Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73459.t1 | XP_013470102.1 | 99.4 | 340 | 2 | 0 | 1 | 340 | 1 | 340 | 1.00E-176 | 629.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73459.t1 | Q01859 | 81.5 | 340 | 59 | 1 | 1 | 340 | 1 | 336 | 1.7e-148 | 526.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73459.t1 | A0A072W1H5 | 99.4 | 340 | 2 | 0 | 1 | 340 | 1 | 340 | 7.3e-177 | 629.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049321 | MS.gene73459 | 0.809034 | 2.31E-50 | -1.69E-46 |
| MS.gene04995 | MS.gene73459 | 0.864186 | 1.46E-64 | -1.69E-46 |
| MS.gene051064 | MS.gene73459 | -0.8152 | 1.04E-51 | -1.69E-46 |
| MS.gene051926 | MS.gene73459 | 0.818728 | 1.68E-52 | -1.69E-46 |
| MS.gene052358 | MS.gene73459 | 0.80013 | 1.66E-48 | -1.69E-46 |
| MS.gene058498 | MS.gene73459 | -0.817153 | 3.82E-52 | -1.69E-46 |
| MS.gene059350 | MS.gene73459 | 0.804566 | 2.03E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene73459 | 0.820783 | 5.71E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73459.t1 | MTR_1g108765 | 99.412 | 340 | 2 | 0 | 1 | 340 | 1 | 340 | 0.0 | 687 |
| MS.gene73459.t1 | MTR_1g108770 | 88.630 | 343 | 36 | 3 | 1 | 340 | 1 | 343 | 0.0 | 575 |
| MS.gene73459.t1 | MTR_4g451275 | 64.906 | 265 | 86 | 3 | 82 | 340 | 17 | 280 | 2.93e-103 | 313 |
| MS.gene73459.t1 | MTR_7g117920 | 64.662 | 266 | 85 | 4 | 82 | 340 | 17 | 280 | 4.97e-103 | 306 |
| MS.gene73459.t1 | MTR_0002s0650 | 65.152 | 264 | 83 | 4 | 84 | 340 | 19 | 280 | 4.32e-102 | 313 |
| MS.gene73459.t1 | MTR_6g055020 | 64.286 | 266 | 86 | 4 | 82 | 340 | 17 | 280 | 5.27e-102 | 302 |
| MS.gene73459.t1 | MTR_7g021780 | 65.038 | 266 | 84 | 4 | 82 | 340 | 17 | 280 | 1.47e-101 | 311 |
| MS.gene73459.t1 | MTR_7g033765 | 65.038 | 266 | 84 | 4 | 82 | 340 | 17 | 280 | 2.05e-101 | 311 |
| MS.gene73459.t1 | MTR_3g035730 | 64.286 | 266 | 86 | 4 | 82 | 340 | 17 | 280 | 2.09e-100 | 305 |
| MS.gene73459.t1 | MTR_7g033755 | 58.025 | 243 | 61 | 4 | 104 | 340 | 1 | 208 | 3.47e-80 | 253 |
| MS.gene73459.t1 | MTR_2g066870 | 65.426 | 188 | 61 | 2 | 159 | 343 | 29 | 215 | 1.19e-78 | 247 |
| MS.gene73459.t1 | MTR_2g066860 | 60.870 | 161 | 50 | 4 | 1 | 159 | 2 | 151 | 1.97e-52 | 172 |
| MS.gene73459.t1 | MTR_4g010980 | 47.761 | 134 | 64 | 2 | 83 | 210 | 15 | 148 | 5.61e-31 | 115 |
| MS.gene73459.t1 | MTR_7g498250 | 84.286 | 70 | 10 | 1 | 1 | 70 | 1 | 69 | 2.37e-17 | 78.2 |
| MS.gene73459.t1 | MTR_7g498250 | 85.507 | 69 | 9 | 1 | 1 | 69 | 1 | 68 | 3.92e-17 | 76.3 |
| MS.gene73459.t1 | MTR_3g065340 | 40.876 | 137 | 49 | 8 | 2 | 138 | 3 | 107 | 3.62e-16 | 75.1 |
| MS.gene73459.t1 | MTR_0212s0040 | 25.000 | 220 | 148 | 3 | 124 | 335 | 64 | 274 | 5.63e-15 | 76.6 |
| MS.gene73459.t1 | MTR_3g099550 | 77.778 | 45 | 10 | 0 | 98 | 142 | 10 | 54 | 1.51e-14 | 69.3 |
| MS.gene73459.t1 | MTR_0002s0550 | 26.064 | 188 | 128 | 3 | 147 | 333 | 86 | 263 | 2.45e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73459.t1 | AT5G08680 | 80.323 | 310 | 54 | 3 | 37 | 343 | 41 | 346 | 3.40e-177 | 504 |
| MS.gene73459.t1 | AT5G08690 | 79.114 | 316 | 58 | 3 | 30 | 340 | 28 | 340 | 2.72e-172 | 491 |
| MS.gene73459.t1 | AT5G08670 | 79.612 | 309 | 58 | 2 | 37 | 343 | 38 | 343 | 5.17e-172 | 490 |
| MS.gene73459.t1 | ATCG00480 | 64.151 | 265 | 88 | 3 | 82 | 340 | 17 | 280 | 5.53e-102 | 310 |
| MS.gene73459.t1 | ATMG01190 | 26.500 | 200 | 130 | 3 | 144 | 335 | 84 | 274 | 4.70e-15 | 76.6 |
| MS.gene73459.t1 | AT2G07698 | 26.804 | 194 | 125 | 3 | 150 | 335 | 360 | 544 | 7.64e-15 | 76.3 |
Find 110 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGCCCGTGTCGGTCTTAC+TGG | 0.200311 | 1.4:-83414194 | MS.gene73459:CDS |
| GATCCTTGTTACTGGTATTA+AGG | 0.259182 | 1.4:-83414772 | MS.gene73459:intron |
| GGACGTATCATGAATGTTAT+TGG | 0.260657 | 1.4:-83414997 | MS.gene73459:CDS |
| AAAATTACTGATGAATTTAC+TGG | 0.279082 | 1.4:-83415928 | MS.gene73459:CDS |
| GGCCAAGTTTGTCAGGTTAT+TGG | 0.292965 | 1.4:-83415892 | MS.gene73459:CDS |
| TTCTCTGTGTTTGCTGGTGT+TGG | 0.303687 | 1.4:-83414442 | MS.gene73459:CDS |
| GGTGGTTTCTCTGTGTTTGC+TGG | 0.310509 | 1.4:-83414448 | MS.gene73459:CDS |
| GTTGGAAGTGGCTCAGCATT+TGG | 0.326827 | 1.4:-83415785 | MS.gene73459:CDS |
| AGCTGGTGCGGCGGCGGCAG+CGG | 0.335740 | 1.4:+83415993 | None:intergenic |
| CCGACACGGGCACGAGCACC+AGG | 0.372154 | 1.4:+83414203 | None:intergenic |
| ATCCAATCTTTCCTCCCCTT+TGG | 0.376397 | 1.4:+83414632 | None:intergenic |
| ACTGATGAATTTACTGGAAA+AGG | 0.377841 | 1.4:-83415922 | MS.gene73459:CDS |
| GCATTTAGGTTCCCGTTGGC+AGG | 0.378643 | 1.4:-83415029 | MS.gene73459:intron |
| AAGAAGGAGGTTCCCGGAGG+TGG | 0.379753 | 1.4:-83415952 | MS.gene73459:CDS |
| ATTGGATTGTTTGGTGGTGC+TGG | 0.384032 | 1.4:-83414616 | MS.gene73459:CDS |
| GGAGGAAAGATTGGATTGTT+TGG | 0.394972 | 1.4:-83414625 | MS.gene73459:CDS |
| TCTAGATCATTCTTCGAGAT+TGG | 0.401462 | 1.4:-83415809 | MS.gene73459:CDS |
| GCAGGAGCTTCTCTATGAAT+AGG | 0.403583 | 1.4:+83414822 | None:intergenic |
| ATCTTTCCTCCCCTTTGGTA+TGG | 0.406086 | 1.4:+83414637 | None:intergenic |
| CCGGCGAAGAAGGAGGTTCC+CGG | 0.406125 | 1.4:-83415958 | MS.gene73459:CDS |
| CCCGTTGGCAGGGCTACCCT+TGG | 0.406509 | 1.4:-83415018 | MS.gene73459:CDS |
| TTGGAAGTGGCTCAGCATTT+GGG | 0.411969 | 1.4:-83415784 | MS.gene73459:CDS |
| TACCAAAGGGGAGGAAAGAT+TGG | 0.412235 | 1.4:-83414634 | MS.gene73459:CDS |
| GAACAACAGATCCTTGTTAC+TGG | 0.412746 | 1.4:-83414780 | MS.gene73459:CDS |
| AGACGGAGCTGGTGCGGCGG+CGG | 0.416189 | 1.4:+83415987 | None:intergenic |
| CATAAGGTGAAGCGCGAGAT+TGG | 0.420817 | 1.4:+83416049 | None:intergenic |
| CACCAATAACCTGACAAACT+TGG | 0.427600 | 1.4:+83415890 | None:intergenic |
| TTCGAGATTGGTGTTGGAAG+TGG | 0.436166 | 1.4:-83415797 | MS.gene73459:CDS |
| AGCGGTCGGCCAAGTTTGTC+AGG | 0.437205 | 1.4:-83415899 | MS.gene73459:CDS |
| TTCTTCGCCGGAGGCGCAGA+CGG | 0.437983 | 1.4:+83415970 | None:intergenic |
| GCCGGAGGCGCAGACGGAGC+TGG | 0.440470 | 1.4:+83415976 | None:intergenic |
| GATGTTGAGGCAGTGATTGA+TGG | 0.442204 | 1.4:+83416084 | None:intergenic |
| ACCAGCTCCGTCTGCGCCTC+CGG | 0.443943 | 1.4:-83415977 | MS.gene73459:CDS |
| GTCTGCGCCTCCGGCGAAGA+AGG | 0.456242 | 1.4:-83415968 | MS.gene73459:CDS |
| AGTCAGCAACGCGGTTTAAG+AGG | 0.462534 | 1.4:+83416022 | None:intergenic |
| TTGTTTGGTGGTGCTGGTGT+AGG | 0.469965 | 1.4:-83414610 | MS.gene73459:CDS |
| ATAAGGTGAAGCGCGAGATT+GGG | 0.471370 | 1.4:+83416050 | None:intergenic |
| TGAATAGATATTTACACTGA+TGG | 0.479353 | 1.4:+83415681 | None:intergenic |
| GTAATTGGCAGCAGCAAGCT+TGG | 0.483462 | 1.4:-83413914 | MS.gene73459:intron |
| CCAAGGGTAGCCCTGCCAAC+GGG | 0.484569 | 1.4:+83415018 | None:intergenic |
| GGAGAACCTATCGATCATAA+AGG | 0.484786 | 1.4:-83414976 | MS.gene73459:CDS |
| CCCTTTGGTATGGTGCAAGC+AGG | 0.487695 | 1.4:+83414647 | None:intergenic |
| TCCGATCTTGACTGCTCTTG+AGG | 0.488534 | 1.4:-83415833 | MS.gene73459:CDS |
| CATTAAGCTGGGTGAAAAGC+AGG | 0.492871 | 1.4:-83414365 | MS.gene73459:intron |
| GAAGATGGCTTCACGCAGAT+TGG | 0.511649 | 1.4:-83416151 | None:intergenic |
| GGAAAGATTGGATTGTTTGG+TGG | 0.512411 | 1.4:-83414622 | MS.gene73459:CDS |
| CGCAGACGGAGCTGGTGCGG+CGG | 0.513405 | 1.4:+83415984 | None:intergenic |
| TGAGAGTGGTGTCATTAAGC+TGG | 0.514665 | 1.4:-83414377 | MS.gene73459:CDS |
| TCATTCTTCGAGATTGGTGT+TGG | 0.515515 | 1.4:-83415803 | MS.gene73459:CDS |
| CCGGGAACCTCCTTCTTCGC+CGG | 0.517979 | 1.4:+83415958 | None:intergenic |
| AACAATGTTGCTAAGGCTCA+TGG | 0.524856 | 1.4:-83414559 | MS.gene73459:intron |
| AGCAAATGTGCTCTTGTGTA+TGG | 0.527028 | 1.4:-83414242 | MS.gene73459:CDS |
| ACTTATCAACAATGTTGCTA+AGG | 0.530040 | 1.4:-83414566 | MS.gene73459:CDS |
| CTGAAGGTGTTGTTCGTGGA+TGG | 0.535684 | 1.4:-83415726 | MS.gene73459:CDS |
| GTGGCTCAGCATTTGGGTGA+AGG | 0.538038 | 1.4:-83415778 | MS.gene73459:CDS |
| CATTTAGGTTCCCGTTGGCA+GGG | 0.541826 | 1.4:-83415028 | MS.gene73459:intron |
| AATTCGCCTTTATGATCGAT+AGG | 0.542417 | 1.4:+83414970 | None:intergenic |
| CGGTTTAAGAGGTAGGCATA+AGG | 0.543612 | 1.4:+83416033 | None:intergenic |
| CCTGCTTGCACCATACCAAA+GGG | 0.545094 | 1.4:-83414647 | MS.gene73459:CDS |
| GCTACTGAAGGTGTTGTTCG+TGG | 0.547853 | 1.4:-83415730 | MS.gene73459:CDS |
| GTTGCTTGCTCAACAAAAGC+AGG | 0.548745 | 1.4:+83414804 | None:intergenic |
| AGGCGCAGACGGAGCTGGTG+CGG | 0.551051 | 1.4:+83415981 | None:intergenic |
| ACCTCAAGAGCAGTCAAGAT+CGG | 0.553967 | 1.4:+83415832 | None:intergenic |
| CCTGGTGCTCGTGCCCGTGT+CGG | 0.555324 | 1.4:-83414203 | MS.gene73459:CDS |
| GTTGACGTCAGATTTGAAGA+AGG | 0.555849 | 1.4:-83415862 | MS.gene73459:CDS |
| TCCAAGGGTAGCCCTGCCAA+CGG | 0.557056 | 1.4:+83415017 | None:intergenic |
| AGAAGGAGGTTCCCGGAGGT+GGG | 0.562284 | 1.4:-83415951 | MS.gene73459:CDS |
| GAATAGATATTTACACTGAT+GGG | 0.564594 | 1.4:+83415682 | None:intergenic |
| GACACGGGCACGAGCACCAG+GGG | 0.566580 | 1.4:+83414205 | None:intergenic |
| ACCTGCTTGCACCATACCAA+AGG | 0.568701 | 1.4:-83414648 | MS.gene73459:CDS |
| GGAGGTTAGCCTCGATGTTG+AGG | 0.570201 | 1.4:+83416071 | None:intergenic |
| GTTTCGATGAAGATCGGCGA+AGG | 0.571803 | 1.4:+83416106 | None:intergenic |
| TTGATGGTTTCGATGAAGAT+CGG | 0.572741 | 1.4:+83416100 | None:intergenic |
| ATGAATAGGCAAATAATGCT+CGG | 0.578382 | 1.4:+83414836 | None:intergenic |
| GGAACCTCCTTCTTCGCCGG+AGG | 0.581216 | 1.4:+83415961 | None:intergenic |
| TAACATTCATGATACGTCCA+AGG | 0.587125 | 1.4:+83415001 | None:intergenic |
| TATTGCATTTAGGTTCCCGT+TGG | 0.591161 | 1.4:-83415033 | MS.gene73459:intron |
| TGCGCCTCCGGCGAAGAAGG+AGG | 0.594849 | 1.4:-83415965 | MS.gene73459:CDS |
| TTCAGTAGCATCCATAGCAA+TGG | 0.599982 | 1.4:+83415744 | None:intergenic |
| TGTACAAGTCATTACCCTCA+CGG | 0.600998 | 1.4:+83414410 | None:intergenic |
| AGCAACGCGGTTTAAGAGGT+AGG | 0.605528 | 1.4:+83416026 | None:intergenic |
| AGGTGAAGCGCGAGATTGGG+AGG | 0.610480 | 1.4:+83416053 | None:intergenic |
| TTTACTGGAAAAGGAGCGGT+CGG | 0.611552 | 1.4:-83415913 | MS.gene73459:CDS |
| CGACACGGGCACGAGCACCA+GGG | 0.613887 | 1.4:+83414204 | None:intergenic |
| TGTTGTGAGAACCATTGCTA+TGG | 0.617952 | 1.4:-83415755 | MS.gene73459:CDS |
| TGGTGCTTACTTGAGTAAAG+CGG | 0.618849 | 1.4:+83414102 | None:intergenic |
| AAGTCCAGTAAGACCGACAC+GGG | 0.620214 | 1.4:+83414190 | None:intergenic |
| GTACAAGTCATTACCCTCAC+GGG | 0.622213 | 1.4:+83414411 | None:intergenic |
| CATCTTGTCCTTCAGCATCA+CGG | 0.623861 | 1.4:+83414150 | None:intergenic |
| GAGAGTGGTGTCATTAAGCT+GGG | 0.624808 | 1.4:-83414376 | MS.gene73459:CDS |
| TTCAAATCTGACGTCAACAA+CGG | 0.631966 | 1.4:+83415867 | None:intergenic |
| GAGCATTTCCGTGATGCTGA+AGG | 0.641193 | 1.4:-83414158 | MS.gene73459:CDS |
| GGATGGAGAGTTCTCAACAC+TGG | 0.642951 | 1.4:-83415709 | MS.gene73459:CDS |
| AACATTCATGATACGTCCAA+GGG | 0.646240 | 1.4:+83415002 | None:intergenic |
| TTTCGATGAAGATCGGCGAA+GGG | 0.656946 | 1.4:+83416107 | None:intergenic |
| TCAAGAGCAGTCAAGATCGG+AGG | 0.674140 | 1.4:+83415835 | None:intergenic |
| CTTGCACCATACCAAAGGGG+AGG | 0.675495 | 1.4:-83414643 | MS.gene73459:CDS |
| TGAATTTACTGGAAAAGGAG+CGG | 0.685743 | 1.4:-83415917 | MS.gene73459:CDS |
| ATTGCTATGGATGCTACTGA+AGG | 0.691576 | 1.4:-83415742 | MS.gene73459:CDS |
| TTACCTTAATACCAGTAACA+AGG | 0.693188 | 1.4:+83414769 | None:intergenic |
| TACAGAGAAATGATTGAGAG+TGG | 0.693204 | 1.4:-83414391 | MS.gene73459:CDS |
| TAAGTCCAGTAAGACCGACA+CGG | 0.693275 | 1.4:+83414189 | None:intergenic |
| GCAAGTTTCAGACACAAACA+CGG | 0.694463 | 1.4:+83413879 | None:intergenic |
| GTTGGAGAAAGAACCCGTGA+GGG | 0.695614 | 1.4:-83414424 | MS.gene73459:CDS |
| TGTTGGAGAAAGAACCCGTG+AGG | 0.716517 | 1.4:-83414425 | MS.gene73459:CDS |
| CAATCACTGCCTCAACATCG+AGG | 0.719323 | 1.4:-83416080 | MS.gene73459:CDS |
| ACACGGGCACGAGCACCAGG+GGG | 0.726552 | 1.4:+83414206 | None:intergenic |
| GCGAAGAAGGAGGTTCCCGG+AGG | 0.734342 | 1.4:-83415955 | MS.gene73459:CDS |
| CTGCTTGCACCATACCAAAG+GGG | 0.735053 | 1.4:-83414646 | MS.gene73459:CDS |
| CGGTTGCATAGTCAGCAACG+CGG | 0.742675 | 1.4:+83416013 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAAATTTTAAGGAAAT+GGG | + | chr1.4:83415292-83415311 | None:intergenic | 10.0% |
| !!! | ATTTCCTTAAAATTTTTTAT+GGG | - | chr1.4:83415292-83415311 | MS.gene73459:intron | 10.0% |
| !! | AAAAAAAAATAAGGCAAAAT+TGG | + | chr1.4:83415339-83415358 | None:intergenic | 15.0% |
| !! | GAAAAGTTATAGAAATTAAA+CGG | + | chr1.4:83414930-83414949 | None:intergenic | 15.0% |
| !! | TAGACTAAAAATAAATTTAG+AGG | + | chr1.4:83415085-83415104 | None:intergenic | 15.0% |
| !!! | CATAAAAAATTTTAAGGAAA+TGG | + | chr1.4:83415293-83415312 | None:intergenic | 15.0% |
| !!! | CATTTCCTTAAAATTTTTTA+TGG | - | chr1.4:83415291-83415310 | MS.gene73459:intron | 15.0% |
| !!! | TTTTTATTGTTTTTTGATTG+TGG | - | chr1.4:83414556-83414575 | MS.gene73459:intron | 15.0% |
| !! | AAAATTACTGATGAATTTAC+TGG | - | chr1.4:83414091-83414110 | MS.gene73459:intron | 20.0% |
| !! | ATGAACAATATTATTGAATG+TGG | + | chr1.4:83415705-83415724 | None:intergenic | 20.0% |
| !! | CAACCTATGAAAAAAAAATA+AGG | + | chr1.4:83415348-83415367 | None:intergenic | 20.0% |
| !!! | ATCTGATTTTGAGATAATTT+TGG | - | chr1.4:83414428-83414447 | MS.gene73459:CDS | 20.0% |
| !!! | TAAGTTTTGATTTTTTGAGA+AGG | - | chr1.4:83414520-83414539 | MS.gene73459:intron | 20.0% |
| !!! | TGAATTTTTTTTGACTTTAC+TGG | - | chr1.4:83414386-83414405 | MS.gene73459:CDS | 20.0% |
| !!! | TTGCCTTATTTTTTTTTCAT+AGG | - | chr1.4:83415342-83415361 | MS.gene73459:intron | 20.0% |
| !!! | TTTGCCCATAAAAAATTTTA+AGG | + | chr1.4:83415299-83415318 | None:intergenic | 20.0% |
| ! | CGTGATTACAGTAAATTAAA+CGG | + | chr1.4:83414656-83414675 | None:intergenic | 25.0% |
| ! | GAATAGATATTTACACTGAT+GGG | + | chr1.4:83414340-83414359 | None:intergenic | 25.0% |
| ! | TATATCCTAACTTAATGCTT+TGG | - | chr1.4:83415483-83415502 | MS.gene73459:intron | 25.0% |
| ! | TGAATAGATATTTACACTGA+TGG | + | chr1.4:83414341-83414360 | None:intergenic | 25.0% |
| ! | TGTATCAAAGTCGTTAATTA+TGG | - | chr1.4:83415735-83415754 | MS.gene73459:CDS | 25.0% |
| ! | TTGCAATTAAAAGTAAAAGC+AGG | - | chr1.4:83414722-83414741 | MS.gene73459:intron | 25.0% |
| !! | AACATACTTAAAACGCTTTT+TGG | + | chr1.4:83414952-83414971 | None:intergenic | 25.0% |
| !! | AATTTTTATGTTGCGTTTCA+TGG | - | chr1.4:83414455-83414474 | MS.gene73459:intron | 25.0% |
| !! | AGTTTGCATTAGTAAGTTTT+GGG | + | chr1.4:83415959-83415978 | None:intergenic | 25.0% |
| !!! | ACGCTGTACTTATTTTAAAT+GGG | - | chr1.4:83414693-83414712 | MS.gene73459:intron | 25.0% |
| !!! | TACGCTGTACTTATTTTAAA+TGG | - | chr1.4:83414692-83414711 | MS.gene73459:intron | 25.0% |
| ACTGATGAATTTACTGGAAA+AGG | - | chr1.4:83414097-83414116 | MS.gene73459:intron | 30.0% | |
| ACTTATCAACAATGTTGCTA+AGG | - | chr1.4:83415453-83415472 | MS.gene73459:intron | 30.0% | |
| AGGAAAAACGGTTCTTATTA+TGG | - | chr1.4:83415429-83415448 | MS.gene73459:intron | 30.0% | |
| AGTCCAAAAGAAAGTCAAAT+TGG | + | chr1.4:83414842-83414861 | None:intergenic | 30.0% | |
| ATGAATAGGCAAATAATGCT+CGG | + | chr1.4:83415186-83415205 | None:intergenic | 30.0% | |
| CAAAAGTAAAAACCAATAGC+AGG | + | chr1.4:83414888-83414907 | None:intergenic | 30.0% | |
| CATAGTTGTGTATTGCATTT+AGG | - | chr1.4:83414976-83414995 | MS.gene73459:CDS | 30.0% | |
| TCATCAGTTGAAAATCACTA+TGG | + | chr1.4:83415138-83415157 | None:intergenic | 30.0% | |
| TTACCTTAATACCAGTAACA+AGG | + | chr1.4:83415253-83415272 | None:intergenic | 30.0% | |
| ! | CAGTTTGCATTAGTAAGTTT+TGG | + | chr1.4:83415960-83415979 | None:intergenic | 30.0% |
| ! | GATAAATGGGGTCTTTTTAA+TGG | - | chr1.4:83414605-83414624 | MS.gene73459:CDS | 30.0% |
| ! | TGGGTGCATGATTTAAATTT+TGG | + | chr1.4:83415940-83415959 | None:intergenic | 30.0% |
| ! | TGTTCTTTGTGTTTGGTAAT+TGG | - | chr1.4:83416090-83416109 | MS.gene73459:CDS | 30.0% |
| AACATTCATGATACGTCCAA+GGG | + | chr1.4:83415020-83415039 | None:intergenic | 35.0% | |
| AATTCGCCTTTATGATCGAT+AGG | + | chr1.4:83415052-83415071 | None:intergenic | 35.0% | |
| ATAAATTGCCCAAACCAAAC+AGG | + | chr1.4:83414633-83414652 | None:intergenic | 35.0% | |
| ATGTCAATCCTCGATAAATG+GGG | - | chr1.4:83414593-83414612 | MS.gene73459:CDS | 35.0% | |
| CAGAGAAACCACCTATTATA+TGG | + | chr1.4:83415564-83415583 | None:intergenic | 35.0% | |
| GAAAGTCAAATTGGAGCAAA+TGG | + | chr1.4:83414833-83414852 | None:intergenic | 35.0% | |
| GAACACATGTTCTTTGTGTT+TGG | - | chr1.4:83416083-83416102 | MS.gene73459:CDS | 35.0% | |
| GAGTGTTTCCATATAATAGG+TGG | - | chr1.4:83415553-83415572 | MS.gene73459:intron | 35.0% | |
| GATCCTTGTTACTGGTATTA+AGG | - | chr1.4:83415247-83415266 | MS.gene73459:intron | 35.0% | |
| GATGTCAATCCTCGATAAAT+GGG | - | chr1.4:83414592-83414611 | MS.gene73459:CDS | 35.0% | |
| GCTGAGTGTTTCCATATAAT+AGG | - | chr1.4:83415550-83415569 | MS.gene73459:intron | 35.0% | |
| GGACGTATCATGAATGTTAT+TGG | - | chr1.4:83415022-83415041 | MS.gene73459:CDS | 35.0% | |
| TAAAAAGACCCCATTTATCG+AGG | + | chr1.4:83414604-83414623 | None:intergenic | 35.0% | |
| TAACATTCATGATACGTCCA+AGG | + | chr1.4:83415021-83415040 | None:intergenic | 35.0% | |
| TACAGAGAAATGATTGAGAG+TGG | - | chr1.4:83415628-83415647 | MS.gene73459:intron | 35.0% | |
| TCTAGATCATTCTTCGAGAT+TGG | - | chr1.4:83414210-83414229 | MS.gene73459:CDS | 35.0% | |
| TGAATTTACTGGAAAAGGAG+CGG | - | chr1.4:83414102-83414121 | MS.gene73459:intron | 35.0% | |
| TGATGTCAATCCTCGATAAA+TGG | - | chr1.4:83414591-83414610 | MS.gene73459:CDS | 35.0% | |
| TTCAAATCTGACGTCAACAA+CGG | + | chr1.4:83414155-83414174 | None:intergenic | 35.0% | |
| ! | TTGATGGTTTCGATGAAGAT+CGG | + | chr1.4:83413922-83413941 | None:intergenic | 35.0% |
| !! | GCTCCAATTTGACTTTCTTT+TGG | - | chr1.4:83414836-83414855 | MS.gene73459:CDS | 35.0% |
| AACAATGTTGCTAAGGCTCA+TGG | - | chr1.4:83415460-83415479 | MS.gene73459:intron | 40.0% | |
| AGCAAATGTGCTCTTGTGTA+TGG | - | chr1.4:83415777-83415796 | MS.gene73459:CDS | 40.0% | |
| ATGTTGCGTTTCATGGATCT+GGG | - | chr1.4:83414462-83414481 | MS.gene73459:intron | 40.0% | |
| ATTGCTATGGATGCTACTGA+AGG | - | chr1.4:83414277-83414296 | MS.gene73459:intron | 40.0% | |
| CACCAATAACCTGACAAACT+TGG | + | chr1.4:83414132-83414151 | None:intergenic | 40.0% | |
| CAGTTCAATAGCACACAGTT+CGG | + | chr1.4:83416037-83416056 | None:intergenic | 40.0% | |
| GAACAACAGATCCTTGTTAC+TGG | - | chr1.4:83415239-83415258 | MS.gene73459:intron | 40.0% | |
| GCAAGTTTCAGACACAAACA+CGG | + | chr1.4:83416143-83416162 | None:intergenic | 40.0% | |
| GGAAAGATTGGATTGTTTGG+TGG | - | chr1.4:83415397-83415416 | MS.gene73459:intron | 40.0% | |
| GGAGAACCTATCGATCATAA+AGG | - | chr1.4:83415043-83415062 | MS.gene73459:intron | 40.0% | |
| GGAGGAAAGATTGGATTGTT+TGG | - | chr1.4:83415394-83415413 | MS.gene73459:intron | 40.0% | |
| GTCAGTGCTACATAGCTATA+TGG | - | chr1.4:83414778-83414797 | MS.gene73459:CDS | 40.0% | |
| GTTGACGTCAGATTTGAAGA+AGG | - | chr1.4:83414157-83414176 | MS.gene73459:CDS | 40.0% | |
| TATGTTGCGTTTCATGGATC+TGG | - | chr1.4:83414461-83414480 | MS.gene73459:intron | 40.0% | |
| TCATTCTTCGAGATTGGTGT+TGG | - | chr1.4:83414216-83414235 | MS.gene73459:CDS | 40.0% | |
| TGGTGCTTACTTGAGTAAAG+CGG | + | chr1.4:83415920-83415939 | None:intergenic | 40.0% | |
| TGTACAAGTCATTACCCTCA+CGG | + | chr1.4:83415612-83415631 | None:intergenic | 40.0% | |
| TGTTGTGAGAACCATTGCTA+TGG | - | chr1.4:83414264-83414283 | MS.gene73459:intron | 40.0% | |
| TTCAGTAGCATCCATAGCAA+TGG | + | chr1.4:83414278-83414297 | None:intergenic | 40.0% | |
| ! | AAGCGCCAAAGCATTAAGTT+AGG | + | chr1.4:83415491-83415510 | None:intergenic | 40.0% |
| ! | ACTGTGTGCTATTGAACTGT+TGG | - | chr1.4:83416038-83416057 | MS.gene73459:CDS | 40.0% |
| ! | ATCAGTAATTTTCCCACCTC+CGG | + | chr1.4:83414083-83414102 | None:intergenic | 40.0% |
| ! | TATTGCATTTAGGTTCCCGT+TGG | - | chr1.4:83414986-83415005 | MS.gene73459:CDS | 40.0% |
| ! | TCTTTTTAATGGCGCCTGTT+TGG | - | chr1.4:83414616-83414635 | MS.gene73459:CDS | 40.0% |
| ACCTCAAGAGCAGTCAAGAT+CGG | + | chr1.4:83414190-83414209 | None:intergenic | 45.0% | |
| ATAAGGTGAAGCGCGAGATT+GGG | + | chr1.4:83413972-83413991 | None:intergenic | 45.0% | |
| ATCCAATCTTTCCTCCCCTT+TGG | + | chr1.4:83415390-83415409 | None:intergenic | 45.0% | |
| ATCTTTCCTCCCCTTTGGTA+TGG | + | chr1.4:83415385-83415404 | None:intergenic | 45.0% | |
| CAATAGCACACAGTTCGGTT+TGG | + | chr1.4:83416032-83416051 | None:intergenic | 45.0% | |
| CAGAGTAACACAGACACATG+TGG | + | chr1.4:83414759-83414778 | None:intergenic | 45.0% | |
| CATCTTGTCCTTCAGCATCA+CGG | + | chr1.4:83415872-83415891 | None:intergenic | 45.0% | |
| CATTAAGCTGGGTGAAAAGC+AGG | - | chr1.4:83415654-83415673 | MS.gene73459:intron | 45.0% | |
| CGGTTTAAGAGGTAGGCATA+AGG | + | chr1.4:83413989-83414008 | None:intergenic | 45.0% | |
| GATGTTGAGGCAGTGATTGA+TGG | + | chr1.4:83413938-83413957 | None:intergenic | 45.0% | |
| GCAGGAGCTTCTCTATGAAT+AGG | + | chr1.4:83415200-83415219 | None:intergenic | 45.0% | |
| GGACTTGAATCTTGCAAGCA+CGG | - | chr1.4:83414857-83414876 | MS.gene73459:intron | 45.0% | |
| GGCCAAGTTTGTCAGGTTAT+TGG | - | chr1.4:83414127-83414146 | MS.gene73459:CDS | 45.0% | |
| GTACAAGTCATTACCCTCAC+GGG | + | chr1.4:83415611-83415630 | None:intergenic | 45.0% | |
| GTTGCTTGCTCAACAAAAGC+AGG | + | chr1.4:83415218-83415237 | None:intergenic | 45.0% | |
| TAAGTCCAGTAAGACCGACA+CGG | + | chr1.4:83415833-83415852 | None:intergenic | 45.0% | |
| TACCAAAGGGGAGGAAAGAT+TGG | - | chr1.4:83415385-83415404 | MS.gene73459:intron | 45.0% | |
| TTAATGGCGCCTGTTTGGTT+TGG | - | chr1.4:83414621-83414640 | MS.gene73459:CDS | 45.0% | |
| TTGGAAGTGGCTCAGCATTT+GGG | - | chr1.4:83414235-83414254 | MS.gene73459:CDS | 45.0% | |
| TTTACTGGAAAAGGAGCGGT+CGG | - | chr1.4:83414106-83414125 | MS.gene73459:intron | 45.0% | |
| TTTCGATGAAGATCGGCGAA+GGG | + | chr1.4:83413915-83413934 | None:intergenic | 45.0% | |
| ! | AGCACGGATTTTCCTGCTAT+TGG | - | chr1.4:83414873-83414892 | MS.gene73459:intron | 45.0% |
| ! | TAATGGCGCCTGTTTGGTTT+GGG | - | chr1.4:83414622-83414641 | MS.gene73459:CDS | 45.0% |
| ! | TCAGTAATTTTCCCACCTCC+GGG | + | chr1.4:83414082-83414101 | None:intergenic | 45.0% |
| ! | TTCTCTGTGTTTGCTGGTGT+TGG | - | chr1.4:83415577-83415596 | MS.gene73459:intron | 45.0% |
| !! | ATTGGATTGTTTGGTGGTGC+TGG | - | chr1.4:83415403-83415422 | MS.gene73459:intron | 45.0% |
| !! | GAGAGTGGTGTCATTAAGCT+GGG | - | chr1.4:83415643-83415662 | MS.gene73459:intron | 45.0% |
| !! | TGAGAGTGGTGTCATTAAGC+TGG | - | chr1.4:83415642-83415661 | MS.gene73459:intron | 45.0% |
| !! | TGGTGCTGGTGTAGGAAAAA+CGG | - | chr1.4:83415417-83415436 | MS.gene73459:intron | 45.0% |
| !! | TTCGAGATTGGTGTTGGAAG+TGG | - | chr1.4:83414222-83414241 | MS.gene73459:CDS | 45.0% |
| AAGTCCAGTAAGACCGACAC+GGG | + | chr1.4:83415832-83415851 | None:intergenic | 50.0% | |
| ACCTGCTTGCACCATACCAA+AGG | - | chr1.4:83415371-83415390 | MS.gene73459:intron | 50.0% | |
| AGCAACGCGGTTTAAGAGGT+AGG | + | chr1.4:83413996-83414015 | None:intergenic | 50.0% | |
| AGTCAGCAACGCGGTTTAAG+AGG | + | chr1.4:83414000-83414019 | None:intergenic | 50.0% | |
| CAATCACTGCCTCAACATCG+AGG | - | chr1.4:83413939-83413958 | MS.gene73459:intron | 50.0% | |
| CATAAGGTGAAGCGCGAGAT+TGG | + | chr1.4:83413973-83413992 | None:intergenic | 50.0% | |
| CCTGCTTGCACCATACCAAA+GGG | - | chr1.4:83415372-83415391 | MS.gene73459:intron | 50.0% | |
| CTGCTTGCACCATACCAAAG+GGG | - | chr1.4:83415373-83415392 | MS.gene73459:intron | 50.0% | |
| GAGCATTTCCGTGATGCTGA+AGG | - | chr1.4:83415861-83415880 | MS.gene73459:CDS | 50.0% | |
| GGATGGAGAGTTCTCAACAC+TGG | - | chr1.4:83414310-83414329 | MS.gene73459:intron | 50.0% | |
| GGTGGTTTCTCTGTGTTTGC+TGG | - | chr1.4:83415571-83415590 | MS.gene73459:intron | 50.0% | |
| GTAATTGGCAGCAGCAAGCT+TGG | - | chr1.4:83416105-83416124 | MS.gene73459:CDS | 50.0% | |
| GTTGGAAGTGGCTCAGCATT+TGG | - | chr1.4:83414234-83414253 | MS.gene73459:CDS | 50.0% | |
| GTTGGAGAAAGAACCCGTGA+GGG | - | chr1.4:83415595-83415614 | MS.gene73459:intron | 50.0% | |
| GTTTCGATGAAGATCGGCGA+AGG | + | chr1.4:83413916-83413935 | None:intergenic | 50.0% | |
| TCAAGAGCAGTCAAGATCGG+AGG | + | chr1.4:83414187-83414206 | None:intergenic | 50.0% | |
| TCCGATCTTGACTGCTCTTG+AGG | - | chr1.4:83414186-83414205 | MS.gene73459:CDS | 50.0% | |
| TGTTGGAGAAAGAACCCGTG+AGG | - | chr1.4:83415594-83415613 | MS.gene73459:intron | 50.0% | |
| ! | CATTTAGGTTCCCGTTGGCA+GGG | - | chr1.4:83414991-83415010 | MS.gene73459:CDS | 50.0% |
| !! | CTGAAGGTGTTGTTCGTGGA+TGG | - | chr1.4:83414293-83414312 | MS.gene73459:intron | 50.0% |
| !! | GCTACTGAAGGTGTTGTTCG+TGG | - | chr1.4:83414289-83414308 | MS.gene73459:intron | 50.0% |
| !! | TTGTTTGGTGGTGCTGGTGT+AGG | - | chr1.4:83415409-83415428 | MS.gene73459:intron | 50.0% |
| CCCTTTGGTATGGTGCAAGC+AGG | + | chr1.4:83415375-83415394 | None:intergenic | 55.0% | |
| CGGTTGCATAGTCAGCAACG+CGG | + | chr1.4:83414009-83414028 | None:intergenic | 55.0% | |
| CTTGCACCATACCAAAGGGG+AGG | - | chr1.4:83415376-83415395 | MS.gene73459:intron | 55.0% | |
| GTGGCTCAGCATTTGGGTGA+AGG | - | chr1.4:83414241-83414260 | MS.gene73459:CDS | 55.0% | |
| ! | GCATTTAGGTTCCCGTTGGC+AGG | - | chr1.4:83414990-83415009 | MS.gene73459:CDS | 55.0% |
| !! | GGAGGTTAGCCTCGATGTTG+AGG | + | chr1.4:83413951-83413970 | None:intergenic | 55.0% |
| AAGAAGGAGGTTCCCGGAGG+TGG | - | chr1.4:83414067-83414086 | MS.gene73459:intron | 60.0% | |
| AGAAGGAGGTTCCCGGAGGT+GGG | - | chr1.4:83414068-83414087 | MS.gene73459:intron | 60.0% | |
| AGCGGTCGGCCAAGTTTGTC+AGG | - | chr1.4:83414120-83414139 | MS.gene73459:CDS | 60.0% | |
| AGGTGAAGCGCGAGATTGGG+AGG | + | chr1.4:83413969-83413988 | None:intergenic | 60.0% | |
| GGTCAGATGAATGAGCCCCC+TGG | - | chr1.4:83415798-83415817 | MS.gene73459:CDS | 60.0% | |
| TCCAAGGGTAGCCCTGCCAA+CGG | + | chr1.4:83415005-83415024 | None:intergenic | 60.0% | |
| CCAAGGGTAGCCCTGCCAAC+GGG | + | chr1.4:83415004-83415023 | None:intergenic | 65.0% | |
| CCGGCGAAGAAGGAGGTTCC+CGG | - | chr1.4:83414061-83414080 | MS.gene73459:intron | 65.0% | |
| CCGGGAACCTCCTTCTTCGC+CGG | + | chr1.4:83414064-83414083 | None:intergenic | 65.0% | |
| GCGAAGAAGGAGGTTCCCGG+AGG | - | chr1.4:83414064-83414083 | MS.gene73459:intron | 65.0% | |
| GGAACCTCCTTCTTCGCCGG+AGG | + | chr1.4:83414061-83414080 | None:intergenic | 65.0% | |
| ! | CGTGCCCGTGTCGGTCTTAC+TGG | - | chr1.4:83415825-83415844 | MS.gene73459:CDS | 65.0% |
| ! | TTCTTCGCCGGAGGCGCAGA+CGG | + | chr1.4:83414052-83414071 | None:intergenic | 65.0% |
| ACACGGGCACGAGCACCAGG+GGG | + | chr1.4:83415816-83415835 | None:intergenic | 70.0% | |
| ACCAGCTCCGTCTGCGCCTC+CGG | - | chr1.4:83414042-83414061 | MS.gene73459:intron | 70.0% | |
| AGGCGCAGACGGAGCTGGTG+CGG | + | chr1.4:83414041-83414060 | None:intergenic | 70.0% | |
| CCCGTTGGCAGGGCTACCCT+TGG | - | chr1.4:83415001-83415020 | MS.gene73459:CDS | 70.0% | |
| CCTGGTGCTCGTGCCCGTGT+CGG | - | chr1.4:83415816-83415835 | MS.gene73459:CDS | 70.0% | |
| CGACACGGGCACGAGCACCA+GGG | + | chr1.4:83415818-83415837 | None:intergenic | 70.0% | |
| GACACGGGCACGAGCACCAG+GGG | + | chr1.4:83415817-83415836 | None:intergenic | 70.0% | |
| GTCTGCGCCTCCGGCGAAGA+AGG | - | chr1.4:83414051-83414070 | MS.gene73459:intron | 70.0% | |
| TGCGCCTCCGGCGAAGAAGG+AGG | - | chr1.4:83414054-83414073 | MS.gene73459:intron | 70.0% | |
| AGACGGAGCTGGTGCGGCGG+CGG | + | chr1.4:83414035-83414054 | None:intergenic | 75.0% | |
| CCGACACGGGCACGAGCACC+AGG | + | chr1.4:83415819-83415838 | None:intergenic | 75.0% | |
| CGCAGACGGAGCTGGTGCGG+CGG | + | chr1.4:83414038-83414057 | None:intergenic | 75.0% | |
| ! | AGCTGGTGCGGCGGCGGCAG+CGG | + | chr1.4:83414029-83414048 | None:intergenic | 80.0% |
| !! | GCCGGAGGCGCAGACGGAGC+TGG | + | chr1.4:83414046-83414065 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 83413872 | 83416169 | 83413872 | ID=MS.gene73459 |
| chr1.4 | mRNA | 83413872 | 83416169 | 83413872 | ID=MS.gene73459.t1;Parent=MS.gene73459 |
| chr1.4 | exon | 83415696 | 83416169 | 83415696 | ID=MS.gene73459.t1.exon1;Parent=MS.gene73459.t1 |
| chr1.4 | CDS | 83415696 | 83416169 | 83415696 | ID=cds.MS.gene73459.t1;Parent=MS.gene73459.t1 |
| chr1.4 | exon | 83414968 | 83415043 | 83414968 | ID=MS.gene73459.t1.exon2;Parent=MS.gene73459.t1 |
| chr1.4 | CDS | 83414968 | 83415043 | 83414968 | ID=cds.MS.gene73459.t1;Parent=MS.gene73459.t1 |
| chr1.4 | exon | 83414773 | 83414861 | 83414773 | ID=MS.gene73459.t1.exon3;Parent=MS.gene73459.t1 |
| chr1.4 | CDS | 83414773 | 83414861 | 83414773 | ID=cds.MS.gene73459.t1;Parent=MS.gene73459.t1 |
| chr1.4 | exon | 83414560 | 83414677 | 83414560 | ID=MS.gene73459.t1.exon4;Parent=MS.gene73459.t1 |
| chr1.4 | CDS | 83414560 | 83414677 | 83414560 | ID=cds.MS.gene73459.t1;Parent=MS.gene73459.t1 |
| chr1.4 | exon | 83414366 | 83414469 | 83414366 | ID=MS.gene73459.t1.exon5;Parent=MS.gene73459.t1 |
| chr1.4 | CDS | 83414366 | 83414469 | 83414366 | ID=cds.MS.gene73459.t1;Parent=MS.gene73459.t1 |
| chr1.4 | exon | 83414112 | 83414270 | 83414112 | ID=MS.gene73459.t1.exon6;Parent=MS.gene73459.t1 |
| chr1.4 | CDS | 83414112 | 83414270 | 83414112 | ID=cds.MS.gene73459.t1;Parent=MS.gene73459.t1 |
| chr1.4 | exon | 83413872 | 83413925 | 83413872 | ID=MS.gene73459.t1.exon7;Parent=MS.gene73459.t1 |
| chr1.4 | CDS | 83413872 | 83413925 | 83413872 | ID=cds.MS.gene73459.t1;Parent=MS.gene73459.t1 |
| Gene Sequence |
| Protein sequence |
