Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73744.t1 | AES80607.2 | 98.5 | 324 | 5 | 0 | 1 | 324 | 72 | 395 | 3.70E-186 | 660.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73744.t1 | Q8LFD1 | 69.6 | 322 | 87 | 3 | 2 | 323 | 53 | 363 | 5.0e-131 | 468.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73744.t1 | G7KV76 | 98.5 | 324 | 5 | 0 | 1 | 324 | 72 | 395 | 2.7e-186 | 660.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050478 | MS.gene73744 | 0.825588 | 4.32E-54 | -1.69E-46 |
| MS.gene050546 | MS.gene73744 | 0.816726 | 4.77E-52 | -1.69E-46 |
| MS.gene050787 | MS.gene73744 | 0.822327 | 2.51E-53 | -1.69E-46 |
| MS.gene055356 | MS.gene73744 | 0.800762 | 1.24E-48 | -1.69E-46 |
| MS.gene055358 | MS.gene73744 | 0.828664 | 7.93E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73744.t1 | MTR_7g082670 | 98.457 | 324 | 5 | 0 | 1 | 324 | 25 | 348 | 0.0 | 667 |
| MS.gene73744.t1 | MTR_7g082670 | 98.457 | 324 | 5 | 0 | 1 | 324 | 72 | 395 | 0.0 | 667 |
| MS.gene73744.t1 | MTR_7g082670 | 98.457 | 324 | 5 | 0 | 1 | 324 | 49 | 372 | 0.0 | 666 |
| MS.gene73744.t1 | MTR_7g082670 | 98.457 | 324 | 5 | 0 | 1 | 324 | 19 | 342 | 0.0 | 665 |
| MS.gene73744.t1 | MTR_5g005730 | 85.802 | 324 | 44 | 1 | 1 | 324 | 3 | 324 | 0.0 | 564 |
| MS.gene73744.t1 | MTR_1g109430 | 70.175 | 285 | 77 | 1 | 7 | 291 | 26 | 302 | 3.90e-156 | 440 |
| MS.gene73744.t1 | MTR_1g109430 | 70.175 | 285 | 77 | 1 | 7 | 291 | 33 | 309 | 4.02e-156 | 440 |
| MS.gene73744.t1 | MTR_1g109430 | 72.201 | 259 | 72 | 0 | 7 | 265 | 26 | 284 | 5.46e-145 | 410 |
| MS.gene73744.t1 | MTR_1g109430 | 66.316 | 285 | 71 | 2 | 7 | 291 | 26 | 285 | 1.79e-142 | 405 |
| MS.gene73744.t1 | MTR_1g109400 | 66.090 | 289 | 97 | 1 | 2 | 289 | 3 | 291 | 1.54e-136 | 390 |
| MS.gene73744.t1 | MTR_1g109430 | 74.561 | 228 | 58 | 0 | 7 | 234 | 26 | 253 | 3.68e-132 | 377 |
| MS.gene73744.t1 | MTR_3g031780 | 55.674 | 282 | 124 | 1 | 11 | 291 | 4 | 285 | 4.25e-117 | 339 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73744.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene73744.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene73744.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene73744.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene73744.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene73744.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene73744.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene73744.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene73744.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene73744.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 3 | 313 | 2.71e-170 | 475 |
| MS.gene73744.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 22 | 332 | 1.01e-169 | 474 |
| MS.gene73744.t1 | AT3G02600 | 70.807 | 322 | 83 | 4 | 2 | 323 | 53 | 363 | 1.83e-169 | 475 |
| MS.gene73744.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 18 | 309 | 1.85e-146 | 415 |
| MS.gene73744.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 3 | 294 | 1.86e-146 | 414 |
| MS.gene73744.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 3 | 294 | 1.86e-146 | 414 |
| MS.gene73744.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 31 | 322 | 1.95e-146 | 416 |
| MS.gene73744.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 31 | 322 | 1.95e-146 | 416 |
| MS.gene73744.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 28 | 319 | 2.33e-146 | 415 |
| MS.gene73744.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 28 | 319 | 2.33e-146 | 415 |
| MS.gene73744.t1 | AT2G01180 | 64.626 | 294 | 100 | 3 | 2 | 293 | 28 | 319 | 2.33e-146 | 415 |
| MS.gene73744.t1 | AT1G15080 | 64.931 | 288 | 100 | 1 | 2 | 288 | 3 | 290 | 4.41e-137 | 390 |
| MS.gene73744.t1 | AT3G18220 | 55.705 | 298 | 131 | 1 | 2 | 298 | 3 | 300 | 4.07e-115 | 335 |
Find 73 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTGAGCTTCTGTTAAT+TGG | 0.145398 | 7.3:+25239200 | None:intergenic |
| GGGGTCCTTATGCTTATTTC+AGG | 0.182541 | 7.3:-25239291 | MS.gene73744:CDS |
| TATCACCGCCGTTACTAAAA+TGG | 0.288887 | 7.3:+25240547 | None:intergenic |
| CACTGGACGGACGTGTTTGC+TGG | 0.292931 | 7.3:-25239943 | MS.gene73744:CDS |
| GGGTTAACTTTAACAGGAAA+TGG | 0.302168 | 7.3:-25239142 | MS.gene73744:CDS |
| TGCATGGGGTTAACTTTAAC+AGG | 0.309244 | 7.3:-25239148 | MS.gene73744:CDS |
| GTGTTTGCTGGAGGTCTTAT+AGG | 0.312795 | 7.3:-25239931 | MS.gene73744:intron |
| CTACTTGCTGCATCACTTGT+TGG | 0.326071 | 7.3:-25239994 | MS.gene73744:CDS |
| TCATAGTGTGTGCGCCAAGC+TGG | 0.341574 | 7.3:+25241047 | None:intergenic |
| TTAGAAGATGATCTTGAATC+TGG | 0.345661 | 7.3:-25239103 | MS.gene73744:CDS |
| CAAGCTCCTAATGCTCAAAA+TGG | 0.345881 | 7.3:-25239241 | MS.gene73744:CDS |
| ATATATGCAGGGTCATTTGC+TGG | 0.361065 | 7.3:-25240108 | MS.gene73744:intron |
| TGATCTTCATCATGCTGTAT+TGG | 0.367907 | 7.3:-25240688 | MS.gene73744:CDS |
| AACTTGAGCTTCTGTTAATT+GGG | 0.374106 | 7.3:+25239201 | None:intergenic |
| GATCTTCATCATGCTGTATT+GGG | 0.375813 | 7.3:-25240687 | MS.gene73744:intron |
| GACCTCGACCAGACTTCTTC+TGG | 0.383443 | 7.3:-25240496 | MS.gene73744:CDS |
| CATGGTGACTTTGTCCCTCC+TGG | 0.390021 | 7.3:+25239173 | None:intergenic |
| AGAGTAATACAGTTCCTGTC+TGG | 0.394603 | 7.3:-25240874 | MS.gene73744:CDS |
| TATCCATTCTATCGCTTTGT+TGG | 0.395127 | 7.3:-25240932 | MS.gene73744:CDS |
| AATGCTACATACATGAAGTA+TGG | 0.396744 | 7.3:+25240275 | None:intergenic |
| CTAAAACACATATTCATGAT+TGG | 0.400977 | 7.3:-25241003 | MS.gene73744:CDS |
| TCATCTTCTAATGTTGAAGT+TGG | 0.410419 | 7.3:+25239115 | None:intergenic |
| AAATGGTAATCAAGCACAAT+TGG | 0.419067 | 7.3:-25239224 | MS.gene73744:CDS |
| GCAGGGTCATTTGCTGGTCT+AGG | 0.424510 | 7.3:-25240102 | MS.gene73744:intron |
| ATCCATTCTATCGCTTTGTT+GGG | 0.441748 | 7.3:-25240931 | MS.gene73744:CDS |
| CAAAGTCACCATGGGTGCAT+GGG | 0.441793 | 7.3:-25239163 | MS.gene73744:CDS |
| ATACATACATCCTTTCCATC+TGG | 0.450466 | 7.3:+25240464 | None:intergenic |
| GGTTAACTTTAACAGGAAAT+GGG | 0.459120 | 7.3:-25239141 | MS.gene73744:CDS |
| TTCCCAACAAAGCGATAGAA+TGG | 0.464974 | 7.3:+25240929 | None:intergenic |
| CATAGTGTGTGCGCCAAGCT+GGG | 0.465906 | 7.3:+25241048 | None:intergenic |
| TACATGAAGTATGGCCGCTT+GGG | 0.467697 | 7.3:+25240284 | None:intergenic |
| ACAAAGTCACCATGGGTGCA+TGG | 0.472421 | 7.3:-25239164 | MS.gene73744:CDS |
| GATCATAGATGTCTCTCCTT+CGG | 0.475629 | 7.3:+25240706 | None:intergenic |
| GGCATACCTTCATGATGATA+AGG | 0.477176 | 7.3:+25239751 | None:intergenic |
| CCTCCTCCTTATCATCATGA+AGG | 0.477395 | 7.3:-25239757 | MS.gene73744:intron |
| TTATGCTTATTTCAGGATGT+TGG | 0.479824 | 7.3:-25239284 | MS.gene73744:CDS |
| AAACATCGCCAGAAGAAGTC+TGG | 0.485111 | 7.3:+25240488 | None:intergenic |
| ATTCTATCGCTTTGTTGGGA+AGG | 0.490451 | 7.3:-25240927 | MS.gene73744:CDS |
| AACATCCTGAAATAAGCATA+AGG | 0.499943 | 7.3:+25239286 | None:intergenic |
| ATACATGAAGTATGGCCGCT+TGG | 0.512014 | 7.3:+25240283 | None:intergenic |
| AGAAGCTCAAGTTGAGAACC+AGG | 0.515071 | 7.3:-25239191 | MS.gene73744:CDS |
| AGGCAGATGGAAGCCCAGCT+TGG | 0.522915 | 7.3:-25241061 | None:intergenic |
| TTGATGACTACTGGCACCAC+TGG | 0.523537 | 7.3:-25239960 | MS.gene73744:CDS |
| TTCTTGTTATTTATATCCGA+AGG | 0.524237 | 7.3:-25240722 | MS.gene73744:CDS |
| TGGTGACGAGAGTGTCATAA+AGG | 0.524449 | 7.3:-25240323 | MS.gene73744:CDS |
| GAGTAATACAGTTCCTGTCT+GGG | 0.535025 | 7.3:-25240873 | MS.gene73744:CDS |
| TCTCTCGAGTTGATGACTAC+TGG | 0.560824 | 7.3:-25239969 | MS.gene73744:CDS |
| TAGAAGATGATCTTGAATCT+GGG | 0.561142 | 7.3:-25239102 | MS.gene73744:CDS |
| CGCCAGAAGAAGTCTGGTCG+AGG | 0.581407 | 7.3:+25240494 | None:intergenic |
| GATGCAATAAAAGATGCAGT+AGG | 0.581427 | 7.3:-25240521 | MS.gene73744:CDS |
| AAGTTAACCCCATGCACCCA+TGG | 0.581980 | 7.3:+25239155 | None:intergenic |
| CTTACAGGAACAGCCCAGAC+AGG | 0.583384 | 7.3:+25240860 | None:intergenic |
| TGACTACTGGCACCACTGGA+CGG | 0.584322 | 7.3:-25239956 | MS.gene73744:CDS |
| ATAACAAGAAAGATCACGAT+AGG | 0.584726 | 7.3:+25240735 | None:intergenic |
| GGAACTGTATTACTCTTCAG+TGG | 0.586540 | 7.3:+25240881 | None:intergenic |
| GCACACACTATGAGATCTCA+TGG | 0.591405 | 7.3:-25241037 | MS.gene73744:CDS |
| CAGCAAACACGTCCGTCCAG+TGG | 0.591682 | 7.3:+25239944 | None:intergenic |
| CTAAAAGCATTTGATCGCAA+AGG | 0.593115 | 7.3:-25240051 | MS.gene73744:CDS |
| CCTTCATGATGATAAGGAGG+AGG | 0.598516 | 7.3:+25239757 | None:intergenic |
| GACGAGAGTGTCATAAAGGA+AGG | 0.604424 | 7.3:-25240319 | MS.gene73744:CDS |
| TTGGGAGATGTCATTTGTCA+TGG | 0.606969 | 7.3:-25240343 | MS.gene73744:CDS |
| ACAAGTGATGCAGCAAGTAG+AGG | 0.607599 | 7.3:+25239997 | None:intergenic |
| ACATGATTTCAATAAATACA+AGG | 0.608273 | 7.3:+25240966 | None:intergenic |
| ATGCAATAAAAGATGCAGTA+GGG | 0.614450 | 7.3:-25240520 | MS.gene73744:CDS |
| AAAGTCACCATGGGTGCATG+GGG | 0.620064 | 7.3:-25239162 | MS.gene73744:CDS |
| TGGACGGACGTGTTTGCTGG+AGG | 0.637391 | 7.3:-25239940 | MS.gene73744:CDS |
| CAGGAGGGACAAAGTCACCA+TGG | 0.646229 | 7.3:-25239172 | MS.gene73744:CDS |
| AGGAGGGACAAAGTCACCAT+GGG | 0.651663 | 7.3:-25239171 | MS.gene73744:CDS |
| ATACCTTCATGATGATAAGG+AGG | 0.657232 | 7.3:+25239754 | None:intergenic |
| GCTCAAGTTGAGAACCAGGA+GGG | 0.662360 | 7.3:-25239187 | MS.gene73744:CDS |
| AGGATGTTGGAAGAAACTAG+AGG | 0.720006 | 7.3:-25239271 | MS.gene73744:CDS |
| AGCTCAAGTTGAGAACCAGG+AGG | 0.720823 | 7.3:-25239188 | MS.gene73744:CDS |
| GGACATAAGAGTTTCCCAAG+CGG | 0.755590 | 7.3:-25240298 | MS.gene73744:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATGTATTACATAATAA+TGG | - | chr7.3:25240629-25240648 | MS.gene73744:intron | 10.0% |
| !! | TATATGTATTACATAATAAT+GGG | - | chr7.3:25240630-25240649 | MS.gene73744:intron | 10.0% |
| !! | ATATGTATTACATAATAATG+GGG | - | chr7.3:25240631-25240650 | MS.gene73744:intron | 15.0% |
| !!! | AAAAGTAGTTTTTCTATTTT+TGG | + | chr7.3:25240291-25240310 | None:intergenic | 15.0% |
| !!! | TTTTAGGTTTATGATAAATT+GGG | - | chr7.3:25239787-25239806 | MS.gene73744:CDS | 15.0% |
| !!! | TTTTTAGGTTTATGATAAAT+TGG | - | chr7.3:25239786-25239805 | MS.gene73744:CDS | 15.0% |
| !! | AATTAAAAACCTAAAATTCG+AGG | + | chr7.3:25239711-25239730 | None:intergenic | 20.0% |
| !! | AATTCCAATTTATATATGCA+GGG | - | chr7.3:25240029-25240048 | MS.gene73744:CDS | 20.0% |
| !! | ACATGATTTCAATAAATACA+AGG | + | chr7.3:25239185-25239204 | None:intergenic | 20.0% |
| !! | AGAAATAAGAACTATAGATA+TGG | - | chr7.3:25240654-25240673 | MS.gene73744:intron | 20.0% |
| !! | GATAATATTGCATAATGTAT+TGG | - | chr7.3:25240430-25240449 | MS.gene73744:intron | 20.0% |
| !! | TTCATATTTGACATAATTCA+TGG | - | chr7.3:25240677-25240696 | MS.gene73744:intron | 20.0% |
| !!! | AAGAATTTATTTTCTGGTAT+AGG | - | chr7.3:25239567-25239586 | MS.gene73744:intron | 20.0% |
| !!! | ATTGTTAATGACTTCTTTTT+AGG | - | chr7.3:25239771-25239790 | MS.gene73744:CDS | 20.0% |
| ! | ATATTATCTACAACATCAGA+TGG | + | chr7.3:25240817-25240836 | None:intergenic | 25.0% |
| ! | CAATGTTAGAGTAATTATTC+AGG | + | chr7.3:25239355-25239374 | None:intergenic | 25.0% |
| ! | CAATTCCAATTTATATATGC+AGG | - | chr7.3:25240028-25240047 | MS.gene73744:CDS | 25.0% |
| ! | CAGAATTAAATTCATCAACT+TGG | + | chr7.3:25240767-25240786 | None:intergenic | 25.0% |
| ! | CTAAAACACATATTCATGAT+TGG | - | chr7.3:25239145-25239164 | MS.gene73744:CDS | 25.0% |
| ! | TAATTAAGTTTCACGAGAAA+TGG | - | chr7.3:25239936-25239955 | MS.gene73744:CDS | 25.0% |
| !! | AACATTGTCTTTTACTATCA+TGG | - | chr7.3:25239368-25239387 | MS.gene73744:intron | 25.0% |
| !! | AATATATTGTTATTCTCTGC+AGG | - | chr7.3:25240832-25240851 | MS.gene73744:intron | 25.0% |
| !! | TAGAAAAAAGGTGTATAATG+AGG | + | chr7.3:25240528-25240547 | None:intergenic | 25.0% |
| !! | TGTTTGTTTGATAGATTTTC+TGG | - | chr7.3:25239733-25239752 | MS.gene73744:intron | 25.0% |
| !! | TTTAATTCTGTTCTGAACTA+TGG | - | chr7.3:25240777-25240796 | MS.gene73744:intron | 25.0% |
| !! | TTTTTATCATTGTACTTAGC+TGG | - | chr7.3:25240070-25240089 | MS.gene73744:CDS | 25.0% |
| !!! | AAACTACTTTTAGTGTTTGT+TGG | - | chr7.3:25240300-25240319 | MS.gene73744:CDS | 25.0% |
| !!! | ATTATACACCTTTTTTCTAG+AGG | - | chr7.3:25240529-25240548 | MS.gene73744:CDS | 25.0% |
| !!! | CAACTTGGTAATTTTTTTAC+AGG | + | chr7.3:25240752-25240771 | None:intergenic | 25.0% |
| !!! | GATGACAAGAATTTATTTTC+TGG | - | chr7.3:25239561-25239580 | MS.gene73744:intron | 25.0% |
| !!! | TTCTTGTTATTTATATCCGA+AGG | - | chr7.3:25239426-25239445 | MS.gene73744:intron | 25.0% |
| AAATGGTAATCAAGCACAAT+TGG | - | chr7.3:25240924-25240943 | MS.gene73744:CDS | 30.0% | |
| AACATCCTGAAATAAGCATA+AGG | + | chr7.3:25240865-25240884 | None:intergenic | 30.0% | |
| AACTTGAGCTTCTGTTAATT+GGG | + | chr7.3:25240950-25240969 | None:intergenic | 30.0% | |
| AATGCTACATACATGAAGTA+TGG | + | chr7.3:25239876-25239895 | None:intergenic | 30.0% | |
| ACTAATTGAGATGCGATAAA+TGG | + | chr7.3:25240248-25240267 | None:intergenic | 30.0% | |
| ATAACAAGAAAGATCACGAT+AGG | + | chr7.3:25239416-25239435 | None:intergenic | 30.0% | |
| ATCTTAATCAGCAAACTTAC+AGG | + | chr7.3:25239306-25239325 | None:intergenic | 30.0% | |
| ATGACCCTGCATATATAAAT+TGG | + | chr7.3:25240036-25240055 | None:intergenic | 30.0% | |
| ATGCAATAAAAGATGCAGTA+GGG | - | chr7.3:25239628-25239647 | MS.gene73744:intron | 30.0% | |
| ATTACACTAAGTTATGAGCA+TGG | + | chr7.3:25239920-25239939 | None:intergenic | 30.0% | |
| ATTCTTGTCATCCACTTTAA+CGG | + | chr7.3:25239553-25239572 | None:intergenic | 30.0% | |
| ATTGCATACCTAGATACATA+CGG | - | chr7.3:25240581-25240600 | MS.gene73744:intron | 30.0% | |
| GGTTAACTTTAACAGGAAAT+GGG | - | chr7.3:25241007-25241026 | MS.gene73744:CDS | 30.0% | |
| TAGAAGATGATCTTGAATCT+GGG | - | chr7.3:25241046-25241065 | MS.gene73744:CDS | 30.0% | |
| TAGCATTTACTACTTATGAC+TGG | - | chr7.3:25239889-25239908 | MS.gene73744:intron | 30.0% | |
| TATGTATCTAGGTATGCAAT+TGG | + | chr7.3:25240581-25240600 | None:intergenic | 30.0% | |
| TATGTGAGATTTCTTCTTTC+AGG | - | chr7.3:25240331-25240350 | MS.gene73744:CDS | 30.0% | |
| TCATCTTCTAATGTTGAAGT+TGG | + | chr7.3:25241036-25241055 | None:intergenic | 30.0% | |
| TTAGAAGATGATCTTGAATC+TGG | - | chr7.3:25241045-25241064 | MS.gene73744:CDS | 30.0% | |
| TTATGCTTATTTCAGGATGT+TGG | - | chr7.3:25240864-25240883 | MS.gene73744:intron | 30.0% | |
| ! | ACAAACTCTATTTGCTAAAC+TGG | - | chr7.3:25239525-25239544 | MS.gene73744:intron | 30.0% |
| ! | GTATGTATTCCTCGAATTTT+AGG | - | chr7.3:25239699-25239718 | MS.gene73744:intron | 30.0% |
| ! | TGATTACCATTTTGAGCATT+AGG | + | chr7.3:25240916-25240935 | None:intergenic | 30.0% |
| !! | ACTGTTCTCCATTTTAGTAA+CGG | - | chr7.3:25239593-25239612 | MS.gene73744:intron | 30.0% |
| !! | TTGATAGATTTTCTGGTCAA+AGG | - | chr7.3:25239740-25239759 | MS.gene73744:intron | 30.0% |
| AAGGTGTATAATGAGGTGAA+AGG | + | chr7.3:25240521-25240540 | None:intergenic | 35.0% | |
| AGGTTCAAAGCAGATGTAAA+TGG | + | chr7.3:25240501-25240520 | None:intergenic | 35.0% | |
| ATACATACATCCTTTCCATC+TGG | + | chr7.3:25239687-25239706 | None:intergenic | 35.0% | |
| ATACCTTCATGATGATAAGG+AGG | + | chr7.3:25240397-25240416 | None:intergenic | 35.0% | |
| CAACTTGAGCTTCTGTTAAT+TGG | + | chr7.3:25240951-25240970 | None:intergenic | 35.0% | |
| GATCTTCATCATGCTGTATT+GGG | - | chr7.3:25239461-25239480 | MS.gene73744:intron | 35.0% | |
| GATGCAATAAAAGATGCAGT+AGG | - | chr7.3:25239627-25239646 | MS.gene73744:intron | 35.0% | |
| GCAATATTATCTAACTGCAG+AGG | + | chr7.3:25240421-25240440 | None:intergenic | 35.0% | |
| GGGTTAACTTTAACAGGAAA+TGG | - | chr7.3:25241006-25241025 | MS.gene73744:CDS | 35.0% | |
| TAAGTTTCACGAGAAATGGA+TGG | - | chr7.3:25239940-25239959 | MS.gene73744:CDS | 35.0% | |
| TATCCATTCTATCGCTTTGT+TGG | - | chr7.3:25239216-25239235 | MS.gene73744:CDS | 35.0% | |
| TGATCTTCATCATGCTGTAT+TGG | - | chr7.3:25239460-25239479 | MS.gene73744:intron | 35.0% | |
| TTGCATACCTAGATACATAC+GGG | - | chr7.3:25240582-25240601 | MS.gene73744:intron | 35.0% | |
| ! | AGCCAAAACCTCTAGAAAAA+AGG | + | chr7.3:25240540-25240559 | None:intergenic | 35.0% |
| ! | ATCCATTCTATCGCTTTGTT+GGG | - | chr7.3:25239217-25239236 | MS.gene73744:CDS | 35.0% |
| ! | ATTGTTATTCTCTGCAGGTT+GGG | - | chr7.3:25240837-25240856 | MS.gene73744:intron | 35.0% |
| ! | TATTGTTATTCTCTGCAGGT+TGG | - | chr7.3:25240836-25240855 | MS.gene73744:intron | 35.0% |
| !! | CTAAAAGCATTTGATCGCAA+AGG | - | chr7.3:25240097-25240116 | MS.gene73744:CDS | 35.0% |
| !!! | CACCTTTTTTCTAGAGGTTT+TGG | - | chr7.3:25240535-25240554 | MS.gene73744:CDS | 35.0% |
| AATGTCTCCCGTATGTATCT+AGG | + | chr7.3:25240592-25240611 | None:intergenic | 40.0% | |
| AGAGTAATACAGTTCCTGTC+TGG | - | chr7.3:25239274-25239293 | MS.gene73744:CDS | 40.0% | |
| AGGATGTTGGAAGAAACTAG+AGG | - | chr7.3:25240877-25240896 | MS.gene73744:CDS | 40.0% | |
| ATATATGCAGGGTCATTTGC+TGG | - | chr7.3:25240040-25240059 | MS.gene73744:CDS | 40.0% | |
| CAAGCTCCTAATGCTCAAAA+TGG | - | chr7.3:25240907-25240926 | MS.gene73744:CDS | 40.0% | |
| CTAAACTGGAACCGTTAAAG+TGG | - | chr7.3:25239539-25239558 | MS.gene73744:intron | 40.0% | |
| GAGTAATACAGTTCCTGTCT+GGG | - | chr7.3:25239275-25239294 | MS.gene73744:CDS | 40.0% | |
| GATCATAGATGTCTCTCCTT+CGG | + | chr7.3:25239445-25239464 | None:intergenic | 40.0% | |
| GGAACTGTATTACTCTTCAG+TGG | + | chr7.3:25239270-25239289 | None:intergenic | 40.0% | |
| GGCATACCTTCATGATGATA+AGG | + | chr7.3:25240400-25240419 | None:intergenic | 40.0% | |
| TATCACCGCCGTTACTAAAA+TGG | + | chr7.3:25239604-25239623 | None:intergenic | 40.0% | |
| TGCATGGGGTTAACTTTAAC+AGG | - | chr7.3:25241000-25241019 | MS.gene73744:CDS | 40.0% | |
| TTCCCAACAAAGCGATAGAA+TGG | + | chr7.3:25239222-25239241 | None:intergenic | 40.0% | |
| ! | ATTCTATCGCTTTGTTGGGA+AGG | - | chr7.3:25239221-25239240 | MS.gene73744:CDS | 40.0% |
| ! | TTGGGAGATGTCATTTGTCA+TGG | - | chr7.3:25239805-25239824 | MS.gene73744:intron | 40.0% |
| ! | TTGTTATTCTCTGCAGGTTG+GGG | - | chr7.3:25240838-25240857 | MS.gene73744:intron | 40.0% |
| !! | GTTCTCCATTTTAGTAACGG+CGG | - | chr7.3:25239596-25239615 | MS.gene73744:intron | 40.0% |
| AAACATCGCCAGAAGAAGTC+TGG | + | chr7.3:25239663-25239682 | None:intergenic | 45.0% | |
| ACAAGTGATGCAGCAAGTAG+AGG | + | chr7.3:25240154-25240173 | None:intergenic | 45.0% | |
| ATACATGAAGTATGGCCGCT+TGG | + | chr7.3:25239868-25239887 | None:intergenic | 45.0% | |
| CCTCCTCCTTATCATCATGA+AGG | - | chr7.3:25240391-25240410 | MS.gene73744:intron | 45.0% | |
| CCTTCATGATGATAAGGAGG+AGG | + | chr7.3:25240394-25240413 | None:intergenic | 45.0% | |
| GCACACACTATGAGATCTCA+TGG | - | chr7.3:25239111-25239130 | MS.gene73744:CDS | 45.0% | |
| GGACATAAGAGTTTCCCAAG+CGG | - | chr7.3:25239850-25239869 | MS.gene73744:intron | 45.0% | |
| GGGGTCCTTATGCTTATTTC+AGG | - | chr7.3:25240857-25240876 | MS.gene73744:intron | 45.0% | |
| TACATGAAGTATGGCCGCTT+GGG | + | chr7.3:25239867-25239886 | None:intergenic | 45.0% | |
| ! | CTACTTGCTGCATCACTTGT+TGG | - | chr7.3:25240154-25240173 | MS.gene73744:intron | 45.0% |
| ! | GCGATGTTTTCCAGATGGAA+AGG | - | chr7.3:25239674-25239693 | MS.gene73744:intron | 45.0% |
| ! | GTGTTTGCTGGAGGTCTTAT+AGG | - | chr7.3:25240217-25240236 | MS.gene73744:intron | 45.0% |
| ! | TTCTGGCGATGTTTTCCAGA+TGG | - | chr7.3:25239669-25239688 | MS.gene73744:intron | 45.0% |
| !! | AGAAGCTCAAGTTGAGAACC+AGG | - | chr7.3:25240957-25240976 | MS.gene73744:CDS | 45.0% |
| !! | GACGAGAGTGTCATAAAGGA+AGG | - | chr7.3:25239829-25239848 | MS.gene73744:intron | 45.0% |
| !! | TCTCTCGAGTTGATGACTAC+TGG | - | chr7.3:25240179-25240198 | MS.gene73744:intron | 45.0% |
| !! | TGGTGACGAGAGTGTCATAA+AGG | - | chr7.3:25239825-25239844 | MS.gene73744:intron | 45.0% |
| AAAGTCACCATGGGTGCATG+GGG | - | chr7.3:25240986-25241005 | MS.gene73744:CDS | 50.0% | |
| AAGTTAACCCCATGCACCCA+TGG | + | chr7.3:25240996-25241015 | None:intergenic | 50.0% | |
| ACAAAGTCACCATGGGTGCA+TGG | - | chr7.3:25240984-25241003 | MS.gene73744:CDS | 50.0% | |
| AGGAGGGACAAAGTCACCAT+GGG | - | chr7.3:25240977-25240996 | MS.gene73744:CDS | 50.0% | |
| CAAAGTCACCATGGGTGCAT+GGG | - | chr7.3:25240985-25241004 | MS.gene73744:CDS | 50.0% | |
| ! | TTGATGACTACTGGCACCAC+TGG | - | chr7.3:25240188-25240207 | MS.gene73744:intron | 50.0% |
| !! | AGCTCAAGTTGAGAACCAGG+AGG | - | chr7.3:25240960-25240979 | MS.gene73744:CDS | 50.0% |
| !! | GCTCAAGTTGAGAACCAGGA+GGG | - | chr7.3:25240961-25240980 | MS.gene73744:CDS | 50.0% |
| CAGGAGGGACAAAGTCACCA+TGG | - | chr7.3:25240976-25240995 | MS.gene73744:CDS | 55.0% | |
| CATAGTGTGTGCGCCAAGCT+GGG | + | chr7.3:25239103-25239122 | None:intergenic | 55.0% | |
| CATGGTGACTTTGTCCCTCC+TGG | + | chr7.3:25240978-25240997 | None:intergenic | 55.0% | |
| CTTACAGGAACAGCCCAGAC+AGG | + | chr7.3:25239291-25239310 | None:intergenic | 55.0% | |
| GACCTCGACCAGACTTCTTC+TGG | - | chr7.3:25239652-25239671 | MS.gene73744:intron | 55.0% | |
| TCATAGTGTGTGCGCCAAGC+TGG | + | chr7.3:25239104-25239123 | None:intergenic | 55.0% | |
| TGACTACTGGCACCACTGGA+CGG | - | chr7.3:25240192-25240211 | MS.gene73744:intron | 55.0% | |
| ! | GCAGGGTCATTTGCTGGTCT+AGG | - | chr7.3:25240046-25240065 | MS.gene73744:CDS | 55.0% |
| CACTGGACGGACGTGTTTGC+TGG | - | chr7.3:25240205-25240224 | MS.gene73744:intron | 60.0% | |
| CAGCAAACACGTCCGTCCAG+TGG | + | chr7.3:25240207-25240226 | None:intergenic | 60.0% | |
| CGCCAGAAGAAGTCTGGTCG+AGG | + | chr7.3:25239657-25239676 | None:intergenic | 60.0% | |
| ! | TGGACGGACGTGTTTGCTGG+AGG | - | chr7.3:25240208-25240227 | MS.gene73744:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 25239093 | 25241077 | 25239093 | ID=MS.gene73744 |
| chr7.3 | mRNA | 25239093 | 25241077 | 25239093 | ID=MS.gene73744.t1;Parent=MS.gene73744 |
| chr7.3 | exon | 25240865 | 25241077 | 25240865 | ID=MS.gene73744.t1.exon1;Parent=MS.gene73744.t1 |
| chr7.3 | CDS | 25240865 | 25241077 | 25240865 | ID=cds.MS.gene73744.t1;Parent=MS.gene73744.t1 |
| chr7.3 | exon | 25240688 | 25240775 | 25240688 | ID=MS.gene73744.t1.exon2;Parent=MS.gene73744.t1 |
| chr7.3 | CDS | 25240688 | 25240775 | 25240688 | ID=cds.MS.gene73744.t1;Parent=MS.gene73744.t1 |
| chr7.3 | exon | 25240472 | 25240581 | 25240472 | ID=MS.gene73744.t1.exon3;Parent=MS.gene73744.t1 |
| chr7.3 | CDS | 25240472 | 25240581 | 25240472 | ID=cds.MS.gene73744.t1;Parent=MS.gene73744.t1 |
| chr7.3 | exon | 25240287 | 25240377 | 25240287 | ID=MS.gene73744.t1.exon4;Parent=MS.gene73744.t1 |
| chr7.3 | CDS | 25240287 | 25240377 | 25240287 | ID=cds.MS.gene73744.t1;Parent=MS.gene73744.t1 |
| chr7.3 | exon | 25239932 | 25240120 | 25239932 | ID=MS.gene73744.t1.exon5;Parent=MS.gene73744.t1 |
| chr7.3 | CDS | 25239932 | 25240120 | 25239932 | ID=cds.MS.gene73744.t1;Parent=MS.gene73744.t1 |
| chr7.3 | exon | 25239758 | 25239817 | 25239758 | ID=MS.gene73744.t1.exon6;Parent=MS.gene73744.t1 |
| chr7.3 | CDS | 25239758 | 25239817 | 25239758 | ID=cds.MS.gene73744.t1;Parent=MS.gene73744.t1 |
| chr7.3 | exon | 25239093 | 25239316 | 25239093 | ID=MS.gene73744.t1.exon7;Parent=MS.gene73744.t1 |
| chr7.3 | CDS | 25239093 | 25239316 | 25239093 | ID=cds.MS.gene73744.t1;Parent=MS.gene73744.t1 |
| Gene Sequence |
| Protein sequence |
