Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72536.t1 | XP_013455381.1 | 88.6 | 281 | 24 | 2 | 1 | 280 | 1 | 274 | 4.90E-126 | 460.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72536.t1 | A0A072UIE0 | 88.6 | 281 | 24 | 2 | 1 | 280 | 1 | 274 | 3.5e-126 | 460.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050165 | MS.gene72536 | 0.801944 | 7.09E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene72536 | 0.826273 | 2.97E-54 | -1.69E-46 |
| MS.gene050904 | MS.gene72536 | 0.805448 | 1.33E-49 | -1.69E-46 |
| MS.gene051949 | MS.gene72536 | 0.812453 | 4.21E-51 | -1.69E-46 |
| MS.gene05912 | MS.gene72536 | 0.825425 | 4.72E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene72536 | 0.809302 | 2.02E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene72536 | 0.800579 | 1.35E-48 | -1.69E-46 |
| MS.gene060762 | MS.gene72536 | 0.811476 | 6.87E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72536.t1 | MTR_4g036465 | 88.612 | 281 | 24 | 2 | 1 | 280 | 1 | 274 | 3.34e-168 | 466 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72536.t1 | AT4G25170 | 37.179 | 234 | 119 | 6 | 64 | 277 | 116 | 341 | 8.87e-38 | 136 |
| MS.gene72536.t1 | AT4G25170 | 34.940 | 249 | 119 | 7 | 64 | 277 | 116 | 356 | 7.11e-34 | 126 |
| MS.gene72536.t1 | AT5G61490 | 36.538 | 208 | 104 | 3 | 71 | 277 | 75 | 255 | 3.27e-30 | 114 |
Find 58 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGTTTAAAACAGAAAA+AGG | 0.187566 | 4.1:-62939083 | None:intergenic |
| CAGCATAAGTGCAGGGTGTT+AGG | 0.262984 | 4.1:+62941265 | MS.gene72536:intron |
| CTTCACGTGCCGAGCTCCTT+AGG | 0.274000 | 4.1:+62941293 | MS.gene72536:CDS |
| GCCAGTAGTAGTAGTATTAT+TGG | 0.291374 | 4.1:-62939120 | None:intergenic |
| CCAGTAGTAGTAGTATTATT+GGG | 0.320185 | 4.1:-62939119 | None:intergenic |
| AAAACATTTGTTGTATTGTC+AGG | 0.320543 | 4.1:-62942257 | None:intergenic |
| TTCTTTCATGCTTTCGATCA+TGG | 0.323980 | 4.1:+62942427 | MS.gene72536:CDS |
| CTCGATTACTTCGATGAGTT+TGG | 0.325783 | 4.1:-62942306 | None:intergenic |
| TGATAAAGATTTGCGTTTGC+AGG | 0.343518 | 4.1:-62939018 | None:intergenic |
| TATCAACCGATGAAGCTGTT+TGG | 0.376110 | 4.1:+62941831 | MS.gene72536:CDS |
| ATCAACCGATGAAGCTGTTT+GGG | 0.379156 | 4.1:+62941832 | MS.gene72536:CDS |
| GCAGACTGATCCCTCTGTTC+AGG | 0.380216 | 4.1:+62941474 | MS.gene72536:CDS |
| TTAGAAGAATAAGAAGATAA+TGG | 0.391871 | 4.1:-62939050 | None:intergenic |
| AATAAGAAGATAATGGAAAA+GGG | 0.394078 | 4.1:-62939043 | None:intergenic |
| GAATAAGAAGATAATGGAAA+AGG | 0.394823 | 4.1:-62939044 | None:intergenic |
| CCCAATAATACTACTACTAC+TGG | 0.415755 | 4.1:+62939119 | MS.gene72536:CDS |
| AGCATAAGTGCAGGGTGTTA+GGG | 0.422717 | 4.1:+62941266 | MS.gene72536:intron |
| AATTATGTTGCGCCTAACTT+TGG | 0.436566 | 4.1:-62942478 | None:intergenic |
| AGGAGCTCGGCACGTGAAGC+AGG | 0.444376 | 4.1:-62941289 | None:intergenic |
| TATTCTCATCTTCAGAAACT+TGG | 0.451065 | 4.1:-62941360 | None:intergenic |
| CCGAAAATGCTACAGGATGA+TGG | 0.461296 | 4.1:+62941418 | MS.gene72536:CDS |
| GGATTATATGGAAACAAAGA+TGG | 0.462920 | 4.1:-62941397 | None:intergenic |
| ATGAAGTTGTTCAGCAACTC+AGG | 0.463056 | 4.1:+62941870 | MS.gene72536:CDS |
| TTCACGTGCCGAGCTCCTTA+GGG | 0.470566 | 4.1:+62941294 | MS.gene72536:CDS |
| GAAATTGAGCTAGGCAGTCT+TGG | 0.472920 | 4.1:+62941337 | MS.gene72536:CDS |
| GGTGTTGCTGAACCCCTCAT+TGG | 0.487318 | 4.1:+62939164 | MS.gene72536:CDS |
| ACCATTACAATGAGGCTTCG+CGG | 0.497783 | 4.1:+62938975 | None:intergenic |
| TCCTCCTCCTTCTCAGACTG+AGG | 0.507420 | 4.1:+62939187 | MS.gene72536:CDS |
| ATATAATCCGAAAATGCTAC+AGG | 0.513690 | 4.1:+62941411 | MS.gene72536:CDS |
| GGTGCATCGTAACCAAAGTT+AGG | 0.522125 | 4.1:+62942466 | MS.gene72536:CDS |
| AAACATTTGTTGTATTGTCA+GGG | 0.524197 | 4.1:-62942256 | None:intergenic |
| GTGCCGAGCTCCTTAGGGAC+AGG | 0.542730 | 4.1:+62941299 | MS.gene72536:CDS |
| AGAAGGAGGAGGACCAATGA+GGG | 0.542894 | 4.1:-62939177 | None:intergenic |
| TGTTGAAATACCTGTCCCTA+AGG | 0.548759 | 4.1:-62941309 | None:intergenic |
| AGCCTCCCAAACAGCTTCAT+CGG | 0.552589 | 4.1:-62941837 | None:intergenic |
| ATAAGAAGATAATGGAAAAG+GGG | 0.572203 | 4.1:-62939042 | None:intergenic |
| CAGCAACACCATCATCATCA+TGG | 0.574045 | 4.1:-62939151 | None:intergenic |
| CTGAAGATGAGAATATAGAC+TGG | 0.575112 | 4.1:+62941368 | MS.gene72536:CDS |
| AACAAACTAGAAATTGAGCT+AGG | 0.577265 | 4.1:+62941328 | MS.gene72536:CDS |
| CAGTAGTAGTAGTATTATTG+GGG | 0.585051 | 4.1:-62939118 | None:intergenic |
| TGAAGTTGTTCAGCAACTCA+GGG | 0.586059 | 4.1:+62941871 | MS.gene72536:CDS |
| ATGCTCTCTCGTCTCTTCAA+CGG | 0.587737 | 4.1:+62939216 | MS.gene72536:CDS |
| GATCATGGTCTTGTTGATTG+TGG | 0.588306 | 4.1:+62942442 | MS.gene72536:CDS |
| ATAGACTGCACCTGAACAGA+GGG | 0.590888 | 4.1:-62941484 | None:intergenic |
| ATACCTGTCCCTAAGGAGCT+CGG | 0.592229 | 4.1:-62941302 | None:intergenic |
| TTTGCGTTTGCAGGTTCGTG+TGG | 0.604940 | 4.1:-62939009 | None:intergenic |
| TCATGAACCTCAGTCTGAGA+AGG | 0.608952 | 4.1:-62939194 | None:intergenic |
| CATGGTCTTGTTGATTGTGG+TGG | 0.612289 | 4.1:+62942445 | MS.gene72536:CDS |
| ACCTCAGTCTGAGAAGGAGG+AGG | 0.614509 | 4.1:-62939188 | None:intergenic |
| GAGAAGGAGGAGGACCAATG+AGG | 0.618951 | 4.1:-62939178 | None:intergenic |
| TGAACCTCAGTCTGAGAAGG+AGG | 0.629101 | 4.1:-62939191 | None:intergenic |
| GATGCTATCCATGATGATGA+TGG | 0.636543 | 4.1:+62939143 | MS.gene72536:CDS |
| AACCGATGAAGCTGTTTGGG+AGG | 0.644231 | 4.1:+62941835 | MS.gene72536:CDS |
| CATAGACTGCACCTGAACAG+AGG | 0.657496 | 4.1:-62941485 | None:intergenic |
| GAAGGAGGAGGACCAATGAG+GGG | 0.689346 | 4.1:-62939176 | None:intergenic |
| AAGTTGTTCAGCAACTCAGG+GGG | 0.698699 | 4.1:+62941873 | MS.gene72536:CDS |
| GAAGTTGTTCAGCAACTCAG+GGG | 0.702778 | 4.1:+62941872 | MS.gene72536:CDS |
| AGTAGTAGTAGTATTATTGG+GGG | 0.747404 | 4.1:-62939117 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAATATGAGATTAATAT+AGG | - | chr4.1:62940011-62940030 | None:intergenic | 15.0% |
| !! | AATTATGTGATTATTAAAAG+CGG | - | chr4.1:62939753-62939772 | None:intergenic | 15.0% |
| !! | AGAGTTAAAAAAAATGATAT+AGG | + | chr4.1:62940035-62940054 | MS.gene72536:intron | 15.0% |
| !! | TTAAAATTCATATAACAGTA+TGG | - | chr4.1:62940554-62940573 | None:intergenic | 15.0% |
| !!! | AAATTTTTTTATCACAATCT+TGG | - | chr4.1:62942339-62942358 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCGAATTATTAG+CGG | - | chr4.1:62939849-62939868 | None:intergenic | 15.0% |
| !!! | TGAATTTGATTTTTTGAATT+CGG | + | chr4.1:62940389-62940408 | MS.gene72536:intron | 15.0% |
| !!! | TTATAGATATTTGATAACTA+AGG | + | chr4.1:62941778-62941797 | MS.gene72536:intron | 15.0% |
| !!! | TTTTATTGTTTAAGTGATAT+TGG | + | chr4.1:62939312-62939331 | MS.gene72536:intron | 15.0% |
| !!! | TTTTCGTTTTCTTTAATATT+TGG | + | chr4.1:62941922-62941941 | MS.gene72536:intron | 15.0% |
| !! | AAACTATTGTTTAGCAAATT+TGG | + | chr4.1:62941213-62941232 | MS.gene72536:intron | 20.0% |
| !! | AACTAGTAGTTAAAATTTAG+TGG | + | chr4.1:62941006-62941025 | MS.gene72536:intron | 20.0% |
| !! | ATATAACAATAGCTTCTATT+CGG | - | chr4.1:62941714-62941733 | None:intergenic | 20.0% |
| !! | ATTTGACTGATTAAAAACTT+TGG | + | chr4.1:62940064-62940083 | MS.gene72536:intron | 20.0% |
| !! | TGAGATTAATATAGGATATA+TGG | - | chr4.1:62940003-62940022 | None:intergenic | 20.0% |
| !! | TTAGAAGAATAAGAAGATAA+TGG | - | chr4.1:62939053-62939072 | None:intergenic | 20.0% |
| !!! | AAAGAGTTTAAAACAGAAAA+AGG | - | chr4.1:62939086-62939105 | None:intergenic | 20.0% |
| !!! | AATAAGAAGATAATGGAAAA+GGG | - | chr4.1:62939046-62939065 | None:intergenic | 20.0% |
| !!! | AATTGAGATTTTGATTATGT+TGG | - | chr4.1:62940745-62940764 | None:intergenic | 20.0% |
| !!! | ATACAACAAATGTTTTGATT+TGG | + | chr4.1:62942264-62942283 | MS.gene72536:CDS | 20.0% |
| !!! | ATGTTTTCTCAAATTGTTAT+TGG | + | chr4.1:62940658-62940677 | MS.gene72536:intron | 20.0% |
| !!! | ATTTTCATCTAAAATTTGCT+CGG | + | chr4.1:62940508-62940527 | MS.gene72536:intron | 20.0% |
| !!! | CATAATTATATTGGTAATGA+TGG | + | chr4.1:62939953-62939972 | MS.gene72536:intron | 20.0% |
| !!! | CATACATAAGCTATTTTTAT+AGG | + | chr4.1:62939419-62939438 | MS.gene72536:intron | 20.0% |
| !!! | GTAGTATTTTGAATTCAATT+TGG | + | chr4.1:62940210-62940229 | MS.gene72536:intron | 20.0% |
| ! | AAAATAAGCTGTAGCTATAT+TGG | + | chr4.1:62939591-62939610 | MS.gene72536:intron | 25.0% |
| ! | AAACACAACACAAATTAAGA+CGG | - | chr4.1:62940286-62940305 | None:intergenic | 25.0% |
| ! | AAAGAGATAATTTAACCATG+AGG | + | chr4.1:62941737-62941756 | MS.gene72536:intron | 25.0% |
| ! | ACCAATATAATTATGAAGCA+CGG | - | chr4.1:62939948-62939967 | None:intergenic | 25.0% |
| ! | ATTATAGAATTATGACCTAC+TGG | + | chr4.1:62942147-62942166 | MS.gene72536:intron | 25.0% |
| ! | CTTCAACGGTAAAAATATAT+TGG | + | chr4.1:62939230-62939249 | MS.gene72536:intron | 25.0% |
| ! | GAGTACATAGATTAGATTTA+TGG | + | chr4.1:62942092-62942111 | MS.gene72536:intron | 25.0% |
| ! | TATATCTGCATGATGTTATT+CGG | + | chr4.1:62942056-62942075 | MS.gene72536:intron | 25.0% |
| ! | TGAATTCAATTTGGCAAATT+TGG | + | chr4.1:62940219-62940238 | MS.gene72536:intron | 25.0% |
| ! | TGATACATTCTTATATGTCA+TGG | + | chr4.1:62940812-62940831 | MS.gene72536:intron | 25.0% |
| ! | TTCAGTGTAATTATAAGTGT+CGG | + | chr4.1:62939771-62939790 | MS.gene72536:intron | 25.0% |
| ! | TTCAGTGTAATTATTAGTGT+CGG | + | chr4.1:62939876-62939895 | MS.gene72536:intron | 25.0% |
| !! | ATATTGGTAATCATGGTATA+AGG | + | chr4.1:62939328-62939347 | MS.gene72536:intron | 25.0% |
| !! | TTAAGTGATATTGGTAATCA+TGG | + | chr4.1:62939321-62939340 | MS.gene72536:intron | 25.0% |
| !!! | AAAACATTTGTTGTATTGTC+AGG | - | chr4.1:62942260-62942279 | None:intergenic | 25.0% |
| !!! | AAACATTTGTTGTATTGTCA+GGG | - | chr4.1:62942259-62942278 | None:intergenic | 25.0% |
| !!! | AACAATTTGCTGAAGTTTTT+CGG | + | chr4.1:62941665-62941684 | MS.gene72536:intron | 25.0% |
| !!! | ATAAGAAGATAATGGAAAAG+GGG | - | chr4.1:62939045-62939064 | None:intergenic | 25.0% |
| !!! | CATAAGCTATTTTTATAGGA+AGG | + | chr4.1:62939423-62939442 | MS.gene72536:intron | 25.0% |
| !!! | GAATAAGAAGATAATGGAAA+AGG | - | chr4.1:62939047-62939066 | None:intergenic | 25.0% |
| !!! | TGTGTTTCATAGATTTTAAC+TGG | + | chr4.1:62940718-62940737 | MS.gene72536:intron | 25.0% |
| AACAAACTAGAAATTGAGCT+AGG | + | chr4.1:62941328-62941347 | MS.gene72536:CDS | 30.0% | |
| AGTAGTAGTAGTATTATTGG+GGG | - | chr4.1:62939120-62939139 | None:intergenic | 30.0% | |
| ATATAATCCGAAAATGCTAC+AGG | + | chr4.1:62941411-62941430 | MS.gene72536:CDS | 30.0% | |
| ATATCTGCATGATGTTATTC+GGG | + | chr4.1:62942057-62942076 | MS.gene72536:intron | 30.0% | |
| CAGTAGTAGTAGTATTATTG+GGG | - | chr4.1:62939121-62939140 | None:intergenic | 30.0% | |
| CCAGTAGTAGTAGTATTATT+GGG | - | chr4.1:62939122-62939141 | None:intergenic | 30.0% | |
| GGATTATATGGAAACAAAGA+TGG | - | chr4.1:62941400-62941419 | None:intergenic | 30.0% | |
| TATTCTCATCTTCAGAAACT+TGG | - | chr4.1:62941363-62941382 | None:intergenic | 30.0% | |
| TCCGTGCTTCATAATTATAT+TGG | + | chr4.1:62939944-62939963 | MS.gene72536:intron | 30.0% | |
| ! | TGAATTTGATTAGCTGATGT+TGG | + | chr4.1:62940127-62940146 | MS.gene72536:intron | 30.0% |
| ! | TGTAGCATTTTCGGATTATA+TGG | - | chr4.1:62941412-62941431 | None:intergenic | 30.0% |
| ! | TGTGTTTTGTATTCAATTGC+TGG | + | chr4.1:62940464-62940483 | MS.gene72536:intron | 30.0% |
| ! | TTAGCTGATGTTGGAATTTT+AGG | + | chr4.1:62940136-62940155 | MS.gene72536:intron | 30.0% |
| !!! | ATTTTTTGAATTCGGATGTG+AGG | + | chr4.1:62940397-62940416 | MS.gene72536:intron | 30.0% |
| AATGACCGTAATGACTAATG+AGG | - | chr4.1:62941061-62941080 | None:intergenic | 35.0% | |
| ATAAATCTCAGCATAAGTGC+AGG | + | chr4.1:62941257-62941276 | MS.gene72536:intron | 35.0% | |
| ATTATTAAAAGCGGCAACTG+TGG | - | chr4.1:62939744-62939763 | None:intergenic | 35.0% | |
| CATTAGTCATTACGGTCATT+AGG | + | chr4.1:62941061-62941080 | MS.gene72536:intron | 35.0% | |
| CCATACCTCATTAGTCATTA+CGG | + | chr4.1:62941053-62941072 | MS.gene72536:intron | 35.0% | |
| CCCAATAATACTACTACTAC+TGG | + | chr4.1:62939119-62939138 | MS.gene72536:CDS | 35.0% | |
| CTGAAGATGAGAATATAGAC+TGG | + | chr4.1:62941368-62941387 | MS.gene72536:CDS | 35.0% | |
| GATCTCTAATTCTGAATTCC+TGG | - | chr4.1:62940954-62940973 | None:intergenic | 35.0% | |
| GCCAGTAGTAGTAGTATTAT+TGG | - | chr4.1:62939123-62939142 | None:intergenic | 35.0% | |
| TAAATCTCAGCATAAGTGCA+GGG | + | chr4.1:62941258-62941277 | MS.gene72536:intron | 35.0% | |
| TAAGTTGTGTGAGACTGTTT+AGG | - | chr4.1:62939682-62939701 | None:intergenic | 35.0% | |
| TATCTGCATGATGTTATTCG+GGG | + | chr4.1:62942058-62942077 | MS.gene72536:intron | 35.0% | |
| TGATAAAGATTTGCGTTTGC+AGG | - | chr4.1:62939021-62939040 | None:intergenic | 35.0% | |
| TTATTAAAAGCGGCAACTGT+GGG | - | chr4.1:62939743-62939762 | None:intergenic | 35.0% | |
| TTCTTTCATGCTTTCGATCA+TGG | + | chr4.1:62942427-62942446 | MS.gene72536:CDS | 35.0% | |
| ! | ATTTGAGATGCACTTCATAC+TGG | + | chr4.1:62941592-62941611 | MS.gene72536:intron | 35.0% |
| !! | TCATGGTATAAGGCTTTGTT+TGG | + | chr4.1:62939338-62939357 | MS.gene72536:intron | 35.0% |
| !! | TCGATAGCTTTGTTAATGTG+TGG | + | chr4.1:62941953-62941972 | MS.gene72536:intron | 35.0% |
| ACAGACACTTAACACTGAAC+AGG | - | chr4.1:62940701-62940720 | None:intergenic | 40.0% | |
| AGCATTTCAGTGCCTAATCA+TGG | + | chr4.1:62940866-62940885 | MS.gene72536:intron | 40.0% | |
| ATCAACCGATGAAGCTGTTT+GGG | + | chr4.1:62941832-62941851 | MS.gene72536:CDS | 40.0% | |
| ATGAAGTTGTTCAGCAACTC+AGG | + | chr4.1:62941870-62941889 | MS.gene72536:CDS | 40.0% | |
| CCGTAATGACTAATGAGGTA+TGG | - | chr4.1:62941056-62941075 | None:intergenic | 40.0% | |
| CTCACACAACTTATGTCAGT+AGG | + | chr4.1:62939689-62939708 | MS.gene72536:intron | 40.0% | |
| CTCGATTACTTCGATGAGTT+TGG | - | chr4.1:62942309-62942328 | None:intergenic | 40.0% | |
| CTGAAATCAGTAAAGCCTCA+TGG | - | chr4.1:62941755-62941774 | None:intergenic | 40.0% | |
| GATGGGCATAAACACTAATC+TGG | + | chr4.1:62942172-62942191 | MS.gene72536:intron | 40.0% | |
| GCACTGAAATGCTTGCAAAA+TGG | - | chr4.1:62940859-62940878 | None:intergenic | 40.0% | |
| TATCAACCGATGAAGCTGTT+TGG | + | chr4.1:62941831-62941850 | MS.gene72536:CDS | 40.0% | |
| TGAAGTTGTTCAGCAACTCA+GGG | + | chr4.1:62941871-62941890 | MS.gene72536:CDS | 40.0% | |
| TGTTGAAATACCTGTCCCTA+AGG | - | chr4.1:62941312-62941331 | None:intergenic | 40.0% | |
| ! | AAGTTTGCTCACTGCAATGT+TGG | + | chr4.1:62940355-62940374 | MS.gene72536:intron | 40.0% |
| ! | AATTATGACCTACTGGCTGA+TGG | + | chr4.1:62942154-62942173 | MS.gene72536:intron | 40.0% |
| ! | ATTATGACCTACTGGCTGAT+GGG | + | chr4.1:62942155-62942174 | MS.gene72536:intron | 40.0% |
| ! | CATGTGGTGCATAAGACTTT+TGG | - | chr4.1:62940918-62940937 | None:intergenic | 40.0% |
| ! | CCATCATCCTGTAGCATTTT+CGG | - | chr4.1:62941421-62941440 | None:intergenic | 40.0% |
| ! | GATGCTATCCATGATGATGA+TGG | + | chr4.1:62939143-62939162 | MS.gene72536:CDS | 40.0% |
| !! | GATCATGGTCTTGTTGATTG+TGG | + | chr4.1:62942442-62942461 | MS.gene72536:CDS | 40.0% |
| AACGCAACACTGACACTTTG+TGG | + | chr4.1:62940620-62940639 | MS.gene72536:intron | 45.0% | |
| AACTCAACGACGCCATGATT+AGG | - | chr4.1:62940881-62940900 | None:intergenic | 45.0% | |
| AAGTTGTTCAGCAACTCAGG+GGG | + | chr4.1:62941873-62941892 | MS.gene72536:CDS | 45.0% | |
| ACATGATGAGCTTAGCTACC+AGG | + | chr4.1:62940933-62940952 | MS.gene72536:intron | 45.0% | |
| AGCTATAGCGCTATGCATAG+CGG | + | chr4.1:62941636-62941655 | MS.gene72536:intron | 45.0% | |
| ATAGACTGCACCTGAACAGA+GGG | - | chr4.1:62941487-62941506 | None:intergenic | 45.0% | |
| ATGCTCTCTCGTCTCTTCAA+CGG | + | chr4.1:62939216-62939235 | MS.gene72536:CDS | 45.0% | |
| CAGCAACACCATCATCATCA+TGG | - | chr4.1:62939154-62939173 | None:intergenic | 45.0% | |
| CCGAAAATGCTACAGGATGA+TGG | + | chr4.1:62941418-62941437 | MS.gene72536:CDS | 45.0% | |
| GAAATTGAGCTAGGCAGTCT+TGG | + | chr4.1:62941337-62941356 | MS.gene72536:CDS | 45.0% | |
| GAAGTTGTTCAGCAACTCAG+GGG | + | chr4.1:62941872-62941891 | MS.gene72536:CDS | 45.0% | |
| GCTCTCTGAATTAGTGGTGA+GGG | + | chr4.1:62941987-62942006 | MS.gene72536:intron | 45.0% | |
| TATGAAGCACGGACACTCTT+CGG | - | chr4.1:62939937-62939956 | None:intergenic | 45.0% | |
| TCATGAACCTCAGTCTGAGA+AGG | - | chr4.1:62939197-62939216 | None:intergenic | 45.0% | |
| TCTCACGCTCTCTGAATTAG+TGG | + | chr4.1:62941981-62942000 | MS.gene72536:intron | 45.0% | |
| TGCATGATGTTATTCGGGGA+AGG | + | chr4.1:62942062-62942081 | MS.gene72536:intron | 45.0% | |
| TGGTAGCTAAGCTCATCATG+TGG | - | chr4.1:62940934-62940953 | None:intergenic | 45.0% | |
| ! | ACAAAGTGTCAGTGTTGCGT+TGG | - | chr4.1:62940621-62940640 | None:intergenic | 45.0% |
| ! | AGCATAAGTGCAGGGTGTTA+GGG | + | chr4.1:62941266-62941285 | MS.gene72536:intron | 45.0% |
| ! | CTGAAGTGTCAGAGCTACAT+AGG | - | chr4.1:62940577-62940596 | None:intergenic | 45.0% |
| !! | CATGGTCTTGTTGATTGTGG+TGG | + | chr4.1:62942445-62942464 | MS.gene72536:CDS | 45.0% |
| !! | CTATGTAGCTCTGACACTTC+AGG | + | chr4.1:62940575-62940594 | MS.gene72536:intron | 45.0% |
| AACCGATGAAGCTGTTTGGG+AGG | + | chr4.1:62941835-62941854 | MS.gene72536:CDS | 50.0% | |
| AGAAGGAGGAGGACCAATGA+GGG | - | chr4.1:62939180-62939199 | None:intergenic | 50.0% | |
| AGCCTCCCAAACAGCTTCAT+CGG | - | chr4.1:62941840-62941859 | None:intergenic | 50.0% | |
| ATACCTGTCCCTAAGGAGCT+CGG | - | chr4.1:62941305-62941324 | None:intergenic | 50.0% | |
| CATAGACTGCACCTGAACAG+AGG | - | chr4.1:62941488-62941507 | None:intergenic | 50.0% | |
| CGCTCTCTGAATTAGTGGTG+AGG | + | chr4.1:62941986-62942005 | MS.gene72536:intron | 50.0% | |
| CTCTGTTCAGGTGCAGTCTA+TGG | + | chr4.1:62941486-62941505 | MS.gene72536:intron | 50.0% | |
| GTTTATGCCCATCAGCCAGT+AGG | - | chr4.1:62942165-62942184 | None:intergenic | 50.0% | |
| TGAACCTCAGTCTGAGAAGG+AGG | - | chr4.1:62939194-62939213 | None:intergenic | 50.0% | |
| TTTGCGTTTGCAGGTTCGTG+TGG | - | chr4.1:62939012-62939031 | None:intergenic | 50.0% | |
| ! | CAGCATAAGTGCAGGGTGTT+AGG | + | chr4.1:62941265-62941284 | MS.gene72536:intron | 50.0% |
| ACCTCAGTCTGAGAAGGAGG+AGG | - | chr4.1:62939191-62939210 | None:intergenic | 55.0% | |
| CTCAGGGGGTCAATATCTGC+AGG | + | chr4.1:62941887-62941906 | MS.gene72536:CDS | 55.0% | |
| GAAGGAGGAGGACCAATGAG+GGG | - | chr4.1:62939179-62939198 | None:intergenic | 55.0% | |
| GAGAAGGAGGAGGACCAATG+AGG | - | chr4.1:62939181-62939200 | None:intergenic | 55.0% | |
| GCACGGACACTCTTCGGATT+AGG | - | chr4.1:62939931-62939950 | None:intergenic | 55.0% | |
| GCAGACTGATCCCTCTGTTC+AGG | + | chr4.1:62941474-62941493 | MS.gene72536:CDS | 55.0% | |
| GGGGGTCAATATCTGCAGGT+TGG | + | chr4.1:62941891-62941910 | MS.gene72536:intron | 55.0% | |
| TCCTCCTCCTTCTCAGACTG+AGG | + | chr4.1:62939187-62939206 | MS.gene72536:CDS | 55.0% | |
| TTCACGTGCCGAGCTCCTTA+GGG | + | chr4.1:62941294-62941313 | MS.gene72536:CDS | 55.0% | |
| ! | TCTTCGGATTAGGCGTGTCC+CGG | - | chr4.1:62939921-62939940 | None:intergenic | 55.0% |
| !! | GGTGTTGCTGAACCCCTCAT+TGG | + | chr4.1:62939164-62939183 | MS.gene72536:CDS | 55.0% |
| CTTCACGTGCCGAGCTCCTT+AGG | + | chr4.1:62941293-62941312 | MS.gene72536:CDS | 60.0% | |
| GATTAGGCGTGTCCCGGTGT+CGG | - | chr4.1:62939915-62939934 | None:intergenic | 60.0% | |
| GCGGCAACTGTGGGTCTGTT+TGG | - | chr4.1:62939734-62939753 | None:intergenic | 60.0% | |
| TCCGACATCGGGACACGACA+CGG | + | chr4.1:62939806-62939825 | MS.gene72536:intron | 60.0% | |
| TCCGTGTCGTGTCCCGATGT+CGG | - | chr4.1:62939810-62939829 | None:intergenic | 60.0% | |
| AGGAGCTCGGCACGTGAAGC+AGG | - | chr4.1:62941292-62941311 | None:intergenic | 65.0% | |
| GTGCCGAGCTCCTTAGGGAC+AGG | + | chr4.1:62941299-62941318 | MS.gene72536:CDS | 65.0% | |
| TCCCGATGTCGGACACGACG+CGG | - | chr4.1:62939799-62939818 | None:intergenic | 65.0% | |
| TGCCGCGTCGTGTCCGACAT+CGG | + | chr4.1:62939794-62939813 | MS.gene72536:intron | 65.0% | |
| GCCGCGTCGTGTCCGACATC+GGG | + | chr4.1:62939795-62939814 | MS.gene72536:intron | 70.0% | |
| TGCCGCGTCGTGTCCGACAC+CGG | + | chr4.1:62939899-62939918 | MS.gene72536:intron | 70.0% | |
| ! | TCCCGGTGTCGGACACGACG+CGG | - | chr4.1:62939904-62939923 | None:intergenic | 70.0% |
| GCCGCGTCGTGTCCGACACC+GGG | + | chr4.1:62939900-62939919 | MS.gene72536:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 62938984 | 62942487 | 62938984 | ID=MS.gene72536 |
| chr4.1 | mRNA | 62938984 | 62942487 | 62938984 | ID=MS.gene72536.t1;Parent=MS.gene72536 |
| chr4.1 | exon | 62938984 | 62939237 | 62938984 | ID=MS.gene72536.t1.exon1;Parent=MS.gene72536.t1 |
| chr4.1 | CDS | 62938984 | 62939237 | 62938984 | ID=cds.MS.gene72536.t1;Parent=MS.gene72536.t1 |
| chr4.1 | exon | 62941279 | 62941495 | 62941279 | ID=MS.gene72536.t1.exon2;Parent=MS.gene72536.t1 |
| chr4.1 | CDS | 62941279 | 62941495 | 62941279 | ID=cds.MS.gene72536.t1;Parent=MS.gene72536.t1 |
| chr4.1 | exon | 62941815 | 62941908 | 62941815 | ID=MS.gene72536.t1.exon3;Parent=MS.gene72536.t1 |
| chr4.1 | CDS | 62941815 | 62941908 | 62941815 | ID=cds.MS.gene72536.t1;Parent=MS.gene72536.t1 |
| chr4.1 | exon | 62942210 | 62942487 | 62942210 | ID=MS.gene72536.t1.exon4;Parent=MS.gene72536.t1 |
| chr4.1 | CDS | 62942210 | 62942487 | 62942210 | ID=cds.MS.gene72536.t1;Parent=MS.gene72536.t1 |
| Gene Sequence |
| Protein sequence |
