Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73116.t1 | XP_003626313.1 | 95.6 | 274 | 11 | 1 | 1 | 273 | 1 | 274 | 5.10E-144 | 520.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73116.t1 | Q86JM5 | 33.5 | 245 | 157 | 4 | 20 | 261 | 37 | 278 | 3.8e-23 | 110.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73116.t1 | Q2HTN1 | 95.6 | 274 | 11 | 1 | 1 | 273 | 1 | 274 | 3.7e-144 | 520.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049173 | MS.gene73116 | 0.825772 | 3.91E-54 | -1.69E-46 |
| MS.gene049427 | MS.gene73116 | 0.803676 | 3.11E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene73116 | 0.800892 | 1.16E-48 | -1.69E-46 |
| MS.gene05100 | MS.gene73116 | 0.806945 | 6.43E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene73116 | 0.81222 | 4.73E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene73116 | 0.812101 | 5.02E-51 | -1.69E-46 |
| MS.gene059858 | MS.gene73116 | 0.824159 | 9.39E-54 | -1.69E-46 |
| MS.gene059960 | MS.gene73116 | 0.818119 | 2.31E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene73116 | 0.803709 | 3.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73116.t1 | MTR_7g113780 | 95.620 | 274 | 11 | 1 | 1 | 273 | 1 | 274 | 1.74e-166 | 462 |
| MS.gene73116.t1 | MTR_8g078200 | 33.929 | 280 | 168 | 3 | 9 | 273 | 16 | 293 | 2.23e-42 | 147 |
| MS.gene73116.t1 | MTR_3g111610 | 33.216 | 283 | 164 | 5 | 9 | 273 | 15 | 290 | 5.93e-41 | 143 |
| MS.gene73116.t1 | MTR_5g019330 | 33.452 | 281 | 166 | 5 | 7 | 272 | 9 | 283 | 1.42e-37 | 134 |
| MS.gene73116.t1 | MTR_1g021915 | 32.000 | 200 | 119 | 4 | 9 | 193 | 9 | 206 | 9.44e-21 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73116.t1 | AT3G06470 | 57.299 | 274 | 104 | 5 | 9 | 272 | 8 | 278 | 7.97e-100 | 293 |
| MS.gene73116.t1 | AT3G06460 | 52.107 | 261 | 116 | 5 | 9 | 262 | 8 | 266 | 1.20e-85 | 258 |
| MS.gene73116.t1 | AT1G75000 | 30.928 | 291 | 155 | 6 | 10 | 269 | 5 | 280 | 1.81e-36 | 131 |
| MS.gene73116.t1 | AT4G36830 | 28.472 | 288 | 176 | 8 | 9 | 273 | 9 | 289 | 1.61e-30 | 115 |
| MS.gene73116.t1 | AT4G36830 | 29.572 | 257 | 153 | 7 | 9 | 244 | 9 | 258 | 2.98e-25 | 102 |
Find 100 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATGGTCCCTTCTTCTTT+TGG | 0.123328 | 3.4:+50792178 | MS.gene73116:CDS |
| TCCGGTGGTGGTGGATGCTC+TGG | 0.244745 | 3.4:+50792531 | MS.gene73116:CDS |
| CTCCATCCTCTCCCTCATTA+TGG | 0.310997 | 3.4:+50792077 | MS.gene73116:CDS |
| GAGAGTGAGGGAGAGATAAA+AGG | 0.313559 | 3.4:-50791980 | None:intergenic |
| CTCTCCCTCATTATGGCTAT+TGG | 0.337974 | 3.4:+50792084 | MS.gene73116:CDS |
| GGATAGGTGGGAGAGGGAAG+AGG | 0.353829 | 3.4:-50792008 | None:intergenic |
| TCCCAATCATGTGTTATCTA+TGG | 0.356723 | 3.4:+50792313 | MS.gene73116:CDS |
| GGAGGTTAGGCGTGTGGGTT+AGG | 0.364467 | 3.4:-50792122 | None:intergenic |
| GGATGGAGAGGATGAGGTTG+TGG | 0.388690 | 3.4:-50792062 | None:intergenic |
| GTGGGAGAGGGAAGAGGAGA+AGG | 0.389465 | 3.4:-50792002 | None:intergenic |
| CAAAAGAAGAAGGGACCATT+TGG | 0.392612 | 3.4:-50792177 | None:intergenic |
| GAGTTGGTAAGAAGTGCAAT+AGG | 0.397860 | 3.4:-50792360 | None:intergenic |
| CTTTATTATCACTTCGGATC+CGG | 0.398177 | 3.4:+50792513 | MS.gene73116:CDS |
| TGGTGGATGCTCTGGGATGA+AGG | 0.407237 | 3.4:+50792539 | MS.gene73116:CDS |
| GAGGAATGAGAGACGTTTGA+TGG | 0.423143 | 3.4:-50792268 | None:intergenic |
| GTTAGGCGTGTGGGTTAGGA+TGG | 0.424043 | 3.4:-50792118 | None:intergenic |
| GAGGTTGTGGAGTGCGGTGA+AGG | 0.426675 | 3.4:-50792049 | None:intergenic |
| GGAAGTGAGGTGGGATAGGT+GGG | 0.431318 | 3.4:-50792020 | None:intergenic |
| GATGCTCTGGGATGAAGGCT+TGG | 0.437263 | 3.4:+50792544 | MS.gene73116:CDS |
| AGCCATAGATAACACATGAT+TGG | 0.439169 | 3.4:-50792315 | None:intergenic |
| AGGAAGTGAGGTGGGATAGG+TGG | 0.440874 | 3.4:-50792021 | None:intergenic |
| GGAAGAGGAGAAGGAGAGTG+AGG | 0.444740 | 3.4:-50791993 | None:intergenic |
| CACTTCGGATCCGGTGGTGG+TGG | 0.447681 | 3.4:+50792522 | MS.gene73116:CDS |
| TTGGCAGAATCCTTCAACAT+TGG | 0.449261 | 3.4:+50791869 | MS.gene73116:CDS |
| TTGAGGAAGTGAGGTGGGAT+AGG | 0.449819 | 3.4:-50792024 | None:intergenic |
| GGGAGAGGATGGAGAGGATG+AGG | 0.450488 | 3.4:-50792068 | None:intergenic |
| GGACCATTTGGAGGGGTATG+AGG | 0.451616 | 3.4:-50792165 | None:intergenic |
| GCCATAGATAACACATGATT+GGG | 0.452793 | 3.4:-50792314 | None:intergenic |
| TGGAAAGAGAGAGGAACAAA+AGG | 0.460332 | 3.4:-50791954 | None:intergenic |
| CAGATGGTGGAGCGGAGGTT+AGG | 0.467929 | 3.4:-50792135 | None:intergenic |
| CCGGTGGTGGTGGATGCTCT+GGG | 0.474001 | 3.4:+50792532 | MS.gene73116:CDS |
| CCATTTGGAGGGGTATGAGG+AGG | 0.474427 | 3.4:-50792162 | None:intergenic |
| TGAACACGAACTGAACAATC+TGG | 0.475700 | 3.4:-50792467 | None:intergenic |
| TACTACTTCCTCACCACTGT+TGG | 0.476064 | 3.4:+50792408 | MS.gene73116:CDS |
| CTCATGCTTTATTATCACTT+CGG | 0.480515 | 3.4:+50792507 | MS.gene73116:CDS |
| AGTTGGTAAGAAGTGCAATA+GGG | 0.487218 | 3.4:-50792359 | None:intergenic |
| TATCACTTCGGATCCGGTGG+TGG | 0.497768 | 3.4:+50792519 | MS.gene73116:CDS |
| AGGAACAAAAGGGATGAGGC+TGG | 0.499237 | 3.4:-50791943 | None:intergenic |
| GGAGCGGAGGTTAGGCGTGT+GGG | 0.499948 | 3.4:-50792127 | None:intergenic |
| GAGGTGGGATAGGTGGGAGA+GGG | 0.500599 | 3.4:-50792014 | None:intergenic |
| GTGATAATAAAGCATGAGAC+AGG | 0.502322 | 3.4:-50792502 | None:intergenic |
| GATGAGGCTGGAGTGTGAGG+AGG | 0.502414 | 3.4:-50791931 | None:intergenic |
| TGAGGTGGGATAGGTGGGAG+AGG | 0.507625 | 3.4:-50792015 | None:intergenic |
| GAGGGAGAGATAAAAGGCTA+TGG | 0.508066 | 3.4:-50791974 | None:intergenic |
| GAAGAGGAGAAGGAGAGTGA+GGG | 0.511361 | 3.4:-50791992 | None:intergenic |
| AGCTGAATGGAAAACCTCAT+TGG | 0.512015 | 3.4:+50791850 | None:intergenic |
| CCTCCTCATACCCCTCCAAA+TGG | 0.515262 | 3.4:+50792162 | MS.gene73116:CDS |
| TGGAGCGGAGGTTAGGCGTG+TGG | 0.516377 | 3.4:-50792128 | None:intergenic |
| GATGTAGGCCCAAAAGAAGA+AGG | 0.519086 | 3.4:-50792187 | None:intergenic |
| GAGGGAAGCAGATGGTGGAG+CGG | 0.519215 | 3.4:-50792143 | None:intergenic |
| CCCAGAGCATCCACCACCAC+CGG | 0.521985 | 3.4:-50792532 | None:intergenic |
| AGCCATAATGAGGGAGAGGA+TGG | 0.527649 | 3.4:-50792079 | None:intergenic |
| GCGTGTGGGTTAGGATGGTG+AGG | 0.537723 | 3.4:-50792113 | None:intergenic |
| GGTAAACTAGCCAATGTTGA+AGG | 0.541678 | 3.4:-50791879 | None:intergenic |
| TCGGTAACGACGCGTTTCCA+AGG | 0.542983 | 3.4:-50792441 | None:intergenic |
| AGGGTTTGAGGAAGTGAGGT+GGG | 0.545949 | 3.4:-50792029 | None:intergenic |
| ATGAGGCTGGAGTGTGAGGA+GGG | 0.554548 | 3.4:-50791930 | None:intergenic |
| GGAGTGCGGTGAAGGGTTTG+AGG | 0.557377 | 3.4:-50792041 | None:intergenic |
| TTTCGAGAGGTAGAAGATGT+AGG | 0.563009 | 3.4:-50792202 | None:intergenic |
| GGAAAGAGAGAGGAACAAAA+GGG | 0.565658 | 3.4:-50791953 | None:intergenic |
| GTTGAAGGATTCTGCCAATG+AGG | 0.566132 | 3.4:-50791864 | None:intergenic |
| CAATAGCCATAATGAGGGAG+AGG | 0.566959 | 3.4:-50792083 | None:intergenic |
| AGGGATGAGGCTGGAGTGTG+AGG | 0.567634 | 3.4:-50791934 | None:intergenic |
| AGGTGCCAATAGCCATAATG+AGG | 0.568133 | 3.4:-50792089 | None:intergenic |
| GACGTTTGATGGATCTTGAG+AGG | 0.571177 | 3.4:-50792257 | None:intergenic |
| TGATTGGGACGGTGGAATGA+TGG | 0.571858 | 3.4:-50792299 | None:intergenic |
| GTGAAGGGTTTGAGGAAGTG+AGG | 0.573391 | 3.4:-50792033 | None:intergenic |
| AGGTTGTGGAGTGCGGTGAA+GGG | 0.575003 | 3.4:-50792048 | None:intergenic |
| GTGGGTTAGGATGGTGAGGG+AGG | 0.577836 | 3.4:-50792109 | None:intergenic |
| AAGAAGAAGGGACCATTTGG+AGG | 0.579622 | 3.4:-50792174 | None:intergenic |
| AAGGGTTTGAGGAAGTGAGG+TGG | 0.580580 | 3.4:-50792030 | None:intergenic |
| TATTATCACTTCGGATCCGG+TGG | 0.582897 | 3.4:+50792516 | MS.gene73116:CDS |
| GGTATGAGGAGGGAAGCAGA+TGG | 0.584509 | 3.4:-50792151 | None:intergenic |
| GGAAGCAGATGGTGGAGCGG+AGG | 0.590296 | 3.4:-50792140 | None:intergenic |
| GAGGATGAGGTTGTGGAGTG+CGG | 0.590535 | 3.4:-50792055 | None:intergenic |
| AGAGAGGAACAAAAGGGATG+AGG | 0.592520 | 3.4:-50791947 | None:intergenic |
| ATGAGGAGGGAAGCAGATGG+TGG | 0.597449 | 3.4:-50792148 | None:intergenic |
| CATTTGGAGGGGTATGAGGA+GGG | 0.598396 | 3.4:-50792161 | None:intergenic |
| AGAAGAAGGGACCATTTGGA+GGG | 0.610561 | 3.4:-50792173 | None:intergenic |
| CTGTTGGAATCCGACCGCCT+TGG | 0.618633 | 3.4:+50792424 | MS.gene73116:CDS |
| ATAACACATGATTGGGACGG+TGG | 0.620196 | 3.4:-50792307 | None:intergenic |
| AAAAGGCTATGGAAAGAGAG+AGG | 0.627374 | 3.4:-50791963 | None:intergenic |
| GTCGGATTCCAACAGTGGTG+AGG | 0.628146 | 3.4:-50792416 | None:intergenic |
| CGTGTGGGTTAGGATGGTGA+GGG | 0.629717 | 3.4:-50792112 | None:intergenic |
| TGAATTCAAGATATTTCGAG+AGG | 0.629871 | 3.4:-50792215 | None:intergenic |
| CGGTGGAATGATGGTACACG+TGG | 0.631074 | 3.4:-50792290 | None:intergenic |
| ATGTAGGCCCAAAAGAAGAA+GGG | 0.632371 | 3.4:-50792186 | None:intergenic |
| TAATGAGGGAGAGGATGGAG+AGG | 0.644404 | 3.4:-50792074 | None:intergenic |
| CGACGCGTTTCCAAGGCGGT+CGG | 0.644704 | 3.4:-50792434 | None:intergenic |
| GATGACGTGGACGGATGAGT+TGG | 0.645959 | 3.4:-50792376 | None:intergenic |
| AGAGTACATGATGACGTGGA+CGG | 0.658163 | 3.4:-50792385 | None:intergenic |
| AGGCGGTCGGATTCCAACAG+TGG | 0.659434 | 3.4:-50792421 | None:intergenic |
| GAACTGAACAATCTGGCAGT+CGG | 0.662736 | 3.4:-50792460 | None:intergenic |
| ATAAAGCATGAGACAGGAGA+CGG | 0.662875 | 3.4:-50792496 | None:intergenic |
| TGGAATGATGGTACACGTGG+AGG | 0.666407 | 3.4:-50792287 | None:intergenic |
| TAGATAACACATGATTGGGA+CGG | 0.671340 | 3.4:-50792310 | None:intergenic |
| GAAGAAGGGACCATTTGGAG+GGG | 0.676652 | 3.4:-50792172 | None:intergenic |
| GGTGCCAATAGCCATAATGA+GGG | 0.679843 | 3.4:-50792088 | None:intergenic |
| AGTAAGAGTACATGATGACG+TGG | 0.708386 | 3.4:-50792389 | None:intergenic |
| GTAACGACGCGTTTCCAAGG+CGG | 0.742721 | 3.4:-50792438 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAATTCTAAATTTCACA+TGG | + | chr3.4:50791905-50791924 | MS.gene73116:CDS | 20.0% |
| !!! | CATGTGAAATTTAGAATTTT+TGG | - | chr3.4:50791907-50791926 | None:intergenic | 20.0% |
| !!! | TGAAATTTAGAATTTTTGGA+TGG | - | chr3.4:50791903-50791922 | None:intergenic | 20.0% |
| !!! | TGTTTTTAATGCTTCTCTTT+TGG | + | chr3.4:50792578-50792597 | MS.gene73116:CDS | 25.0% |
| TGAATTCAAGATATTTCGAG+AGG | - | chr3.4:50792218-50792237 | None:intergenic | 30.0% | |
| ! | CTCATGCTTTATTATCACTT+CGG | + | chr3.4:50792507-50792526 | MS.gene73116:CDS | 30.0% |
| AGCCATAGATAACACATGAT+TGG | - | chr3.4:50792318-50792337 | None:intergenic | 35.0% | |
| CTTTATTATCACTTCGGATC+CGG | + | chr3.4:50792513-50792532 | MS.gene73116:CDS | 35.0% | |
| GCCATAGATAACACATGATT+GGG | - | chr3.4:50792317-50792336 | None:intergenic | 35.0% | |
| GTGATAATAAAGCATGAGAC+AGG | - | chr3.4:50792505-50792524 | None:intergenic | 35.0% | |
| TAGATAACACATGATTGGGA+CGG | - | chr3.4:50792313-50792332 | None:intergenic | 35.0% | |
| TCCCAATCATGTGTTATCTA+TGG | + | chr3.4:50792313-50792332 | MS.gene73116:CDS | 35.0% | |
| ! | AAATGGTCCCTTCTTCTTTT+GGG | + | chr3.4:50792179-50792198 | MS.gene73116:CDS | 35.0% |
| !! | AGTTGGTAAGAAGTGCAATA+GGG | - | chr3.4:50792362-50792381 | None:intergenic | 35.0% |
| AAAAGGCTATGGAAAGAGAG+AGG | - | chr3.4:50791966-50791985 | None:intergenic | 40.0% | |
| ATAAAGCATGAGACAGGAGA+CGG | - | chr3.4:50792499-50792518 | None:intergenic | 40.0% | |
| ATGTAGGCCCAAAAGAAGAA+GGG | - | chr3.4:50792189-50792208 | None:intergenic | 40.0% | |
| CAAAAGAAGAAGGGACCATT+TGG | - | chr3.4:50792180-50792199 | None:intergenic | 40.0% | |
| GGAAAGAGAGAGGAACAAAA+GGG | - | chr3.4:50791956-50791975 | None:intergenic | 40.0% | |
| GGTAAACTAGCCAATGTTGA+AGG | - | chr3.4:50791882-50791901 | None:intergenic | 40.0% | |
| TGAACACGAACTGAACAATC+TGG | - | chr3.4:50792470-50792489 | None:intergenic | 40.0% | |
| TGGAAAGAGAGAGGAACAAA+AGG | - | chr3.4:50791957-50791976 | None:intergenic | 40.0% | |
| TTGGCAGAATCCTTCAACAT+TGG | + | chr3.4:50791869-50791888 | MS.gene73116:CDS | 40.0% | |
| TTTCGAGAGGTAGAAGATGT+AGG | - | chr3.4:50792205-50792224 | None:intergenic | 40.0% | |
| ! | AGTAAGAGTACATGATGACG+TGG | - | chr3.4:50792392-50792411 | None:intergenic | 40.0% |
| ! | CAAATGGTCCCTTCTTCTTT+TGG | + | chr3.4:50792178-50792197 | MS.gene73116:CDS | 40.0% |
| !! | GAGTTGGTAAGAAGTGCAAT+AGG | - | chr3.4:50792363-50792382 | None:intergenic | 40.0% |
| AAGAAGAAGGGACCATTTGG+AGG | - | chr3.4:50792177-50792196 | None:intergenic | 45.0% | |
| AGAAGAAGGGACCATTTGGA+GGG | - | chr3.4:50792176-50792195 | None:intergenic | 45.0% | |
| AGAGAGGAACAAAAGGGATG+AGG | - | chr3.4:50791950-50791969 | None:intergenic | 45.0% | |
| AGGTGCCAATAGCCATAATG+AGG | - | chr3.4:50792092-50792111 | None:intergenic | 45.0% | |
| ATAACACATGATTGGGACGG+TGG | - | chr3.4:50792310-50792329 | None:intergenic | 45.0% | |
| CAATAGCCATAATGAGGGAG+AGG | - | chr3.4:50792086-50792105 | None:intergenic | 45.0% | |
| CTCTCCCTCATTATGGCTAT+TGG | + | chr3.4:50792084-50792103 | MS.gene73116:CDS | 45.0% | |
| GAACTGAACAATCTGGCAGT+CGG | - | chr3.4:50792463-50792482 | None:intergenic | 45.0% | |
| GAGAGTGAGGGAGAGATAAA+AGG | - | chr3.4:50791983-50792002 | None:intergenic | 45.0% | |
| GAGGAATGAGAGACGTTTGA+TGG | - | chr3.4:50792271-50792290 | None:intergenic | 45.0% | |
| GAGGGAGAGATAAAAGGCTA+TGG | - | chr3.4:50791977-50791996 | None:intergenic | 45.0% | |
| GATGTAGGCCCAAAAGAAGA+AGG | - | chr3.4:50792190-50792209 | None:intergenic | 45.0% | |
| GGTGCCAATAGCCATAATGA+GGG | - | chr3.4:50792091-50792110 | None:intergenic | 45.0% | |
| GTTGAAGGATTCTGCCAATG+AGG | - | chr3.4:50791867-50791886 | None:intergenic | 45.0% | |
| TACTACTTCCTCACCACTGT+TGG | + | chr3.4:50792408-50792427 | MS.gene73116:CDS | 45.0% | |
| TATTATCACTTCGGATCCGG+TGG | + | chr3.4:50792516-50792535 | MS.gene73116:CDS | 45.0% | |
| ! | AGAGTACATGATGACGTGGA+CGG | - | chr3.4:50792388-50792407 | None:intergenic | 45.0% |
| ! | GACGTTTGATGGATCTTGAG+AGG | - | chr3.4:50792260-50792279 | None:intergenic | 45.0% |
| AAGGGTTTGAGGAAGTGAGG+TGG | - | chr3.4:50792033-50792052 | None:intergenic | 50.0% | |
| AGCCATAATGAGGGAGAGGA+TGG | - | chr3.4:50792082-50792101 | None:intergenic | 50.0% | |
| AGGAACAAAAGGGATGAGGC+TGG | - | chr3.4:50791946-50791965 | None:intergenic | 50.0% | |
| AGGGTTTGAGGAAGTGAGGT+GGG | - | chr3.4:50792032-50792051 | None:intergenic | 50.0% | |
| CTCCATCCTCTCCCTCATTA+TGG | + | chr3.4:50792077-50792096 | MS.gene73116:CDS | 50.0% | |
| GAAGAAGGGACCATTTGGAG+GGG | - | chr3.4:50792175-50792194 | None:intergenic | 50.0% | |
| GAAGAGGAGAAGGAGAGTGA+GGG | - | chr3.4:50791995-50792014 | None:intergenic | 50.0% | |
| GTGAAGGGTTTGAGGAAGTG+AGG | - | chr3.4:50792036-50792055 | None:intergenic | 50.0% | |
| TAATGAGGGAGAGGATGGAG+AGG | - | chr3.4:50792077-50792096 | None:intergenic | 50.0% | |
| TGATTGGGACGGTGGAATGA+TGG | - | chr3.4:50792302-50792321 | None:intergenic | 50.0% | |
| TGGAATGATGGTACACGTGG+AGG | - | chr3.4:50792290-50792309 | None:intergenic | 50.0% | |
| TTGAGGAAGTGAGGTGGGAT+AGG | - | chr3.4:50792027-50792046 | None:intergenic | 50.0% | |
| ! | CATTTGGAGGGGTATGAGGA+GGG | - | chr3.4:50792164-50792183 | None:intergenic | 50.0% |
| AGGAAGTGAGGTGGGATAGG+TGG | - | chr3.4:50792024-50792043 | None:intergenic | 55.0% | |
| AGGTTGTGGAGTGCGGTGAA+GGG | - | chr3.4:50792051-50792070 | None:intergenic | 55.0% | |
| ATGAGGAGGGAAGCAGATGG+TGG | - | chr3.4:50792151-50792170 | None:intergenic | 55.0% | |
| ATGAGGCTGGAGTGTGAGGA+GGG | - | chr3.4:50791933-50791952 | None:intergenic | 55.0% | |
| CCTCCTCATACCCCTCCAAA+TGG | + | chr3.4:50792162-50792181 | MS.gene73116:CDS | 55.0% | |
| CGGTGGAATGATGGTACACG+TGG | - | chr3.4:50792293-50792312 | None:intergenic | 55.0% | |
| GAGGATGAGGTTGTGGAGTG+CGG | - | chr3.4:50792058-50792077 | None:intergenic | 55.0% | |
| GATGACGTGGACGGATGAGT+TGG | - | chr3.4:50792379-50792398 | None:intergenic | 55.0% | |
| GGAAGAGGAGAAGGAGAGTG+AGG | - | chr3.4:50791996-50792015 | None:intergenic | 55.0% | |
| GGAAGTGAGGTGGGATAGGT+GGG | - | chr3.4:50792023-50792042 | None:intergenic | 55.0% | |
| GGATGGAGAGGATGAGGTTG+TGG | - | chr3.4:50792065-50792084 | None:intergenic | 55.0% | |
| GGTATGAGGAGGGAAGCAGA+TGG | - | chr3.4:50792154-50792173 | None:intergenic | 55.0% | |
| GTAACGACGCGTTTCCAAGG+CGG | - | chr3.4:50792441-50792460 | None:intergenic | 55.0% | |
| GTCGGATTCCAACAGTGGTG+AGG | - | chr3.4:50792419-50792438 | None:intergenic | 55.0% | |
| TATCACTTCGGATCCGGTGG+TGG | + | chr3.4:50792519-50792538 | MS.gene73116:CDS | 55.0% | |
| TCGGTAACGACGCGTTTCCA+AGG | - | chr3.4:50792444-50792463 | None:intergenic | 55.0% | |
| ! | CCATTTGGAGGGGTATGAGG+AGG | - | chr3.4:50792165-50792184 | None:intergenic | 55.0% |
| ! | GGACCATTTGGAGGGGTATG+AGG | - | chr3.4:50792168-50792187 | None:intergenic | 55.0% |
| !! | CGTGTGGGTTAGGATGGTGA+GGG | - | chr3.4:50792115-50792134 | None:intergenic | 55.0% |
| !! | GATGCTCTGGGATGAAGGCT+TGG | + | chr3.4:50792544-50792563 | MS.gene73116:CDS | 55.0% |
| !! | GTTAGGCGTGTGGGTTAGGA+TGG | - | chr3.4:50792121-50792140 | None:intergenic | 55.0% |
| !! | TGGTGGATGCTCTGGGATGA+AGG | + | chr3.4:50792539-50792558 | MS.gene73116:CDS | 55.0% |
| AGGCGGTCGGATTCCAACAG+TGG | - | chr3.4:50792424-50792443 | None:intergenic | 60.0% | |
| AGGGATGAGGCTGGAGTGTG+AGG | - | chr3.4:50791937-50791956 | None:intergenic | 60.0% | |
| CTGTTGGAATCCGACCGCCT+TGG | + | chr3.4:50792424-50792443 | MS.gene73116:CDS | 60.0% | |
| GAGGTGGGATAGGTGGGAGA+GGG | - | chr3.4:50792017-50792036 | None:intergenic | 60.0% | |
| GAGGTTGTGGAGTGCGGTGA+AGG | - | chr3.4:50792052-50792071 | None:intergenic | 60.0% | |
| GATGAGGCTGGAGTGTGAGG+AGG | - | chr3.4:50791934-50791953 | None:intergenic | 60.0% | |
| GGAGGTTAGGCGTGTGGGTT+AGG | - | chr3.4:50792125-50792144 | None:intergenic | 60.0% | |
| GGAGTGCGGTGAAGGGTTTG+AGG | - | chr3.4:50792044-50792063 | None:intergenic | 60.0% | |
| GGATAGGTGGGAGAGGGAAG+AGG | - | chr3.4:50792011-50792030 | None:intergenic | 60.0% | |
| GGGAGAGGATGGAGAGGATG+AGG | - | chr3.4:50792071-50792090 | None:intergenic | 60.0% | |
| GTGGGAGAGGGAAGAGGAGA+AGG | - | chr3.4:50792005-50792024 | None:intergenic | 60.0% | |
| TGAGGTGGGATAGGTGGGAG+AGG | - | chr3.4:50792018-50792037 | None:intergenic | 60.0% | |
| !! | CAGATGGTGGAGCGGAGGTT+AGG | - | chr3.4:50792138-50792157 | None:intergenic | 60.0% |
| !! | GAGGGAAGCAGATGGTGGAG+CGG | - | chr3.4:50792146-50792165 | None:intergenic | 60.0% |
| !! | GCGTGTGGGTTAGGATGGTG+AGG | - | chr3.4:50792116-50792135 | None:intergenic | 60.0% |
| !! | GTGGGTTAGGATGGTGAGGG+AGG | - | chr3.4:50792112-50792131 | None:intergenic | 60.0% |
| CGACGCGTTTCCAAGGCGGT+CGG | - | chr3.4:50792437-50792456 | None:intergenic | 65.0% | |
| GGAGCGGAGGTTAGGCGTGT+GGG | - | chr3.4:50792130-50792149 | None:intergenic | 65.0% | |
| TGGAGCGGAGGTTAGGCGTG+TGG | - | chr3.4:50792131-50792150 | None:intergenic | 65.0% | |
| ! | CACTTCGGATCCGGTGGTGG+TGG | + | chr3.4:50792522-50792541 | MS.gene73116:CDS | 65.0% |
| ! | CCCAGAGCATCCACCACCAC+CGG | - | chr3.4:50792535-50792554 | None:intergenic | 65.0% |
| !! | CCGGTGGTGGTGGATGCTCT+GGG | + | chr3.4:50792532-50792551 | MS.gene73116:CDS | 65.0% |
| !! | GGAAGCAGATGGTGGAGCGG+AGG | - | chr3.4:50792143-50792162 | None:intergenic | 65.0% |
| !! | TCCGGTGGTGGTGGATGCTC+TGG | + | chr3.4:50792531-50792550 | MS.gene73116:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 50791856 | 50792677 | 50791856 | ID=MS.gene73116 |
| chr3.4 | mRNA | 50791856 | 50792677 | 50791856 | ID=MS.gene73116.t1;Parent=MS.gene73116 |
| chr3.4 | exon | 50791856 | 50792677 | 50791856 | ID=MS.gene73116.t1.exon1;Parent=MS.gene73116.t1 |
| chr3.4 | CDS | 50791856 | 50792677 | 50791856 | ID=cds.MS.gene73116.t1;Parent=MS.gene73116.t1 |
| Gene Sequence |
| Protein sequence |
