Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74517.t1 | XP_024638161.1 | 98.1 | 260 | 5 | 0 | 1 | 260 | 1 | 260 | 1.00E-141 | 512.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74517.t1 | Q9LDC0 | 74.2 | 260 | 62 | 2 | 1 | 260 | 1 | 255 | 5.3e-107 | 388.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74517.t1 | G7JTJ9 | 98.1 | 260 | 5 | 0 | 1 | 260 | 1 | 260 | 7.3e-142 | 512.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050227 | MS.gene74517 | 0.800782 | 1.23E-48 | -1.69E-46 |
| MS.gene050719 | MS.gene74517 | 0.827913 | 1.20E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene74517 | 0.830126 | 3.50E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene74517 | 0.803691 | 3.09E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene74517 | 0.803741 | 3.02E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene74517 | 0.831662 | 1.47E-55 | -1.69E-46 |
| MS.gene052358 | MS.gene74517 | -0.802838 | 4.64E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene74517 | 0.805049 | 1.61E-49 | -1.69E-46 |
| MS.gene05795 | MS.gene74517 | 0.820638 | 6.17E-53 | -1.69E-46 |
| MS.gene058635 | MS.gene74517 | 0.843053 | 1.77E-58 | -1.69E-46 |
| MS.gene060840 | MS.gene74517 | 0.81857 | 1.83E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74517.t1 | MTR_4g039430 | 98.077 | 260 | 5 | 0 | 1 | 260 | 1 | 260 | 0.0 | 534 |
| MS.gene74517.t1 | MTR_8g080980 | 33.816 | 207 | 129 | 5 | 55 | 259 | 271 | 471 | 2.71e-22 | 95.9 |
| MS.gene74517.t1 | MTR_1g017870 | 31.068 | 206 | 134 | 5 | 56 | 259 | 60 | 259 | 4.68e-21 | 91.3 |
| MS.gene74517.t1 | MTR_1g017870 | 31.068 | 206 | 134 | 5 | 56 | 259 | 60 | 259 | 4.87e-21 | 90.9 |
| MS.gene74517.t1 | MTR_7g053470 | 31.553 | 206 | 135 | 3 | 55 | 259 | 267 | 467 | 7.10e-21 | 92.0 |
| MS.gene74517.t1 | MTR_1g017870 | 31.068 | 206 | 134 | 5 | 56 | 259 | 270 | 469 | 9.03e-21 | 91.7 |
| MS.gene74517.t1 | MTR_1g017870 | 31.068 | 206 | 134 | 5 | 56 | 259 | 270 | 469 | 1.02e-20 | 91.3 |
| MS.gene74517.t1 | MTR_1g017870 | 30.222 | 225 | 146 | 6 | 37 | 259 | 128 | 343 | 1.38e-20 | 90.9 |
| MS.gene74517.t1 | MTR_1g017870 | 30.131 | 229 | 141 | 7 | 37 | 259 | 128 | 343 | 1.41e-20 | 90.5 |
| MS.gene74517.t1 | MTR_1g017870 | 31.068 | 206 | 134 | 5 | 56 | 259 | 246 | 445 | 1.45e-20 | 90.9 |
| MS.gene74517.t1 | MTR_8g012340 | 37.662 | 154 | 90 | 4 | 107 | 259 | 327 | 475 | 8.43e-20 | 89.0 |
| MS.gene74517.t1 | MTR_8g010620 | 32.215 | 149 | 94 | 4 | 107 | 254 | 130 | 272 | 2.43e-14 | 71.6 |
| MS.gene74517.t1 | MTR_8g010620 | 32.215 | 149 | 94 | 4 | 107 | 254 | 197 | 339 | 4.21e-14 | 71.6 |
| MS.gene74517.t1 | MTR_8g010620 | 32.215 | 149 | 94 | 4 | 107 | 254 | 233 | 375 | 5.47e-14 | 71.2 |
| MS.gene74517.t1 | MTR_8g010620 | 32.215 | 149 | 94 | 4 | 107 | 254 | 258 | 400 | 7.17e-14 | 71.2 |
| MS.gene74517.t1 | MTR_8g011560 | 31.544 | 149 | 95 | 4 | 107 | 254 | 62 | 204 | 2.52e-13 | 68.2 |
| MS.gene74517.t1 | MTR_8g011100 | 30.872 | 149 | 96 | 3 | 107 | 254 | 244 | 386 | 8.82e-12 | 65.1 |
| MS.gene74517.t1 | MTR_4g055500 | 27.969 | 261 | 150 | 11 | 22 | 259 | 230 | 475 | 2.87e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74517.t1 | AT3G21640 | 74.231 | 260 | 62 | 2 | 1 | 260 | 1 | 255 | 5.08e-144 | 408 |
| MS.gene74517.t1 | AT5G48570 | 34.742 | 213 | 124 | 8 | 49 | 254 | 274 | 478 | 1.70e-21 | 94.0 |
| MS.gene74517.t1 | AT3G25230 | 31.050 | 219 | 120 | 7 | 55 | 259 | 272 | 473 | 6.59e-19 | 86.3 |
| MS.gene74517.t1 | AT3G25230 | 31.050 | 219 | 120 | 7 | 55 | 259 | 272 | 473 | 6.74e-19 | 86.3 |
| MS.gene74517.t1 | AT3G54010 | 27.500 | 240 | 133 | 10 | 45 | 259 | 250 | 473 | 2.35e-11 | 63.9 |
| MS.gene74517.t1 | AT3G54010 | 27.500 | 240 | 133 | 10 | 45 | 259 | 160 | 383 | 2.69e-11 | 63.5 |
Find 73 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATGGAAATGTTCTGTTTC+AGG | 0.222182 | 4.3:+61566297 | MS.gene74517:CDS |
| TCAACTTCAGAATCAACTTT+TGG | 0.240967 | 4.3:-61564652 | None:intergenic |
| GACTTCATGTTCCAGTTGTT+TGG | 0.278250 | 4.3:+61566500 | MS.gene74517:CDS |
| TCTGCCATTGGTGGAACATT+TGG | 0.294220 | 4.3:-61566097 | None:intergenic |
| GGTTACAAAACAAATTATTA+AGG | 0.302747 | 4.3:+61564690 | MS.gene74517:CDS |
| TTATGGTGGTAGTCCATTAC+AGG | 0.321001 | 4.3:+61565088 | MS.gene74517:intron |
| CCAGTTGTTTGGGAAGTATA+GGG | 0.330723 | 4.3:+61566511 | MS.gene74517:CDS |
| AAATGACTGGCTTGGGCATT+GGG | 0.332295 | 4.3:+61565990 | MS.gene74517:CDS |
| CTGCGTGTGAGCTGGGAATT+AGG | 0.336747 | 4.3:+61566046 | MS.gene74517:CDS |
| CGACCAATTGAGATGGTAAT+AGG | 0.338090 | 4.3:+61565162 | MS.gene74517:CDS |
| GTTTGGGAAGTATAGGGATA+TGG | 0.339954 | 4.3:+61566517 | MS.gene74517:CDS |
| ACTTCATGTTCCAGTTGTTT+GGG | 0.360386 | 4.3:+61566501 | MS.gene74517:CDS |
| CCCTATACTTCCCAAACAAC+TGG | 0.377001 | 4.3:-61566511 | None:intergenic |
| GTTTATGAAGTTGAGCTCAT+TGG | 0.387560 | 4.3:+61566124 | MS.gene74517:CDS |
| GGACTACTCAATAATTCTTC+AGG | 0.387637 | 4.3:-61564628 | None:intergenic |
| TCCAGTTGTTTGGGAAGTAT+AGG | 0.389067 | 4.3:+61566510 | MS.gene74517:CDS |
| GAGCGTTGCTGCGTGTGAGC+TGG | 0.407608 | 4.3:+61566038 | MS.gene74517:CDS |
| GTGAGCTGGGAATTAGGATA+TGG | 0.419661 | 4.3:+61566052 | MS.gene74517:CDS |
| TTTCCTATTACCATCTCAAT+TGG | 0.421411 | 4.3:-61565165 | None:intergenic |
| GAAATGACTGGCTTGGGCAT+TGG | 0.428307 | 4.3:+61565989 | MS.gene74517:CDS |
| TGACTGTAGAGGAACGGATT+GGG | 0.429854 | 4.3:+61566254 | MS.gene74517:CDS |
| ACAAAAGCATGTTGAATACT+TGG | 0.433435 | 4.3:-61564734 | None:intergenic |
| AAGAAAGAAATGACTGGCTT+GGG | 0.441743 | 4.3:+61565983 | MS.gene74517:CDS |
| GAAAGTACTGAATATGCAAA+AGG | 0.441865 | 4.3:+61564598 | MS.gene74517:CDS |
| ATGTCAGGCCATAGCTTACA+TGG | 0.460197 | 4.3:+61566472 | MS.gene74517:intron |
| GAAGAAAGAAATGACTGGCT+TGG | 0.461382 | 4.3:+61565982 | MS.gene74517:CDS |
| TCTCAGACCACGCCCTGTAA+TGG | 0.475502 | 4.3:-61565101 | None:intergenic |
| GGCCATGCAACAGTATGAAA+TGG | 0.476558 | 4.3:+61566336 | MS.gene74517:CDS |
| AAAGTACTGAATATGCAAAA+GGG | 0.478686 | 4.3:+61564599 | MS.gene74517:CDS |
| GGGGTGGCAAGCATGAAAGC+TGG | 0.481889 | 4.3:+61566010 | MS.gene74517:CDS |
| GAAGTATAGGGATATGGCTC+TGG | 0.484336 | 4.3:+61566523 | MS.gene74517:CDS |
| ATTGAGATGGTAATAGGAAA+AGG | 0.485564 | 4.3:+61565168 | MS.gene74517:CDS |
| GACAGGCCGCCGTGTTAAGA+TGG | 0.492108 | 4.3:-61566562 | None:intergenic |
| GGGTGGCAAGCATGAAAGCT+GGG | 0.494339 | 4.3:+61566011 | MS.gene74517:CDS |
| TCATAAACTAAATCTGCCAT+TGG | 0.508037 | 4.3:-61566109 | None:intergenic |
| ATGACTGTAGAGGAACGGAT+TGG | 0.522055 | 4.3:+61566253 | MS.gene74517:CDS |
| AACGGATTGGGGCAGCAGAT+CGG | 0.529421 | 4.3:+61566266 | MS.gene74517:CDS |
| TAAACTAAATCTGCCATTGG+TGG | 0.530780 | 4.3:-61566106 | None:intergenic |
| AGCGTTGCTGCGTGTGAGCT+GGG | 0.534499 | 4.3:+61566039 | MS.gene74517:CDS |
| AAGCATGTTGAATACTTGGA+AGG | 0.544025 | 4.3:-61564730 | None:intergenic |
| GTCATCTCCCATGTAAGCTA+TGG | 0.545323 | 4.3:-61566480 | None:intergenic |
| GGCAGCAGATCGGAGAAAGA+TGG | 0.546425 | 4.3:+61566276 | MS.gene74517:CDS |
| AGTTGAAGTTCTTCATGAGA+AGG | 0.548105 | 4.3:+61564669 | MS.gene74517:CDS |
| TGGTAGTCCATTACAGGGCG+TGG | 0.549466 | 4.3:+61565094 | MS.gene74517:intron |
| ACAAAACAAATTATTAAGGA+AGG | 0.552128 | 4.3:+61564694 | MS.gene74517:CDS |
| TAAATTTGAAGATACATGGC+AGG | 0.555459 | 4.3:+61565134 | MS.gene74517:CDS |
| GCGGTTCAGCTTAATCAGAC+AGG | 0.561365 | 4.3:-61566579 | None:intergenic |
| GAATTAGGATATGGAAAGGA+AGG | 0.562161 | 4.3:+61566061 | MS.gene74517:CDS |
| CAGGGCGTGGTCTGAGAACA+CGG | 0.563793 | 4.3:+61565107 | MS.gene74517:CDS |
| AACCGCTATGAAGAAGCTAT+AGG | 0.568196 | 4.3:+61566596 | MS.gene74517:CDS |
| GACTGGCTTGGGCATTGGGG+TGG | 0.573654 | 4.3:+61565994 | MS.gene74517:CDS |
| CAAATTATTAAGGAAGGTCA+TGG | 0.574339 | 4.3:+61564700 | MS.gene74517:CDS |
| AACCATTTCATACTGTTGCA+TGG | 0.576813 | 4.3:-61566338 | None:intergenic |
| ACAGAGAAGAAAGAAATGAC+TGG | 0.578132 | 4.3:+61565977 | MS.gene74517:intron |
| GACTGTAGAGGAACGGATTG+GGG | 0.579307 | 4.3:+61566255 | MS.gene74517:CDS |
| AGCATAAATTTGAAGATACA+TGG | 0.586003 | 4.3:+61565130 | MS.gene74517:CDS |
| CTGGGAATTAGGATATGGAA+AGG | 0.597900 | 4.3:+61566057 | MS.gene74517:CDS |
| GCAGATCGGAGAAAGATGGA+TGG | 0.599142 | 4.3:+61566280 | MS.gene74517:CDS |
| GCCGCCGTGTTAAGATGGCA+TGG | 0.599939 | 4.3:-61566557 | None:intergenic |
| GTTTCAGGAAAATAAACTAG+AGG | 0.610535 | 4.3:+61566312 | MS.gene74517:CDS |
| TCAGGAAAATAAACTAGAGG+AGG | 0.614029 | 4.3:+61566315 | MS.gene74517:CDS |
| AAGTACTGAATATGCAAAAG+GGG | 0.616531 | 4.3:+61564600 | MS.gene74517:CDS |
| GTCCTATAGCTTCTTCATAG+CGG | 0.623004 | 4.3:-61566598 | None:intergenic |
| AATGACTGGCTTGGGCATTG+GGG | 0.631535 | 4.3:+61565991 | MS.gene74517:CDS |
| GTGATATGACTGTAGAGGAA+CGG | 0.631871 | 4.3:+61566248 | MS.gene74517:CDS |
| TATGGTGGTAGTCCATTACA+GGG | 0.637407 | 4.3:+61565089 | MS.gene74517:intron |
| TCGCAGTGATATGACTGTAG+AGG | 0.641089 | 4.3:+61566243 | MS.gene74517:CDS |
| GAATCCATGCCATCTTAACA+CGG | 0.645723 | 4.3:+61566553 | MS.gene74517:CDS |
| GGAGCAACGACCAATTGAGA+TGG | 0.655756 | 4.3:+61565155 | MS.gene74517:CDS |
| GGTGGCAAGCATGAAAGCTG+GGG | 0.672895 | 4.3:+61566012 | MS.gene74517:CDS |
| TGTCAGGCCATAGCTTACAT+GGG | 0.675965 | 4.3:+61566473 | MS.gene74517:intron |
| TCTCAACCACAATCAAAACC+AGG | 0.685386 | 4.3:+61564326 | MS.gene74517:CDS |
| TCCATGCCATCTTAACACGG+CGG | 0.771881 | 4.3:+61566556 | MS.gene74517:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTATATTTATTTTAGTTCA+TGG | + | chr4.3:61565411-61565430 | MS.gene74517:intron | 15.0% |
| !! | ACAAAACAAATTATTAAGGA+AGG | + | chr4.3:61564694-61564713 | MS.gene74517:CDS | 20.0% |
| !! | ACTAAAATAAATATACACTC+AGG | - | chr4.3:61565408-61565427 | None:intergenic | 20.0% |
| !! | ATAAATGGAAATTAATTACC+TGG | - | chr4.3:61564347-61564366 | None:intergenic | 20.0% |
| !! | CTAAAATAAATATACACTCA+GGG | - | chr4.3:61565407-61565426 | None:intergenic | 20.0% |
| !! | CTTGATAAAAGTTTATAAAG+AGG | + | chr4.3:61565577-61565596 | MS.gene74517:intron | 20.0% |
| !! | GGTTACAAAACAAATTATTA+AGG | + | chr4.3:61564690-61564709 | MS.gene74517:CDS | 20.0% |
| !! | TAAAATAAATATACACTCAG+GGG | - | chr4.3:61565406-61565425 | None:intergenic | 20.0% |
| !! | TTATAAACTGGTAATAGAAA+TGG | + | chr4.3:61565294-61565313 | MS.gene74517:intron | 20.0% |
| !! | TTCAACAAGAGAAAATAAAA+AGG | - | chr4.3:61565040-61565059 | None:intergenic | 20.0% |
| !!! | AGAGTAAATTTTCATTTTAG+TGG | + | chr4.3:61565332-61565351 | MS.gene74517:intron | 20.0% |
| !!! | CAGAGATTTTTATGTAATTT+TGG | + | chr4.3:61565493-61565512 | MS.gene74517:intron | 20.0% |
| ! | AAAGAAATCCAATTGATCAA+TGG | - | chr4.3:61565229-61565248 | None:intergenic | 25.0% |
| ! | AACAAAAGAAAATTTCCTCA+CGG | - | chr4.3:61564909-61564928 | None:intergenic | 25.0% |
| ! | ACAATTTAGAGAATAGATGT+AGG | - | chr4.3:61565262-61565281 | None:intergenic | 25.0% |
| ! | ACTATCAAAAGAGATATTTG+AGG | + | chr4.3:61565443-61565462 | MS.gene74517:intron | 25.0% |
| ! | AGCATAAATTTGAAGATACA+TGG | + | chr4.3:61565130-61565149 | MS.gene74517:CDS | 25.0% |
| ! | ATTCATAATTATGACCTGTA+TGG | + | chr4.3:61565064-61565083 | MS.gene74517:intron | 25.0% |
| ! | GATAAAAGTTTATAAAGAGG+AGG | + | chr4.3:61565580-61565599 | MS.gene74517:intron | 25.0% |
| ! | GATACAAGACTAATATTTAC+AGG | - | chr4.3:61565728-61565747 | None:intergenic | 25.0% |
| ! | TATAGTGAGTAAAATTCACA+GGG | + | chr4.3:61566214-61566233 | MS.gene74517:intron | 25.0% |
| ! | TTATAGTGAGTAAAATTCAC+AGG | + | chr4.3:61566213-61566232 | MS.gene74517:intron | 25.0% |
| !! | GTTTTCATTAAATTGTTGCA+TGG | + | chr4.3:61566170-61566189 | MS.gene74517:intron | 25.0% |
| !! | TGATTTTCGTGTTTATAAAC+TGG | + | chr4.3:61565282-61565301 | MS.gene74517:intron | 25.0% |
| !! | TTTTCTTGACCTACAAAATA+AGG | - | chr4.3:61564556-61564575 | None:intergenic | 25.0% |
| !!! | AAAGTACTGAATATGCAAAA+GGG | + | chr4.3:61564599-61564618 | MS.gene74517:CDS | 25.0% |
| !!! | ATGCTTGAAGTTTAAAGTTT+TGG | + | chr4.3:61565192-61565211 | MS.gene74517:intron | 25.0% |
| !!! | ATGTAATTTTGGTACATTCA+AGG | + | chr4.3:61565504-61565523 | MS.gene74517:intron | 25.0% |
| !!! | TCTTTAACAGACTTGTTATT+TGG | + | chr4.3:61565934-61565953 | MS.gene74517:intron | 25.0% |
| ATTAAATTGTTGCATGGTCA+CGG | + | chr4.3:61566176-61566195 | MS.gene74517:intron | 30.0% | |
| ATTATGACCTGTATGGTTTA+TGG | + | chr4.3:61565071-61565090 | MS.gene74517:intron | 30.0% | |
| ATTGAGATGGTAATAGGAAA+AGG | + | chr4.3:61565168-61565187 | MS.gene74517:CDS | 30.0% | |
| CAAATTATTAAGGAAGGTCA+TGG | + | chr4.3:61564700-61564719 | MS.gene74517:CDS | 30.0% | |
| CTGTCATTGTGTTGAAATTT+GGG | - | chr4.3:61565648-61565667 | None:intergenic | 30.0% | |
| GTATCACATGAGTGAATAAA+TGG | - | chr4.3:61564362-61564381 | None:intergenic | 30.0% | |
| GTTTCAGGAAAATAAACTAG+AGG | + | chr4.3:61566312-61566331 | MS.gene74517:CDS | 30.0% | |
| TAAATTTGAAGATACATGGC+AGG | + | chr4.3:61565134-61565153 | MS.gene74517:CDS | 30.0% | |
| TCATAAACTAAATCTGCCAT+TGG | - | chr4.3:61566112-61566131 | None:intergenic | 30.0% | |
| TCGAATTTCATGTATGATTG+AGG | + | chr4.3:61564527-61564546 | MS.gene74517:intron | 30.0% | |
| TGTCATTGTGTTGAAATTTG+GGG | - | chr4.3:61565647-61565666 | None:intergenic | 30.0% | |
| TTTCCTATTACCATCTCAAT+TGG | - | chr4.3:61565168-61565187 | None:intergenic | 30.0% | |
| ! | ACAAAAGCATGTTGAATACT+TGG | - | chr4.3:61564737-61564756 | None:intergenic | 30.0% |
| ! | ATTCAACATGCTTTTGTAAG+TGG | + | chr4.3:61564740-61564759 | MS.gene74517:intron | 30.0% |
| ! | TCAACTTCAGAATCAACTTT+TGG | - | chr4.3:61564655-61564674 | None:intergenic | 30.0% |
| ! | TTTGAATGACCCAAATGTTT+TGG | + | chr4.3:61564879-61564898 | MS.gene74517:intron | 30.0% |
| !! | AAGTACTGAATATGCAAAAG+GGG | + | chr4.3:61564600-61564619 | MS.gene74517:CDS | 30.0% |
| !! | CTTTTGTTTAGACTGAATGT+GGG | + | chr4.3:61564921-61564940 | MS.gene74517:intron | 30.0% |
| !! | GAAAGTACTGAATATGCAAA+AGG | + | chr4.3:61564598-61564617 | MS.gene74517:CDS | 30.0% |
| !! | GTTTGCTAAGTTGATTATCT+TGG | + | chr4.3:61566446-61566465 | MS.gene74517:intron | 30.0% |
| !! | TCTTTTGTTTAGACTGAATG+TGG | + | chr4.3:61564920-61564939 | MS.gene74517:intron | 30.0% |
| !!! | GACTTGTTATTTGGTTTTGA+TGG | + | chr4.3:61565943-61565962 | MS.gene74517:intron | 30.0% |
| !!! | TAATTACCTGGTTTTGATTG+TGG | - | chr4.3:61564335-61564354 | None:intergenic | 30.0% |
| !!! | TTGAGGAAACCTTATTTTGT+AGG | + | chr4.3:61564544-61564563 | MS.gene74517:intron | 30.0% |
| AACCATTTCATACTGTTGCA+TGG | - | chr4.3:61566341-61566360 | None:intergenic | 35.0% | |
| AAGCATGTTGAATACTTGGA+AGG | - | chr4.3:61564733-61564752 | None:intergenic | 35.0% | |
| ACAGAGAAGAAAGAAATGAC+TGG | + | chr4.3:61565977-61565996 | MS.gene74517:intron | 35.0% | |
| ACGTGAAGCAAAACTGTATT+AGG | + | chr4.3:61564952-61564971 | MS.gene74517:intron | 35.0% | |
| ACTTCATGTTCCAGTTGTTT+GGG | + | chr4.3:61566501-61566520 | MS.gene74517:CDS | 35.0% | |
| AGTTGAAGTTCTTCATGAGA+AGG | + | chr4.3:61564669-61564688 | MS.gene74517:CDS | 35.0% | |
| ATTCAAGGACTACAGTGTAT+TGG | + | chr4.3:61565519-61565538 | MS.gene74517:intron | 35.0% | |
| CACGGTAAACCAAAACATTT+GGG | - | chr4.3:61564891-61564910 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr4.3:61565624-61565643 | None:intergenic | 35.0% | |
| GAATTAGGATATGGAAAGGA+AGG | + | chr4.3:61566061-61566080 | MS.gene74517:CDS | 35.0% | |
| GCTGTCATTGTGTTGAAATT+TGG | - | chr4.3:61565649-61565668 | None:intergenic | 35.0% | |
| GGACTACTCAATAATTCTTC+AGG | - | chr4.3:61564631-61564650 | None:intergenic | 35.0% | |
| GTTTATGAAGTTGAGCTCAT+TGG | + | chr4.3:61566124-61566143 | MS.gene74517:CDS | 35.0% | |
| TAAACTAAATCTGCCATTGG+TGG | - | chr4.3:61566109-61566128 | None:intergenic | 35.0% | |
| TAGTGGCTTAATGTGTAAGA+CGG | + | chr4.3:61565349-61565368 | MS.gene74517:intron | 35.0% | |
| TCACGGTAAACCAAAACATT+TGG | - | chr4.3:61564892-61564911 | None:intergenic | 35.0% | |
| TCAGGAAAATAAACTAGAGG+AGG | + | chr4.3:61566315-61566334 | MS.gene74517:CDS | 35.0% | |
| TCTTGTGTCCATTGATCAAT+TGG | + | chr4.3:61565218-61565237 | MS.gene74517:intron | 35.0% | |
| TGATTATCTTGGTTCATGTC+AGG | + | chr4.3:61566457-61566476 | MS.gene74517:intron | 35.0% | |
| TTCAAGGACTACAGTGTATT+GGG | + | chr4.3:61565520-61565539 | MS.gene74517:intron | 35.0% | |
| ! | ACTTCAGAATCAACTTTTGG+AGG | - | chr4.3:61564652-61564671 | None:intergenic | 35.0% |
| ! | TTTTCCAAATGTTCCACCAA+TGG | + | chr4.3:61566093-61566112 | MS.gene74517:CDS | 35.0% |
| !! | AAGAAAGAAATGACTGGCTT+GGG | + | chr4.3:61565983-61566002 | MS.gene74517:CDS | 35.0% |
| !!! | AAATGTTTTGGTTTACCGTG+AGG | + | chr4.3:61564891-61564910 | MS.gene74517:intron | 35.0% |
| AACCGCTATGAAGAAGCTAT+AGG | + | chr4.3:61566596-61566615 | MS.gene74517:CDS | 40.0% | |
| ACTACCACCATAAACCATAC+AGG | - | chr4.3:61565081-61565100 | None:intergenic | 40.0% | |
| AGAGCTCATAAGAAGAGTAG+AGG | - | chr4.3:61565006-61565025 | None:intergenic | 40.0% | |
| ATGACCTGTATGGTTTATGG+TGG | + | chr4.3:61565074-61565093 | MS.gene74517:intron | 40.0% | |
| ATTTGAGGACCAAACTCACT+AGG | + | chr4.3:61565458-61565477 | MS.gene74517:intron | 40.0% | |
| CGACCAATTGAGATGGTAAT+AGG | + | chr4.3:61565162-61565181 | MS.gene74517:CDS | 40.0% | |
| CTGGGAATTAGGATATGGAA+AGG | + | chr4.3:61566057-61566076 | MS.gene74517:CDS | 40.0% | |
| GAATCCATGCCATCTTAACA+CGG | + | chr4.3:61566553-61566572 | MS.gene74517:CDS | 40.0% | |
| GACGCATTGAAGGACAAAAA+TGG | + | chr4.3:61565673-61565692 | MS.gene74517:intron | 40.0% | |
| GACTTCATGTTCCAGTTGTT+TGG | + | chr4.3:61566500-61566519 | MS.gene74517:CDS | 40.0% | |
| GGATGGAAATGTTCTGTTTC+AGG | + | chr4.3:61566297-61566316 | MS.gene74517:CDS | 40.0% | |
| GTCCTATAGCTTCTTCATAG+CGG | - | chr4.3:61566601-61566620 | None:intergenic | 40.0% | |
| GTGATATGACTGTAGAGGAA+CGG | + | chr4.3:61566248-61566267 | MS.gene74517:CDS | 40.0% | |
| TATGGTGGTAGTCCATTACA+GGG | + | chr4.3:61565089-61565108 | MS.gene74517:intron | 40.0% | |
| TCTCAACCACAATCAAAACC+AGG | + | chr4.3:61564326-61564345 | MS.gene74517:CDS | 40.0% | |
| TTATGACATCTAGCGTAGTG+TGG | + | chr4.3:61565874-61565893 | MS.gene74517:intron | 40.0% | |
| TTATGGTGGTAGTCCATTAC+AGG | + | chr4.3:61565088-61565107 | MS.gene74517:intron | 40.0% | |
| TTTGTCCTTCAATGCGTCAA+GGG | - | chr4.3:61565671-61565690 | None:intergenic | 40.0% | |
| ! | AATGAGTTCTGGCAAATGAC+AGG | + | chr4.3:61565782-61565801 | MS.gene74517:intron | 40.0% |
| ! | ATGAGTTCTGGCAAATGACA+GGG | + | chr4.3:61565783-61565802 | MS.gene74517:intron | 40.0% |
| ! | ATTGAGTTCTGGCAAATGAC+AGG | + | chr4.3:61565754-61565773 | MS.gene74517:intron | 40.0% |
| ! | CCAGTTGTTTGGGAAGTATA+GGG | + | chr4.3:61566511-61566530 | MS.gene74517:CDS | 40.0% |
| ! | GAAGAAAGAAATGACTGGCT+TGG | + | chr4.3:61565982-61566001 | MS.gene74517:CDS | 40.0% |
| ! | GCATCTTTGATCAGAAGTGT+TGG | + | chr4.3:61564483-61564502 | MS.gene74517:intron | 40.0% |
| ! | GTTTGGGAAGTATAGGGATA+TGG | + | chr4.3:61566517-61566536 | MS.gene74517:CDS | 40.0% |
| ! | TCCAGTTGTTTGGGAAGTAT+AGG | + | chr4.3:61566510-61566529 | MS.gene74517:CDS | 40.0% |
| ! | TGTCATTTGCCAGAACTCAA+TGG | - | chr4.3:61565755-61565774 | None:intergenic | 40.0% |
| ! | TGTCATTTGCCAGAACTCAT+TGG | - | chr4.3:61565783-61565802 | None:intergenic | 40.0% |
| ! | TTGAGTTCTGGCAAATGACA+GGG | + | chr4.3:61565755-61565774 | MS.gene74517:intron | 40.0% |
| ! | TTTTGTCCTTCAATGCGTCA+AGG | - | chr4.3:61565672-61565691 | None:intergenic | 40.0% |
| AGAGTCTCATCTATCCGATG+TGG | - | chr4.3:61565559-61565578 | None:intergenic | 45.0% | |
| ATCAAAGATGCGTCTGGTGT+CGG | - | chr4.3:61564474-61564493 | None:intergenic | 45.0% | |
| ATCTATCCGATGTGGGACTT+GGG | - | chr4.3:61565551-61565570 | None:intergenic | 45.0% | |
| ATGACTGTAGAGGAACGGAT+TGG | + | chr4.3:61566253-61566272 | MS.gene74517:CDS | 45.0% | |
| ATGTCAGGCCATAGCTTACA+TGG | + | chr4.3:61566472-61566491 | MS.gene74517:intron | 45.0% | |
| CCCTATACTTCCCAAACAAC+TGG | - | chr4.3:61566514-61566533 | None:intergenic | 45.0% | |
| CTTCTGATCAAAGATGCGTC+TGG | - | chr4.3:61564480-61564499 | None:intergenic | 45.0% | |
| GAAAAACCCAAGTCCCACAT+CGG | + | chr4.3:61565542-61565561 | MS.gene74517:intron | 45.0% | |
| GAAGTATAGGGATATGGCTC+TGG | + | chr4.3:61566523-61566542 | MS.gene74517:CDS | 45.0% | |
| GAGTCTCATCTATCCGATGT+GGG | - | chr4.3:61565558-61565577 | None:intergenic | 45.0% | |
| GCATCTTGTCCTAGTGAGTT+TGG | - | chr4.3:61565470-61565489 | None:intergenic | 45.0% | |
| GGCCATGCAACAGTATGAAA+TGG | + | chr4.3:61566336-61566355 | MS.gene74517:CDS | 45.0% | |
| GTATCCATGCCATTGAGTTC+TGG | + | chr4.3:61565743-61565762 | MS.gene74517:intron | 45.0% | |
| GTCATCTCCCATGTAAGCTA+TGG | - | chr4.3:61566483-61566502 | None:intergenic | 45.0% | |
| GTGAGCTGGGAATTAGGATA+TGG | + | chr4.3:61566052-61566071 | MS.gene74517:CDS | 45.0% | |
| TCGCAGTGATATGACTGTAG+AGG | + | chr4.3:61566243-61566262 | MS.gene74517:CDS | 45.0% | |
| TCTGCCATTGGTGGAACATT+TGG | - | chr4.3:61566100-61566119 | None:intergenic | 45.0% | |
| TGTCAGGCCATAGCTTACAT+GGG | + | chr4.3:61566473-61566492 | MS.gene74517:intron | 45.0% | |
| TGTTGCGTCAGTGTTGTATC+TGG | - | chr4.3:61564390-61564409 | None:intergenic | 45.0% | |
| TTTGCCAGAACTCAATGGCA+TGG | - | chr4.3:61565750-61565769 | None:intergenic | 45.0% | |
| ! | TGACTGTAGAGGAACGGATT+GGG | + | chr4.3:61566254-61566273 | MS.gene74517:CDS | 45.0% |
| !! | AAATGACTGGCTTGGGCATT+GGG | + | chr4.3:61565990-61566009 | MS.gene74517:CDS | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr4.3:61565615-61565634 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr4.3:61565612-61565631 | MS.gene74517:intron | 45.0% |
| !! | GAAGTGTTGGTGTTACAGAG+AGG | + | chr4.3:61564496-61564515 | MS.gene74517:intron | 45.0% |
| CATCTATCCGATGTGGGACT+TGG | - | chr4.3:61565552-61565571 | None:intergenic | 50.0% | |
| GCAGATCGGAGAAAGATGGA+TGG | + | chr4.3:61566280-61566299 | MS.gene74517:CDS | 50.0% | |
| GCGGTTCAGCTTAATCAGAC+AGG | - | chr4.3:61566582-61566601 | None:intergenic | 50.0% | |
| GGAGCAACGACCAATTGAGA+TGG | + | chr4.3:61565155-61565174 | MS.gene74517:CDS | 50.0% | |
| TCCATGCCATCTTAACACGG+CGG | + | chr4.3:61566556-61566575 | MS.gene74517:CDS | 50.0% | |
| !! | AATGACTGGCTTGGGCATTG+GGG | + | chr4.3:61565991-61566010 | MS.gene74517:CDS | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr4.3:61565610-61565629 | None:intergenic | 50.0% |
| !! | GAAATGACTGGCTTGGGCAT+TGG | + | chr4.3:61565989-61566008 | MS.gene74517:CDS | 50.0% |
| !! | GACTGTAGAGGAACGGATTG+GGG | + | chr4.3:61566255-61566274 | MS.gene74517:CDS | 50.0% |
| CTGCGTGTGAGCTGGGAATT+AGG | + | chr4.3:61566046-61566065 | MS.gene74517:CDS | 55.0% | |
| GACAGCCCTTGACGCATTGA+AGG | + | chr4.3:61565663-61565682 | MS.gene74517:intron | 55.0% | |
| GCACTCCTCACCTTACAAGC+CGG | + | chr4.3:61565602-61565621 | MS.gene74517:intron | 55.0% | |
| GGCAGCAGATCGGAGAAAGA+TGG | + | chr4.3:61566276-61566295 | MS.gene74517:CDS | 55.0% | |
| GGGTGGCAAGCATGAAAGCT+GGG | + | chr4.3:61566011-61566030 | MS.gene74517:CDS | 55.0% | |
| GGTGGCAAGCATGAAAGCTG+GGG | + | chr4.3:61566012-61566031 | MS.gene74517:CDS | 55.0% | |
| TCTCAGACCACGCCCTGTAA+TGG | - | chr4.3:61565104-61565123 | None:intergenic | 55.0% | |
| TGGTAGTCCATTACAGGGCG+TGG | + | chr4.3:61565094-61565113 | MS.gene74517:intron | 55.0% | |
| ! | GACAGGGTGCCAATGAGTTC+TGG | + | chr4.3:61565771-61565790 | MS.gene74517:intron | 55.0% |
| !! | AACGGATTGGGGCAGCAGAT+CGG | + | chr4.3:61566266-61566285 | MS.gene74517:CDS | 55.0% |
| AGCGTTGCTGCGTGTGAGCT+GGG | + | chr4.3:61566039-61566058 | MS.gene74517:CDS | 60.0% | |
| CAGGGCGTGGTCTGAGAACA+CGG | + | chr4.3:61565107-61565126 | MS.gene74517:CDS | 60.0% | |
| GACAGGCCGCCGTGTTAAGA+TGG | - | chr4.3:61566565-61566584 | None:intergenic | 60.0% | |
| GCCGCCGTGTTAAGATGGCA+TGG | - | chr4.3:61566560-61566579 | None:intergenic | 60.0% | |
| GGGGTGGCAAGCATGAAAGC+TGG | + | chr4.3:61566010-61566029 | MS.gene74517:CDS | 60.0% | |
| ! | GAGCGTTGCTGCGTGTGAGC+TGG | + | chr4.3:61566038-61566057 | MS.gene74517:CDS | 65.0% |
| !! | GACTGGCTTGGGCATTGGGG+TGG | + | chr4.3:61565994-61566013 | MS.gene74517:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 61564308 | 61566631 | 61564308 | ID=MS.gene74517 |
| chr4.3 | mRNA | 61564308 | 61566631 | 61564308 | ID=MS.gene74517.t1;Parent=MS.gene74517 |
| chr4.3 | exon | 61564308 | 61564347 | 61564308 | ID=MS.gene74517.t1.exon1;Parent=MS.gene74517.t1 |
| chr4.3 | CDS | 61564308 | 61564347 | 61564308 | ID=cds.MS.gene74517.t1;Parent=MS.gene74517.t1 |
| chr4.3 | exon | 61564566 | 61564754 | 61564566 | ID=MS.gene74517.t1.exon2;Parent=MS.gene74517.t1 |
| chr4.3 | CDS | 61564566 | 61564754 | 61564566 | ID=cds.MS.gene74517.t1;Parent=MS.gene74517.t1 |
| chr4.3 | exon | 61565100 | 61565189 | 61565100 | ID=MS.gene74517.t1.exon3;Parent=MS.gene74517.t1 |
| chr4.3 | CDS | 61565100 | 61565189 | 61565100 | ID=cds.MS.gene74517.t1;Parent=MS.gene74517.t1 |
| chr4.3 | exon | 61565981 | 61566165 | 61565981 | ID=MS.gene74517.t1.exon4;Parent=MS.gene74517.t1 |
| chr4.3 | CDS | 61565981 | 61566165 | 61565981 | ID=cds.MS.gene74517.t1;Parent=MS.gene74517.t1 |
| chr4.3 | exon | 61566235 | 61566357 | 61566235 | ID=MS.gene74517.t1.exon5;Parent=MS.gene74517.t1 |
| chr4.3 | CDS | 61566235 | 61566357 | 61566235 | ID=cds.MS.gene74517.t1;Parent=MS.gene74517.t1 |
| chr4.3 | exon | 61566479 | 61566631 | 61566479 | ID=MS.gene74517.t1.exon6;Parent=MS.gene74517.t1 |
| chr4.3 | CDS | 61566479 | 61566631 | 61566479 | ID=cds.MS.gene74517.t1;Parent=MS.gene74517.t1 |
| Gene Sequence |
| Protein sequence |
