Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050478.t1 | XP_024627033.1 | 99.2 | 396 | 3 | 0 | 25 | 420 | 22 | 417 | 4.30E-235 | 823.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050478.t1 | Q94A64 | 45.3 | 393 | 196 | 3 | 28 | 416 | 18 | 395 | 1.3e-94 | 348.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050478.t1 | A0A072U603 | 99.2 | 396 | 3 | 0 | 25 | 420 | 22 | 417 | 3.1e-235 | 823.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050478 | MS.gene050546 | 0.99636 | 1.52E-226 | -1.69E-46 |
| MS.gene050478 | MS.gene050959 | 0.807629 | 4.60E-50 | -1.69E-46 |
| MS.gene050478 | MS.gene055358 | 0.820787 | 5.70E-53 | -1.69E-46 |
| MS.gene050478 | MS.gene061333 | 0.811886 | 5.59E-51 | -1.69E-46 |
| MS.gene050478 | MS.gene061334 | 0.808931 | 2.43E-50 | -1.69E-46 |
| MS.gene050478 | MS.gene063197 | 0.806405 | 8.36E-50 | -1.69E-46 |
| MS.gene050478 | MS.gene072558 | 0.815696 | 8.10E-52 | -1.69E-46 |
| MS.gene050478 | MS.gene38054 | 0.809001 | 2.35E-50 | -1.69E-46 |
| MS.gene050478 | MS.gene44921 | 0.811067 | 8.43E-51 | -1.69E-46 |
| MS.gene050478 | MS.gene55025 | 0.849208 | 3.75E-60 | -1.69E-46 |
| MS.gene050478 | MS.gene58375 | 0.812338 | 4.46E-51 | -1.69E-46 |
| MS.gene050478 | MS.gene62844 | 0.810416 | 1.17E-50 | -1.69E-46 |
| MS.gene050478 | MS.gene71887 | 0.804287 | 2.32E-49 | -1.69E-46 |
| MS.gene050478 | MS.gene72113 | 0.803681 | 3.10E-49 | -1.69E-46 |
| MS.gene050478 | MS.gene72141 | 0.831415 | 1.69E-55 | -1.69E-46 |
| MS.gene050478 | MS.gene73744 | 0.825588 | 4.32E-54 | -1.69E-46 |
| MS.gene050478 | MS.gene77453 | 0.803214 | 3.88E-49 | -1.69E-46 |
| MS.gene050478 | MS.gene81223 | 0.823471 | 1.36E-53 | -1.69E-46 |
| MS.gene050478 | MS.gene91807 | 0.819435 | 1.16E-52 | -1.69E-46 |
| MS.gene050478 | MS.gene91809 | 0.815919 | 7.22E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050478.t1 | MTR_7g115440 | 98.095 | 420 | 5 | 1 | 1 | 420 | 1 | 417 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050478.t1 | AT5G03970 | 45.293 | 393 | 196 | 3 | 28 | 416 | 18 | 395 | 2.59e-113 | 338 |
| MS.gene050478.t1 | AT5G03970 | 45.293 | 393 | 196 | 3 | 28 | 416 | 6 | 383 | 2.61e-113 | 338 |
Find 103 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAATGGTGTTATACTTTC+TGG | 0.144265 | 7.3:+2127857 | MS.gene050478:CDS |
| ACCCTAATTGTCGATAATTT+TGG | 0.145973 | 7.3:-2127679 | None:intergenic |
| ATGGTTATCGTCGCCCTTCT+TGG | 0.188068 | 7.3:+2127741 | MS.gene050478:CDS |
| GTATGGTCAGAGCAATAATT+TGG | 0.246919 | 7.3:+2128327 | MS.gene050478:CDS |
| TATAAAATGGAGCCATCTTT+TGG | 0.248092 | 7.3:-2127615 | None:intergenic |
| GGCCAAAATTATCGACAATT+AGG | 0.257532 | 7.3:+2127677 | MS.gene050478:CDS |
| GTCGAGGAGCTTCCATTTCT+TGG | 0.260659 | 7.3:+2128620 | MS.gene050478:CDS |
| AGCAGAAGTAGTTAATTATC+AGG | 0.265426 | 7.3:+2128597 | MS.gene050478:CDS |
| ATAATTTGGGTTTGGAGATA+TGG | 0.271191 | 7.3:+2128341 | MS.gene050478:CDS |
| TGCATCTGTGTTTATTAGAC+TGG | 0.271482 | 7.3:+2128537 | MS.gene050478:CDS |
| TGTGCACTGGCTTGCAATTT+GGG | 0.279405 | 7.3:+2128177 | MS.gene050478:CDS |
| TTGTGCACTGGCTTGCAATT+TGG | 0.292852 | 7.3:+2128176 | MS.gene050478:CDS |
| GAGACTTACTCGTCGAAAAC+TGG | 0.302961 | 7.3:+2128073 | MS.gene050478:CDS |
| AGGAAGAAGTGCATATAAAA+TGG | 0.312331 | 7.3:-2127628 | None:intergenic |
| GTCCTTGGGCGCAACGAAAA+AGG | 0.316276 | 7.3:-2128130 | None:intergenic |
| GCCAAAATTATCGACAATTA+GGG | 0.327462 | 7.3:+2127678 | MS.gene050478:CDS |
| CTATTTATGATCCGCGTCTT+GGG | 0.330993 | 7.3:+2128209 | MS.gene050478:CDS |
| TCGTCGTTATTTGACTCAAT+GGG | 0.341699 | 7.3:+2127655 | MS.gene050478:CDS |
| GGTGATGATTTGGTGCGTTC+TGG | 0.343927 | 7.3:+2127800 | MS.gene050478:CDS |
| TTCCTTACTTTCTGCCTGCT+TGG | 0.355140 | 7.3:+2128659 | MS.gene050478:CDS |
| GATTGAATTTCAAAGCAATA+TGG | 0.367493 | 7.3:+2128446 | MS.gene050478:CDS |
| ATCGTCGTTATTTGACTCAA+TGG | 0.368370 | 7.3:+2127654 | MS.gene050478:CDS |
| TTTGCTAGATTCCCAAGAAA+TGG | 0.375579 | 7.3:-2128632 | None:intergenic |
| GAGCACGAGGAATCTGTTCT+TGG | 0.385966 | 7.3:+2128280 | MS.gene050478:CDS |
| GCTATTTATGATCCGCGTCT+TGG | 0.388579 | 7.3:+2128208 | MS.gene050478:CDS |
| CAATCCTTGTTTCCAAAAGA+TGG | 0.389390 | 7.3:+2127603 | MS.gene050478:CDS |
| TAATTTGGGTTTGGAGATAT+GGG | 0.390227 | 7.3:+2128342 | MS.gene050478:CDS |
| TTATAAAACTGCTGAGGCTC+CGG | 0.390760 | 7.3:-2127938 | None:intergenic |
| TCGAGGAGCTTCCATTTCTT+GGG | 0.396105 | 7.3:+2128621 | MS.gene050478:CDS |
| AACACAGATGCAGAATTCTT+AGG | 0.399426 | 7.3:-2128526 | None:intergenic |
| TACTTTATGGATTCTTGTAA+TGG | 0.400842 | 7.3:+2127842 | MS.gene050478:CDS |
| ATTGATTTGAAGACAGTTGA+TGG | 0.405147 | 7.3:-2127584 | None:intergenic |
| TCAGAGCAATAATTTGGGTT+TGG | 0.405347 | 7.3:+2128333 | MS.gene050478:CDS |
| AGCACGAGGAATCTGTTCTT+GGG | 0.412726 | 7.3:+2128281 | MS.gene050478:CDS |
| ACTGTAGGTATGGTGGTTGC+AGG | 0.416741 | 7.3:+2128151 | MS.gene050478:CDS |
| TCATAAACATAGTAAGTCTT+GGG | 0.416985 | 7.3:-2127887 | None:intergenic |
| TGGGGATAGGAATGTAGCTT+TGG | 0.421868 | 7.3:+2128228 | MS.gene050478:CDS |
| ATTAACTACTTCTGCTGTCT+TGG | 0.425023 | 7.3:-2128590 | None:intergenic |
| TGGTTATCGTCGCCCTTCTT+GGG | 0.432486 | 7.3:+2127742 | MS.gene050478:CDS |
| TATGGTCAGAGCAATAATTT+GGG | 0.440444 | 7.3:+2128328 | MS.gene050478:CDS |
| ATCATAAACATAGTAAGTCT+TGG | 0.444219 | 7.3:-2127888 | None:intergenic |
| TTGAAATTCAATCTCCACCT+TGG | 0.456880 | 7.3:-2128436 | None:intergenic |
| TTGTAAAGAGGGTGATGATT+TGG | 0.458508 | 7.3:+2127790 | MS.gene050478:CDS |
| CAAGCAACGGTTTCAGCTCC+CGG | 0.464255 | 7.3:+2127919 | MS.gene050478:CDS |
| GTTCTTGGGGAATCGTCAGA+TGG | 0.470864 | 7.3:+2128295 | MS.gene050478:CDS |
| ATGATCCGCGTCTTGGGGAT+AGG | 0.473836 | 7.3:+2128215 | MS.gene050478:CDS |
| TTAAAATACAAGCTAAAGGT+TGG | 0.474334 | 7.3:-2128478 | None:intergenic |
| ACTCGTCGAAAACTGGGAAA+TGG | 0.475246 | 7.3:+2128080 | MS.gene050478:CDS |
| GAAATGTGAATCTAAGCTTA+AGG | 0.476235 | 7.3:+2128030 | MS.gene050478:CDS |
| CTGTGTTTATTAGACTGGGC+TGG | 0.476248 | 7.3:+2128542 | MS.gene050478:CDS |
| TATAAAACTGCTGAGGCTCC+GGG | 0.482495 | 7.3:-2127937 | None:intergenic |
| GATGAAGAGCGTGGCCAAGC+AGG | 0.483507 | 7.3:-2128673 | None:intergenic |
| GGCCAAGCAGGCAGAAAGTA+AGG | 0.488202 | 7.3:-2128661 | None:intergenic |
| CTCTTTAAAATACAAGCTAA+AGG | 0.488844 | 7.3:-2128482 | None:intergenic |
| ATGAGTACAGTTGCAGTAAG+TGG | 0.488957 | 7.3:-2128395 | None:intergenic |
| GCATCTGTGTTTATTAGACT+GGG | 0.489721 | 7.3:+2128538 | MS.gene050478:CDS |
| ACCACCATACCTACAGTCCT+TGG | 0.491320 | 7.3:-2128145 | None:intergenic |
| GTACTCATTTGAAGTACAGT+TGG | 0.495329 | 7.3:+2128410 | MS.gene050478:CDS |
| TGAAGTACAGTTGGATTCCA+AGG | 0.498144 | 7.3:+2128419 | MS.gene050478:CDS |
| TCAGATGGGCTATTGCAGTA+TGG | 0.501832 | 7.3:+2128310 | MS.gene050478:CDS |
| TGGTTGCAGGAGTTGTGCAC+TGG | 0.503026 | 7.3:+2128164 | MS.gene050478:CDS |
| GGAGATATGGGTTCTTGAGA+AGG | 0.509861 | 7.3:+2128354 | MS.gene050478:CDS |
| TGTAGCTTTGGTTAAACTAC+CGG | 0.513326 | 7.3:+2128240 | MS.gene050478:CDS |
| CCACCATACCTACAGTCCTT+GGG | 0.531479 | 7.3:-2128144 | None:intergenic |
| GCGCCCAAGGACTGTAGGTA+TGG | 0.533305 | 7.3:+2128141 | MS.gene050478:CDS |
| GGAAGTGCAGGCTCCCAAGA+AGG | 0.536019 | 7.3:-2127755 | None:intergenic |
| TAAGTGGATGGGTTAACTGC+TGG | 0.537298 | 7.3:-2128379 | None:intergenic |
| TTCTTGGGGAATCGTCAGAT+GGG | 0.539667 | 7.3:+2128296 | MS.gene050478:CDS |
| CTGTATGGCGTTGATTGTTG+AGG | 0.547845 | 7.3:+2127967 | MS.gene050478:CDS |
| ATCATCACCCTCTTTACAAG+TGG | 0.549387 | 7.3:-2127786 | None:intergenic |
| ATTGTTGAGGAATATCTTGA+GGG | 0.550549 | 7.3:+2127980 | MS.gene050478:CDS |
| AGTCAAATAACGACGATGAA+AGG | 0.555139 | 7.3:-2127648 | None:intergenic |
| TCGTTGCGCCCAAGGACTGT+AGG | 0.556674 | 7.3:+2128136 | MS.gene050478:CDS |
| GAAGTGCAGGCTCCCAAGAA+GGG | 0.557216 | 7.3:-2127754 | None:intergenic |
| TGAGGGTGATATTTGCTACA+AGG | 0.562104 | 7.3:+2127997 | MS.gene050478:CDS |
| GTAGTTAATTATCAGGGTCG+AGG | 0.570044 | 7.3:+2128604 | MS.gene050478:CDS |
| TATTTATGATCCGCGTCTTG+GGG | 0.570373 | 7.3:+2128210 | MS.gene050478:CDS |
| GTACAGTTGCAGTAAGTGGA+TGG | 0.578851 | 7.3:-2128391 | None:intergenic |
| AGACTTACTCGTCGAAAACT+GGG | 0.579920 | 7.3:+2128074 | MS.gene050478:CDS |
| TCCTGTGATAACACACCAGC+CGG | 0.581421 | 7.3:-2128259 | None:intergenic |
| ACCGGCTGGTGTGTTATCAC+AGG | 0.587539 | 7.3:+2128258 | MS.gene050478:CDS |
| TACAGTTGCAGTAAGTGGAT+GGG | 0.588665 | 7.3:-2128390 | None:intergenic |
| TAAGGAACGCAACACTGTAT+CGG | 0.591060 | 7.3:+2128048 | MS.gene050478:CDS |
| TATCTTGGAAGGCCTCGTGA+TGG | 0.594557 | 7.3:+2127722 | MS.gene050478:CDS |
| GCTTAGATTCACATTTCGCA+CGG | 0.603859 | 7.3:-2128024 | None:intergenic |
| GCAGAAGTAGTTAATTATCA+GGG | 0.606553 | 7.3:+2128598 | MS.gene050478:CDS |
| ATGATACGATGAGCAAGCAA+CGG | 0.616269 | 7.3:+2127906 | MS.gene050478:CDS |
| TTCTTGGGAATCTAGCAAAG+TGG | 0.617345 | 7.3:+2128636 | MS.gene050478:CDS |
| GCACGAGGAATCTGTTCTTG+GGG | 0.627375 | 7.3:+2128282 | MS.gene050478:CDS |
| GCTTTGGTTAAACTACCGGC+TGG | 0.627643 | 7.3:+2128244 | MS.gene050478:CDS |
| GATTGTTGAGGAATATCTTG+AGG | 0.634411 | 7.3:+2127979 | MS.gene050478:CDS |
| CCCAAGGACTGTAGGTATGG+TGG | 0.645289 | 7.3:+2128144 | MS.gene050478:CDS |
| CATAAACATAGTAAGTCTTG+GGG | 0.653786 | 7.3:-2127886 | None:intergenic |
| GTGCACTGGCTTGCAATTTG+GGG | 0.664054 | 7.3:+2128178 | MS.gene050478:CDS |
| TGTGTTATCACAGGAGCACG+AGG | 0.673702 | 7.3:+2128267 | MS.gene050478:CDS |
| TCTTGGTCTCCAAATCACAC+AGG | 0.674843 | 7.3:-2128573 | None:intergenic |
| CGTCGTTATTTGACTCAATG+GGG | 0.675122 | 7.3:+2127656 | MS.gene050478:CDS |
| CAAGACACGGATGAAGAGCG+TGG | 0.684621 | 7.3:-2128682 | None:intergenic |
| AGTACAGTTGGATTCCAAGG+TGG | 0.686110 | 7.3:+2128422 | MS.gene050478:CDS |
| TGTTCCATTCTATCAAGACA+CGG | 0.695008 | 7.3:-2128695 | None:intergenic |
| GATTTGAAGACAGTTGATGG+TGG | 0.707426 | 7.3:-2127581 | None:intergenic |
| ACATTCCTATCCCCAAGACG+CGG | 0.709272 | 7.3:-2128220 | None:intergenic |
| GGGCGACGATAACCATCACG+AGG | 0.740846 | 7.3:-2127734 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATCATAAACATAGTAAGTCT+TGG | - | chr7.3:2127891-2127910 | None:intergenic | 25.0% |
| ! | GATTGAATTTCAAAGCAATA+TGG | + | chr7.3:2128446-2128465 | MS.gene050478:CDS | 25.0% |
| ! | TACTTTATGGATTCTTGTAA+TGG | + | chr7.3:2127842-2127861 | MS.gene050478:CDS | 25.0% |
| ! | TCATAAACATAGTAAGTCTT+GGG | - | chr7.3:2127890-2127909 | None:intergenic | 25.0% |
| ! | TTAAAATACAAGCTAAAGGT+TGG | - | chr7.3:2128481-2128500 | None:intergenic | 25.0% |
| !! | CAAAAAACTTGGTTACTTTA+TGG | + | chr7.3:2127829-2127848 | MS.gene050478:CDS | 25.0% |
| !! | GTTTTATAAAACTCTCTGTA+TGG | + | chr7.3:2127952-2127971 | MS.gene050478:CDS | 25.0% |
| !!! | CTCTTTAAAATACAAGCTAA+AGG | - | chr7.3:2128485-2128504 | None:intergenic | 25.0% |
| AGCAGAAGTAGTTAATTATC+AGG | + | chr7.3:2128597-2128616 | MS.gene050478:CDS | 30.0% | |
| ATTGTTGAGGAATATCTTGA+GGG | + | chr7.3:2127980-2127999 | MS.gene050478:CDS | 30.0% | |
| CATAAACATAGTAAGTCTTG+GGG | - | chr7.3:2127889-2127908 | None:intergenic | 30.0% | |
| GAAATGTGAATCTAAGCTTA+AGG | + | chr7.3:2128030-2128049 | MS.gene050478:CDS | 30.0% | |
| GCAGAAGTAGTTAATTATCA+GGG | + | chr7.3:2128598-2128617 | MS.gene050478:CDS | 30.0% | |
| GCCAAAATTATCGACAATTA+GGG | + | chr7.3:2127678-2127697 | MS.gene050478:CDS | 30.0% | |
| TATGGTCAGAGCAATAATTT+GGG | + | chr7.3:2128328-2128347 | MS.gene050478:CDS | 30.0% | |
| TCTTTACAAGTGGACAAAAA+CGG | - | chr7.3:2127779-2127798 | None:intergenic | 30.0% | |
| ! | ACCCTAATTGTCGATAATTT+TGG | - | chr7.3:2127682-2127701 | None:intergenic | 30.0% |
| ! | AGGAAGAAGTGCATATAAAA+TGG | - | chr7.3:2127631-2127650 | None:intergenic | 30.0% |
| ! | ATAATTTGGGTTTGGAGATA+TGG | + | chr7.3:2128341-2128360 | MS.gene050478:CDS | 30.0% |
| ! | GTATGCAACTTTTTGTATCT+TGG | + | chr7.3:2127707-2127726 | MS.gene050478:CDS | 30.0% |
| ! | TAATTTGGGTTTGGAGATAT+GGG | + | chr7.3:2128342-2128361 | MS.gene050478:CDS | 30.0% |
| ! | TATAAAATGGAGCCATCTTT+TGG | - | chr7.3:2127618-2127637 | None:intergenic | 30.0% |
| ! | TCTGGAATTCTCAAAAAACT+TGG | + | chr7.3:2127818-2127837 | MS.gene050478:CDS | 30.0% |
| ! | TTTTTGTCCACTTGTAAAGA+GGG | + | chr7.3:2127779-2127798 | MS.gene050478:CDS | 30.0% |
| !! | AGAGTTTTATAAAACTGCTG+AGG | - | chr7.3:2127947-2127966 | None:intergenic | 30.0% |
| !! | ATTGATTTGAAGACAGTTGA+TGG | - | chr7.3:2127587-2127606 | None:intergenic | 30.0% |
| !! | TGTAATGGTGTTATACTTTC+TGG | + | chr7.3:2127857-2127876 | MS.gene050478:CDS | 30.0% |
| AACACAGATGCAGAATTCTT+AGG | - | chr7.3:2128529-2128548 | None:intergenic | 35.0% | |
| AGTCAAATAACGACGATGAA+AGG | - | chr7.3:2127651-2127670 | None:intergenic | 35.0% | |
| ATCGTCGTTATTTGACTCAA+TGG | + | chr7.3:2127654-2127673 | MS.gene050478:CDS | 35.0% | |
| ATTAACTACTTCTGCTGTCT+TGG | - | chr7.3:2128593-2128612 | None:intergenic | 35.0% | |
| GATTGTTGAGGAATATCTTG+AGG | + | chr7.3:2127979-2127998 | MS.gene050478:CDS | 35.0% | |
| GCATCTGTGTTTATTAGACT+GGG | + | chr7.3:2128538-2128557 | MS.gene050478:CDS | 35.0% | |
| GGCCAAAATTATCGACAATT+AGG | + | chr7.3:2127677-2127696 | MS.gene050478:CDS | 35.0% | |
| GTATGGTCAGAGCAATAATT+TGG | + | chr7.3:2128327-2128346 | MS.gene050478:CDS | 35.0% | |
| TCGTCGTTATTTGACTCAAT+GGG | + | chr7.3:2127655-2127674 | MS.gene050478:CDS | 35.0% | |
| TGCATCTGTGTTTATTAGAC+TGG | + | chr7.3:2128537-2128556 | MS.gene050478:CDS | 35.0% | |
| TTGAAATTCAATCTCCACCT+TGG | - | chr7.3:2128439-2128458 | None:intergenic | 35.0% | |
| TTGTAAAGAGGGTGATGATT+TGG | + | chr7.3:2127790-2127809 | MS.gene050478:CDS | 35.0% | |
| TTTGCTAGATTCCCAAGAAA+TGG | - | chr7.3:2128635-2128654 | None:intergenic | 35.0% | |
| ! | CAATCCTTGTTTCCAAAAGA+TGG | + | chr7.3:2127603-2127622 | MS.gene050478:CDS | 35.0% |
| ! | GAACATTTTCCTGTGTGATT+TGG | + | chr7.3:2128564-2128583 | MS.gene050478:CDS | 35.0% |
| ! | GCAACTTTTTGTATCTTGGA+AGG | + | chr7.3:2127711-2127730 | MS.gene050478:CDS | 35.0% |
| ! | GTACTCATTTGAAGTACAGT+TGG | + | chr7.3:2128410-2128429 | MS.gene050478:CDS | 35.0% |
| ! | GTTTTTGTCCACTTGTAAAG+AGG | + | chr7.3:2127778-2127797 | MS.gene050478:CDS | 35.0% |
| ! | TCAGAGCAATAATTTGGGTT+TGG | + | chr7.3:2128333-2128352 | MS.gene050478:CDS | 35.0% |
| !! | TGTAGCTTTGGTTAAACTAC+CGG | + | chr7.3:2128240-2128259 | MS.gene050478:CDS | 35.0% |
| AGACTTACTCGTCGAAAACT+GGG | + | chr7.3:2128074-2128093 | MS.gene050478:CDS | 40.0% | |
| ATCATCACCCTCTTTACAAG+TGG | - | chr7.3:2127789-2127808 | None:intergenic | 40.0% | |
| ATGAGTACAGTTGCAGTAAG+TGG | - | chr7.3:2128398-2128417 | None:intergenic | 40.0% | |
| ATGATACGATGAGCAAGCAA+CGG | + | chr7.3:2127906-2127925 | MS.gene050478:CDS | 40.0% | |
| CGTCGTTATTTGACTCAATG+GGG | + | chr7.3:2127656-2127675 | MS.gene050478:CDS | 40.0% | |
| CTATTTATGATCCGCGTCTT+GGG | + | chr7.3:2128209-2128228 | MS.gene050478:CDS | 40.0% | |
| GCTTAGATTCACATTTCGCA+CGG | - | chr7.3:2128027-2128046 | None:intergenic | 40.0% | |
| GTAGTTAATTATCAGGGTCG+AGG | + | chr7.3:2128604-2128623 | MS.gene050478:CDS | 40.0% | |
| TAAGGAACGCAACACTGTAT+CGG | + | chr7.3:2128048-2128067 | MS.gene050478:CDS | 40.0% | |
| TACAGTTGCAGTAAGTGGAT+GGG | - | chr7.3:2128393-2128412 | None:intergenic | 40.0% | |
| TATTTATGATCCGCGTCTTG+GGG | + | chr7.3:2128210-2128229 | MS.gene050478:CDS | 40.0% | |
| TGAAGTACAGTTGGATTCCA+AGG | + | chr7.3:2128419-2128438 | MS.gene050478:CDS | 40.0% | |
| TTATAAAACTGCTGAGGCTC+CGG | - | chr7.3:2127941-2127960 | None:intergenic | 40.0% | |
| TTCTTGGGAATCTAGCAAAG+TGG | + | chr7.3:2128636-2128655 | MS.gene050478:CDS | 40.0% | |
| ! | TGAGGGTGATATTTGCTACA+AGG | + | chr7.3:2127997-2128016 | MS.gene050478:CDS | 40.0% |
| !! | GATTTGAAGACAGTTGATGG+TGG | - | chr7.3:2127584-2127603 | None:intergenic | 40.0% |
| ACTCGTCGAAAACTGGGAAA+TGG | + | chr7.3:2128080-2128099 | MS.gene050478:CDS | 45.0% | |
| AGCACGAGGAATCTGTTCTT+GGG | + | chr7.3:2128281-2128300 | MS.gene050478:CDS | 45.0% | |
| AGTACAGTTGGATTCCAAGG+TGG | + | chr7.3:2128422-2128441 | MS.gene050478:CDS | 45.0% | |
| CTGTGTTTATTAGACTGGGC+TGG | + | chr7.3:2128542-2128561 | MS.gene050478:CDS | 45.0% | |
| GAGACTTACTCGTCGAAAAC+TGG | + | chr7.3:2128073-2128092 | MS.gene050478:CDS | 45.0% | |
| GCTATTTATGATCCGCGTCT+TGG | + | chr7.3:2128208-2128227 | MS.gene050478:CDS | 45.0% | |
| GGAGATATGGGTTCTTGAGA+AGG | + | chr7.3:2128354-2128373 | MS.gene050478:CDS | 45.0% | |
| GTACAGTTGCAGTAAGTGGA+TGG | - | chr7.3:2128394-2128413 | None:intergenic | 45.0% | |
| TATAAAACTGCTGAGGCTCC+GGG | - | chr7.3:2127940-2127959 | None:intergenic | 45.0% | |
| TCGAGGAGCTTCCATTTCTT+GGG | + | chr7.3:2128621-2128640 | MS.gene050478:CDS | 45.0% | |
| TCTTGGTCTCCAAATCACAC+AGG | - | chr7.3:2128576-2128595 | None:intergenic | 45.0% | |
| TGGGGATAGGAATGTAGCTT+TGG | + | chr7.3:2128228-2128247 | MS.gene050478:CDS | 45.0% | |
| TTCCTTACTTTCTGCCTGCT+TGG | + | chr7.3:2128659-2128678 | MS.gene050478:CDS | 45.0% | |
| TTCTTGGGGAATCGTCAGAT+GGG | + | chr7.3:2128296-2128315 | MS.gene050478:CDS | 45.0% | |
| !! | CTGTATGGCGTTGATTGTTG+AGG | + | chr7.3:2127967-2127986 | MS.gene050478:CDS | 45.0% |
| !! | GGAGCCATCTTTTGGAAACA+AGG | - | chr7.3:2127610-2127629 | None:intergenic | 45.0% |
| !! | TAAGTGGATGGGTTAACTGC+TGG | - | chr7.3:2128382-2128401 | None:intergenic | 45.0% |
| !! | TCAGATGGGCTATTGCAGTA+TGG | + | chr7.3:2128310-2128329 | MS.gene050478:CDS | 45.0% |
| !! | TGTGCACTGGCTTGCAATTT+GGG | + | chr7.3:2128177-2128196 | MS.gene050478:CDS | 45.0% |
| !! | TTGTGCACTGGCTTGCAATT+TGG | + | chr7.3:2128176-2128195 | MS.gene050478:CDS | 45.0% |
| ACATTCCTATCCCCAAGACG+CGG | - | chr7.3:2128223-2128242 | None:intergenic | 50.0% | |
| ACCACCATACCTACAGTCCT+TGG | - | chr7.3:2128148-2128167 | None:intergenic | 50.0% | |
| ACTGTAGGTATGGTGGTTGC+AGG | + | chr7.3:2128151-2128170 | MS.gene050478:CDS | 50.0% | |
| ATGGTTATCGTCGCCCTTCT+TGG | + | chr7.3:2127741-2127760 | MS.gene050478:CDS | 50.0% | |
| CCACCATACCTACAGTCCTT+GGG | - | chr7.3:2128147-2128166 | None:intergenic | 50.0% | |
| GAGCACGAGGAATCTGTTCT+TGG | + | chr7.3:2128280-2128299 | MS.gene050478:CDS | 50.0% | |
| GCACGAGGAATCTGTTCTTG+GGG | + | chr7.3:2128282-2128301 | MS.gene050478:CDS | 50.0% | |
| GCTTTGGTTAAACTACCGGC+TGG | + | chr7.3:2128244-2128263 | MS.gene050478:CDS | 50.0% | |
| GTCGAGGAGCTTCCATTTCT+TGG | + | chr7.3:2128620-2128639 | MS.gene050478:CDS | 50.0% | |
| GTTCTTGGGGAATCGTCAGA+TGG | + | chr7.3:2128295-2128314 | MS.gene050478:CDS | 50.0% | |
| TATCTTGGAAGGCCTCGTGA+TGG | + | chr7.3:2127722-2127741 | MS.gene050478:CDS | 50.0% | |
| TCCTGTGATAACACACCAGC+CGG | - | chr7.3:2128262-2128281 | None:intergenic | 50.0% | |
| TGGTTATCGTCGCCCTTCTT+GGG | + | chr7.3:2127742-2127761 | MS.gene050478:CDS | 50.0% | |
| ! | GTGGACAAAAACGGAAGTGC+AGG | - | chr7.3:2127770-2127789 | None:intergenic | 50.0% |
| ! | TGTGTTATCACAGGAGCACG+AGG | + | chr7.3:2128267-2128286 | MS.gene050478:CDS | 50.0% |
| !! | GGTGATGATTTGGTGCGTTC+TGG | + | chr7.3:2127800-2127819 | MS.gene050478:CDS | 50.0% |
| !! | GTGCACTGGCTTGCAATTTG+GGG | + | chr7.3:2128178-2128197 | MS.gene050478:CDS | 50.0% |
| ACCGGCTGGTGTGTTATCAC+AGG | + | chr7.3:2128258-2128277 | MS.gene050478:CDS | 55.0% | |
| ATGATCCGCGTCTTGGGGAT+AGG | + | chr7.3:2128215-2128234 | MS.gene050478:CDS | 55.0% | |
| CAAGACACGGATGAAGAGCG+TGG | - | chr7.3:2128685-2128704 | None:intergenic | 55.0% | |
| CAAGCAACGGTTTCAGCTCC+CGG | + | chr7.3:2127919-2127938 | MS.gene050478:CDS | 55.0% | |
| CCCAAGGACTGTAGGTATGG+TGG | + | chr7.3:2128144-2128163 | MS.gene050478:CDS | 55.0% | |
| GAAGTGCAGGCTCCCAAGAA+GGG | - | chr7.3:2127757-2127776 | None:intergenic | 55.0% | |
| GGCCAAGCAGGCAGAAAGTA+AGG | - | chr7.3:2128664-2128683 | None:intergenic | 55.0% | |
| GTCCTTGGGCGCAACGAAAA+AGG | - | chr7.3:2128133-2128152 | None:intergenic | 55.0% | |
| TGGTTGCAGGAGTTGTGCAC+TGG | + | chr7.3:2128164-2128183 | MS.gene050478:CDS | 55.0% | |
| !! | CACCTTTTTCGTTGCGCCCA+AGG | + | chr7.3:2128128-2128147 | MS.gene050478:CDS | 55.0% |
| GCGCCCAAGGACTGTAGGTA+TGG | + | chr7.3:2128141-2128160 | MS.gene050478:CDS | 60.0% | |
| GGGCGACGATAACCATCACG+AGG | - | chr7.3:2127737-2127756 | None:intergenic | 60.0% | |
| TCGTTGCGCCCAAGGACTGT+AGG | + | chr7.3:2128136-2128155 | MS.gene050478:CDS | 60.0% | |
| ! | GATGAAGAGCGTGGCCAAGC+AGG | - | chr7.3:2128676-2128695 | None:intergenic | 60.0% |
| ! | GGAAGTGCAGGCTCCCAAGA+AGG | - | chr7.3:2127758-2127777 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 2127443 | 2128705 | 2127443 | ID=MS.gene050478 |
| chr7.3 | mRNA | 2127443 | 2128705 | 2127443 | ID=MS.gene050478.t1;Parent=MS.gene050478 |
| chr7.3 | exon | 2127443 | 2128705 | 2127443 | ID=MS.gene050478.t1.exon1;Parent=MS.gene050478.t1 |
| chr7.3 | CDS | 2127443 | 2128705 | 2127443 | ID=cds.MS.gene050478.t1;Parent=MS.gene050478.t1 |
| Gene Sequence |
| Protein sequence |
