA+TGG | 0.492354 | 1.4:-49912666 | MS.gene72300:CDS |
| TTTCGAGCAGCCTTGGCTGA+TGG | 0.495317 | 1.4:+49910874 | None:intergenic |
| GTTGAACCTGTTGACACAAC+TGG | 0.496302 | 1.4:-49910280 | MS.gene72300:CDS |
| TTCGACTGCTTCCGATTCTG+AGG | 0.497879 | 1.4:+49913556 | None:intergenic |
| TCTAATTGTTACCGAAGGGT+TGG | 0.500526 | 1.4:-49910597 | MS.gene72300:CDS |
| CAGTTGGCATCTCTAAGTTG+GGG | 0.501143 | 1.4:-49912165 | MS.gene72300:CDS |
| AAGGCGCCGCACAAACATCA+AGG | 0.501831 | 1.4:+49913092 | None:intergenic |
| AGATGAATTTGGATATATGT+TGG | 0.503210 | 1.4:-49911304 | MS.gene72300:CDS |
| CTGATCACCTATTGAAACTC+GGG | 0.508247 | 1.4:-49913505 | MS.gene72300:CDS |
| GCAATCACGGTGACAAAGAG+AGG | 0.511886 | 1.4:-49910054 | MS.gene72300:CDS |
| AAAATTTACCTTTATGACAT+CGG | 0.512596 | 1.4:+49910825 | None:intergenic |
| AGACGTGATACATGGAAGAT+TGG | 0.514451 | 1.4:-49912927 | MS.gene72300:CDS |
| GCGTCTGCTTTCAAGAAAGC+TGG | 0.519176 | 1.4:-49912208 | MS.gene72300:CDS |
| AAGCTTCTAATTGTTACCGA+AGG | 0.520336 | 1.4:-49910602 | MS.gene72300:CDS |
| GCCGATTGTCTTCGCCAACT+TGG | 0.527403 | 1.4:-49913458 | MS.gene72300:CDS |
| CTAGAAATATTACAGTATTG+GGG | 0.528363 | 1.4:-49912895 | MS.gene72300:CDS |
| AATTGTTACCGAAGGGTTGG+AGG | 0.532531 | 1.4:-49910594 | MS.gene72300:CDS |
| TAATGTATGTGCCGCAATCA+CGG | 0.536513 | 1.4:-49910067 | MS.gene72300:CDS |
| AGCTTCTAATTGTTACCGAA+GGG | 0.537211 | 1.4:-49910601 | MS.gene72300:CDS |
| TGGCTCATCAATCAAACTCA+TGG | 0.538259 | 1.4:+49910987 | None:intergenic |
| AAATGGTATAATGAGCATAT+GGG | 0.538336 | 1.4:-49910854 | MS.gene72300:CDS |
| ACAACATCATTGATACTGTC+AGG | 0.539983 | 1.4:-49912847 | MS.gene72300:intron |
| TTCATCTGCATTTATAAGCA+AGG | 0.542858 | 1.4:-49912140 | MS.gene72300:intron |
| AGTATCAATGATGTTGTGAC+TGG | 0.544617 | 1.4:+49912853 | None:intergenic |
| CTAGTGATGCATTTGTCAGT+GGG | 0.547413 | 1.4:-49910255 | MS.gene72300:CDS |
| TTAAAGGCACCTTCTTGATG+AGG | 0.548253 | 1.4:+49911112 | None:intergenic |
| CATTTAACGAATCTCCAAGT+TGG | 0.549382 | 1.4:+49913444 | None:intergenic |
| TCTACAACCCTCCAACCCTT+CGG | 0.550265 | 1.4:+49910586 | None:intergenic |
| CATCAGTCATTAACAACTGC+AGG | 0.553154 | 1.4:+49913158 | None:intergenic |
| AGTTGGCATCTCTAAGTTGG+GGG | 0.556296 | 1.4:-49912164 | MS.gene72300:CDS |
| TCTAATGTAGACGTGATACA+TGG | 0.559784 | 1.4:-49912935 | MS.gene72300:CDS |
| AGAATCTTTAGCAATTCTCA+AGG | 0.572768 | 1.4:+49910942 | None:intergenic |
| GAATTACCTTGAAAATACTT+GGG | 0.573711 | 1.4:+49910209 | None:intergenic |
| GGCACTATGGCCATCAGCCA+AGG | 0.574030 | 1.4:-49910884 | MS.gene72300:CDS |
| TCGACTGCTTCCGATTCTGA+GGG | 0.578996 | 1.4:+49913557 | None:intergenic |
| TCTGATAATCTCATAACAGA+AGG | 0.581940 | 1.4:-49912328 | MS.gene72300:CDS |
| GATAGATTTCGTGCCAAAAG+TGG | 0.585745 | 1.4:-49912260 | MS.gene72300:CDS |
| TAGAAATATTACAGTATTGG+GGG | 0.586705 | 1.4:-49912894 | MS.gene72300:CDS |
| AAAGCAGACGCTTCAGCTAG+AGG | 0.589083 | 1.4:+49912220 | None:intergenic |
| TCGGTTGTACAGGGTCTGAA+AGG | 0.589621 | 1.4:-49913183 | MS.gene72300:CDS |
| CTGCAACGAAACAAGTGGAC+TGG | 0.590072 | 1.4:-49912305 | MS.gene72300:CDS |
| TCTGATCACCTATTGAAACT+CGG | 0.591942 | 1.4:-49913506 | MS.gene72300:CDS |
| GCAAGATGAACCGACTTGCA+TGG | 0.594358 | 1.4:+49910967 | None:intergenic |
| TCTCTTTGTCACCGTGATTG+CGG | 0.597480 | 1.4:+49910056 | None:intergenic |
| GATGTTTGTGCGGCGCCTTG+TGG | 0.597482 | 1.4:-49913088 | MS.gene72300:CDS |
| GCTAGTGATGCATTTGTCAG+TGG | 0.597640 | 1.4:-49910256 | MS.gene72300:CDS |
| TGATCATAACCTCATCAAGA+AGG | 0.598780 | 1.4:-49911121 | MS.gene72300:intron |
| ATTGTTACCGAAGGGTTGGA+GGG | 0.599566 | 1.4:-49910593 | MS.gene72300:CDS |
| CAATCACGGTGACAAAGAGA+GGG | 0.601122 | 1.4:-49910053 | MS.gene72300:CDS |
| AAACATACCTGCAATATGAA+GGG | 0.607404 | 1.4:+49913296 | None:intergenic |
| GAAGGCTGCAACGAAACAAG+TGG | 0.613114 | 1.4:-49912310 | MS.gene72300:CDS |
| TGTCCTGCAATTTGATGCAA+AGG | 0.620496 | 1.4:-49910001 | MS.gene72300:CDS |
| GTTGGCATCTCTAAGTTGGG+GGG | 0.621474 | 1.4:-49912163 | MS.gene72300:CDS |
| AGGCGCCGCACAAACATCAA+GGG | 0.628109 | 1.4:+49913093 | None:intergenic |
| AAGCTCCAAACTACTCTCGA+TGG | 0.633411 | 1.4:-49913320 | MS.gene72300:CDS |
| TGAAGCCCTTGATGTTTGTG+CGG | 0.633895 | 1.4:-49913098 | MS.gene72300:CDS |
| GCTCCTGCAAACGTGGCAGT+TGG | 0.636197 | 1.4:-49912181 | MS.gene72300:CDS |
| TGGTGATGCTCCTGCAAACG+TGG | 0.639166 | 1.4:-49912188 | MS.gene72300:CDS |
| CTGCAGTTGTTAATGACTGA+TGG | 0.647979 | 1.4:-49913157 | MS.gene72300:CDS |
| GGGTTGTAGATATTACACTA+AGG | 0.649949 | 1.4:-49910573 | MS.gene72300:intron |
| ACTGCCACAAGAATTGAGAT+CGG | 0.650052 | 1.4:+49913370 | None:intergenic |
| TTGAGGCTGATCTACGAAGA+CGG | 0.650837 | 1.4:+49913606 | None:intergenic |
| GATTGATGAGCCATGCAAGT+CGG | 0.651378 | 1.4:-49910977 | MS.gene72300:CDS |
| TCCAGAAGCATACCAGCACT+AGG | 0.658678 | 1.4:+49911156 | None:intergenic |
| GTTTGGTTTGAAGAGAGACA+AGG | 0.658780 | 1.4:-49913483 | MS.gene72300:CDS |
| TTATCAATATCGGTTGTACA+GGG | 0.659758 | 1.4:-49913192 | MS.gene72300:CDS |
| CAATAGGTGATCAGAGACAT+CGG | 0.662129 | 1.4:+49913514 | None:intergenic |
| AGAAATATTACAGTATTGGG+GGG | 0.664926 | 1.4:-49912893 | MS.gene72300:CDS |
| TTCGTGCCAAAAGTGGTGTG+TGG | 0.676855 | 1.4:-49912253 | MS.gene72300:CDS |
| ATGTTGATACATCTGGCATG+CGG | 0.695350 | 1.4:-49911260 | MS.gene72300:CDS |
| GTATCAATGATGTTGTGACT+GGG | 0.712542 | 1.4:+49912854 | None:intergenic |
| GAAGAAACCTTTAATCCACA+AGG | 0.724250 | 1.4:+49913073 | None:intergenic |
| AATCACGGTGACAAAGAGAG+GGG | 0.734564 | 1.4:-49910052 | MS.gene72300:CDS |
| AGGCTGATCTACGAAGACGG+CGG | 0.790103 | 1.4:+49913609 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAATAATTAACAG+TGG | + | chr1.4:49911152-49911171 | None:intergenic | 10.0% |
| !! | TTAATTTAACAATAAGAAAA+GGG | + | chr1.4:49912159-49912178 | None:intergenic | 10.0% |
| !!! | CTTATTTGATTTAATTTTTT+TGG | + | chr1.4:49911121-49911140 | None:intergenic | 10.0% |
| !!! | TTTAATTTAACAATAAGAAA+AGG | + | chr1.4:49912160-49912179 | None:intergenic | 10.0% |
| !! | TGTAAAGTTACAAAATAATT+TGG | - | chr1.4:49911090-49911109 | MS.gene72300:intron | 15.0% |
| !!! | TATAATTTAATACTGATTGT+AGG | - | chr1.4:49912618-49912637 | MS.gene72300:intron | 15.0% |
| !! | AAAATTTACCTTTATGACAT+CGG | + | chr1.4:49912827-49912846 | None:intergenic | 20.0% |
| !! | AAAGTACAATAATAGAATCT+AGG | - | chr1.4:49911811-49911830 | MS.gene72300:intron | 20.0% |
| !! | AAGTACAATAATAGAATCTA+GGG | - | chr1.4:49911812-49911831 | MS.gene72300:intron | 20.0% |
| !! | AATCTAACTCATTCAATATT+AGG | + | chr1.4:49911035-49911054 | None:intergenic | 20.0% |
| !! | AGATTTGAAAAAATCAAACA+TGG | + | chr1.4:49911584-49911603 | None:intergenic | 20.0% |
| !! | AGTAAATACATGATATTTCT+AGG | + | chr1.4:49912201-49912220 | None:intergenic | 20.0% |
| !! | ATATATGTATTCAGATGAAA+AGG | + | chr1.4:49910617-49910636 | None:intergenic | 20.0% |
| !! | CAAAGAAAATAATGAAATGA+GGG | + | chr1.4:49913158-49913177 | None:intergenic | 20.0% |
| !! | TAAGAAATTTGTAATGTGTT+GGG | - | chr1.4:49911611-49911630 | MS.gene72300:intron | 20.0% |
| !! | TATTTATTCACATGGTTATT+TGG | - | chr1.4:49911546-49911565 | MS.gene72300:intron | 20.0% |
| !! | TTAAGAAATTTGTAATGTGT+TGG | - | chr1.4:49911610-49911629 | MS.gene72300:intron | 20.0% |
| !!! | CAGATTTTAATTGTTTGAAT+AGG | - | chr1.4:49913123-49913142 | MS.gene72300:CDS | 20.0% |
| !!! | TTCGTTCAATTTTTTTTTAC+CGG | + | chr1.4:49911279-49911298 | None:intergenic | 20.0% |
| ! | AAAAGTAACAAATGCCAATT+TGG | + | chr1.4:49912434-49912453 | None:intergenic | 25.0% |
| ! | AAATCTGAGTTAAATGACTT+TGG | + | chr1.4:49913110-49913129 | None:intergenic | 25.0% |
| ! | AAATGGTATAATGAGCATAT+GGG | - | chr1.4:49912795-49912814 | MS.gene72300:intron | 25.0% |
| ! | AACAATAAGAAAAGGGAAAA+GGG | + | chr1.4:49912152-49912171 | None:intergenic | 25.0% |
| ! | AATACAACATCATCATCATA+AGG | + | chr1.4:49913002-49913021 | None:intergenic | 25.0% |
| ! | AATATACAGACTTAAACCAT+AGG | + | chr1.4:49912598-49912617 | None:intergenic | 25.0% |
| ! | AGATGAATTTGGATATATGT+TGG | - | chr1.4:49912345-49912364 | MS.gene72300:intron | 25.0% |
| ! | CCTAGAAATATTACAGTATT+GGG | - | chr1.4:49910753-49910772 | MS.gene72300:intron | 25.0% |
| ! | CTAGAAATATTACAGTATTG+GGG | - | chr1.4:49910754-49910773 | MS.gene72300:intron | 25.0% |
| ! | GAATTACCTTGAAAATACTT+GGG | + | chr1.4:49913443-49913462 | None:intergenic | 25.0% |
| ! | GCAAAGAAAATAATGAAATG+AGG | + | chr1.4:49913159-49913178 | None:intergenic | 25.0% |
| ! | TAAACAGAGATGGAAATTAA+AGG | + | chr1.4:49912556-49912575 | None:intergenic | 25.0% |
| ! | TAACAATAAGAAAAGGGAAA+AGG | + | chr1.4:49912153-49912172 | None:intergenic | 25.0% |
| ! | TAGGCTAAAATATTCCATTA+TGG | - | chr1.4:49912637-49912656 | MS.gene72300:intron | 25.0% |
| ! | TCCTAGAAATATTACAGTAT+TGG | - | chr1.4:49910752-49910771 | MS.gene72300:intron | 25.0% |
| ! | TCTATGTCTATTTATTCACA+TGG | - | chr1.4:49911538-49911557 | MS.gene72300:intron | 25.0% |
| ! | TGAATTACCTTGAAAATACT+TGG | + | chr1.4:49913444-49913463 | None:intergenic | 25.0% |
| ! | TGATTACTAAATTATTGTGC+AGG | - | chr1.4:49913317-49913336 | MS.gene72300:CDS | 25.0% |
| ! | TGCTTAAGTAATCATAAATC+AGG | + | chr1.4:49911902-49911921 | None:intergenic | 25.0% |
| !! | AATTATTGTGCAGGATTTTA+AGG | - | chr1.4:49913326-49913345 | MS.gene72300:CDS | 25.0% |
| !! | ATTATTGTGCAGGATTTTAA+GGG | - | chr1.4:49913327-49913346 | MS.gene72300:CDS | 25.0% |
| !! | ATTGATTACACTTTTCTGAA+TGG | - | chr1.4:49911643-49911662 | MS.gene72300:intron | 25.0% |
| !! | GTAGTAGTATTCTGAATTTT+AGG | - | chr1.4:49912251-49912270 | MS.gene72300:CDS | 25.0% |
| !! | TAGAAATATTACAGTATTGG+GGG | - | chr1.4:49910755-49910774 | MS.gene72300:intron | 25.0% |
| !! | TAGCGAAATATAATGCATTT+TGG | + | chr1.4:49913564-49913583 | None:intergenic | 25.0% |
| !!! | AGCTTTTGAAAATTAAGAGT+AGG | + | chr1.4:49910314-49910333 | None:intergenic | 25.0% |
| !!! | GTTTTTTGCTATTTTTCTCT+TGG | + | chr1.4:49910015-49910034 | None:intergenic | 25.0% |
| AAACATACCTGCAATATGAA+GGG | + | chr1.4:49910356-49910375 | None:intergenic | 30.0% | |
| AATGAAACGTTGTCATGTTT+GGG | - | chr1.4:49911718-49911737 | MS.gene72300:intron | 30.0% | |
| ACAATTAGAAGCTTGAGATT+AGG | + | chr1.4:49913041-49913060 | None:intergenic | 30.0% | |
| ACTTAAACCATAGGTCTTTA+TGG | + | chr1.4:49912589-49912608 | None:intergenic | 30.0% | |
| ACTTAAGCAGTAAGTAATGA+GGG | - | chr1.4:49911913-49911932 | MS.gene72300:intron | 30.0% | |
| AGAAAAAAATTGTGCGTGTT+TGG | - | chr1.4:49913497-49913516 | MS.gene72300:CDS | 30.0% | |
| AGAATCTTTAGCAATTCTCA+AGG | + | chr1.4:49912710-49912729 | None:intergenic | 30.0% | |
| CAAAGTAATGTTGATACATC+TGG | - | chr1.4:49912382-49912401 | MS.gene72300:intron | 30.0% | |
| CAATTAGAAGCTTGAGATTA+GGG | + | chr1.4:49913040-49913059 | None:intergenic | 30.0% | |
| CATATTATATCAGTCAGTCA+TGG | - | chr1.4:49910830-49910849 | MS.gene72300:intron | 30.0% | |
| CCATCTCTGTTTATAAAATG+TGG | - | chr1.4:49912563-49912582 | MS.gene72300:intron | 30.0% | |
| CCCAATACTGTAATATTTCT+AGG | + | chr1.4:49910756-49910775 | None:intergenic | 30.0% | |
| GAAAAAAGAATGAAGTGCAA+TGG | + | chr1.4:49912893-49912912 | None:intergenic | 30.0% | |
| GAAATGGTATAATGAGCATA+TGG | - | chr1.4:49912794-49912813 | MS.gene72300:intron | 30.0% | |
| GTGGACGAAATTATCAATAT+CGG | - | chr1.4:49910447-49910466 | MS.gene72300:intron | 30.0% | |
| GTTGTATTTATAGCCTTCTA+TGG | - | chr1.4:49911875-49911894 | MS.gene72300:intron | 30.0% | |
| TACTTAAGCAGTAAGTAATG+AGG | - | chr1.4:49911912-49911931 | MS.gene72300:intron | 30.0% | |
| TCTGATAATCTCATAACAGA+AGG | - | chr1.4:49911321-49911340 | MS.gene72300:intron | 30.0% | |
| TTCATCTGCATTTATAAGCA+AGG | - | chr1.4:49911509-49911528 | MS.gene72300:intron | 30.0% | |
| TTCATTCTATTCTTCCTTTG+CGG | - | chr1.4:49910390-49910409 | MS.gene72300:intron | 30.0% | |
| ! | AGAAATATTACAGTATTGGG+GGG | - | chr1.4:49910756-49910775 | MS.gene72300:intron | 30.0% |
| ! | ATTATCAATATCGGTTGTAC+AGG | - | chr1.4:49910456-49910475 | MS.gene72300:intron | 30.0% |
| ! | CCACATTTTATAAACAGAGA+TGG | + | chr1.4:49912566-49912585 | None:intergenic | 30.0% |
| ! | TTATCAATATCGGTTGTACA+GGG | - | chr1.4:49910457-49910476 | MS.gene72300:intron | 30.0% |
| ! | TTATGATCCGAATTTGAGAT+TGG | - | chr1.4:49912744-49912763 | MS.gene72300:intron | 30.0% |
| !! | ACTTTTTCTTGTCCATGATT+GGG | + | chr1.4:49910998-49911017 | None:intergenic | 30.0% |
| !! | AGTAAGTAATGAGGGTATTT+AGG | - | chr1.4:49911921-49911940 | MS.gene72300:intron | 30.0% |
| !!! | GATGAGATTACTTTTTTGAC+TGG | - | chr1.4:49912966-49912985 | MS.gene72300:intron | 30.0% |
| !!! | TACTTTTTCTTGTCCATGAT+TGG | + | chr1.4:49910999-49911018 | None:intergenic | 30.0% |
| AAGAAGTGATATCCCAATCA+TGG | - | chr1.4:49910983-49911002 | MS.gene72300:CDS | 35.0% | |
| AAGCTTCTAATTGTTACCGA+AGG | - | chr1.4:49913047-49913066 | MS.gene72300:intron | 35.0% | |
| ACAACATCATTGATACTGTC+AGG | - | chr1.4:49910802-49910821 | MS.gene72300:intron | 35.0% | |
| AGCTTCTAATTGTTACCGAA+GGG | - | chr1.4:49913048-49913067 | MS.gene72300:intron | 35.0% | |
| AGTATCAATGATGTTGTGAC+TGG | + | chr1.4:49910799-49910818 | None:intergenic | 35.0% | |
| AGTTAAGCTATCATCTTCTC+AGG | + | chr1.4:49912294-49912313 | None:intergenic | 35.0% | |
| ATATCAGTCAGTCATGGTTA+CGG | - | chr1.4:49910836-49910855 | MS.gene72300:CDS | 35.0% | |
| ATTCCAAAGCTCACATTTCA+AGG | + | chr1.4:49911701-49911720 | None:intergenic | 35.0% | |
| ATTCGACACTCAATGACAAA+TGG | - | chr1.4:49913239-49913258 | MS.gene72300:intron | 35.0% | |
| ATTTCTGAGTATCATCACTG+TGG | + | chr1.4:49910876-49910895 | None:intergenic | 35.0% | |
| CAACTTGGAGATTCGTTAAA+TGG | - | chr1.4:49910206-49910225 | MS.gene72300:intron | 35.0% | |
| CAAGTTGTAAAACTTGAGCA+TGG | - | chr1.4:49913262-49913281 | MS.gene72300:intron | 35.0% | |
| CATAGTGCCAATCTCAAATT+CGG | + | chr1.4:49912754-49912773 | None:intergenic | 35.0% | |
| CATTTAACGAATCTCCAAGT+TGG | + | chr1.4:49910208-49910227 | None:intergenic | 35.0% | |
| CTTTGATGTTTCCAAAAAGG+CGG | - | chr1.4:49910229-49910248 | MS.gene72300:CDS | 35.0% | |
| GAAACATACCTGCAATATGA+AGG | + | chr1.4:49910357-49910376 | None:intergenic | 35.0% | |
| GAAGAAACCTTTAATCCACA+AGG | + | chr1.4:49910579-49910598 | None:intergenic | 35.0% | |
| GAATGAAACGTTGTCATGTT+TGG | - | chr1.4:49911717-49911736 | MS.gene72300:intron | 35.0% | |
| GGGTTGTAGATATTACACTA+AGG | - | chr1.4:49913076-49913095 | MS.gene72300:intron | 35.0% | |
| GTATCAATGATGTTGTGACT+GGG | + | chr1.4:49910798-49910817 | None:intergenic | 35.0% | |
| TATATGAAGTTTCTCTGCAG+TGG | - | chr1.4:49911251-49911270 | MS.gene72300:CDS | 35.0% | |
| TCAAAAAGTTCCCTCAGAAT+CGG | - | chr1.4:49910082-49910101 | MS.gene72300:CDS | 35.0% | |
| TCAAACTCATGGAACCATAA+TGG | + | chr1.4:49912654-49912673 | None:intergenic | 35.0% | |
| TCATAAATCAGGTCCATAGA+AGG | + | chr1.4:49911891-49911910 | None:intergenic | 35.0% | |
| TCTAATGTAGACGTGATACA+TGG | - | chr1.4:49910714-49910733 | MS.gene72300:intron | 35.0% | |
| TCTGATCACCTATTGAAACT+CGG | - | chr1.4:49910143-49910162 | MS.gene72300:intron | 35.0% | |
| TGATCATAACCTCATCAAGA+AGG | - | chr1.4:49912528-49912547 | MS.gene72300:intron | 35.0% | |
| TGGAAATGGGAAGTTATAGT+TGG | + | chr1.4:49912119-49912138 | None:intergenic | 35.0% | |
| TTCTAATGCCAGAACCAAAT+TGG | - | chr1.4:49912417-49912436 | MS.gene72300:intron | 35.0% | |
| TTGAAGTGGTTTCTATTCGA+TGG | + | chr1.4:49912089-49912108 | None:intergenic | 35.0% | |
| ! | AACAAATGCCAATTTGGTTC+TGG | + | chr1.4:49912428-49912447 | None:intergenic | 35.0% |
| ! | ACATCTTTTGTAGGTAATGC+AGG | + | chr1.4:49913628-49913647 | None:intergenic | 35.0% |
| ! | ACGAACAATTCATGTTTTGC+AGG | - | chr1.4:49911294-49911313 | MS.gene72300:CDS | 35.0% |
| ! | AGAGATGTATTGGTACTTGT+AGG | - | chr1.4:49910683-49910702 | MS.gene72300:CDS | 35.0% |
| ! | CTAAAACACAGATGATGATG+AGG | + | chr1.4:49912317-49912336 | None:intergenic | 35.0% |
| ! | CTCATCATCATCTGTGTTTT+AGG | - | chr1.4:49912315-49912334 | MS.gene72300:CDS | 35.0% |
| ! | GATGGTACTCAAAGAGTATA+TGG | - | chr1.4:49910510-49910529 | MS.gene72300:intron | 35.0% |
| ! | GGTTAACTTGAGAGATGTAT+TGG | - | chr1.4:49910673-49910692 | MS.gene72300:CDS | 35.0% |
| ! | GTACTTTTGCAAGTACAGAT+GGG | + | chr1.4:49911798-49911817 | None:intergenic | 35.0% |
| ! | TGATGAGTTGACTGAAATGT+TGG | - | chr1.4:49913188-49913207 | MS.gene72300:CDS | 35.0% |
| ! | TGTACTTTTGCAAGTACAGA+TGG | + | chr1.4:49911799-49911818 | None:intergenic | 35.0% |
| ! | TTCTGACCCAAGTATTTTCA+AGG | - | chr1.4:49913434-49913453 | MS.gene72300:CDS | 35.0% |
| ! | TTTTCCGATCTCAATTCTTG+TGG | - | chr1.4:49910275-49910294 | MS.gene72300:CDS | 35.0% |
| ! | TTTTTGTGCTAAATCGTCTC+TGG | - | chr1.4:49910925-49910944 | MS.gene72300:CDS | 35.0% |
| !! | GATTTTAAGGGCAAAGTTAG+AGG | - | chr1.4:49913339-49913358 | MS.gene72300:CDS | 35.0% |
| !! | GTTGACGAAGTTATTTTGTG+TGG | - | chr1.4:49913521-49913540 | MS.gene72300:CDS | 35.0% |
| !! | TCATCATCTGTGTTTTAGGT+TGG | - | chr1.4:49912319-49912338 | MS.gene72300:CDS | 35.0% |
| !! | TGGCTTTGATGTTTCCAAAA+AGG | - | chr1.4:49910226-49910245 | MS.gene72300:CDS | 35.0% |
| !!! | AACTTTTTGAGGCTGAACTA+CGG | + | chr1.4:49910072-49910091 | None:intergenic | 35.0% |
| !!! | ATTACTTTTTTGACTGGTGG+TGG | - | chr1.4:49912972-49912991 | MS.gene72300:intron | 35.0% |
| !!! | GAGATTACTTTTTTGACTGG+TGG | - | chr1.4:49912969-49912988 | MS.gene72300:intron | 35.0% |
| AAAGGGAAAAGGGTAGAATG+AGG | + | chr1.4:49912142-49912161 | None:intergenic | 40.0% | |
| AACCAAACCCGAGTTTCAAT+AGG | + | chr1.4:49910154-49910173 | None:intergenic | 40.0% | |
| AAGTCCTCAGGAAGATATTG+CGG | - | chr1.4:49912059-49912078 | MS.gene72300:intron | 40.0% | |
| AAGTGGTTTCTATTCGATGG+TGG | + | chr1.4:49912086-49912105 | None:intergenic | 40.0% | |
| AATGGCATGTGTGTGTTTCA+AGG | - | chr1.4:49911661-49911680 | MS.gene72300:intron | 40.0% | |
| AATGTGGCCATAAAGACCTA+TGG | - | chr1.4:49912579-49912598 | MS.gene72300:intron | 40.0% | |
| ACTCCTTGAAATGTGAGCTT+TGG | - | chr1.4:49911695-49911714 | MS.gene72300:intron | 40.0% | |
| ACTGCCACAAGAATTGAGAT+CGG | + | chr1.4:49910282-49910301 | None:intergenic | 40.0% | |
| AGACGTGATACATGGAAGAT+TGG | - | chr1.4:49910722-49910741 | MS.gene72300:intron | 40.0% | |
| ATGGGAAGTTATAGTTGGTC+AGG | + | chr1.4:49912114-49912133 | None:intergenic | 40.0% | |
| ATGTTGATACATCTGGCATG+CGG | - | chr1.4:49912389-49912408 | MS.gene72300:intron | 40.0% | |
| CAAACATCAAGGGCTTCAAT+AGG | + | chr1.4:49910549-49910568 | None:intergenic | 40.0% | |
| CAATAGGTGATCAGAGACAT+CGG | + | chr1.4:49910138-49910157 | None:intergenic | 40.0% | |
| CATCAGTCATTAACAACTGC+AGG | + | chr1.4:49910494-49910513 | None:intergenic | 40.0% | |
| CATTTCACACTCAAACGCAT+TGG | - | chr1.4:49910421-49910440 | MS.gene72300:intron | 40.0% | |
| CTAGTGATGCATTTGTCAGT+GGG | - | chr1.4:49913394-49913413 | MS.gene72300:CDS | 40.0% | |
| CTCTCAAGTTAACCCTAACT+CGG | + | chr1.4:49910667-49910686 | None:intergenic | 40.0% | |
| CTGATCACCTATTGAAACTC+GGG | - | chr1.4:49910144-49910163 | MS.gene72300:intron | 40.0% | |
| CTGCAGTTGTTAATGACTGA+TGG | - | chr1.4:49910492-49910511 | MS.gene72300:intron | 40.0% | |
| GATAGATTTCGTGCCAAAAG+TGG | - | chr1.4:49911389-49911408 | MS.gene72300:intron | 40.0% | |
| GTTTATGTGATCCCTTGAGA+AGG | - | chr1.4:49911843-49911862 | MS.gene72300:intron | 40.0% | |
| TAATGTATGTGCCGCAATCA+CGG | - | chr1.4:49913582-49913601 | MS.gene72300:CDS | 40.0% | |
| TCTAATTGTTACCGAAGGGT+TGG | - | chr1.4:49913052-49913071 | MS.gene72300:intron | 40.0% | |
| TGGCTCATCAATCAAACTCA+TGG | + | chr1.4:49912665-49912684 | None:intergenic | 40.0% | |
| TGTCCTGCAATTTGATGCAA+AGG | - | chr1.4:49913648-49913667 | MS.gene72300:CDS | 40.0% | |
| ! | AATATTACAGTATTGGGGGG+TGG | - | chr1.4:49910759-49910778 | MS.gene72300:intron | 40.0% |
| ! | CGAATTTGAGATTGGCACTA+TGG | - | chr1.4:49912752-49912771 | MS.gene72300:intron | 40.0% |
| ! | GAAACAGATTTCCGCCTTTT+TGG | + | chr1.4:49910243-49910262 | None:intergenic | 40.0% |
| ! | GAAATGTTCAAGTTCCGCAA+AGG | + | chr1.4:49910407-49910426 | None:intergenic | 40.0% |
| ! | GGTAAAGTTCGTGCATTTTG+AGG | - | chr1.4:49911739-49911758 | MS.gene72300:intron | 40.0% |
| ! | TAGGTTGGAGCAGATGAATT+TGG | - | chr1.4:49912334-49912353 | MS.gene72300:CDS | 40.0% |
| ! | TGCAGGACAACATCTTTTGT+AGG | + | chr1.4:49913637-49913656 | None:intergenic | 40.0% |
| ! | TTGCTATTCTCTCCGAGTTA+GGG | - | chr1.4:49910652-49910671 | MS.gene72300:CDS | 40.0% |
| ! | TTTTTCCGAAATCCTAGTGC+TGG | - | chr1.4:49912481-49912500 | MS.gene72300:intron | 40.0% |
| !! | ACGAAGTTATTTTGTGTGGC+AGG | - | chr1.4:49913525-49913544 | MS.gene72300:CDS | 40.0% |
| !! | GATTCTGAGGGAACTTTTTG+AGG | + | chr1.4:49910083-49910102 | None:intergenic | 40.0% |
| !! | GTTTGGTTTGAAGAGAGACA+AGG | - | chr1.4:49910166-49910185 | MS.gene72300:intron | 40.0% |
| !! | TTAAAGGCACCTTCTTGATG+AGG | + | chr1.4:49912540-49912559 | None:intergenic | 40.0% |
| !! | TTTGCTATTCTCTCCGAGTT+AGG | - | chr1.4:49910651-49910670 | MS.gene72300:CDS | 40.0% |
| !!! | AGTGGACTGGTTGTTTGTTT+TGG | - | chr1.4:49911357-49911376 | MS.gene72300:intron | 40.0% |
| !!! | TAGTTGGTCAGGTTTTGAAG+TGG | + | chr1.4:49912103-49912122 | None:intergenic | 40.0% |
| AAGCTCCAAACTACTCTCGA+TGG | - | chr1.4:49910329-49910348 | MS.gene72300:intron | 45.0% | |
| AAGTTTCTCTGCAGTGGTAC+CGG | - | chr1.4:49911257-49911276 | MS.gene72300:CDS | 45.0% | |
| AATCACGGTGACAAAGAGAG+GGG | - | chr1.4:49913597-49913616 | MS.gene72300:CDS | 45.0% | |
| AATTGTTACCGAAGGGTTGG+AGG | - | chr1.4:49913055-49913074 | MS.gene72300:intron | 45.0% | |
| AGGGTAGAATGAGGTGGAAA+TGG | + | chr1.4:49912133-49912152 | None:intergenic | 45.0% | |
| ATTGTTACCGAAGGGTTGGA+GGG | - | chr1.4:49913056-49913075 | MS.gene72300:intron | 45.0% | |
| CAATCACGGTGACAAAGAGA+GGG | - | chr1.4:49913596-49913615 | MS.gene72300:CDS | 45.0% | |
| CACCTATTGAAACTCGGGTT+TGG | - | chr1.4:49910149-49910168 | MS.gene72300:intron | 45.0% | |
| CAGATGAAAAGGATGTCTCG+TGG | + | chr1.4:49910606-49910625 | None:intergenic | 45.0% | |
| CAGCCTTTGCATCAAATTGC+AGG | + | chr1.4:49913654-49913673 | None:intergenic | 45.0% | |
| CAGTTGGCATCTCTAAGTTG+GGG | - | chr1.4:49911484-49911503 | MS.gene72300:intron | 45.0% | |
| GATTGATGAGCCATGCAAGT+CGG | - | chr1.4:49912672-49912691 | MS.gene72300:CDS | 45.0% | |
| GCAGTTGGCATCTCTAAGTT+GGG | - | chr1.4:49911483-49911502 | MS.gene72300:intron | 45.0% | |
| GCATACCAGCACTAGGATTT+CGG | + | chr1.4:49912489-49912508 | None:intergenic | 45.0% | |
| GCTAGTGATGCATTTGTCAG+TGG | - | chr1.4:49913393-49913412 | MS.gene72300:CDS | 45.0% | |
| GGATCTAGCCGATGTCATAA+AGG | - | chr1.4:49912816-49912835 | MS.gene72300:intron | 45.0% | |
| GGGTAGAATGAGGTGGAAAT+GGG | + | chr1.4:49912132-49912151 | None:intergenic | 45.0% | |
| GTTGAACCTGTTGACACAAC+TGG | - | chr1.4:49913369-49913388 | MS.gene72300:CDS | 45.0% | |
| TATACCATTTCGAGCAGCCT+TGG | + | chr1.4:49912785-49912804 | None:intergenic | 45.0% | |
| TCTCTTTGTCACCGTGATTG+CGG | + | chr1.4:49913596-49913615 | None:intergenic | 45.0% | |
| TGAAGCCCTTGATGTTTGTG+CGG | - | chr1.4:49910551-49910570 | MS.gene72300:intron | 45.0% | |
| TTGAGGCTGATCTACGAAGA+CGG | + | chr1.4:49910046-49910065 | None:intergenic | 45.0% | |
| ! | AGTTGGCATCTCTAAGTTGG+GGG | - | chr1.4:49911485-49911504 | MS.gene72300:intron | 45.0% |
| ! | TCCAAGTTGGCGAAGACAAT+CGG | + | chr1.4:49910195-49910214 | None:intergenic | 45.0% |
| ! | TGTTGAGCTTGCTTGTTAGC+TGG | - | chr1.4:49911188-49911207 | MS.gene72300:CDS | 45.0% |
| !! | CTTGAGCATGGTTTGCTTCA+AGG | - | chr1.4:49913274-49913293 | MS.gene72300:intron | 45.0% |
| !! | TTCTAGAAGCCTCTAGAGCT+CGG | + | chr1.4:49911955-49911974 | None:intergenic | 45.0% |
| !!! | TTTTTGAGGCTGAACTACGG+CGG | + | chr1.4:49910069-49910088 | None:intergenic | 45.0% |
| AAAGCAGACGCTTCAGCTAG+AGG | + | chr1.4:49911432-49911451 | None:intergenic | 50.0% | |
| AACCCTTGAGAGCCTTCTCA+AGG | + | chr1.4:49911858-49911877 | None:intergenic | 50.0% | |
| ACCCTTGAGAGCCTTCTCAA+GGG | + | chr1.4:49911857-49911876 | None:intergenic | 50.0% | |
| ACTTAAGAAGCCCTCCCAAG+GGG | + | chr1.4:49912043-49912062 | None:intergenic | 50.0% | |
| AGGGACCATCGAGAGTAGTT+TGG | + | chr1.4:49910337-49910356 | None:intergenic | 50.0% | |
| ATCCCTTGAGAAGGCTCTCA+AGG | - | chr1.4:49911852-49911871 | MS.gene72300:intron | 50.0% | |
| CGATGGTCCCTTCATATTGC+AGG | - | chr1.4:49910346-49910365 | MS.gene72300:intron | 50.0% | |
| CTAGCACCAGTTGTGTCAAC+AGG | + | chr1.4:49913378-49913397 | None:intergenic | 50.0% | |
| CTGCAACGAAACAAGTGGAC+TGG | - | chr1.4:49911344-49911363 | MS.gene72300:intron | 50.0% | |
| GAAGGCTGCAACGAAACAAG+TGG | - | chr1.4:49911339-49911358 | MS.gene72300:intron | 50.0% | |
| GACTTAAGAAGCCCTCCCAA+GGG | + | chr1.4:49912044-49912063 | None:intergenic | 50.0% | |
| GCAATCACGGTGACAAAGAG+AGG | - | chr1.4:49913595-49913614 | MS.gene72300:CDS | 50.0% | |
| GCGTCTGCTTTCAAGAAAGC+TGG | - | chr1.4:49911441-49911460 | MS.gene72300:intron | 50.0% | |
| GGCAGTTGGCATCTCTAAGT+TGG | - | chr1.4:49911482-49911501 | MS.gene72300:intron | 50.0% | |
| GGGAAAAGGGTAGAATGAGG+TGG | + | chr1.4:49912139-49912158 | None:intergenic | 50.0% | |
| TCCCTTGAGAAGGCTCTCAA+GGG | - | chr1.4:49911853-49911872 | MS.gene72300:intron | 50.0% | |
| TCGACTGCTTCCGATTCTGA+GGG | + | chr1.4:49910095-49910114 | None:intergenic | 50.0% | |
| TCGGTTGTACAGGGTCTGAA+AGG | - | chr1.4:49910466-49910485 | MS.gene72300:intron | 50.0% | |
| TCGTCTCTGGCTATGCTTGA+AGG | - | chr1.4:49910938-49910957 | MS.gene72300:CDS | 50.0% | |
| TCTACAACCCTCCAACCCTT+CGG | + | chr1.4:49913066-49913085 | None:intergenic | 50.0% | |
| TGGACCGCAATATCTTCCTG+AGG | + | chr1.4:49912066-49912085 | None:intergenic | 50.0% | |
| TTCGACTGCTTCCGATTCTG+AGG | + | chr1.4:49910096-49910115 | None:intergenic | 50.0% | |
| TTCGTGCCAAAAGTGGTGTG+TGG | - | chr1.4:49911396-49911415 | MS.gene72300:intron | 50.0% | |
| ! | CGAAGTCCACACACCACTTT+TGG | + | chr1.4:49911405-49911424 | None:intergenic | 50.0% |
| ! | CTCTAGAGGCTTCTAGAAGC+TGG | - | chr1.4:49911957-49911976 | MS.gene72300:intron | 50.0% |
| ! | CTTCTAGAAGCTGGCTGATG+CGG | - | chr1.4:49911966-49911985 | MS.gene72300:intron | 50.0% |
| ! | GAGCTTGCTTGTTAGCTGGT+TGG | - | chr1.4:49911192-49911211 | MS.gene72300:CDS | 50.0% |
| ! | GTCATTATGCCGAGCTCTAG+AGG | - | chr1.4:49911943-49911962 | MS.gene72300:intron | 50.0% |
| ! | GTTGGCATCTCTAAGTTGGG+GGG | - | chr1.4:49911486-49911505 | MS.gene72300:intron | 50.0% |
| ! | TCACACTCAAACGCATTGGC+AGG | - | chr1.4:49910425-49910444 | MS.gene72300:intron | 50.0% |
| ! | TCCAGAAGCATACCAGCACT+AGG | + | chr1.4:49912496-49912515 | None:intergenic | 50.0% |
| !! | GCAAGATGAACCGACTTGCA+TGG | + | chr1.4:49912685-49912704 | None:intergenic | 50.0% |
| !! | TCCTAGTGCTGGTATGCTTC+TGG | - | chr1.4:49912492-49912511 | MS.gene72300:intron | 50.0% |
| AGGCTGATCTACGAAGACGG+CGG | + | chr1.4:49910043-49910062 | None:intergenic | 55.0% | |
| ATGCCAACTGCCACGTTTGC+AGG | + | chr1.4:49911474-49911493 | None:intergenic | 55.0% | |
| GCCGATTGTCTTCGCCAACT+TGG | - | chr1.4:49910191-49910210 | MS.gene72300:intron | 55.0% | |
| GGACTTAAGAAGCCCTCCCA+AGG | + | chr1.4:49912045-49912064 | None:intergenic | 55.0% | |
| GGAGGGCTTCTTAAGTCCTC+AGG | - | chr1.4:49912047-49912066 | MS.gene72300:intron | 55.0% | |
| TCAGCCAAGGCTGCTCGAAA+TGG | - | chr1.4:49912778-49912797 | MS.gene72300:intron | 55.0% | |
| TTTCGAGCAGCCTTGGCTGA+TGG | + | chr1.4:49912778-49912797 | None:intergenic | 55.0% | |
| ! | AGGCGCCGCACAAACATCAA+GGG | + | chr1.4:49910559-49910578 | None:intergenic | 55.0% |
| ! | CACTCAAACGCATTGGCAGG+TGG | - | chr1.4:49910428-49910447 | MS.gene72300:intron | 55.0% |
| ! | TGCGGCGCCTTGTGGATTAA+AGG | - | chr1.4:49910569-49910588 | MS.gene72300:intron | 55.0% |
| ! | TGGTGATGCTCCTGCAAACG+TGG | - | chr1.4:49911461-49911480 | MS.gene72300:intron | 55.0% |
| !! | AAGGCGCCGCACAAACATCA+AGG | + | chr1.4:49910560-49910579 | None:intergenic | 55.0% |
| AAGCCCTCCCAAGGGGTCTA+AGG | + | chr1.4:49912036-49912055 | None:intergenic | 60.0% | |
| AGGAGGGTCCTTAGACCCCT+TGG | - | chr1.4:49912025-49912044 | MS.gene72300:intron | 60.0% | |
| AGGCTGAACTACGGCGGTTG+AGG | + | chr1.4:49910063-49910082 | None:intergenic | 60.0% | |
| GATGTTTGTGCGGCGCCTTG+TGG | - | chr1.4:49910561-49910580 | MS.gene72300:intron | 60.0% | |
| GCTCCTGCAAACGTGGCAGT+TGG | - | chr1.4:49911468-49911487 | MS.gene72300:intron | 60.0% | |
| GGAGGGTCCTTAGACCCCTT+GGG | - | chr1.4:49912026-49912045 | MS.gene72300:intron | 60.0% | |
| GGCACTATGGCCATCAGCCA+AGG | - | chr1.4:49912765-49912784 | MS.gene72300:intron | 60.0% | |
| GGGTCTAAGGACCCTCCTAG+AGG | + | chr1.4:49912023-49912042 | None:intergenic | 60.0% | |
| GGTCCTTAGACCCCTTGGGA+GGG | - | chr1.4:49912030-49912049 | MS.gene72300:intron | 60.0% | |
| AGGCCTCAGCGCCGTCCTAA+AGG | + | chr1.4:49912003-49912022 | None:intergenic | 65.0% | |
| CGCCGTCCTAAAGGGCTCCA+GGG | + | chr1.4:49911994-49912013 | None:intergenic | 65.0% | |
| GGCCTCAGCGCCGTCCTAAA+GGG | + | chr1.4:49912002-49912021 | None:intergenic | 65.0% | |
| GGGTCCTTAGACCCCTTGGG+AGG | - | chr1.4:49912029-49912048 | MS.gene72300:intron | 65.0% | |
| ! | CGCCCTGGAGCCCTTTAGGA+CGG | - | chr1.4:49911989-49912008 | MS.gene72300:intron | 65.0% |
| !! | AGCCCTTTAGGACGGCGCTG+AGG | - | chr1.4:49911997-49912016 | MS.gene72300:intron | 65.0% |
| GCGCCGTCCTAAAGGGCTCC+AGG | + | chr1.4:49911995-49912014 | None:intergenic | 70.0% | |
| ! | ACGGCGCTGAGGCCTCTAGG+AGG | - | chr1.4:49912008-49912027 | MS.gene72300:intron | 70.0% |
| ! | AGGACGGCGCTGAGGCCTCT+AGG | - | chr1.4:49912005-49912024 | MS.gene72300:intron | 70.0% |
| ! | CGGCGCTGAGGCCTCTAGGA+GGG | - | chr1.4:49912009-49912028 | MS.gene72300:intron | 70.0% |
| AGCTGGCTGATGCGGCGCCC+TGG | - | chr1.4:49911974-49911993 | MS.gene72300:intron | 75.0% | |
| GCGGCGCCCTGGAGCCCTTT+AGG | - | chr1.4:49911985-49912004 | MS.gene72300:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 49909990 | 49913681 | 49909990 | ID=MS.gene72300 |
| chr1.4 | mRNA | 49909990 | 49913681 | 49909990 | ID=MS.gene72300.t1;Parent=MS.gene72300 |
| chr1.4 | exon | 49913304 | 49913681 | 49913304 | ID=MS.gene72300.t1.exon1;Parent=MS.gene72300.t1 |
| chr1.4 | CDS | 49913304 | 49913681 | 49913304 | ID=cds.MS.gene72300.t1;Parent=MS.gene72300.t1 |
| chr1.4 | exon | 49913081 | 49913224 | 49913081 | ID=MS.gene72300.t1.exon2;Parent=MS.gene72300.t1 |
| chr1.4 | CDS | 49913081 | 49913224 | 49913081 | ID=cds.MS.gene72300.t1;Parent=MS.gene72300.t1 |
| chr1.4 | exon | 49912848 | 49912966 | 49912848 | ID=MS.gene72300.t1.exon3;Parent=MS.gene72300.t1 |
| chr1.4 | CDS | 49912848 | 49912966 | 49912848 | ID=cds.MS.gene72300.t1;Parent=MS.gene72300.t1 |
| chr1.4 | exon | 49912656 | 49912711 | 49912656 | ID=MS.gene72300.t1.exon4;Parent=MS.gene72300.t1 |
| chr1.4 | CDS | 49912656 | 49912711 | 49912656 | ID=cds.MS.gene72300.t1;Parent=MS.gene72300.t1 |
| chr1.4 | exon | 49912141 | 49912355 | 49912141 | ID=MS.gene72300.t1.exon5;Parent=MS.gene72300.t1 |
| chr1.4 | CDS | 49912141 | 49912355 | 49912141 | ID=cds.MS.gene72300.t1;Parent=MS.gene72300.t1 |
| chr1.4 | exon | 49911122 | 49911334 | 49911122 | ID=MS.gene72300.t1.exon6;Parent=MS.gene72300.t1 |
| chr1.4 | CDS | 49911122 | 49911334 | 49911122 | ID=cds.MS.gene72300.t1;Parent=MS.gene72300.t1 |
| chr1.4 | exon | 49910834 | 49911031 | 49910834 | ID=MS.gene72300.t1.exon7;Parent=MS.gene72300.t1 |
| chr1.4 | CDS | 49910834 | 49911031 | 49910834 | ID=cds.MS.gene72300.t1;Parent=MS.gene72300.t1 |
| chr1.4 | exon | 49910574 | 49910714 | 49910574 | ID=MS.gene72300.t1.exon8;Parent=MS.gene72300.t1 |
| chr1.4 | CDS | 49910574 | 49910714 | 49910574 | ID=cds.MS.gene72300.t1;Parent=MS.gene72300.t1 |
| chr1.4 | exon | 49910216 | 49910332 | 49910216 | ID=MS.gene72300.t1.exon9;Parent=MS.gene72300.t1 |
| chr1.4 | CDS | 49910216 | 49910332 | 49910216 | ID=cds.MS.gene72300.t1;Parent=MS.gene72300.t1 |
| chr1.4 | exon | 49909990 | 49910124 | 49909990 | ID=MS.gene72300.t1.exon10;Parent=MS.gene72300.t1 |
| chr1.4 | CDS | 49909990 | 49910124 | 49909990 | ID=cds.MS.gene72300.t1;Parent=MS.gene72300.t1 |
| Gene Sequence |
| Protein sequence |
