Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050546.t1 | XP_024627033.1 | 99.2 | 396 | 3 | 0 | 25 | 420 | 22 | 417 | 4.30E-235 | 823.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050546.t1 | Q94A64 | 45.3 | 393 | 196 | 3 | 28 | 416 | 18 | 395 | 1.3e-94 | 348.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050546.t1 | A0A072U603 | 99.2 | 396 | 3 | 0 | 25 | 420 | 22 | 417 | 3.1e-235 | 823.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050478 | MS.gene050546 | 0.99636 | 1.52E-226 | -1.69E-46 |
| MS.gene050546 | MS.gene050959 | 0.802443 | 5.60E-49 | -1.69E-46 |
| MS.gene050546 | MS.gene055358 | 0.81419 | 1.75E-51 | -1.69E-46 |
| MS.gene050546 | MS.gene061333 | 0.806299 | 8.80E-50 | -1.69E-46 |
| MS.gene050546 | MS.gene061334 | 0.802388 | 5.74E-49 | -1.69E-46 |
| MS.gene050546 | MS.gene072558 | 0.80973 | 1.64E-50 | -1.69E-46 |
| MS.gene050546 | MS.gene08594 | 0.802507 | 5.43E-49 | -1.69E-46 |
| MS.gene050546 | MS.gene38054 | 0.804178 | 2.45E-49 | -1.69E-46 |
| MS.gene050546 | MS.gene55025 | 0.840593 | 7.92E-58 | -1.69E-46 |
| MS.gene050546 | MS.gene58375 | 0.800264 | 1.56E-48 | -1.69E-46 |
| MS.gene050546 | MS.gene62844 | 0.81167 | 6.23E-51 | -1.69E-46 |
| MS.gene050546 | MS.gene71887 | 0.804566 | 2.03E-49 | -1.69E-46 |
| MS.gene050546 | MS.gene72113 | 0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene050546 | MS.gene72141 | 0.830101 | 3.55E-55 | -1.69E-46 |
| MS.gene050546 | MS.gene73744 | 0.816726 | 4.77E-52 | -1.69E-46 |
| MS.gene050546 | MS.gene77453 | 0.807268 | 5.49E-50 | -1.69E-46 |
| MS.gene050546 | MS.gene81223 | 0.817375 | 3.41E-52 | -1.69E-46 |
| MS.gene050546 | MS.gene91807 | 0.814275 | 1.67E-51 | -1.69E-46 |
| MS.gene050546 | MS.gene91809 | 0.810532 | 1.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050546.t1 | MTR_7g115440 | 98.095 | 420 | 5 | 1 | 1 | 420 | 1 | 417 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050546.t1 | AT5G03970 | 45.293 | 393 | 196 | 3 | 28 | 416 | 18 | 395 | 2.59e-113 | 338 |
| MS.gene050546.t1 | AT5G03970 | 45.293 | 393 | 196 | 3 | 28 | 416 | 6 | 383 | 2.61e-113 | 338 |
Find 103 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAATGGTGTTATACTTTC+TGG | 0.144265 | 7.4:+2269576 | MS.gene050546:CDS |
| ACCCTAATTGTCGATAATTT+TGG | 0.145973 | 7.4:-2269398 | None:intergenic |
| ATGGTTATCGTCGCCCTTCT+TGG | 0.188068 | 7.4:+2269460 | MS.gene050546:CDS |
| GTATGGTCAGAGCAATAATT+TGG | 0.246919 | 7.4:+2270046 | MS.gene050546:CDS |
| TATAAAATGGAGCCATCTTT+TGG | 0.248092 | 7.4:-2269334 | None:intergenic |
| GGCCAAAATTATCGACAATT+AGG | 0.257532 | 7.4:+2269396 | MS.gene050546:CDS |
| GTCGAGGAGCTTCCATTTCT+TGG | 0.260659 | 7.4:+2270339 | MS.gene050546:CDS |
| AGCAGAAGTAGTTAATTATC+AGG | 0.265426 | 7.4:+2270316 | MS.gene050546:CDS |
| ATAATTTGGGTTTGGAGATA+TGG | 0.271191 | 7.4:+2270060 | MS.gene050546:CDS |
| TGCATCTGTGTTTATTAGAC+TGG | 0.271482 | 7.4:+2270256 | MS.gene050546:CDS |
| TGTGCACTGGCTTGCAATTT+GGG | 0.279405 | 7.4:+2269896 | MS.gene050546:CDS |
| TTGTGCACTGGCTTGCAATT+TGG | 0.292852 | 7.4:+2269895 | MS.gene050546:CDS |
| GAGACTTACTCGTCGAAAAC+TGG | 0.302961 | 7.4:+2269792 | MS.gene050546:CDS |
| AGGAAGAAGTGCATATAAAA+TGG | 0.312331 | 7.4:-2269347 | None:intergenic |
| GTCCTTGGGCGCAACGAAAA+AGG | 0.316276 | 7.4:-2269849 | None:intergenic |
| GCCAAAATTATCGACAATTA+GGG | 0.327462 | 7.4:+2269397 | MS.gene050546:CDS |
| CTATTTATGATCCGCGTCTT+GGG | 0.330993 | 7.4:+2269928 | MS.gene050546:CDS |
| TCGTCGTTATTTGACTCAAT+GGG | 0.341699 | 7.4:+2269374 | MS.gene050546:CDS |
| GGTGATGATTTGGTGCGTTC+TGG | 0.343927 | 7.4:+2269519 | MS.gene050546:CDS |
| TTCCTTACTTTCTGCCTGCT+TGG | 0.355140 | 7.4:+2270378 | MS.gene050546:CDS |
| GATTGAATTTCAAAGCAATA+TGG | 0.367493 | 7.4:+2270165 | MS.gene050546:CDS |
| ATCGTCGTTATTTGACTCAA+TGG | 0.368370 | 7.4:+2269373 | MS.gene050546:CDS |
| TTTGCTAGATTCCCAAGAAA+TGG | 0.375579 | 7.4:-2270351 | None:intergenic |
| GAGCACGAGGAATCTGTTCT+TGG | 0.385966 | 7.4:+2269999 | MS.gene050546:CDS |
| GCTATTTATGATCCGCGTCT+TGG | 0.388579 | 7.4:+2269927 | MS.gene050546:CDS |
| CAATCCTTGTTTCCAAAAGA+TGG | 0.389390 | 7.4:+2269322 | MS.gene050546:CDS |
| TAATTTGGGTTTGGAGATAT+GGG | 0.390227 | 7.4:+2270061 | MS.gene050546:CDS |
| TTATAAAACTGCTGAGGCTC+CGG | 0.390760 | 7.4:-2269657 | None:intergenic |
| TCGAGGAGCTTCCATTTCTT+GGG | 0.396105 | 7.4:+2270340 | MS.gene050546:CDS |
| AACACAGATGCAGAATTCTT+AGG | 0.399426 | 7.4:-2270245 | None:intergenic |
| TACTTTATGGATTCTTGTAA+TGG | 0.400842 | 7.4:+2269561 | MS.gene050546:CDS |
| ATTGATTTGAAGACAGTTGA+TGG | 0.405147 | 7.4:-2269303 | None:intergenic |
| TCAGAGCAATAATTTGGGTT+TGG | 0.405347 | 7.4:+2270052 | MS.gene050546:CDS |
| AGCACGAGGAATCTGTTCTT+GGG | 0.412726 | 7.4:+2270000 | MS.gene050546:CDS |
| ACTGTAGGTATGGTGGTTGC+AGG | 0.416741 | 7.4:+2269870 | MS.gene050546:CDS |
| TCATAAACATAGTAAGTCTT+GGG | 0.416985 | 7.4:-2269606 | None:intergenic |
| TGGGGATAGGAATGTAGCTT+TGG | 0.421868 | 7.4:+2269947 | MS.gene050546:CDS |
| ATTAACTACTTCTGCTGTCT+TGG | 0.425023 | 7.4:-2270309 | None:intergenic |
| TGGTTATCGTCGCCCTTCTT+GGG | 0.432486 | 7.4:+2269461 | MS.gene050546:CDS |
| TATGGTCAGAGCAATAATTT+GGG | 0.440444 | 7.4:+2270047 | MS.gene050546:CDS |
| ATCATAAACATAGTAAGTCT+TGG | 0.444219 | 7.4:-2269607 | None:intergenic |
| TTGAAATTCAATCTCCACCT+TGG | 0.456880 | 7.4:-2270155 | None:intergenic |
| TTGTAAAGAGGGTGATGATT+TGG | 0.458508 | 7.4:+2269509 | MS.gene050546:CDS |
| CAAGCAACGGTTTCAGCTCC+CGG | 0.464255 | 7.4:+2269638 | MS.gene050546:CDS |
| GTTCTTGGGGAATCGTCAGA+TGG | 0.470864 | 7.4:+2270014 | MS.gene050546:CDS |
| ATGATCCGCGTCTTGGGGAT+AGG | 0.473836 | 7.4:+2269934 | MS.gene050546:CDS |
| TTAAAATACAAGCTAAAGGT+TGG | 0.474334 | 7.4:-2270197 | None:intergenic |
| ACTCGTCGAAAACTGGGAAA+TGG | 0.475246 | 7.4:+2269799 | MS.gene050546:CDS |
| GAAATGTGAATCTAAGCTTA+AGG | 0.476235 | 7.4:+2269749 | MS.gene050546:CDS |
| CTGTGTTTATTAGACTGGGC+TGG | 0.476248 | 7.4:+2270261 | MS.gene050546:CDS |
| TATAAAACTGCTGAGGCTCC+GGG | 0.482495 | 7.4:-2269656 | None:intergenic |
| GATGAAGAGCGTGGCCAAGC+AGG | 0.483507 | 7.4:-2270392 | None:intergenic |
| GGCCAAGCAGGCAGAAAGTA+AGG | 0.488202 | 7.4:-2270380 | None:intergenic |
| CTCTTTAAAATACAAGCTAA+AGG | 0.488844 | 7.4:-2270201 | None:intergenic |
| ATGAGTACAGTTGCAGTAAG+TGG | 0.488957 | 7.4:-2270114 | None:intergenic |
| GCATCTGTGTTTATTAGACT+GGG | 0.489721 | 7.4:+2270257 | MS.gene050546:CDS |
| ACCACCATACCTACAGTCCT+TGG | 0.491320 | 7.4:-2269864 | None:intergenic |
| GTACTCATTTGAAGTACAGT+TGG | 0.495329 | 7.4:+2270129 | MS.gene050546:CDS |
| TGAAGTACAGTTGGATTCCA+AGG | 0.498144 | 7.4:+2270138 | MS.gene050546:CDS |
| TCAGATGGGCTATTGCAGTA+TGG | 0.501832 | 7.4:+2270029 | MS.gene050546:CDS |
| TGGTTGCAGGAGTTGTGCAC+TGG | 0.503026 | 7.4:+2269883 | MS.gene050546:CDS |
| GGAGATATGGGTTCTTGAGA+AGG | 0.509861 | 7.4:+2270073 | MS.gene050546:CDS |
| TGTAGCTTTGGTTAAACTAC+CGG | 0.513326 | 7.4:+2269959 | MS.gene050546:CDS |
| CCACCATACCTACAGTCCTT+GGG | 0.531479 | 7.4:-2269863 | None:intergenic |
| GCGCCCAAGGACTGTAGGTA+TGG | 0.533305 | 7.4:+2269860 | MS.gene050546:CDS |
| GGAAGTGCAGGCTCCCAAGA+AGG | 0.536019 | 7.4:-2269474 | None:intergenic |
| TAAGTGGATGGGTTAACTGC+TGG | 0.537298 | 7.4:-2270098 | None:intergenic |
| TTCTTGGGGAATCGTCAGAT+GGG | 0.539667 | 7.4:+2270015 | MS.gene050546:CDS |
| CTGTATGGCGTTGATTGTTG+AGG | 0.547845 | 7.4:+2269686 | MS.gene050546:CDS |
| ATCATCACCCTCTTTACAAG+TGG | 0.549387 | 7.4:-2269505 | None:intergenic |
| ATTGTTGAGGAATATCTTGA+GGG | 0.550549 | 7.4:+2269699 | MS.gene050546:CDS |
| AGTCAAATAACGACGATGAA+AGG | 0.555139 | 7.4:-2269367 | None:intergenic |
| TCGTTGCGCCCAAGGACTGT+AGG | 0.556674 | 7.4:+2269855 | MS.gene050546:CDS |
| GAAGTGCAGGCTCCCAAGAA+GGG | 0.557216 | 7.4:-2269473 | None:intergenic |
| TGAGGGTGATATTTGCTACA+AGG | 0.562104 | 7.4:+2269716 | MS.gene050546:CDS |
| GTAGTTAATTATCAGGGTCG+AGG | 0.570044 | 7.4:+2270323 | MS.gene050546:CDS |
| TATTTATGATCCGCGTCTTG+GGG | 0.570373 | 7.4:+2269929 | MS.gene050546:CDS |
| GTACAGTTGCAGTAAGTGGA+TGG | 0.578851 | 7.4:-2270110 | None:intergenic |
| AGACTTACTCGTCGAAAACT+GGG | 0.579920 | 7.4:+2269793 | MS.gene050546:CDS |
| TCCTGTGATAACACACCAGC+CGG | 0.581421 | 7.4:-2269978 | None:intergenic |
| ACCGGCTGGTGTGTTATCAC+AGG | 0.587539 | 7.4:+2269977 | MS.gene050546:CDS |
| TACAGTTGCAGTAAGTGGAT+GGG | 0.588665 | 7.4:-2270109 | None:intergenic |
| TAAGGAACGCAACACTGTAT+CGG | 0.591060 | 7.4:+2269767 | MS.gene050546:CDS |
| TATCTTGGAAGGCCTCGTGA+TGG | 0.594557 | 7.4:+2269441 | MS.gene050546:CDS |
| GCTTAGATTCACATTTCGCA+CGG | 0.603859 | 7.4:-2269743 | None:intergenic |
| GCAGAAGTAGTTAATTATCA+GGG | 0.606553 | 7.4:+2270317 | MS.gene050546:CDS |
| ATGATACGATGAGCAAGCAA+CGG | 0.616269 | 7.4:+2269625 | MS.gene050546:CDS |
| TTCTTGGGAATCTAGCAAAG+TGG | 0.617345 | 7.4:+2270355 | MS.gene050546:CDS |
| GCACGAGGAATCTGTTCTTG+GGG | 0.627375 | 7.4:+2270001 | MS.gene050546:CDS |
| GCTTTGGTTAAACTACCGGC+TGG | 0.627643 | 7.4:+2269963 | MS.gene050546:CDS |
| GATTGTTGAGGAATATCTTG+AGG | 0.634411 | 7.4:+2269698 | MS.gene050546:CDS |
| CCCAAGGACTGTAGGTATGG+TGG | 0.645289 | 7.4:+2269863 | MS.gene050546:CDS |
| CATAAACATAGTAAGTCTTG+GGG | 0.653786 | 7.4:-2269605 | None:intergenic |
| GTGCACTGGCTTGCAATTTG+GGG | 0.664054 | 7.4:+2269897 | MS.gene050546:CDS |
| TGTGTTATCACAGGAGCACG+AGG | 0.673702 | 7.4:+2269986 | MS.gene050546:CDS |
| TCTTGGTCTCCAAATCACAC+AGG | 0.674843 | 7.4:-2270292 | None:intergenic |
| CGTCGTTATTTGACTCAATG+GGG | 0.675122 | 7.4:+2269375 | MS.gene050546:CDS |
| CAAGACACGGATGAAGAGCG+TGG | 0.684621 | 7.4:-2270401 | None:intergenic |
| AGTACAGTTGGATTCCAAGG+TGG | 0.686110 | 7.4:+2270141 | MS.gene050546:CDS |
| TGTTCCATTCTATCAAGACA+CGG | 0.695008 | 7.4:-2270414 | None:intergenic |
| GATTTGAAGACAGTTGATGG+TGG | 0.707426 | 7.4:-2269300 | None:intergenic |
| ACATTCCTATCCCCAAGACG+CGG | 0.709272 | 7.4:-2269939 | None:intergenic |
| GGGCGACGATAACCATCACG+AGG | 0.740846 | 7.4:-2269453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATCATAAACATAGTAAGTCT+TGG | - | chr7.4:2269610-2269629 | None:intergenic | 25.0% |
| ! | GATTGAATTTCAAAGCAATA+TGG | + | chr7.4:2270165-2270184 | MS.gene050546:CDS | 25.0% |
| ! | TACTTTATGGATTCTTGTAA+TGG | + | chr7.4:2269561-2269580 | MS.gene050546:CDS | 25.0% |
| ! | TCATAAACATAGTAAGTCTT+GGG | - | chr7.4:2269609-2269628 | None:intergenic | 25.0% |
| ! | TTAAAATACAAGCTAAAGGT+TGG | - | chr7.4:2270200-2270219 | None:intergenic | 25.0% |
| !! | CAAAAAACTTGGTTACTTTA+TGG | + | chr7.4:2269548-2269567 | MS.gene050546:CDS | 25.0% |
| !! | GTTTTATAAAACTCTCTGTA+TGG | + | chr7.4:2269671-2269690 | MS.gene050546:CDS | 25.0% |
| !!! | CTCTTTAAAATACAAGCTAA+AGG | - | chr7.4:2270204-2270223 | None:intergenic | 25.0% |
| AGCAGAAGTAGTTAATTATC+AGG | + | chr7.4:2270316-2270335 | MS.gene050546:CDS | 30.0% | |
| ATTGTTGAGGAATATCTTGA+GGG | + | chr7.4:2269699-2269718 | MS.gene050546:CDS | 30.0% | |
| CATAAACATAGTAAGTCTTG+GGG | - | chr7.4:2269608-2269627 | None:intergenic | 30.0% | |
| GAAATGTGAATCTAAGCTTA+AGG | + | chr7.4:2269749-2269768 | MS.gene050546:CDS | 30.0% | |
| GCAGAAGTAGTTAATTATCA+GGG | + | chr7.4:2270317-2270336 | MS.gene050546:CDS | 30.0% | |
| GCCAAAATTATCGACAATTA+GGG | + | chr7.4:2269397-2269416 | MS.gene050546:CDS | 30.0% | |
| TATGGTCAGAGCAATAATTT+GGG | + | chr7.4:2270047-2270066 | MS.gene050546:CDS | 30.0% | |
| TCTTTACAAGTGGACAAAAA+CGG | - | chr7.4:2269498-2269517 | None:intergenic | 30.0% | |
| ! | ACCCTAATTGTCGATAATTT+TGG | - | chr7.4:2269401-2269420 | None:intergenic | 30.0% |
| ! | AGGAAGAAGTGCATATAAAA+TGG | - | chr7.4:2269350-2269369 | None:intergenic | 30.0% |
| ! | ATAATTTGGGTTTGGAGATA+TGG | + | chr7.4:2270060-2270079 | MS.gene050546:CDS | 30.0% |
| ! | GTATGCAACTTTTTGTATCT+TGG | + | chr7.4:2269426-2269445 | MS.gene050546:CDS | 30.0% |
| ! | TAATTTGGGTTTGGAGATAT+GGG | + | chr7.4:2270061-2270080 | MS.gene050546:CDS | 30.0% |
| ! | TATAAAATGGAGCCATCTTT+TGG | - | chr7.4:2269337-2269356 | None:intergenic | 30.0% |
| ! | TCTGGAATTCTCAAAAAACT+TGG | + | chr7.4:2269537-2269556 | MS.gene050546:CDS | 30.0% |
| ! | TTTTTGTCCACTTGTAAAGA+GGG | + | chr7.4:2269498-2269517 | MS.gene050546:CDS | 30.0% |
| !! | AGAGTTTTATAAAACTGCTG+AGG | - | chr7.4:2269666-2269685 | None:intergenic | 30.0% |
| !! | ATTGATTTGAAGACAGTTGA+TGG | - | chr7.4:2269306-2269325 | None:intergenic | 30.0% |
| !! | TGTAATGGTGTTATACTTTC+TGG | + | chr7.4:2269576-2269595 | MS.gene050546:CDS | 30.0% |
| AACACAGATGCAGAATTCTT+AGG | - | chr7.4:2270248-2270267 | None:intergenic | 35.0% | |
| AGTCAAATAACGACGATGAA+AGG | - | chr7.4:2269370-2269389 | None:intergenic | 35.0% | |
| ATCGTCGTTATTTGACTCAA+TGG | + | chr7.4:2269373-2269392 | MS.gene050546:CDS | 35.0% | |
| ATTAACTACTTCTGCTGTCT+TGG | - | chr7.4:2270312-2270331 | None:intergenic | 35.0% | |
| GATTGTTGAGGAATATCTTG+AGG | + | chr7.4:2269698-2269717 | MS.gene050546:CDS | 35.0% | |
| GCATCTGTGTTTATTAGACT+GGG | + | chr7.4:2270257-2270276 | MS.gene050546:CDS | 35.0% | |
| GGCCAAAATTATCGACAATT+AGG | + | chr7.4:2269396-2269415 | MS.gene050546:CDS | 35.0% | |
| GTATGGTCAGAGCAATAATT+TGG | + | chr7.4:2270046-2270065 | MS.gene050546:CDS | 35.0% | |
| TCGTCGTTATTTGACTCAAT+GGG | + | chr7.4:2269374-2269393 | MS.gene050546:CDS | 35.0% | |
| TGCATCTGTGTTTATTAGAC+TGG | + | chr7.4:2270256-2270275 | MS.gene050546:CDS | 35.0% | |
| TTGAAATTCAATCTCCACCT+TGG | - | chr7.4:2270158-2270177 | None:intergenic | 35.0% | |
| TTGTAAAGAGGGTGATGATT+TGG | + | chr7.4:2269509-2269528 | MS.gene050546:CDS | 35.0% | |
| TTTGCTAGATTCCCAAGAAA+TGG | - | chr7.4:2270354-2270373 | None:intergenic | 35.0% | |
| ! | CAATCCTTGTTTCCAAAAGA+TGG | + | chr7.4:2269322-2269341 | MS.gene050546:CDS | 35.0% |
| ! | GAACATTTTCCTGTGTGATT+TGG | + | chr7.4:2270283-2270302 | MS.gene050546:CDS | 35.0% |
| ! | GCAACTTTTTGTATCTTGGA+AGG | + | chr7.4:2269430-2269449 | MS.gene050546:CDS | 35.0% |
| ! | GTACTCATTTGAAGTACAGT+TGG | + | chr7.4:2270129-2270148 | MS.gene050546:CDS | 35.0% |
| ! | GTTTTTGTCCACTTGTAAAG+AGG | + | chr7.4:2269497-2269516 | MS.gene050546:CDS | 35.0% |
| ! | TCAGAGCAATAATTTGGGTT+TGG | + | chr7.4:2270052-2270071 | MS.gene050546:CDS | 35.0% |
| !! | TGTAGCTTTGGTTAAACTAC+CGG | + | chr7.4:2269959-2269978 | MS.gene050546:CDS | 35.0% |
| AGACTTACTCGTCGAAAACT+GGG | + | chr7.4:2269793-2269812 | MS.gene050546:CDS | 40.0% | |
| ATCATCACCCTCTTTACAAG+TGG | - | chr7.4:2269508-2269527 | None:intergenic | 40.0% | |
| ATGAGTACAGTTGCAGTAAG+TGG | - | chr7.4:2270117-2270136 | None:intergenic | 40.0% | |
| ATGATACGATGAGCAAGCAA+CGG | + | chr7.4:2269625-2269644 | MS.gene050546:CDS | 40.0% | |
| CGTCGTTATTTGACTCAATG+GGG | + | chr7.4:2269375-2269394 | MS.gene050546:CDS | 40.0% | |
| CTATTTATGATCCGCGTCTT+GGG | + | chr7.4:2269928-2269947 | MS.gene050546:CDS | 40.0% | |
| GCTTAGATTCACATTTCGCA+CGG | - | chr7.4:2269746-2269765 | None:intergenic | 40.0% | |
| GTAGTTAATTATCAGGGTCG+AGG | + | chr7.4:2270323-2270342 | MS.gene050546:CDS | 40.0% | |
| TAAGGAACGCAACACTGTAT+CGG | + | chr7.4:2269767-2269786 | MS.gene050546:CDS | 40.0% | |
| TACAGTTGCAGTAAGTGGAT+GGG | - | chr7.4:2270112-2270131 | None:intergenic | 40.0% | |
| TATTTATGATCCGCGTCTTG+GGG | + | chr7.4:2269929-2269948 | MS.gene050546:CDS | 40.0% | |
| TGAAGTACAGTTGGATTCCA+AGG | + | chr7.4:2270138-2270157 | MS.gene050546:CDS | 40.0% | |
| TTATAAAACTGCTGAGGCTC+CGG | - | chr7.4:2269660-2269679 | None:intergenic | 40.0% | |
| TTCTTGGGAATCTAGCAAAG+TGG | + | chr7.4:2270355-2270374 | MS.gene050546:CDS | 40.0% | |
| ! | TGAGGGTGATATTTGCTACA+AGG | + | chr7.4:2269716-2269735 | MS.gene050546:CDS | 40.0% |
| !! | GATTTGAAGACAGTTGATGG+TGG | - | chr7.4:2269303-2269322 | None:intergenic | 40.0% |
| ACTCGTCGAAAACTGGGAAA+TGG | + | chr7.4:2269799-2269818 | MS.gene050546:CDS | 45.0% | |
| AGCACGAGGAATCTGTTCTT+GGG | + | chr7.4:2270000-2270019 | MS.gene050546:CDS | 45.0% | |
| AGTACAGTTGGATTCCAAGG+TGG | + | chr7.4:2270141-2270160 | MS.gene050546:CDS | 45.0% | |
| CTGTGTTTATTAGACTGGGC+TGG | + | chr7.4:2270261-2270280 | MS.gene050546:CDS | 45.0% | |
| GAGACTTACTCGTCGAAAAC+TGG | + | chr7.4:2269792-2269811 | MS.gene050546:CDS | 45.0% | |
| GCTATTTATGATCCGCGTCT+TGG | + | chr7.4:2269927-2269946 | MS.gene050546:CDS | 45.0% | |
| GGAGATATGGGTTCTTGAGA+AGG | + | chr7.4:2270073-2270092 | MS.gene050546:CDS | 45.0% | |
| GTACAGTTGCAGTAAGTGGA+TGG | - | chr7.4:2270113-2270132 | None:intergenic | 45.0% | |
| TATAAAACTGCTGAGGCTCC+GGG | - | chr7.4:2269659-2269678 | None:intergenic | 45.0% | |
| TCGAGGAGCTTCCATTTCTT+GGG | + | chr7.4:2270340-2270359 | MS.gene050546:CDS | 45.0% | |
| TCTTGGTCTCCAAATCACAC+AGG | - | chr7.4:2270295-2270314 | None:intergenic | 45.0% | |
| TGGGGATAGGAATGTAGCTT+TGG | + | chr7.4:2269947-2269966 | MS.gene050546:CDS | 45.0% | |
| TTCCTTACTTTCTGCCTGCT+TGG | + | chr7.4:2270378-2270397 | MS.gene050546:CDS | 45.0% | |
| TTCTTGGGGAATCGTCAGAT+GGG | + | chr7.4:2270015-2270034 | MS.gene050546:CDS | 45.0% | |
| !! | CTGTATGGCGTTGATTGTTG+AGG | + | chr7.4:2269686-2269705 | MS.gene050546:CDS | 45.0% |
| !! | GGAGCCATCTTTTGGAAACA+AGG | - | chr7.4:2269329-2269348 | None:intergenic | 45.0% |
| !! | TAAGTGGATGGGTTAACTGC+TGG | - | chr7.4:2270101-2270120 | None:intergenic | 45.0% |
| !! | TCAGATGGGCTATTGCAGTA+TGG | + | chr7.4:2270029-2270048 | MS.gene050546:CDS | 45.0% |
| !! | TGTGCACTGGCTTGCAATTT+GGG | + | chr7.4:2269896-2269915 | MS.gene050546:CDS | 45.0% |
| !! | TTGTGCACTGGCTTGCAATT+TGG | + | chr7.4:2269895-2269914 | MS.gene050546:CDS | 45.0% |
| ACATTCCTATCCCCAAGACG+CGG | - | chr7.4:2269942-2269961 | None:intergenic | 50.0% | |
| ACCACCATACCTACAGTCCT+TGG | - | chr7.4:2269867-2269886 | None:intergenic | 50.0% | |
| ACTGTAGGTATGGTGGTTGC+AGG | + | chr7.4:2269870-2269889 | MS.gene050546:CDS | 50.0% | |
| ATGGTTATCGTCGCCCTTCT+TGG | + | chr7.4:2269460-2269479 | MS.gene050546:CDS | 50.0% | |
| CCACCATACCTACAGTCCTT+GGG | - | chr7.4:2269866-2269885 | None:intergenic | 50.0% | |
| GAGCACGAGGAATCTGTTCT+TGG | + | chr7.4:2269999-2270018 | MS.gene050546:CDS | 50.0% | |
| GCACGAGGAATCTGTTCTTG+GGG | + | chr7.4:2270001-2270020 | MS.gene050546:CDS | 50.0% | |
| GCTTTGGTTAAACTACCGGC+TGG | + | chr7.4:2269963-2269982 | MS.gene050546:CDS | 50.0% | |
| GTCGAGGAGCTTCCATTTCT+TGG | + | chr7.4:2270339-2270358 | MS.gene050546:CDS | 50.0% | |
| GTTCTTGGGGAATCGTCAGA+TGG | + | chr7.4:2270014-2270033 | MS.gene050546:CDS | 50.0% | |
| TATCTTGGAAGGCCTCGTGA+TGG | + | chr7.4:2269441-2269460 | MS.gene050546:CDS | 50.0% | |
| TCCTGTGATAACACACCAGC+CGG | - | chr7.4:2269981-2270000 | None:intergenic | 50.0% | |
| TGGTTATCGTCGCCCTTCTT+GGG | + | chr7.4:2269461-2269480 | MS.gene050546:CDS | 50.0% | |
| ! | GTGGACAAAAACGGAAGTGC+AGG | - | chr7.4:2269489-2269508 | None:intergenic | 50.0% |
| ! | TGTGTTATCACAGGAGCACG+AGG | + | chr7.4:2269986-2270005 | MS.gene050546:CDS | 50.0% |
| !! | GGTGATGATTTGGTGCGTTC+TGG | + | chr7.4:2269519-2269538 | MS.gene050546:CDS | 50.0% |
| !! | GTGCACTGGCTTGCAATTTG+GGG | + | chr7.4:2269897-2269916 | MS.gene050546:CDS | 50.0% |
| ACCGGCTGGTGTGTTATCAC+AGG | + | chr7.4:2269977-2269996 | MS.gene050546:CDS | 55.0% | |
| ATGATCCGCGTCTTGGGGAT+AGG | + | chr7.4:2269934-2269953 | MS.gene050546:CDS | 55.0% | |
| CAAGACACGGATGAAGAGCG+TGG | - | chr7.4:2270404-2270423 | None:intergenic | 55.0% | |
| CAAGCAACGGTTTCAGCTCC+CGG | + | chr7.4:2269638-2269657 | MS.gene050546:CDS | 55.0% | |
| CCCAAGGACTGTAGGTATGG+TGG | + | chr7.4:2269863-2269882 | MS.gene050546:CDS | 55.0% | |
| GAAGTGCAGGCTCCCAAGAA+GGG | - | chr7.4:2269476-2269495 | None:intergenic | 55.0% | |
| GGCCAAGCAGGCAGAAAGTA+AGG | - | chr7.4:2270383-2270402 | None:intergenic | 55.0% | |
| GTCCTTGGGCGCAACGAAAA+AGG | - | chr7.4:2269852-2269871 | None:intergenic | 55.0% | |
| TGGTTGCAGGAGTTGTGCAC+TGG | + | chr7.4:2269883-2269902 | MS.gene050546:CDS | 55.0% | |
| !! | CACCTTTTTCGTTGCGCCCA+AGG | + | chr7.4:2269847-2269866 | MS.gene050546:CDS | 55.0% |
| GCGCCCAAGGACTGTAGGTA+TGG | + | chr7.4:2269860-2269879 | MS.gene050546:CDS | 60.0% | |
| GGGCGACGATAACCATCACG+AGG | - | chr7.4:2269456-2269475 | None:intergenic | 60.0% | |
| TCGTTGCGCCCAAGGACTGT+AGG | + | chr7.4:2269855-2269874 | MS.gene050546:CDS | 60.0% | |
| ! | GATGAAGAGCGTGGCCAAGC+AGG | - | chr7.4:2270395-2270414 | None:intergenic | 60.0% |
| ! | GGAAGTGCAGGCTCCCAAGA+AGG | - | chr7.4:2269477-2269496 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 2269162 | 2270424 | 2269162 | ID=MS.gene050546 |
| chr7.4 | mRNA | 2269162 | 2270424 | 2269162 | ID=MS.gene050546.t1;Parent=MS.gene050546 |
| chr7.4 | exon | 2269162 | 2270424 | 2269162 | ID=MS.gene050546.t1.exon1;Parent=MS.gene050546.t1 |
| chr7.4 | CDS | 2269162 | 2270424 | 2269162 | ID=cds.MS.gene050546.t1;Parent=MS.gene050546.t1 |
| Gene Sequence |
| Protein sequence |
