Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75009.t1 | XP_013468188.1 | 98.8 | 563 | 7 | 0 | 1 | 563 | 1 | 563 | 0.00E+00 | 1095.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75009.t1 | Q9LYW0 | 59.0 | 593 | 198 | 11 | 1 | 562 | 1 | 579 | 1.2e-193 | 677.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75009.t1 | A0A072VVV3 | 98.8 | 563 | 7 | 0 | 1 | 563 | 1 | 563 | 0.0e+00 | 1095.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94631 | MS.gene75009 | PPI |
| MS.gene75009 | MS.gene068040 | PPI |
| MS.gene75009 | MS.gene02183 | PPI |
| MS.gene75009 | MS.gene35341 | PPI |
| MS.gene75009 | MS.gene028462 | PPI |
| MS.gene75009 | MS.gene90204 | PPI |
| MS.gene75009 | MS.gene053563 | PPI |
| MS.gene91505 | MS.gene75009 | PPI |
| MS.gene75009 | MS.gene002224 | PPI |
| MS.gene75009 | MS.gene073115 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75009.t1 | MTR_1g064360 | 98.757 | 563 | 7 | 0 | 1 | 563 | 1 | 563 | 0.0 | 1145 |
| MS.gene75009.t1 | MTR_2g018750 | 71.138 | 589 | 135 | 7 | 1 | 562 | 1 | 581 | 0.0 | 837 |
| MS.gene75009.t1 | MTR_1g094850 | 52.931 | 580 | 237 | 7 | 1 | 553 | 1 | 571 | 0.0 | 612 |
| MS.gene75009.t1 | MTR_2g048390 | 51.209 | 455 | 192 | 6 | 1 | 428 | 1 | 452 | 3.14e-159 | 462 |
| MS.gene75009.t1 | MTR_8g078900 | 38.907 | 622 | 278 | 14 | 17 | 550 | 11 | 618 | 9.12e-138 | 415 |
| MS.gene75009.t1 | MTR_2g084595 | 36.503 | 589 | 325 | 9 | 13 | 560 | 10 | 590 | 2.11e-130 | 395 |
| MS.gene75009.t1 | MTR_8g078900 | 38.602 | 601 | 267 | 14 | 38 | 550 | 2 | 588 | 1.60e-128 | 390 |
| MS.gene75009.t1 | MTR_8g078900 | 39.890 | 544 | 249 | 11 | 74 | 550 | 46 | 578 | 6.31e-125 | 380 |
| MS.gene75009.t1 | MTR_2g009340 | 37.803 | 537 | 275 | 9 | 5 | 486 | 23 | 555 | 4.76e-120 | 370 |
| MS.gene75009.t1 | MTR_4g093850 | 37.218 | 532 | 278 | 8 | 5 | 486 | 23 | 548 | 2.79e-117 | 362 |
| MS.gene75009.t1 | MTR_5g032780 | 38.815 | 523 | 280 | 7 | 1 | 483 | 1 | 523 | 1.85e-113 | 351 |
| MS.gene75009.t1 | MTR_7g073980 | 37.708 | 541 | 295 | 13 | 26 | 547 | 33 | 550 | 4.20e-110 | 343 |
| MS.gene75009.t1 | MTR_4g022330 | 37.058 | 537 | 301 | 10 | 28 | 545 | 36 | 554 | 7.41e-110 | 341 |
| MS.gene75009.t1 | MTR_8g090220 | 33.679 | 579 | 321 | 13 | 15 | 552 | 41 | 597 | 1.77e-106 | 333 |
| MS.gene75009.t1 | MTR_1g106430 | 35.501 | 569 | 312 | 14 | 1 | 537 | 1 | 546 | 2.20e-106 | 332 |
| MS.gene75009.t1 | MTR_5g016060 | 34.615 | 546 | 306 | 10 | 20 | 543 | 34 | 550 | 1.00e-105 | 331 |
| MS.gene75009.t1 | MTR_3g062540 | 38.495 | 465 | 265 | 8 | 20 | 482 | 18 | 463 | 5.56e-105 | 327 |
| MS.gene75009.t1 | MTR_5g015790 | 39.139 | 511 | 251 | 11 | 1 | 479 | 1 | 483 | 1.14e-104 | 328 |
| MS.gene75009.t1 | MTR_8g090220 | 36.531 | 490 | 269 | 10 | 15 | 480 | 41 | 512 | 5.97e-104 | 323 |
| MS.gene75009.t1 | MTR_1g088885 | 35.420 | 559 | 310 | 11 | 15 | 545 | 26 | 561 | 5.29e-103 | 323 |
| MS.gene75009.t1 | MTR_1g014070 | 38.264 | 507 | 264 | 12 | 1 | 478 | 1 | 487 | 5.71e-103 | 323 |
| MS.gene75009.t1 | MTR_8g078900 | 39.309 | 463 | 220 | 10 | 17 | 428 | 11 | 463 | 9.92e-101 | 313 |
| MS.gene75009.t1 | MTR_7g108290 | 35.472 | 561 | 310 | 13 | 15 | 545 | 26 | 564 | 2.13e-98 | 313 |
| MS.gene75009.t1 | MTR_2g084595 | 36.569 | 443 | 247 | 7 | 13 | 428 | 10 | 445 | 2.23e-96 | 301 |
| MS.gene75009.t1 | MTR_3g062540 | 38.041 | 439 | 251 | 8 | 46 | 482 | 2 | 421 | 1.21e-95 | 301 |
| MS.gene75009.t1 | MTR_5g075640 | 35.699 | 479 | 285 | 8 | 15 | 486 | 15 | 477 | 3.03e-94 | 300 |
| MS.gene75009.t1 | MTR_4g095430 | 34.433 | 485 | 277 | 7 | 20 | 484 | 7 | 470 | 3.31e-93 | 297 |
| MS.gene75009.t1 | MTR_8g069330 | 35.912 | 543 | 292 | 12 | 1 | 513 | 1 | 517 | 7.69e-93 | 296 |
| MS.gene75009.t1 | MTR_4g093850 | 34.810 | 474 | 253 | 8 | 5 | 428 | 23 | 490 | 7.25e-89 | 284 |
| MS.gene75009.t1 | MTR_8g078900 | 40.103 | 389 | 188 | 7 | 74 | 428 | 46 | 423 | 5.38e-88 | 278 |
| MS.gene75009.t1 | MTR_4g134210 | 33.065 | 496 | 290 | 10 | 1 | 477 | 1 | 473 | 8.86e-87 | 281 |
| MS.gene75009.t1 | MTR_5g075640 | 35.491 | 448 | 267 | 7 | 46 | 486 | 2 | 434 | 3.92e-85 | 275 |
| MS.gene75009.t1 | MTR_1g082690 | 30.833 | 480 | 296 | 9 | 10 | 486 | 42 | 488 | 1.59e-80 | 263 |
| MS.gene75009.t1 | MTR_5g016060 | 33.117 | 462 | 260 | 9 | 104 | 543 | 2 | 436 | 2.87e-76 | 251 |
| MS.gene75009.t1 | MTR_2g027410 | 31.365 | 491 | 295 | 9 | 1 | 477 | 1 | 463 | 3.82e-75 | 249 |
| MS.gene75009.t1 | MTR_4g011530 | 31.937 | 382 | 228 | 6 | 186 | 557 | 42 | 401 | 9.40e-62 | 210 |
| MS.gene75009.t1 | MTR_2g102730 | 32.884 | 371 | 202 | 7 | 190 | 545 | 24 | 362 | 1.07e-59 | 204 |
| MS.gene75009.t1 | MTR_2g027410 | 30.935 | 417 | 248 | 8 | 75 | 477 | 1 | 391 | 2.61e-58 | 202 |
| MS.gene75009.t1 | MTR_4g045767 | 28.164 | 561 | 311 | 18 | 35 | 547 | 14 | 530 | 1.13e-56 | 199 |
| MS.gene75009.t1 | MTR_1g035720 | 25.394 | 571 | 319 | 14 | 29 | 544 | 6 | 524 | 1.53e-46 | 171 |
| MS.gene75009.t1 | MTR_4g074190 | 27.745 | 501 | 284 | 13 | 27 | 483 | 4 | 470 | 3.32e-45 | 168 |
| MS.gene75009.t1 | MTR_4g074190 | 28.509 | 456 | 250 | 11 | 70 | 483 | 3 | 424 | 4.37e-44 | 164 |
| MS.gene75009.t1 | MTR_4g074190 | 26.339 | 448 | 252 | 13 | 27 | 430 | 4 | 417 | 7.95e-34 | 134 |
| MS.gene75009.t1 | MTR_2g048375 | 51.145 | 131 | 51 | 3 | 445 | 562 | 1 | 131 | 7.13e-32 | 121 |
| MS.gene75009.t1 | MTR_1g105870 | 34.973 | 183 | 112 | 2 | 34 | 209 | 39 | 221 | 1.55e-30 | 120 |
| MS.gene75009.t1 | MTR_2g010890 | 25.780 | 481 | 273 | 15 | 94 | 543 | 1 | 428 | 6.25e-24 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75009.t1 | AT5G03250 | 59.022 | 593 | 198 | 11 | 1 | 562 | 1 | 579 | 0.0 | 707 |
| MS.gene75009.t1 | AT5G13600 | 52.462 | 589 | 236 | 10 | 1 | 563 | 1 | 571 | 0.0 | 587 |
| MS.gene75009.t1 | AT1G30440 | 49.251 | 601 | 245 | 9 | 1 | 549 | 1 | 593 | 0.0 | 576 |
| MS.gene75009.t1 | AT5G03250 | 57.380 | 481 | 160 | 11 | 113 | 562 | 1 | 467 | 0.0 | 543 |
| MS.gene75009.t1 | AT3G44820 | 38.345 | 592 | 313 | 10 | 13 | 556 | 10 | 597 | 3.12e-137 | 413 |
| MS.gene75009.t1 | AT5G66560 | 37.323 | 635 | 271 | 11 | 17 | 545 | 10 | 623 | 9.90e-128 | 389 |
| MS.gene75009.t1 | AT5G66560 | 36.808 | 614 | 261 | 11 | 38 | 545 | 2 | 594 | 1.30e-118 | 365 |
| MS.gene75009.t1 | AT3G50840 | 38.919 | 555 | 286 | 10 | 23 | 552 | 13 | 539 | 1.69e-117 | 359 |
| MS.gene75009.t1 | AT5G66560 | 39.444 | 540 | 242 | 10 | 70 | 545 | 66 | 584 | 3.88e-117 | 360 |
| MS.gene75009.t1 | AT5G48800 | 36.991 | 565 | 286 | 11 | 28 | 555 | 43 | 574 | 8.48e-110 | 341 |
| MS.gene75009.t1 | AT5G67385 | 36.025 | 483 | 273 | 6 | 20 | 486 | 19 | 481 | 3.84e-106 | 331 |
| MS.gene75009.t1 | AT3G50840 | 38.403 | 526 | 270 | 10 | 54 | 552 | 5 | 503 | 4.82e-106 | 329 |
| MS.gene75009.t1 | AT3G50840 | 38.403 | 526 | 270 | 10 | 54 | 552 | 5 | 503 | 4.82e-106 | 329 |
| MS.gene75009.t1 | AT3G08570 | 35.490 | 541 | 309 | 10 | 26 | 547 | 34 | 553 | 1.17e-104 | 328 |
| MS.gene75009.t1 | AT2G47860 | 36.000 | 550 | 303 | 12 | 23 | 545 | 34 | 561 | 1.25e-104 | 328 |
| MS.gene75009.t1 | AT1G03010 | 36.462 | 554 | 304 | 12 | 24 | 545 | 7 | 544 | 5.72e-104 | 326 |
| MS.gene75009.t1 | AT1G03010 | 36.234 | 563 | 310 | 13 | 15 | 545 | 26 | 571 | 9.26e-104 | 326 |
| MS.gene75009.t1 | AT1G03010 | 36.219 | 566 | 308 | 14 | 16 | 545 | 22 | 570 | 1.50e-103 | 325 |
| MS.gene75009.t1 | AT1G67900 | 37.452 | 518 | 276 | 9 | 1 | 479 | 1 | 509 | 2.14e-100 | 317 |
| MS.gene75009.t1 | AT1G67900 | 37.452 | 518 | 276 | 9 | 1 | 479 | 1 | 509 | 2.14e-100 | 317 |
| MS.gene75009.t1 | AT1G67900 | 37.452 | 518 | 276 | 9 | 1 | 479 | 1 | 509 | 2.14e-100 | 317 |
| MS.gene75009.t1 | AT1G67900 | 37.452 | 518 | 276 | 9 | 1 | 479 | 1 | 509 | 2.14e-100 | 317 |
| MS.gene75009.t1 | AT1G67900 | 37.452 | 518 | 276 | 9 | 1 | 479 | 1 | 509 | 2.14e-100 | 317 |
| MS.gene75009.t1 | AT1G67900 | 37.452 | 518 | 276 | 9 | 1 | 479 | 1 | 509 | 2.14e-100 | 317 |
| MS.gene75009.t1 | AT2G30520 | 36.364 | 484 | 289 | 8 | 4 | 485 | 9 | 475 | 6.05e-100 | 315 |
| MS.gene75009.t1 | AT3G08660 | 34.124 | 548 | 297 | 15 | 26 | 549 | 34 | 541 | 1.34e-99 | 313 |
| MS.gene75009.t1 | AT2G47860 | 34.555 | 573 | 303 | 13 | 23 | 545 | 34 | 584 | 1.59e-99 | 316 |
| MS.gene75009.t1 | AT4G37590 | 37.187 | 519 | 246 | 14 | 1 | 486 | 1 | 472 | 2.56e-98 | 310 |
| MS.gene75009.t1 | AT2G14820 | 36.576 | 514 | 279 | 13 | 1 | 486 | 1 | 495 | 2.18e-96 | 307 |
| MS.gene75009.t1 | AT2G14820 | 36.576 | 514 | 279 | 13 | 1 | 486 | 1 | 495 | 2.18e-96 | 307 |
| MS.gene75009.t1 | AT5G10250 | 32.513 | 569 | 322 | 13 | 13 | 549 | 37 | 575 | 3.24e-96 | 306 |
| MS.gene75009.t1 | AT4G31820 | 35.742 | 512 | 260 | 12 | 1 | 483 | 1 | 472 | 6.85e-94 | 298 |
| MS.gene75009.t1 | AT5G67440 | 36.346 | 509 | 273 | 13 | 1 | 485 | 1 | 482 | 5.09e-93 | 296 |
| MS.gene75009.t1 | AT5G67440 | 36.346 | 509 | 273 | 13 | 1 | 485 | 1 | 482 | 5.09e-93 | 296 |
| MS.gene75009.t1 | AT5G67385 | 34.649 | 456 | 262 | 6 | 47 | 486 | 1 | 436 | 2.72e-92 | 294 |
| MS.gene75009.t1 | AT5G67385 | 34.649 | 456 | 262 | 6 | 47 | 486 | 1 | 436 | 2.72e-92 | 294 |
| MS.gene75009.t1 | AT5G67385 | 34.649 | 456 | 262 | 6 | 47 | 486 | 1 | 436 | 2.72e-92 | 294 |
| MS.gene75009.t1 | AT5G67385 | 34.649 | 456 | 262 | 6 | 47 | 486 | 1 | 436 | 2.72e-92 | 294 |
| MS.gene75009.t1 | AT5G10250 | 32.379 | 559 | 321 | 13 | 13 | 549 | 37 | 560 | 1.64e-91 | 293 |
| MS.gene75009.t1 | AT2G23050 | 35.827 | 508 | 255 | 12 | 1 | 487 | 1 | 458 | 2.00e-91 | 289 |
| MS.gene75009.t1 | AT5G66560 | 36.253 | 491 | 213 | 9 | 17 | 428 | 10 | 479 | 1.85e-90 | 286 |
| MS.gene75009.t1 | AT2G30520 | 36.199 | 442 | 264 | 7 | 46 | 485 | 2 | 427 | 1.57e-89 | 286 |
| MS.gene75009.t1 | AT2G30520 | 36.199 | 442 | 264 | 7 | 46 | 485 | 2 | 427 | 1.57e-89 | 286 |
| MS.gene75009.t1 | AT3G08660 | 33.858 | 508 | 275 | 14 | 66 | 549 | 11 | 481 | 3.72e-89 | 285 |
| MS.gene75009.t1 | AT3G26490 | 33.942 | 548 | 289 | 12 | 1 | 500 | 1 | 523 | 4.48e-88 | 284 |
| MS.gene75009.t1 | AT3G26490 | 33.942 | 548 | 289 | 12 | 1 | 500 | 1 | 523 | 4.48e-88 | 284 |
| MS.gene75009.t1 | AT3G26490 | 33.942 | 548 | 289 | 12 | 1 | 500 | 1 | 523 | 4.48e-88 | 284 |
| MS.gene75009.t1 | AT5G67440 | 35.684 | 468 | 251 | 12 | 41 | 485 | 5 | 445 | 3.08e-82 | 267 |
| MS.gene75009.t1 | AT5G47800 | 30.629 | 493 | 307 | 9 | 1 | 477 | 1 | 474 | 1.28e-78 | 258 |
| MS.gene75009.t1 | AT5G47800 | 30.629 | 493 | 307 | 9 | 1 | 477 | 1 | 474 | 1.28e-78 | 258 |
| MS.gene75009.t1 | AT5G47800 | 30.629 | 493 | 307 | 9 | 1 | 477 | 1 | 474 | 1.28e-78 | 258 |
| MS.gene75009.t1 | AT3G49970 | 34.186 | 430 | 237 | 9 | 38 | 463 | 6 | 393 | 9.63e-78 | 254 |
| MS.gene75009.t1 | AT3G49970 | 34.186 | 430 | 237 | 9 | 38 | 463 | 6 | 393 | 9.63e-78 | 254 |
| MS.gene75009.t1 | AT5G47800 | 30.629 | 493 | 307 | 9 | 1 | 477 | 114 | 587 | 2.74e-77 | 257 |
| MS.gene75009.t1 | AT2G47860 | 35.431 | 429 | 235 | 10 | 23 | 428 | 34 | 443 | 2.65e-76 | 249 |
| MS.gene75009.t1 | AT4G31820 | 34.793 | 434 | 217 | 10 | 74 | 479 | 20 | 415 | 6.28e-75 | 247 |
| MS.gene75009.t1 | AT2G47860 | 33.913 | 460 | 260 | 11 | 113 | 545 | 1 | 443 | 1.13e-72 | 241 |
| MS.gene75009.t1 | AT2G47860 | 33.913 | 460 | 260 | 11 | 113 | 545 | 1 | 443 | 1.13e-72 | 241 |
| MS.gene75009.t1 | AT3G08660 | 33.489 | 427 | 233 | 12 | 24 | 435 | 32 | 422 | 2.90e-71 | 235 |
| MS.gene75009.t1 | AT2G47860 | 33.628 | 452 | 235 | 11 | 23 | 428 | 34 | 466 | 3.16e-71 | 236 |
| MS.gene75009.t1 | AT3G26490 | 32.265 | 499 | 262 | 13 | 1 | 443 | 1 | 479 | 1.73e-65 | 222 |
| MS.gene75009.t1 | AT1G52770 | 33.247 | 388 | 224 | 7 | 190 | 561 | 28 | 396 | 5.00e-64 | 216 |
| MS.gene75009.t1 | AT3G15570 | 32.908 | 392 | 220 | 8 | 190 | 561 | 29 | 397 | 8.64e-59 | 202 |
| MS.gene75009.t1 | AT5G64330 | 43.154 | 241 | 124 | 1 | 259 | 486 | 313 | 553 | 1.22e-56 | 200 |
| MS.gene75009.t1 | AT5G64330 | 36.638 | 232 | 107 | 4 | 39 | 232 | 6 | 235 | 1.02e-39 | 153 |
| MS.gene75009.t1 | AT2G23050 | 33.418 | 392 | 194 | 9 | 113 | 487 | 1 | 342 | 1.56e-56 | 194 |
| MS.gene75009.t1 | AT5G64330 | 43.154 | 241 | 124 | 1 | 259 | 486 | 372 | 612 | 3.70e-56 | 200 |
| MS.gene75009.t1 | AT5G64330 | 37.121 | 264 | 126 | 4 | 7 | 232 | 33 | 294 | 4.44e-50 | 183 |
| MS.gene75009.t1 | AT5G64330 | 43.154 | 241 | 124 | 1 | 259 | 486 | 372 | 612 | 3.75e-56 | 201 |
| MS.gene75009.t1 | AT5G64330 | 37.121 | 264 | 126 | 4 | 7 | 232 | 33 | 294 | 1.11e-49 | 183 |
| MS.gene75009.t1 | AT3G03510 | 30.244 | 410 | 230 | 8 | 82 | 485 | 8 | 367 | 2.34e-51 | 182 |
| MS.gene75009.t1 | AT5G48130 | 27.961 | 515 | 289 | 14 | 19 | 505 | 32 | 492 | 1.27e-49 | 181 |
| MS.gene75009.t1 | AT3G19850 | 25.956 | 497 | 289 | 11 | 26 | 478 | 3 | 464 | 4.59e-49 | 179 |
| MS.gene75009.t1 | AT5G17580 | 26.804 | 485 | 295 | 9 | 23 | 485 | 2 | 448 | 1.19e-46 | 172 |
| MS.gene75009.t1 | AT5G17580 | 26.804 | 485 | 295 | 9 | 23 | 485 | 17 | 463 | 1.29e-46 | 172 |
| MS.gene75009.t1 | AT3G22104 | 27.813 | 471 | 258 | 13 | 22 | 464 | 4 | 420 | 1.61e-46 | 171 |
| MS.gene75009.t1 | AT1G50280 | 26.819 | 481 | 277 | 11 | 35 | 473 | 13 | 460 | 4.32e-43 | 161 |
| MS.gene75009.t1 | AT1G50280 | 27.088 | 443 | 251 | 10 | 70 | 473 | 18 | 427 | 2.10e-41 | 156 |
| MS.gene75009.t1 | AT3G22104 | 26.904 | 394 | 211 | 10 | 98 | 464 | 2 | 345 | 4.04e-31 | 126 |
| MS.gene75009.t1 | AT3G22104 | 26.904 | 394 | 211 | 10 | 98 | 464 | 2 | 345 | 4.04e-31 | 126 |
| MS.gene75009.t1 | AT3G22104 | 26.904 | 394 | 211 | 10 | 98 | 464 | 2 | 345 | 4.04e-31 | 126 |
| MS.gene75009.t1 | AT3G49900 | 34.615 | 156 | 89 | 6 | 18 | 167 | 57 | 205 | 1.39e-11 | 67.4 |
| MS.gene75009.t1 | AT3G49900 | 34.615 | 156 | 89 | 6 | 18 | 167 | 57 | 205 | 1.49e-11 | 67.4 |
Find 85 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCATGCATAGAAAATT+TGG | 0.155376 | 1.4:-52791420 | MS.gene75009:CDS |
| ACTTCACAAAGTGCAAATTT+TGG | 0.206287 | 1.4:-52790209 | MS.gene75009:CDS |
| TCAACTGAATATCCCATATT+TGG | 0.208718 | 1.4:+52791344 | None:intergenic |
| CTTAGACTAACCACATTTAA+TGG | 0.227040 | 1.4:+52792016 | None:intergenic |
| TTTCTTCTAAAGAAAATTCT+TGG | 0.248825 | 1.4:+52790035 | None:intergenic |
| AGGAAATCAAAGGGCATTAT+TGG | 0.252444 | 1.4:-52791537 | MS.gene75009:CDS |
| CATCATTAATATATTATCTT+AGG | 0.256645 | 1.4:-52791646 | MS.gene75009:CDS |
| TTACAAATGAATGAAAATTA+TGG | 0.278342 | 1.4:-52791977 | MS.gene75009:CDS |
| TGCTACAGGGTTTGTACAAC+TGG | 0.331219 | 1.4:-52792539 | MS.gene75009:intron |
| GGAGTAGTTGATGTTGTTCC+AGG | 0.353890 | 1.4:+52791260 | None:intergenic |
| ACTACTCCATTATGTATAAC+TGG | 0.355235 | 1.4:-52791245 | MS.gene75009:CDS |
| GACAATTGTGGCTAATTTGT+TGG | 0.360833 | 1.4:-52791180 | MS.gene75009:CDS |
| CCTTCTCCAGTTATACATAA+TGG | 0.382336 | 1.4:+52791239 | None:intergenic |
| GCATAGAAAATTTGGAGAAA+AGG | 0.389239 | 1.4:-52791412 | MS.gene75009:CDS |
| ATCCTCGGAACATGCCTTGA+TGG | 0.392643 | 1.4:+52791805 | None:intergenic |
| AATGATGCAGCAACATTCTC+AGG | 0.395320 | 1.4:+52791662 | None:intergenic |
| CATAGAAAATTTGGAGAAAA+GGG | 0.402624 | 1.4:-52791411 | MS.gene75009:CDS |
| TGCTATTGATGTATACCTTA+AGG | 0.402665 | 1.4:-52791045 | MS.gene75009:intron |
| GCATTATTGGAAGAAATTGT+AGG | 0.405381 | 1.4:-52791524 | MS.gene75009:CDS |
| ACACCAAGTAGAAGTTTAGA+AGG | 0.417642 | 1.4:-52791557 | MS.gene75009:CDS |
| TCCAATGGCCTAGCATAATC+AGG | 0.417891 | 1.4:+52791083 | None:intergenic |
| TTCGTACATCAATTTCTAGT+TGG | 0.419163 | 1.4:-52790256 | MS.gene75009:CDS |
| TTTGGATTCTCAAGGAGTAA+TGG | 0.443429 | 1.4:-52790191 | MS.gene75009:CDS |
| TAAATGGCATTGTTGAAGCT+TGG | 0.453776 | 1.4:-52792744 | MS.gene75009:CDS |
| ATTGTATCAATTGAATCAAA+AGG | 0.455614 | 1.4:-52791692 | MS.gene75009:CDS |
| TACCTTCTAAATATCTCCTT+AGG | 0.462829 | 1.4:-52791475 | MS.gene75009:CDS |
| GAAAATTTGGAGAAAAGGGT+TGG | 0.465484 | 1.4:-52791407 | MS.gene75009:CDS |
| TTTCCATTGCTTTCTAGAAG+TGG | 0.467653 | 1.4:-52792178 | MS.gene75009:CDS |
| AAGCTGACTAAAACTAAGAA+AGG | 0.469100 | 1.4:-52790071 | MS.gene75009:CDS |
| GGAACATGCCTTGATGGTTA+AGG | 0.470939 | 1.4:+52791811 | None:intergenic |
| TGCATCAACTCCACCAATCA+AGG | 0.474680 | 1.4:+52791214 | None:intergenic |
| CATTATTGGAAGAAATTGTA+GGG | 0.475629 | 1.4:-52791523 | MS.gene75009:CDS |
| CTTTCTGAATCTATTAGCCA+TGG | 0.477232 | 1.4:+52790404 | None:intergenic |
| TGACTAAAACTAAGAAAGGT+TGG | 0.477655 | 1.4:-52790067 | MS.gene75009:CDS |
| AACCTAAGGAGATATTTAGA+AGG | 0.481256 | 1.4:+52791473 | None:intergenic |
| TCCTGATTATGCTAGGCCAT+TGG | 0.481839 | 1.4:-52791084 | MS.gene75009:CDS |
| GCTGACTCTACAAATGAAGA+TGG | 0.482347 | 1.4:-52792136 | MS.gene75009:CDS |
| CATTGATTCCTTAACCATCA+AGG | 0.484557 | 1.4:-52791819 | MS.gene75009:CDS |
| AAATTAGCCACAATTGTCAT+AGG | 0.488288 | 1.4:+52791185 | None:intergenic |
| TTCTCAAGGAGTAATGGAAA+TGG | 0.489689 | 1.4:-52790185 | MS.gene75009:CDS |
| GCAGCAAGAGATTGAAACTT+AGG | 0.490656 | 1.4:+52791113 | None:intergenic |
| CACAAGCTTCAAGTGATGAT+TGG | 0.491149 | 1.4:-52791763 | MS.gene75009:CDS |
| TTTCCTTCTAAACTTCTACT+TGG | 0.493969 | 1.4:+52791554 | None:intergenic |
| CTTCAATTCCTGATTATGCT+AGG | 0.500244 | 1.4:-52791091 | MS.gene75009:CDS |
| ACTGGAGAAGGATCCTTGAT+TGG | 0.500424 | 1.4:-52791227 | MS.gene75009:CDS |
| CATGGCTAATAGATTCAGAA+AGG | 0.514633 | 1.4:-52790403 | MS.gene75009:CDS |
| GAAGTTTAGAAGGAAATCAA+AGG | 0.518783 | 1.4:-52791547 | MS.gene75009:CDS |
| TTGCACTTTGTGAAGTCTCA+AGG | 0.519032 | 1.4:+52790216 | None:intergenic |
| TATGCTAGGCCATTGGATGA+TGG | 0.527344 | 1.4:-52791077 | MS.gene75009:CDS |
| TGAATGAAAATTATGGTGAA+AGG | 0.536604 | 1.4:-52791970 | MS.gene75009:CDS |
| GTGATGTTACCATTGCAGTA+GGG | 0.537044 | 1.4:-52792508 | MS.gene75009:CDS |
| CTTGATTGTCTATTCATCAA+AGG | 0.542005 | 1.4:+52791614 | None:intergenic |
| TAGCTGTTCTTAGCAACCTA+AGG | 0.543253 | 1.4:+52791459 | None:intergenic |
| ACAAGGTGGTGAAAACTTGA+GGG | 0.545706 | 1.4:-52790147 | MS.gene75009:CDS |
| GGAGAAGGATCCTTGATTGG+TGG | 0.545909 | 1.4:-52791224 | MS.gene75009:CDS |
| TTACAACTTCATGATGTACC+TGG | 0.555478 | 1.4:-52792100 | MS.gene75009:CDS |
| GTCAATTGTAGGCACATCCA+TGG | 0.560445 | 1.4:-52790421 | MS.gene75009:intron |
| CCATTATGTATAACTGGAGA+AGG | 0.561165 | 1.4:-52791239 | MS.gene75009:CDS |
| TCTGATATATTTCGTCGTGA+TGG | 0.561374 | 1.4:-52792714 | MS.gene75009:CDS |
| CACAAGGTGGTGAAAACTTG+AGG | 0.568143 | 1.4:-52790148 | MS.gene75009:CDS |
| AGTGATGTTACCATTGCAGT+AGG | 0.569613 | 1.4:-52792509 | MS.gene75009:CDS |
| TGATGTTACCATTGCAGTAG+GGG | 0.570086 | 1.4:-52792507 | MS.gene75009:CDS |
| GACAAAACTAGTGTTAGTCA+AGG | 0.571383 | 1.4:-52791584 | MS.gene75009:CDS |
| TGATGTTTCCCCTACTGCAA+TGG | 0.578219 | 1.4:+52792499 | None:intergenic |
| ATGGCTAATAGATTCAGAAA+GGG | 0.578790 | 1.4:-52790402 | MS.gene75009:CDS |
| GGATGCATATCTTGCTGAGG+TGG | 0.586152 | 1.4:-52791159 | MS.gene75009:CDS |
| AAGCTTCAAGTGATGATTGG+TGG | 0.586288 | 1.4:-52791760 | MS.gene75009:CDS |
| AAGTTTAGAAGGAAATCAAA+GGG | 0.591610 | 1.4:-52791546 | MS.gene75009:CDS |
| AACCATCAAGGCATGTTCCG+AGG | 0.595842 | 1.4:-52791807 | MS.gene75009:CDS |
| AATCCACTTCTAGAAAGCAA+TGG | 0.597726 | 1.4:+52792175 | None:intergenic |
| GTTGGATGCATATCTTGCTG+AGG | 0.610750 | 1.4:-52791162 | MS.gene75009:CDS |
| ACCACTGAGAGTAATAGTGC+AGG | 0.612486 | 1.4:-52790303 | MS.gene75009:CDS |
| TGATATAAACCATCATCCAA+TGG | 0.612736 | 1.4:+52791068 | None:intergenic |
| GCTTGATGAAGTTGAGCTTG+TGG | 0.619567 | 1.4:-52791378 | MS.gene75009:CDS |
| ACCTGCACTATTACTCTCAG+TGG | 0.620285 | 1.4:+52790302 | None:intergenic |
| TTTATGTCAATGTATCAACC+TGG | 0.620633 | 1.4:-52791278 | MS.gene75009:CDS |
| AGAAATCACACCATTAAATG+TGG | 0.630366 | 1.4:-52792026 | MS.gene75009:CDS |
| ACAAAACTAGTGTTAGTCAA+GGG | 0.633780 | 1.4:-52791583 | MS.gene75009:CDS |
| GAGTAATGGAAATGGTCAAG+TGG | 0.635636 | 1.4:-52790177 | MS.gene75009:CDS |
| CAACTTCATGATGTACCTGG+TGG | 0.640051 | 1.4:-52792097 | MS.gene75009:CDS |
| TTCGTCGTGATGGCCACACA+TGG | 0.641113 | 1.4:-52792704 | MS.gene75009:intron |
| GGTCAAGTGGACCCTACACA+AGG | 0.652910 | 1.4:-52790164 | MS.gene75009:CDS |
| TCGTGTATCAGAGCTAGAGA+AGG | 0.660514 | 1.4:-52790123 | MS.gene75009:CDS |
| ATTGACACCTATGACAATTG+TGG | 0.686575 | 1.4:-52791192 | MS.gene75009:CDS |
| CAAGTGGACCCTACACAAGG+TGG | 0.706968 | 1.4:-52790161 | MS.gene75009:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATCATTAATATATTATCTT+AGG | - | chr1.4:52791120-52791139 | MS.gene75009:CDS | 15.0% |
| !! | TTACAAATGAATGAAAATTA+TGG | - | chr1.4:52790789-52790808 | MS.gene75009:intron | 15.0% |
| !!! | ACAATAAGTCTTTTATATAA+AGG | + | chr1.4:52791059-52791078 | None:intergenic | 15.0% |
| !!! | CAAATAGTTTTTCTAATTAA+TGG | - | chr1.4:52790171-52790190 | MS.gene75009:CDS | 15.0% |
| !! | ATTCATTTCGACTAAATATT+TGG | + | chr1.4:52792068-52792087 | None:intergenic | 20.0% |
| !! | ATTGTATCAATTGAATCAAA+AGG | - | chr1.4:52791074-52791093 | MS.gene75009:CDS | 20.0% |
| !! | TCAAAATTACATAAAGATCA+TGG | + | chr1.4:52790554-52790573 | None:intergenic | 20.0% |
| !! | TTAGAAAAAATTGCAACAAA+CGG | + | chr1.4:52790399-52790418 | None:intergenic | 20.0% |
| !!! | ACATGGTAAGAATATTTTTT+AGG | - | chr1.4:52790079-52790098 | MS.gene75009:CDS | 20.0% |
| !!! | AGAAATTTTATGTCAATTGT+AGG | - | chr1.4:52792334-52792353 | MS.gene75009:intron | 20.0% |
| !!! | CAATAGTATTTCTAAATTGA+CGG | - | chr1.4:52791952-52791971 | MS.gene75009:CDS | 20.0% |
| !!! | CATTAAAGTATTACAGTATA+TGG | - | chr1.4:52791872-52791891 | MS.gene75009:CDS | 20.0% |
| !!! | CTGAATTTGAATTTTGAATT+AGG | - | chr1.4:52791756-52791775 | MS.gene75009:CDS | 20.0% |
| !!! | GATATTTTGATTCCAAATAT+GGG | - | chr1.4:52791410-52791429 | MS.gene75009:CDS | 20.0% |
| !!! | TTTCTTCTAAAGAAAATTCT+TGG | + | chr1.4:52792734-52792753 | None:intergenic | 20.0% |
| ! | AAAAATATTCTTACCATGTG+TGG | + | chr1.4:52790078-52790097 | None:intergenic | 25.0% |
| ! | AAGTTTAGAAGGAAATCAAA+GGG | - | chr1.4:52791220-52791239 | MS.gene75009:CDS | 25.0% |
| ! | ATGATAAGCAAACACAAAAT+AGG | - | chr1.4:52790487-52790506 | MS.gene75009:intron | 25.0% |
| ! | CATAGAAAATTTGGAGAAAA+GGG | - | chr1.4:52791355-52791374 | MS.gene75009:CDS | 25.0% |
| ! | CATTATTGGAAGAAATTGTA+GGG | - | chr1.4:52791243-52791262 | MS.gene75009:CDS | 25.0% |
| ! | GAAAAAAGTTACGTTCAAAT+AGG | - | chr1.4:52790143-52790162 | MS.gene75009:CDS | 25.0% |
| ! | TGAATGAAAATTATGGTGAA+AGG | - | chr1.4:52790796-52790815 | MS.gene75009:intron | 25.0% |
| ! | TTCATCATGCATAGAAAATT+TGG | - | chr1.4:52791346-52791365 | MS.gene75009:CDS | 25.0% |
| ! | TTCTCAAAAATCAGTTTCAA+TGG | - | chr1.4:52790435-52790454 | MS.gene75009:intron | 25.0% |
| !! | ATCATAACAAAGTTTTGCTA+TGG | - | chr1.4:52790708-52790727 | MS.gene75009:intron | 25.0% |
| !! | ATCATATTTTATCTTGCTAC+AGG | - | chr1.4:52790213-52790232 | MS.gene75009:CDS | 25.0% |
| !! | TCATATTTTATCTTGCTACA+GGG | - | chr1.4:52790214-52790233 | MS.gene75009:CDS | 25.0% |
| !!! | GGATATTTTGATTCCAAATA+TGG | - | chr1.4:52791409-52791428 | MS.gene75009:CDS | 25.0% |
| !!! | GGTATGACACTTTTTTTATT+AGG | + | chr1.4:52791275-52791294 | None:intergenic | 25.0% |
| !!! | TACTTTAGGGACTAAATTTT+AGG | - | chr1.4:52791983-52792002 | MS.gene75009:CDS | 25.0% |
| AAATTAGCCACAATTGTCAT+AGG | + | chr1.4:52791584-52791603 | None:intergenic | 30.0% | |
| AACCTAAGGAGATATTTAGA+AGG | + | chr1.4:52791296-52791315 | None:intergenic | 30.0% | |
| AAGCTGACTAAAACTAAGAA+AGG | - | chr1.4:52792695-52792714 | MS.gene75009:intron | 30.0% | |
| ACAAAACTAGTGTTAGTCAA+GGG | - | chr1.4:52791183-52791202 | MS.gene75009:CDS | 30.0% | |
| ACTACTCCATTATGTATAAC+TGG | - | chr1.4:52791521-52791540 | MS.gene75009:CDS | 30.0% | |
| AGAAATCACACCATTAAATG+TGG | - | chr1.4:52790740-52790759 | MS.gene75009:intron | 30.0% | |
| ATGAAACACTCAAACCAATA+TGG | - | chr1.4:52792124-52792143 | MS.gene75009:CDS | 30.0% | |
| ATGGCTAATAGATTCAGAAA+GGG | - | chr1.4:52792364-52792383 | MS.gene75009:intron | 30.0% | |
| CTTAGACTAACCACATTTAA+TGG | + | chr1.4:52790753-52790772 | None:intergenic | 30.0% | |
| CTTGATTGTCTATTCATCAA+AGG | + | chr1.4:52791155-52791174 | None:intergenic | 30.0% | |
| GAAGTTTAGAAGGAAATCAA+AGG | - | chr1.4:52791219-52791238 | MS.gene75009:CDS | 30.0% | |
| GCATAGAAAATTTGGAGAAA+AGG | - | chr1.4:52791354-52791373 | MS.gene75009:CDS | 30.0% | |
| GCATTATTGGAAGAAATTGT+AGG | - | chr1.4:52791242-52791261 | MS.gene75009:CDS | 30.0% | |
| TACCTTCTAAATATCTCCTT+AGG | - | chr1.4:52791291-52791310 | MS.gene75009:CDS | 30.0% | |
| TCAACTGAATATCCCATATT+TGG | + | chr1.4:52791425-52791444 | None:intergenic | 30.0% | |
| TGACTAAAACTAAGAAAGGT+TGG | - | chr1.4:52792699-52792718 | MS.gene75009:intron | 30.0% | |
| TGATATAAACCATCATCCAA+TGG | + | chr1.4:52791701-52791720 | None:intergenic | 30.0% | |
| TGCTATTGATGTATACCTTA+AGG | - | chr1.4:52791721-52791740 | MS.gene75009:CDS | 30.0% | |
| TTTATGTCAATGTATCAACC+TGG | - | chr1.4:52791488-52791507 | MS.gene75009:CDS | 30.0% | |
| TTTCCTTCTAAACTTCTACT+TGG | + | chr1.4:52791215-52791234 | None:intergenic | 30.0% | |
| ! | ACTTCACAAAGTGCAAATTT+TGG | - | chr1.4:52792557-52792576 | MS.gene75009:intron | 30.0% |
| ! | GACGGACTTTATATACTTTA+GGG | - | chr1.4:52791970-52791989 | MS.gene75009:CDS | 30.0% |
| !! | TGACGGACTTTATATACTTT+AGG | - | chr1.4:52791969-52791988 | MS.gene75009:CDS | 30.0% |
| !! | TTCGTACATCAATTTCTAGT+TGG | - | chr1.4:52792510-52792529 | MS.gene75009:CDS | 30.0% |
| !!! | AACATCATTTTTTCTCCACA+AGG | - | chr1.4:52790283-52790302 | MS.gene75009:CDS | 30.0% |
| ACACCAAGTAGAAGTTTAGA+AGG | - | chr1.4:52791209-52791228 | MS.gene75009:CDS | 35.0% | |
| AGATGAGTACAAGTGAAATG+AGG | + | chr1.4:52792289-52792308 | None:intergenic | 35.0% | |
| AGTACAAGTGAAATGAGGTT+AGG | + | chr1.4:52792284-52792303 | None:intergenic | 35.0% | |
| ATGCACACACTATCTTCTTA+GGG | - | chr1.4:52790346-52790365 | MS.gene75009:CDS | 35.0% | |
| ATTGACACCTATGACAATTG+TGG | - | chr1.4:52791574-52791593 | MS.gene75009:CDS | 35.0% | |
| CATGGCTAATAGATTCAGAA+AGG | - | chr1.4:52792363-52792382 | MS.gene75009:intron | 35.0% | |
| CCATTATGTATAACTGGAGA+AGG | - | chr1.4:52791527-52791546 | MS.gene75009:CDS | 35.0% | |
| CCTTCTCCAGTTATACATAA+TGG | + | chr1.4:52791530-52791549 | None:intergenic | 35.0% | |
| CTCGTGTTAGACATCAATAT+CGG | + | chr1.4:52792226-52792245 | None:intergenic | 35.0% | |
| CTTCAATTCCTGATTATGCT+AGG | - | chr1.4:52791675-52791694 | MS.gene75009:CDS | 35.0% | |
| CTTTCTGAATCTATTAGCCA+TGG | + | chr1.4:52792365-52792384 | None:intergenic | 35.0% | |
| GAAAATTTGGAGAAAAGGGT+TGG | - | chr1.4:52791359-52791378 | MS.gene75009:CDS | 35.0% | |
| GACAAAACTAGTGTTAGTCA+AGG | - | chr1.4:52791182-52791201 | MS.gene75009:CDS | 35.0% | |
| TCTGATATATTTCGTCGTGA+TGG | - | chr1.4:52790052-52790071 | MS.gene75009:CDS | 35.0% | |
| TTACAACTTCATGATGTACC+TGG | - | chr1.4:52790666-52790685 | MS.gene75009:intron | 35.0% | |
| TTTGGATTCTCAAGGAGTAA+TGG | - | chr1.4:52792575-52792594 | MS.gene75009:intron | 35.0% | |
| ! | AATCCACTTCTAGAAAGCAA+TGG | + | chr1.4:52790594-52790613 | None:intergenic | 35.0% |
| ! | GACAATTGTGGCTAATTTGT+TGG | - | chr1.4:52791586-52791605 | MS.gene75009:CDS | 35.0% |
| ! | GTGCAAATTTTGGATTCTCA+AGG | - | chr1.4:52792567-52792586 | MS.gene75009:intron | 35.0% |
| ! | TCGATGAAGTTTTCAGCAAT+TGG | - | chr1.4:52790847-52790866 | MS.gene75009:intron | 35.0% |
| ! | TTCTCAAGGAGTAATGGAAA+TGG | - | chr1.4:52792581-52792600 | MS.gene75009:intron | 35.0% |
| ! | TTTCCACACTTTTCCTTCTA+TGG | - | chr1.4:52790372-52790391 | MS.gene75009:CDS | 35.0% |
| ! | TTTCCATTGCTTTCTAGAAG+TGG | - | chr1.4:52790588-52790607 | MS.gene75009:intron | 35.0% |
| !! | AGGAAATCAAAGGGCATTAT+TGG | - | chr1.4:52791229-52791248 | MS.gene75009:CDS | 35.0% |
| !! | CATTGATTCCTTAACCATCA+AGG | - | chr1.4:52790947-52790966 | MS.gene75009:intron | 35.0% |
| AAGCTTCAAGTGATGATTGG+TGG | - | chr1.4:52791006-52791025 | MS.gene75009:intron | 40.0% | |
| AATGATGCAGCAACATTCTC+AGG | + | chr1.4:52791107-52791126 | None:intergenic | 40.0% | |
| ACAAGGTGGTGAAAACTTGA+GGG | - | chr1.4:52792619-52792638 | MS.gene75009:intron | 40.0% | |
| AGTGATGTTACCATTGCAGT+AGG | - | chr1.4:52790257-52790276 | MS.gene75009:CDS | 40.0% | |
| AGTTTCAGCCGAAAAATCCT+CGG | + | chr1.4:52790979-52790998 | None:intergenic | 40.0% | |
| CACAAGCTTCAAGTGATGAT+TGG | - | chr1.4:52791003-52791022 | MS.gene75009:intron | 40.0% | |
| CACTCAAACCAATATGGACA+TGG | - | chr1.4:52792130-52792149 | MS.gene75009:CDS | 40.0% | |
| GAATGTTAACATGCACCTTG+TGG | + | chr1.4:52790301-52790320 | None:intergenic | 40.0% | |
| GATGCACACACTATCTTCTT+AGG | - | chr1.4:52790345-52790364 | MS.gene75009:CDS | 40.0% | |
| GCAGCAAGAGATTGAAACTT+AGG | + | chr1.4:52791656-52791675 | None:intergenic | 40.0% | |
| GTGATGTTACCATTGCAGTA+GGG | - | chr1.4:52790258-52790277 | MS.gene75009:CDS | 40.0% | |
| TAGCTGTTCTTAGCAACCTA+AGG | + | chr1.4:52791310-52791329 | None:intergenic | 40.0% | |
| TGATGTTACCATTGCAGTAG+GGG | - | chr1.4:52790259-52790278 | MS.gene75009:CDS | 40.0% | |
| TTGCACTTTGTGAAGTCTCA+AGG | + | chr1.4:52792553-52792572 | None:intergenic | 40.0% | |
| ! | AAGTTTTCACCACCTTGTGT+AGG | + | chr1.4:52792617-52792636 | None:intergenic | 40.0% |
| ! | AGTTTTCACCACCTTGTGTA+GGG | + | chr1.4:52792616-52792635 | None:intergenic | 40.0% |
| ! | GAGTAATGGAAATGGTCAAG+TGG | - | chr1.4:52792589-52792608 | MS.gene75009:intron | 40.0% |
| ! | GCTGACTCTACAAATGAAGA+TGG | - | chr1.4:52790630-52790649 | MS.gene75009:intron | 40.0% |
| ! | TCAAATGTTTTGTCTCCACC+AGG | + | chr1.4:52790687-52790706 | None:intergenic | 40.0% |
| ACCACTGAGAGTAATAGTGC+AGG | - | chr1.4:52792463-52792482 | MS.gene75009:intron | 45.0% | |
| ACCTGCACTATTACTCTCAG+TGG | + | chr1.4:52792467-52792486 | None:intergenic | 45.0% | |
| ACTGGAGAAGGATCCTTGAT+TGG | - | chr1.4:52791539-52791558 | MS.gene75009:CDS | 45.0% | |
| CAACTTCATGATGTACCTGG+TGG | - | chr1.4:52790669-52790688 | MS.gene75009:intron | 45.0% | |
| CACAAGGTGGTGAAAACTTG+AGG | - | chr1.4:52792618-52792637 | MS.gene75009:intron | 45.0% | |
| CAGAAGCAAGCATCACCTTA+AGG | + | chr1.4:52791739-52791758 | None:intergenic | 45.0% | |
| GCTTGATGAAGTTGAGCTTG+TGG | - | chr1.4:52791388-52791407 | MS.gene75009:CDS | 45.0% | |
| GGACCATAGAAGGAAAAGTG+TGG | + | chr1.4:52790378-52790397 | None:intergenic | 45.0% | |
| GTCAATTGTAGGCACATCCA+TGG | - | chr1.4:52792345-52792364 | MS.gene75009:intron | 45.0% | |
| GTCGTGTACCATGTCCATAT+TGG | + | chr1.4:52792141-52792160 | None:intergenic | 45.0% | |
| GTTGGATGCATATCTTGCTG+AGG | - | chr1.4:52791604-52791623 | MS.gene75009:CDS | 45.0% | |
| TATGCTAGGCCATTGGATGA+TGG | - | chr1.4:52791689-52791708 | MS.gene75009:CDS | 45.0% | |
| TCCAATGGCCTAGCATAATC+AGG | + | chr1.4:52791686-52791705 | None:intergenic | 45.0% | |
| TCCTGATTATGCTAGGCCAT+TGG | - | chr1.4:52791682-52791701 | MS.gene75009:CDS | 45.0% | |
| TCGTGTATCAGAGCTAGAGA+AGG | - | chr1.4:52792643-52792662 | MS.gene75009:intron | 45.0% | |
| TGATGTTTCCCCTACTGCAA+TGG | + | chr1.4:52790270-52790289 | None:intergenic | 45.0% | |
| TGCAACAAACGGACCATAGA+AGG | + | chr1.4:52790388-52790407 | None:intergenic | 45.0% | |
| TGCATCAACTCCACCAATCA+AGG | + | chr1.4:52791555-52791574 | None:intergenic | 45.0% | |
| TGCTACAGGGTTTGTACAAC+TGG | - | chr1.4:52790227-52790246 | MS.gene75009:CDS | 45.0% | |
| ! | GGAACATGCCTTGATGGTTA+AGG | + | chr1.4:52790958-52790977 | None:intergenic | 45.0% |
| ! | GGAGTAGTTGATGTTGTTCC+AGG | + | chr1.4:52791509-52791528 | None:intergenic | 45.0% |
| ! | GGCATGTTCCGAGGATTTTT+CGG | - | chr1.4:52790968-52790987 | MS.gene75009:intron | 45.0% |
| AACCATCAAGGCATGTTCCG+AGG | - | chr1.4:52790959-52790978 | MS.gene75009:intron | 50.0% | |
| ATCCTCGGAACATGCCTTGA+TGG | + | chr1.4:52790964-52790983 | None:intergenic | 50.0% | |
| GGAGAAGGATCCTTGATTGG+TGG | - | chr1.4:52791542-52791561 | MS.gene75009:CDS | 50.0% | |
| GGATGCATATCTTGCTGAGG+TGG | - | chr1.4:52791607-52791626 | MS.gene75009:CDS | 50.0% | |
| GGTACACGACATTGACACGT+AGG | - | chr1.4:52792151-52792170 | MS.gene75009:CDS | 50.0% | |
| CAAGTGGACCCTACACAAGG+TGG | - | chr1.4:52792605-52792624 | MS.gene75009:intron | 55.0% | |
| GGTCAAGTGGACCCTACACA+AGG | - | chr1.4:52792602-52792621 | MS.gene75009:intron | 55.0% | |
| TTCGTCGTGATGGCCACACA+TGG | - | chr1.4:52790062-52790081 | MS.gene75009:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 52790025 | 52792763 | 52790025 | ID=MS.gene75009 |
| chr1.4 | mRNA | 52790025 | 52792763 | 52790025 | ID=MS.gene75009.t1;Parent=MS.gene75009 |
| chr1.4 | exon | 52792705 | 52792763 | 52792705 | ID=MS.gene75009.t1.exon1;Parent=MS.gene75009.t1 |
| chr1.4 | CDS | 52792705 | 52792763 | 52792705 | ID=cds.MS.gene75009.t1;Parent=MS.gene75009.t1 |
| chr1.4 | exon | 52792484 | 52792553 | 52792484 | ID=MS.gene75009.t1.exon2;Parent=MS.gene75009.t1 |
| chr1.4 | CDS | 52792484 | 52792553 | 52792484 | ID=cds.MS.gene75009.t1;Parent=MS.gene75009.t1 |
| chr1.4 | exon | 52791046 | 52792200 | 52791046 | ID=MS.gene75009.t1.exon3;Parent=MS.gene75009.t1 |
| chr1.4 | CDS | 52791046 | 52792200 | 52791046 | ID=cds.MS.gene75009.t1;Parent=MS.gene75009.t1 |
| chr1.4 | exon | 52790025 | 52790432 | 52790025 | ID=MS.gene75009.t1.exon4;Parent=MS.gene75009.t1 |
| chr1.4 | CDS | 52790025 | 52790432 | 52790025 | ID=cds.MS.gene75009.t1;Parent=MS.gene75009.t1 |
| Gene Sequence |
| Protein sequence |
