AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051949


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051949.t1 MTR_2g099910 93.805 339 13 1 5 335 1 339 0.0 652
MS.gene051949.t1 MTR_2g099910 95.219 251 12 0 5 255 1 251 3.60e-179 496
MS.gene051949.t1 MTR_2g099910 91.915 235 16 1 5 239 1 232 1.22e-159 446
MS.gene051949.t1 MTR_8g028120 54.225 284 121 2 51 326 2 284 3.16e-98 292
MS.gene051949.t1 MTR_8g102470 28.254 315 210 4 21 326 13 320 2.69e-36 134
MS.gene051949.t1 MTR_8g102470 29.167 288 194 3 48 326 10 296 2.81e-35 130
MS.gene051949.t1 MTR_8g088900 33.058 242 159 2 48 287 12 252 2.44e-34 129
MS.gene051949.t1 MTR_2g030400 30.719 306 179 8 52 327 42 344 1.28e-27 110
MS.gene051949.t1 MTR_2g030400 33.641 217 130 3 52 255 42 257 6.93e-27 107
MS.gene051949.t1 MTR_2g030400 33.641 217 130 3 52 255 42 257 1.21e-26 107
MS.gene051949.t1 MTR_2g030400 33.641 217 130 3 52 255 42 257 1.54e-26 107
MS.gene051949.t1 MTR_6g069685 22.603 292 215 3 47 327 322 613 5.99e-18 85.1
MS.gene051949.t1 MTR_6g069685 21.017 295 222 5 46 329 1 295 3.70e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051949.t1 AT1G17650 80.634 284 47 1 52 327 10 293 1.19e-166 466
MS.gene051949.t1 AT1G17650 80.634 284 47 1 52 327 69 352 4.11e-165 464
MS.gene051949.t1 AT3G25530 56.338 284 116 1 51 326 2 285 5.05e-106 312
MS.gene051949.t1 AT3G25530 54.577 284 110 2 51 326 2 274 8.35e-102 301
MS.gene051949.t1 AT3G25530 57.282 206 88 0 51 256 2 207 1.46e-77 236
MS.gene051949.t1 AT4G29120 31.250 288 188 3 48 326 36 322 1.29e-36 134
MS.gene051949.t1 AT4G20930 31.629 313 174 10 52 334 40 342 2.57e-32 123
MS.gene051949.t1 AT1G71170 27.208 283 201 2 48 326 12 293 3.31e-25 103
MS.gene051949.t1 AT4G20930 30.292 274 151 10 91 334 7 270 3.94e-23 97.4
MS.gene051949.t1 AT1G71180 28.384 229 163 1 48 276 33 260 3.42e-21 92.8
MS.gene051949.t1 AT1G18270 24.830 294 208 4 47 327 317 610 6.81e-19 88.6
MS.gene051949.t1 AT1G18270 23.664 262 190 4 52 303 5 266 2.51e-13 71.6
MS.gene051949.t1 AT1G18270 24.830 294 208 4 47 327 317 610 8.37e-19 88.2
MS.gene051949.t1 AT1G18270 23.664 262 190 4 52 303 5 266 3.01e-13 71.2
MS.gene051949.t1 AT1G18270 24.830 294 208 4 47 327 317 610 8.74e-19 88.2
MS.gene051949.t1 AT1G18270 23.664 262 190 4 52 303 5 266 3.29e-13 71.2
MS.gene051949.t1 AT1G18270 24.830 294 208 4 47 327 318 611 8.75e-19 88.2
MS.gene051949.t1 AT1G18270 23.954 263 189 5 52 303 5 267 9.07e-12 66.6

Find 81 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTACAGGCTCCAGTTTC+AGG 0.167120 2.2:-3152666 MS.gene051949:intron
GACACTTCTAAATTGATTAA+TGG 0.238964 2.2:-3152866 MS.gene051949:CDS
AATACCTCCACTAGTACTTT+TGG 0.295746 2.2:+3152039 None:intergenic
TGAAACGGTTGCTCCGTTCT+TGG 0.330518 2.2:-3152400 MS.gene051949:CDS
TGCTCCGTTCTTGGACATCA+TGG 0.351778 2.2:-3152391 MS.gene051949:CDS
TACTTCTGAGTGAGAAAGTT+GGG 0.371641 2.2:-3152068 MS.gene051949:CDS
CGAGTACATTGGAGCACTAA+TGG 0.376150 2.2:+3151862 None:intergenic
TACCTTGGCGATGTTGGAAA+TGG 0.377158 2.2:-3152255 MS.gene051949:CDS
TTGATCTGACAGTTTGGAAT+AGG 0.382727 2.2:-3153954 MS.gene051949:CDS
TCCATTGGTTTATAGTATGA+TGG 0.398814 2.2:-3152109 MS.gene051949:intron
CGCTGCAATCGGAATAGGTT+GGG 0.407650 2.2:+3151653 None:intergenic
TTGGCTCCCAAGCTGATTAG+AGG 0.408502 2.2:+3153913 None:intergenic
TGATGAGATTTAGAGCCATT+GGG 0.412792 2.2:+3154234 None:intergenic
TTGATGAGATTTAGAGCCAT+TGG 0.428876 2.2:+3154233 None:intergenic
ATCAATTGTCCATCTTCTGC+TGG 0.438341 2.2:+3152633 None:intergenic
TCGTTAGCAGCCGCTGCAAT+CGG 0.444539 2.2:+3151642 None:intergenic
GCTCTAAATCTCATCAAAGC+TGG 0.445265 2.2:-3154227 MS.gene051949:CDS
GCAGCCGCTGCAATCGGAAT+AGG 0.449872 2.2:+3151648 None:intergenic
GCTCCGTTCTTGGACATCAT+GGG 0.452907 2.2:-3152390 MS.gene051949:CDS
CACAGGAAGGATGAGTAGTA+TGG 0.456314 2.2:-3154531 None:intergenic
CAAGATGCCGCTACTTCATC+GGG 0.467645 2.2:+3153735 None:intergenic
AATATACACACCGCACTTTG+AGG 0.467951 2.2:+3153684 None:intergenic
TAGAGGATCACACTTGCTCT+TGG 0.474416 2.2:+3153930 None:intergenic
GGAAAGCATGGAGTTGCTAA+TGG 0.475897 2.2:-3153580 MS.gene051949:CDS
AATGGAATCGGTCCAGGAAA+AGG 0.477706 2.2:-3153562 MS.gene051949:CDS
CATGGAGTTGCTAATGGAAT+CGG 0.492082 2.2:-3153574 MS.gene051949:CDS
TGGATAATTTGACTGTATCA+TGG 0.493372 2.2:+3151826 None:intergenic
CAGAAGTAAACCTTCAGAAA+AGG 0.493510 2.2:+3152083 None:intergenic
CGACAGAAATCTTTATGAAA+CGG 0.495971 2.2:-3152415 MS.gene051949:CDS
ACAAGATGCCGCTACTTCAT+CGG 0.496201 2.2:+3153734 None:intergenic
GTTGAAGTGATGAAGGGAAA+AGG 0.504740 2.2:+3154472 None:intergenic
TGTGATCCTCTAATCAGCTT+GGG 0.506829 2.2:-3153919 MS.gene051949:CDS
CAGGGATTCAGTCCTCTCCA+CGG 0.506919 2.2:-3154289 MS.gene051949:CDS
AAATGTGGCGAGAGAAGCGC+GGG 0.506987 2.2:+3154447 None:intergenic
GTAGAGTTGATCTGACAGTT+TGG 0.512937 2.2:-3153960 MS.gene051949:intron
CAATTGATATTTCTTACAGC+AGG 0.514852 2.2:-3152618 MS.gene051949:intron
GTTGCTAATGGAATCGGTCC+AGG 0.515390 2.2:-3153568 MS.gene051949:CDS
GCGGGGAGTTGAAGTGATGA+AGG 0.515554 2.2:+3154465 None:intergenic
CTCTAAATCTCATCAAAGCT+GGG 0.519329 2.2:-3154226 MS.gene051949:intron
GCTTGTTGTCAATATGATCA+TGG 0.529260 2.2:-3152220 MS.gene051949:CDS
TTACTTCTGAGTGAGAAAGT+TGG 0.537292 2.2:-3152069 MS.gene051949:CDS
GCCGCTACTTCATCGGGAGA+AGG 0.541672 2.2:+3153741 None:intergenic
ATTCAGTCCTCTCCACGGGT+TGG 0.546207 2.2:-3154284 MS.gene051949:CDS
AGGGATTCAGTCCTCTCCAC+GGG 0.550480 2.2:-3154288 MS.gene051949:CDS
CGGAATCATGGGCACCCCAA+TGG 0.551195 2.2:-3154249 MS.gene051949:CDS
GTGTGATCCTCTAATCAGCT+TGG 0.553137 2.2:-3153920 MS.gene051949:CDS
ATGGAATCGGTCCAGGAAAA+GGG 0.557465 2.2:-3153561 MS.gene051949:intron
TAATTTGACTGTATCATGGA+TGG 0.558193 2.2:+3151830 None:intergenic
ACAATAATACCTTGTCCTTG+AGG 0.560023 2.2:+3154401 None:intergenic
CTCCGTTCTTGGACATCATG+GGG 0.560146 2.2:-3152389 MS.gene051949:CDS
GGGCCTTTCATCGAGTACAT+TGG 0.561131 2.2:+3151851 None:intergenic
CCGCTGCAATCGGAATAGGT+TGG 0.566277 2.2:+3151652 None:intergenic
AATGGACACATAAAATCCAC+TGG 0.570947 2.2:-3152848 MS.gene051949:CDS
CTTGTTGTCAATATGATCAT+GGG 0.573368 2.2:-3152219 MS.gene051949:CDS
GCTCCAATGTACTCGATGAA+AGG 0.578127 2.2:-3151854 MS.gene051949:CDS
TTGTCAATATGATCATGGGC+AGG 0.583553 2.2:-3152215 MS.gene051949:intron
ACTTTGAGGATCAGCAAGCA+TGG 0.590719 2.2:+3153698 None:intergenic
AATTTGACTGTATCATGGAT+GGG 0.592762 2.2:+3151831 None:intergenic
GATGTTGCTTGTGGAAAGCA+TGG 0.592782 2.2:-3153592 MS.gene051949:CDS
TCTGCTTCTCAACAACCTCA+AGG 0.594192 2.2:-3154416 MS.gene051949:CDS
ACCTTCTCCCGATGAAGTAG+CGG 0.594627 2.2:-3153742 MS.gene051949:CDS
AAGCAGAAACATTGGAAATG+TGG 0.595633 2.2:+3154432 None:intergenic
GATGAGATTTAGAGCCATTG+GGG 0.598554 2.2:+3154235 None:intergenic
GCTAGATCCAAAAGTACTAG+TGG 0.600091 2.2:-3152046 MS.gene051949:CDS
TCCCCTAAAACATCAGCAGA+AGG 0.603322 2.2:-3151795 MS.gene051949:CDS
TTGTTGAGAAGCAGAAACAT+TGG 0.605414 2.2:+3154424 None:intergenic
GGATGTTTCAACTGTTGATG+TGG 0.612786 2.2:-3152888 MS.gene051949:CDS
TTGGGGTGCCCATGATTCCG+AGG 0.621778 2.2:+3154252 None:intergenic
CCAACCTATTCCGATTGCAG+CGG 0.624141 2.2:-3151652 MS.gene051949:CDS
CGGGGAGTTGAAGTGATGAA+GGG 0.624448 2.2:+3154466 None:intergenic
TATCAGGTGGATGTTGCTTG+TGG 0.626476 2.2:-3153601 MS.gene051949:intron
CTCCATTTCCAACATCGCCA+AGG 0.632293 2.2:+3152253 None:intergenic
TTCCCCATGATGTCCAAGAA+CGG 0.640738 2.2:+3152387 None:intergenic
AGATCCAAAAGTACTAGTGG+AGG 0.648546 2.2:-3152043 MS.gene051949:intron
GAAATGTGGCGAGAGAAGCG+CGG 0.665825 2.2:+3154446 None:intergenic
ATCACACGGCTATAGTGATG+AGG 0.672104 2.2:-3151601 MS.gene051949:CDS
TCTCAACAACCTCAAGGACA+AGG 0.673798 2.2:-3154410 MS.gene051949:intron
GCTTGCTGATCCTCAAAGTG+CGG 0.674741 2.2:-3153694 MS.gene051949:intron
TATAAAGTTGCAAAATCACA+CGG 0.677424 2.2:-3151615 MS.gene051949:CDS
CAGCACTCAGAAAACCAGTG+AGG 0.776863 2.2:-3151540 None:intergenic
AATGTGGCGAGAGAAGCGCG+GGG 0.820045 2.2:+3154448 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATATATATAGATATTA+AGG + chr2.2:3153147-3153166 None:intergenic 10.0%
!! TACTAATAACTAATTAAATT+TGG - chr2.2:3153486-3153505 MS.gene051949:intron 10.0%
!!! GATCATATATTCTTTTTTAA+TGG + chr2.2:3153721-3153740 None:intergenic 15.0%
!! AATAACCATTCTAATATATG+AGG - chr2.2:3154137-3154156 MS.gene051949:intron 20.0%
!! ATAACTAATTAAATTTGGTC+TGG - chr2.2:3153491-3153510 MS.gene051949:intron 20.0%
!! ATGAAATGAATTGAATTTGA+AGG + chr2.2:3151709-3151728 None:intergenic 20.0%
!! GAAACAATCAAATAGATATA+TGG + chr2.2:3152781-3152800 None:intergenic 20.0%
!! TAACTAATTAAATTTGGTCT+GGG - chr2.2:3153492-3153511 MS.gene051949:intron 20.0%
!! TATGAATTAATTGTTTGCTT+TGG + chr2.2:3153750-3153769 None:intergenic 20.0%
!! TGAAATGAATTGAATTTGAA+GGG + chr2.2:3151708-3151727 None:intergenic 20.0%
!! TGGATAAACAACTTAATTAT+GGG + chr2.2:3153117-3153136 None:intergenic 20.0%
!! TTGGATAAACAACTTAATTA+TGG + chr2.2:3153118-3153137 None:intergenic 20.0%
!!! CATATATTCTTTTTTAATGG+AGG + chr2.2:3153718-3153737 None:intergenic 20.0%
!!! TATATATATTTTCAGATACG+TGG - chr2.2:3153154-3153173 MS.gene051949:intron 20.0%
!!! TATTTGTTTTATTCCATATC+AGG - chr2.2:3152446-3152465 MS.gene051949:intron 20.0%
!!! TGATCATTTGTTTTAGAAAT+AGG - chr2.2:3153050-3153069 MS.gene051949:intron 20.0%
!!! TTTTCAATAGTAAGATGATA+AGG + chr2.2:3152665-3152684 None:intergenic 20.0%
!!! TTTTTTTCAAGTGTAAGTAA+TGG + chr2.2:3152192-3152211 None:intergenic 20.0%
! AAAATAAAACCTATAGTGCA+TGG - chr2.2:3154066-3154085 MS.gene051949:intron 25.0%
! ATGCAAGTTACTCTTTAATT+TGG - chr2.2:3153294-3153313 MS.gene051949:intron 25.0%
! GACACTTCTAAATTGATTAA+TGG - chr2.2:3153197-3153216 MS.gene051949:intron 25.0%
! TATAAAGTTGCAAAATCACA+CGG - chr2.2:3154448-3154467 MS.gene051949:CDS 25.0%
! TATTTCTTGCATGATTTAGT+TGG - chr2.2:3153325-3153344 MS.gene051949:intron 25.0%
!! AAACAGGAGACAAATTTTAA+AGG + chr2.2:3153875-3153894 None:intergenic 25.0%
!! AATGACATTTTCTGTTTTCA+GGG - chr2.2:3151756-3151775 MS.gene051949:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr2.2:3153120-3153139 MS.gene051949:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG - chr2.2:3153121-3153140 MS.gene051949:intron 25.0%
!!! AGTTTTTTCATAAGCTATTC+TGG + chr2.2:3152998-3153017 None:intergenic 25.0%
AATTAAATTTGGTCTGGGAA+AGG - chr2.2:3153497-3153516 MS.gene051949:intron 30.0%
AATTTGACTGTATCATGGAT+GGG + chr2.2:3154235-3154254 None:intergenic 30.0%
ACGACCAAAACATACATATT+GGG + chr2.2:3151968-3151987 None:intergenic 30.0%
AGATGGAAGAATTGTTGTAT+TGG + chr2.2:3152625-3152644 None:intergenic 30.0%
ATCTTAGTTTCTGTAGCTAT+TGG + chr2.2:3153600-3153619 None:intergenic 30.0%
ATGTTCATGGAGAATAGATA+GGG + chr2.2:3153276-3153295 None:intergenic 30.0%
CAATTGATATTTCTTACAGC+AGG - chr2.2:3153445-3153464 MS.gene051949:intron 30.0%
CCTAATGTCTATCAAATTGT+AGG + chr2.2:3152571-3152590 None:intergenic 30.0%
CCTACAATTTGATAGACATT+AGG - chr2.2:3152568-3152587 MS.gene051949:intron 30.0%
CGACAGAAATCTTTATGAAA+CGG - chr2.2:3153648-3153667 MS.gene051949:intron 30.0%
GCAAAATTTCCATTTCGTAA+GGG + chr2.2:3154163-3154182 None:intergenic 30.0%
GGAACATATTGAAGATACTT+TGG + chr2.2:3152550-3152569 None:intergenic 30.0%
TAATTTGACTGTATCATGGA+TGG + chr2.2:3154236-3154255 None:intergenic 30.0%
TACGACCAAAACATACATAT+TGG + chr2.2:3151969-3151988 None:intergenic 30.0%
TCAAATAGAAGCAAAGAAAC+AGG + chr2.2:3153891-3153910 None:intergenic 30.0%
TCAACATAATCATCAACACA+AGG + chr2.2:3153914-3153933 None:intergenic 30.0%
TGCAAAATTTCCATTTCGTA+AGG + chr2.2:3154164-3154183 None:intergenic 30.0%
TGGAAAGATGAATTCATACT+TGG + chr2.2:3152172-3152191 None:intergenic 30.0%
TGGATAATTTGACTGTATCA+TGG + chr2.2:3154240-3154259 None:intergenic 30.0%
TTTGAACGTAATGACATGAT+AGG - chr2.2:3152803-3152822 MS.gene051949:intron 30.0%
! ATGCAGTCTAAATTTTACCT+TGG - chr2.2:3153793-3153812 MS.gene051949:intron 30.0%
! ATTTTGCAGGTAATTTCACA+AGG - chr2.2:3154176-3154195 MS.gene051949:intron 30.0%
! CTTGTTGTCAATATGATCAT+GGG - chr2.2:3153844-3153863 MS.gene051949:intron 30.0%
! GAATGACATTTTCTGTTTTC+AGG - chr2.2:3151755-3151774 MS.gene051949:intron 30.0%
! GATATAGTCTTTGTTTGTCA+AGG + chr2.2:3152011-3152030 None:intergenic 30.0%
! GTTACCCAATATGTATGTTT+TGG - chr2.2:3151961-3151980 MS.gene051949:intron 30.0%
! TTACGAAATGGAAATTTTGC+AGG - chr2.2:3154163-3154182 MS.gene051949:intron 30.0%
!! GTGTTTGGTATATGTTTTGA+TGG - chr2.2:3152842-3152861 MS.gene051949:CDS 30.0%
!! TAATTGTTTGCTTTGGAAGA+AGG + chr2.2:3153743-3153762 None:intergenic 30.0%
!! TCCATTGGTTTATAGTATGA+TGG - chr2.2:3153954-3153973 MS.gene051949:CDS 30.0%
!! TTGTTTTATTCCATATCAGG+TGG - chr2.2:3152449-3152468 MS.gene051949:intron 30.0%
!!! ATTCTTTTTTAATGGAGGAC+AGG + chr2.2:3153713-3153732 None:intergenic 30.0%
!!! CACAATTTATTTTAGCTCAC+AGG - chr2.2:3152968-3152987 MS.gene051949:intron 30.0%
AAGCAAATCCAAATAAACCC+AGG + chr2.2:3152869-3152888 None:intergenic 35.0%
AAGCAGAAACATTGGAAATG+TGG + chr2.2:3151634-3151653 None:intergenic 35.0%
AAGGGCCTCATATATTAGAA+TGG + chr2.2:3154145-3154164 None:intergenic 35.0%
AATGGACACATAAAATCCAC+TGG - chr2.2:3153215-3153234 MS.gene051949:intron 35.0%
ACAATAATACCTTGTCCTTG+AGG + chr2.2:3151665-3151684 None:intergenic 35.0%
AGATACTGTGTTCAAGTGTT+TGG - chr2.2:3152827-3152846 MS.gene051949:intron 35.0%
ATAAACACACCATGCACTAT+AGG + chr2.2:3154078-3154097 None:intergenic 35.0%
ATAGATATTAAGGCCCTGTT+TGG + chr2.2:3153137-3153156 None:intergenic 35.0%
CAGAAGTAAACCTTCAGAAA+AGG + chr2.2:3153983-3154002 None:intergenic 35.0%
CATATTGAGAGAGCTAAAGA+TGG + chr2.2:3152642-3152661 None:intergenic 35.0%
CATGTTCATGGAGAATAGAT+AGG + chr2.2:3153277-3153296 None:intergenic 35.0%
CTCTAAATCTCATCAAAGCT+GGG - chr2.2:3151837-3151856 MS.gene051949:CDS 35.0%
GCCATCATACTATAAACCAA+TGG + chr2.2:3153958-3153977 None:intergenic 35.0%
GCTTATTTGAACTTATCTGC+TGG - chr2.2:3152885-3152904 MS.gene051949:CDS 35.0%
GTCTTTACTCTTGACAACTA+TGG + chr2.2:3152722-3152741 None:intergenic 35.0%
TACAAGCAGAGAATTCAACT+AGG - chr2.2:3153543-3153562 MS.gene051949:intron 35.0%
TACTTCTGAGTGAGAAAGTT+GGG - chr2.2:3153995-3154014 MS.gene051949:intron 35.0%
TCTTGCATGATTTAGTTGGA+TGG - chr2.2:3153329-3153348 MS.gene051949:intron 35.0%
TGTGAGAGCAAAACTAATAC+TGG + chr2.2:3154335-3154354 None:intergenic 35.0%
TTACTTCTGAGTGAGAAAGT+TGG - chr2.2:3153994-3154013 MS.gene051949:intron 35.0%
TTGTTGAGAAGCAGAAACAT+TGG + chr2.2:3151642-3151661 None:intergenic 35.0%
! AAATTTTACCTTGGCGATGT+TGG - chr2.2:3153802-3153821 MS.gene051949:intron 35.0%
! AAGAGTAACTTGCATGTTCA+TGG + chr2.2:3153289-3153308 None:intergenic 35.0%
! AATACCTCCACTAGTACTTT+TGG + chr2.2:3154027-3154046 None:intergenic 35.0%
! CTATGAAAACAGCTAGCTTA+TGG - chr2.2:3152939-3152958 MS.gene051949:intron 35.0%
! TAAATATAGCACCCTTTTCC+TGG + chr2.2:3152516-3152535 None:intergenic 35.0%
! TGATGAGATTTAGAGCCATT+GGG + chr2.2:3151832-3151851 None:intergenic 35.0%
! TTGATCTGACAGTTTGGAAT+AGG - chr2.2:3152109-3152128 MS.gene051949:intron 35.0%
! TTGATGAGATTTAGAGCCAT+TGG + chr2.2:3151833-3151852 None:intergenic 35.0%
! TTTCTCTCTCTCTTTTCCAT+TGG - chr2.2:3153939-3153958 MS.gene051949:CDS 35.0%
!! ATCCACTGGAGCATTATTTT+TGG - chr2.2:3153229-3153248 MS.gene051949:intron 35.0%
!! CATAAGCTAGCTGTTTTCAT+AGG + chr2.2:3152941-3152960 None:intergenic 35.0%
!! GCTTGTTGTCAATATGATCA+TGG - chr2.2:3153843-3153862 MS.gene051949:intron 35.0%
!!! GTATATGTTTTGATGGTCCT+GGG - chr2.2:3152849-3152868 MS.gene051949:CDS 35.0%
!!! GTTTTCTGAGTGCTGAAATT+TGG + chr2.2:3154518-3154537 None:intergenic 35.0%
!!! TATTAGTTTTGCTCTCACAC+AGG - chr2.2:3154336-3154355 MS.gene051949:intron 35.0%
AATATACACACCGCACTTTG+AGG + chr2.2:3152382-3152401 None:intergenic 40.0%
AGCCATTTCTGTGTAACTAC+AGG - chr2.2:3153384-3153403 MS.gene051949:intron 40.0%
AGCCTGTAGTTACACAGAAA+TGG + chr2.2:3153389-3153408 None:intergenic 40.0%
AGTGCATGGTGTGTTTATGT+CGG - chr2.2:3154080-3154099 MS.gene051949:intron 40.0%
ATCAATTGTCCATCTTCTGC+TGG + chr2.2:3153433-3153452 None:intergenic 40.0%
CATGGAGTTGCTAATGGAAT+CGG - chr2.2:3152489-3152508 MS.gene051949:intron 40.0%
CTCCAAAAATAATGCTCCAG+TGG + chr2.2:3153234-3153253 None:intergenic 40.0%
GGATGTTTCAACTGTTGATG+TGG - chr2.2:3153175-3153194 MS.gene051949:intron 40.0%
GTCTTCTATCTAGTAACACG+TGG - chr2.2:3152044-3152063 MS.gene051949:CDS 40.0%
GTTGAAGTGATGAAGGGAAA+AGG + chr2.2:3151594-3151613 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG - chr2.2:3152910-3152929 MS.gene051949:intron 40.0%
TATATGAGGCCCTTACGAAA+TGG - chr2.2:3154151-3154170 MS.gene051949:intron 40.0%
TGTCAGATCAACTCTACAAC+AGG + chr2.2:3152100-3152119 None:intergenic 40.0%
TGTGATCCTCTAATCAGCTT+GGG - chr2.2:3152144-3152163 MS.gene051949:intron 40.0%
TTACACAGAAATGGCTTCAC+AGG + chr2.2:3153380-3153399 None:intergenic 40.0%
TTCTATCTAGTAACACGTGG+CGG - chr2.2:3152047-3152066 MS.gene051949:CDS 40.0%
TTGCTCTCACACAGGATTAA+TGG - chr2.2:3154344-3154363 MS.gene051949:intron 40.0%
TTGTCAATATGATCATGGGC+AGG - chr2.2:3153848-3153867 MS.gene051949:intron 40.0%
! ATGATGGCATCCTTTTCTGA+AGG - chr2.2:3153970-3153989 MS.gene051949:intron 40.0%
! GATGAGATTTAGAGCCATTG+GGG + chr2.2:3151831-3151850 None:intergenic 40.0%
! GCTCTAAATCTCATCAAAGC+TGG - chr2.2:3151836-3151855 MS.gene051949:CDS 40.0%
! GTAGAGTTGATCTGACAGTT+TGG - chr2.2:3152103-3152122 MS.gene051949:intron 40.0%
! TGCCTTCTGCTGATGTTTTA+GGG + chr2.2:3154273-3154292 None:intergenic 40.0%
! TTGATGGTCCTGGGTTTATT+TGG - chr2.2:3152858-3152877 MS.gene051949:CDS 40.0%
! TTGCCTTCTGCTGATGTTTT+AGG + chr2.2:3154274-3154293 None:intergenic 40.0%
!! AGATCCAAAAGTACTAGTGG+AGG - chr2.2:3154020-3154039 MS.gene051949:intron 40.0%
!! GCTAGATCCAAAAGTACTAG+TGG - chr2.2:3154017-3154036 MS.gene051949:intron 40.0%
!!! CACTGGAGCATTATTTTTGG+AGG - chr2.2:3153232-3153251 MS.gene051949:intron 40.0%
!!! GGTATATGTTTTGATGGTCC+TGG - chr2.2:3152848-3152867 MS.gene051949:CDS 40.0%
!!! TGTTTTAGGGGAAATGCAGT+TGG + chr2.2:3154260-3154279 None:intergenic 40.0%
AATGGAATCGGTCCAGGAAA+AGG - chr2.2:3152501-3152520 MS.gene051949:intron 45.0%
ACAAGATGCCGCTACTTCAT+CGG + chr2.2:3152332-3152351 None:intergenic 45.0%
ATCACACGGCTATAGTGATG+AGG - chr2.2:3154462-3154481 MS.gene051949:CDS 45.0%
ATGGAATCGGTCCAGGAAAA+GGG - chr2.2:3152502-3152521 MS.gene051949:intron 45.0%
ATTTGGTCTGGGAAAGGAGT+TGG - chr2.2:3153503-3153522 MS.gene051949:intron 45.0%
CAAGCAACATCCACCTGATA+TGG + chr2.2:3152462-3152481 None:intergenic 45.0%
CACACAGGATTAATGGTGAC+AGG - chr2.2:3154351-3154370 MS.gene051949:intron 45.0%
GCTCCAATGTACTCGATGAA+AGG - chr2.2:3154209-3154228 MS.gene051949:intron 45.0%
GTGTGATCCTCTAATCAGCT+TGG - chr2.2:3152143-3152162 MS.gene051949:intron 45.0%
TAACTACAGGCTCCAGTTTC+AGG - chr2.2:3153397-3153416 MS.gene051949:intron 45.0%
TACCTTGGCGATGTTGGAAA+TGG - chr2.2:3153808-3153827 MS.gene051949:intron 45.0%
TAGAGGATCACACTTGCTCT+TGG + chr2.2:3152136-3152155 None:intergenic 45.0%
TCCAAAAAGCCAGCAGAAGA+TGG - chr2.2:3153421-3153440 MS.gene051949:intron 45.0%
TCCCCTAAAACATCAGCAGA+AGG - chr2.2:3154268-3154287 MS.gene051949:CDS 45.0%
TCTCAACAACCTCAAGGACA+AGG - chr2.2:3151653-3151672 MS.gene051949:CDS 45.0%
TCTGCTTCTCAACAACCTCA+AGG - chr2.2:3151647-3151666 MS.gene051949:CDS 45.0%
TGGTGTGTTTATGTCGGAGT+CGG - chr2.2:3154086-3154105 MS.gene051949:intron 45.0%
TTCCCCATGATGTCCAAGAA+CGG + chr2.2:3153679-3153698 None:intergenic 45.0%
! ACTTTGAGGATCAGCAAGCA+TGG + chr2.2:3152368-3152387 None:intergenic 45.0%
! CGAGTACATTGGAGCACTAA+TGG + chr2.2:3154204-3154223 None:intergenic 45.0%
! GATGTTGCTTGTGGAAAGCA+TGG - chr2.2:3152471-3152490 MS.gene051949:intron 45.0%
! GGAAAGCATGGAGTTGCTAA+TGG - chr2.2:3152483-3152502 MS.gene051949:intron 45.0%
! TATCAGGTGGATGTTGCTTG+TGG - chr2.2:3152462-3152481 MS.gene051949:intron 45.0%
!! GCCTTCTGCTGATGTTTTAG+GGG + chr2.2:3154272-3154291 None:intergenic 45.0%
!! TTTTTGGGCCTCGGAATCAT+GGG - chr2.2:3151803-3151822 MS.gene051949:CDS 45.0%
!!! GGCTTTTTGGAACCTGAAAC+TGG + chr2.2:3153412-3153431 None:intergenic 45.0%
!!! TCCATCTTCTGCTGGCTTTT+TGG + chr2.2:3153425-3153444 None:intergenic 45.0%
!!! ATTTTATTATATAATATTTC+AGG - chr2.2:3153625-3153644 MS.gene051949:intron 5.0%
AAACAGACTCTGCTAACCCC+AGG + chr2.2:3154390-3154409 None:intergenic 50.0%
AACAGACTCTGCTAACCCCA+GGG + chr2.2:3154389-3154408 None:intergenic 50.0%
ACCTTCTCCCGATGAAGTAG+CGG - chr2.2:3152321-3152340 MS.gene051949:intron 50.0%
CAAGATGCCGCTACTTCATC+GGG + chr2.2:3152331-3152350 None:intergenic 50.0%
CCAACCTATTCCGATTGCAG+CGG - chr2.2:3154411-3154430 MS.gene051949:CDS 50.0%
CGCTGCAATCGGAATAGGTT+GGG + chr2.2:3154413-3154432 None:intergenic 50.0%
CGGGGAGTTGAAGTGATGAA+GGG + chr2.2:3151600-3151619 None:intergenic 50.0%
CTCCATTTCCAACATCGCCA+AGG + chr2.2:3153813-3153832 None:intergenic 50.0%
CTCCGTTCTTGGACATCATG+GGG - chr2.2:3153674-3153693 MS.gene051949:intron 50.0%
GCTCCGTTCTTGGACATCAT+GGG - chr2.2:3153673-3153692 MS.gene051949:intron 50.0%
GGGCCTTTCATCGAGTACAT+TGG + chr2.2:3154215-3154234 None:intergenic 50.0%
GTGTTTATGTCGGAGTCGGT+TGG - chr2.2:3154090-3154109 MS.gene051949:intron 50.0%
GTTGCTAATGGAATCGGTCC+AGG - chr2.2:3152495-3152514 MS.gene051949:intron 50.0%
TGAAACGGTTGCTCCGTTCT+TGG - chr2.2:3153663-3153682 MS.gene051949:intron 50.0%
TGCTCCGTTCTTGGACATCA+TGG - chr2.2:3153672-3153691 MS.gene051949:intron 50.0%
TTGGCTCCCAAGCTGATTAG+AGG + chr2.2:3152153-3152172 None:intergenic 50.0%
! ACAGGATCTAAGACTTGCCC+TGG - chr2.2:3154369-3154388 MS.gene051949:intron 50.0%
! AGGATCTAAGACTTGCCCTG+GGG - chr2.2:3154371-3154390 MS.gene051949:intron 50.0%
! CAGGATCTAAGACTTGCCCT+GGG - chr2.2:3154370-3154389 MS.gene051949:intron 50.0%
! GCTTGCTGATCCTCAAAGTG+CGG - chr2.2:3152369-3152388 MS.gene051949:intron 50.0%
!! CTTTTTGGGCCTCGGAATCA+TGG - chr2.2:3151802-3151821 MS.gene051949:CDS 50.0%
!! TCTGGGAAAGGAGTTGGTGA+AGG - chr2.2:3153509-3153528 MS.gene051949:intron 50.0%
!!! TCTCCACGGGTTGGCTTTTT+GGG - chr2.2:3151788-3151807 MS.gene051949:intron 50.0%
AGGGATTCAGTCCTCTCCAC+GGG - chr2.2:3151775-3151794 MS.gene051949:intron 55.0%
ATTCAGTCCTCTCCACGGGT+TGG - chr2.2:3151779-3151798 MS.gene051949:intron 55.0%
CAAAAAGCCAACCCGTGGAG+AGG + chr2.2:3151789-3151808 None:intergenic 55.0%
CAGGGATTCAGTCCTCTCCA+CGG - chr2.2:3151774-3151793 MS.gene051949:intron 55.0%
CCGCTGCAATCGGAATAGGT+TGG + chr2.2:3154414-3154433 None:intergenic 55.0%
GAAATGTGGCGAGAGAAGCG+CGG + chr2.2:3151620-3151639 None:intergenic 55.0%
GCGGGGAGTTGAAGTGATGA+AGG + chr2.2:3151601-3151620 None:intergenic 55.0%
TCGTTAGCAGCCGCTGCAAT+CGG + chr2.2:3154424-3154443 None:intergenic 55.0%
! AAATGTGGCGAGAGAAGCGC+GGG + chr2.2:3151619-3151638 None:intergenic 55.0%
! GGAGTCGGTTGGTGCTTAGT+AGG - chr2.2:3154101-3154120 MS.gene051949:intron 55.0%
!!! CTCTCCACGGGTTGGCTTTT+TGG - chr2.2:3151787-3151806 MS.gene051949:intron 55.0%
AGGCCCAAAAAGCCAACCCG+TGG + chr2.2:3151794-3151813 None:intergenic 60.0%
CGGAATCATGGGCACCCCAA+TGG - chr2.2:3151814-3151833 MS.gene051949:CDS 60.0%
GCAGCCGCTGCAATCGGAAT+AGG + chr2.2:3154418-3154437 None:intergenic 60.0%
GCCGCTACTTCATCGGGAGA+AGG + chr2.2:3152325-3152344 None:intergenic 60.0%
! AATGTGGCGAGAGAAGCGCG+GGG + chr2.2:3151618-3151637 None:intergenic 60.0%
! TTGGGGTGCCCATGATTCCG+AGG + chr2.2:3151814-3151833 None:intergenic 60.0%
!!! CGGGTTGGCTTTTTGGGCCT+CGG - chr2.2:3151794-3151813 MS.gene051949:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 3151542 3154543 3151542 ID=MS.gene051949
chr2.2 mRNA 3151542 3154543 3151542 ID=MS.gene051949.t1;Parent=MS.gene051949
chr2.2 exon 3154411 3154543 3154411 ID=MS.gene051949.t1.exon1;Parent=MS.gene051949.t1
chr2.2 CDS 3154411 3154543 3154411 ID=cds.MS.gene051949.t1;Parent=MS.gene051949.t1
chr2.2 exon 3154227 3154308 3154227 ID=MS.gene051949.t1.exon2;Parent=MS.gene051949.t1
chr2.2 CDS 3154227 3154308 3154227 ID=cds.MS.gene051949.t1;Parent=MS.gene051949.t1
chr2.2 exon 3153913 3153978 3153913 ID=MS.gene051949.t1.exon3;Parent=MS.gene051949.t1
chr2.2 CDS 3153913 3153978 3153913 ID=cds.MS.gene051949.t1;Parent=MS.gene051949.t1
chr2.2 exon 3153695 3153770 3153695 ID=MS.gene051949.t1.exon4;Parent=MS.gene051949.t1
chr2.2 CDS 3153695 3153770 3153695 ID=cds.MS.gene051949.t1;Parent=MS.gene051949.t1
chr2.2 exon 3153562 3153617 3153562 ID=MS.gene051949.t1.exon5;Parent=MS.gene051949.t1
chr2.2 CDS 3153562 3153617 3153562 ID=cds.MS.gene051949.t1;Parent=MS.gene051949.t1
chr2.2 exon 3152832 3152916 3152832 ID=MS.gene051949.t1.exon6;Parent=MS.gene051949.t1
chr2.2 CDS 3152832 3152916 3152832 ID=cds.MS.gene051949.t1;Parent=MS.gene051949.t1
chr2.2 exon 3152619 3152679 3152619 ID=MS.gene051949.t1.exon7;Parent=MS.gene051949.t1
chr2.2 CDS 3152619 3152679 3152619 ID=cds.MS.gene051949.t1;Parent=MS.gene051949.t1
chr2.2 exon 3152386 3152438 3152386 ID=MS.gene051949.t1.exon8;Parent=MS.gene051949.t1
chr2.2 CDS 3152386 3152438 3152386 ID=cds.MS.gene051949.t1;Parent=MS.gene051949.t1
chr2.2 exon 3152216 3152286 3152216 ID=MS.gene051949.t1.exon9;Parent=MS.gene051949.t1
chr2.2 CDS 3152216 3152286 3152216 ID=cds.MS.gene051949.t1;Parent=MS.gene051949.t1
chr2.2 exon 3152044 3152116 3152044 ID=MS.gene051949.t1.exon10;Parent=MS.gene051949.t1
chr2.2 CDS 3152044 3152116 3152044 ID=cds.MS.gene051949.t1;Parent=MS.gene051949.t1
chr2.2 exon 3151792 3151900 3151792 ID=MS.gene051949.t1.exon11;Parent=MS.gene051949.t1
chr2.2 CDS 3151792 3151900 3151792 ID=cds.MS.gene051949.t1;Parent=MS.gene051949.t1
chr2.2 exon 3151542 3151684 3151542 ID=MS.gene051949.t1.exon12;Parent=MS.gene051949.t1
chr2.2 CDS 3151542 3151684 3151542 ID=cds.MS.gene051949.t1;Parent=MS.gene051949.t1
Gene Sequence

>MS.gene051949

ATGAGTAGTATGGTGAACTGCAGTCAGTTTGTGACTACAATGCGCTCTGCCTTTTCCCTTCATCACTTCAACTCCCCGCGCTTCTCTCGCCACATTTCCAATGTTTCTGCTTCTCAACAACCTCAAGGACAAGGTATTATTGTATTACTTTACTTACTATATTCCCTTCAAATTCAATTCATTTCATTTCATGACTCAACTTAGTATAATAATGAATGACATTTTCTGTTTTCAGGGATTCAGTCCTCTCCACGGGTTGGCTTTTTGGGCCTCGGAATCATGGGCACCCCAATGGCTCTAAATCTCATCAAAGCTGGGTATGTATGTTAGAAAAATGAAATTGACTGAAAAAAAGATAAGTTATATGCTCAATTGCTATAAGTTAGTAAAAAGACGTTATAAACTCACGAGAAAAAATTGTTACCCAATATGTATGTTTTGGTCGTATGAGTTTATAAGCTATCTGCCTTGACAAACAAAGACTATATCTACTTTAAGATAAGTCTTCTATCTAGTAACACGTGGCGGAACTTTCTTAAATCATTTTGAAATTTTCCTGTTGTAGAGTTGATCTGACAGTTTGGAATAGGACCAAGAGCAAGTGTGATCCTCTAATCAGCTTGGGAGCCAAGTATGAATTCATCTTTCCATTACTTACACTTGAAAAAAATAAAACTTTACATTTTCAAAGACATGTGACATGAACAGAAGATATGCTATAAATTGAAATTTGTGTGTTTGAATTTTGAAAGCTTGTGCTTTTGTTTCTGCAGATATAAACCTTCTCCCGATGAAGTAGCGGCATCTTGTGATCTCACGTTTGCCATGCTTGCTGATCCTCAAAGTGCGGTGTGTATATTTCTGTATAGTTTTTAAATCTTATGTATAAGTCATGAGCTAGTTATATTTGTTTTATTCCATATCAGGTGGATGTTGCTTGTGGAAAGCATGGAGTTGCTAATGGAATCGGTCCAGGAAAAGGGTGCTATATTTAAATTCAAAGTTCCAAAGTATCTTCAATATGTTCCTACAATTTGATAGACATTAGGATTTCAAATGAATATTGATGCTTGTATATGTCCAATACAACAATTCTTCCATCTTTAGCTCTCTCAATATGCCTTATCATCTTACTATTGAAAATTTTCGCACTAGTTTGATTATTGTCTTTGTCTATCCATAGTTGTCAAGAGTAAAGACATTGCATATATTTCTTCGCATTATAATGTCTGCAAGCCATATATCTATTTGATTGTTTCTTTTTGAACGTAATGACATGATAGGAAGATACTGTGTTCAAGTGTTTGGTATATGTTTTGATGGTCCTGGGTTTATTTGGATTTGCTTATTTGAACTTATCTGCTGGCATAAGCACTTGTGAGACTGTTTGGAAGAGCCTATGAAAACAGCTAGCTTATGGCACGTGCACAATTTATTTTAGCTCACAGGCTCTCCAGAATAGCTTATGAAAAAACTTATATCTTATATGAAAACATTTTTACTTTATTTGATCATTTGTTTTAGAAATAGGTTATGAATGAGCACTTATATGACAAACTTTTGTGCTACAATCCCATAATTAAGTTGTTTATCCAAACAGGGCCTTAATATCTATATATATTTTCAGATACGTGGATGTTTCAACTGTTGATGTGGACACTTCTAAATTGATTAATGGACACATAAAATCCACTGGAGCATTATTTTTGGAGGTGAGCTTGTTTATACTTTCCCTATCTATTCTCCATGAACATGCAAGTTACTCTTTAATTTGGATATGAATTATTTCTTGCATGATTTAGTTGGATGGTTAGATGAATATGTAAGTTGTAACACCTGTGAAGCCATTTCTGTGTAACTACAGGCTCCAGTTTCAGGTTCCAAAAAGCCAGCAGAAGATGGACAATTGATATTTCTTACAGCAGGTGAATATTCTTCTTCAAGTACTAATAACTAATTAAATTTGGTCTGGGAAAGGAGTTGGTGAAGGATTTTTTTTTTTACAAGCAGAGAATTCAACTAGGATGTGTCTTGTACTAAGTTGCAGCATTGATTCCAATAGCTACAGAAACTAAGATAATGTATTTTATTATATAATATTTCAGGCGACAGAAATCTTTATGAAACGGTTGCTCCGTTCTTGGACATCATGGGGAAAGTACATATATCCTGTCCTCCATTAAAAAAGAATATATGATCCTTCTTCCAAAGCAAACAATTAATTCATATAATGTGTATGCTTTATGCTTCAATGCAGTCTAAATTTTACCTTGGCGATGTTGGAAATGGAGCTGCAATGAAGCTTGTTGTCAATATGATCATGGGCAGGTCCTTTAAAATTTGTCTCCTGTTTCTTTGCTTCTATTTGACCTTGTGTTGATGATTATGTTGACATTATTTCTCTCTCTCTTTTCCATTGGTTTATAGTATGATGGCATCCTTTTCTGAAGGTTTACTTCTGAGTGAGAAAGTTGGGCTAGATCCAAAAGTACTAGTGGAGGTATTCAGTTATTCGCTAGTTCACAAAATAAAACCTATAGTGCATGGTGTGTTTATGTCGGAGTCGGTTGGTGCTTAGTAGGACATGAGTACTAAAATAACCATTCTAATATATGAGGCCCTTACGAAATGGAAATTTTGCAGGTAATTTCACAAGGTGCCATTAGTGCTCCAATGTACTCGATGAAAGGCCCATCCATGATACAGTCAAATTATCCAACTGCATTTCCCCTAAAACATCAGCAGAAGGCAAGTAAATGTATATTCTTGTTTGATAGTAACTCTCAAATACCAGTATTAGTTTTGCTCTCACACAGGATTAATGGTGACAGGATCTAAGACTTGCCCTGGGGTTAGCAGAGTCTGTTTCCCAACCTATTCCGATTGCAGCGGCTGCTAACGAATTATATAAAGTTGCAAAATCACACGGCTATAGTGATGAGGACTTTTCAGCTGTCATTGAAGCATTAAAATCCAAATTTCAGCACTCAGAAAACCAGTGA

Protein sequence

>MS.gene051949.t1

MSSMVNCSQFVTTMRSAFSLHHFNSPRFSRHISNVSASQQPQGQGIQSSPRVGFLGLGIMGTPMALNLIKAGVDLTVWNRTKSKCDPLISLGAKYKPSPDEVAASCDLTFAMLADPQSAVDVACGKHGVANGIGPGKGYVDVSTVDVDTSKLINGHIKSTGALFLEAPVSGSKKPAEDGQLIFLTAGDRNLYETVAPFLDIMGKSKFYLGDVGNGAAMKLVVNMIMGSMMASFSEGLLLSEKVGLDPKVLVEVISQGAISAPMYSMKGPSMIQSNYPTAFPLKHQQKAKSVSQPIPIAAAANELYKVAKSHGYSDEDFSAVIEALKSKFQHSENQ