Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75050.t1 | RHN59531.1 | 43.9 | 164 | 63 | 4 | 135 | 269 | 122 | 285 | 2.20E-22 | 116.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75050.t1 | A0A072UTQ5 | 43.9 | 164 | 63 | 4 | 135 | 269 | 122 | 285 | 1.6e-22 | 116.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene75050 | 0.801206 | 1.00E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene75050 | 0.802648 | 5.08E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene75050 | -0.805599 | 1.24E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene75050 | 0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene060135 | MS.gene75050 | 0.802214 | 6.24E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene75050 | -0.801023 | 1.09E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75050.t1 | MTR_4g032565 | 43.195 | 169 | 67 | 5 | 130 | 269 | 117 | 285 | 1.90e-31 | 118 |
| MS.gene75050.t1 | MTR_4g032585 | 43.195 | 169 | 67 | 5 | 130 | 269 | 117 | 285 | 2.16e-31 | 117 |
| MS.gene75050.t1 | MTR_8g064300 | 38.919 | 185 | 96 | 4 | 99 | 268 | 127 | 309 | 2.85e-29 | 112 |
| MS.gene75050.t1 | MTR_5g093790 | 38.021 | 192 | 102 | 4 | 92 | 268 | 194 | 383 | 3.32e-28 | 111 |
| MS.gene75050.t1 | MTR_7g110100 | 45.946 | 148 | 65 | 4 | 135 | 268 | 378 | 524 | 2.10e-25 | 105 |
| MS.gene75050.t1 | MTR_1g105785 | 40.541 | 148 | 71 | 3 | 138 | 268 | 379 | 526 | 2.93e-23 | 99.0 |
| MS.gene75050.t1 | MTR_3g108500 | 31.169 | 231 | 82 | 5 | 107 | 261 | 25 | 254 | 1.55e-22 | 94.0 |
| MS.gene75050.t1 | MTR_7g051400 | 39.583 | 144 | 70 | 3 | 138 | 264 | 357 | 500 | 8.20e-22 | 94.7 |
| MS.gene75050.t1 | MTR_2g040680 | 38.931 | 131 | 72 | 2 | 138 | 267 | 119 | 242 | 6.23e-20 | 86.7 |
| MS.gene75050.t1 | MTR_1g492690 | 33.333 | 138 | 74 | 3 | 138 | 257 | 173 | 310 | 6.35e-16 | 77.0 |
| MS.gene75050.t1 | MTR_1g115520 | 35.714 | 70 | 45 | 0 | 130 | 199 | 57 | 126 | 1.90e-12 | 63.9 |
| MS.gene75050.t1 | MTR_3g452170 | 40.517 | 116 | 54 | 4 | 167 | 268 | 337 | 451 | 3.93e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATAATATACATGATTT+TGG | 0.178118 | 6.3:-83627737 | None:intergenic |
| TGGGAAACAAATGTTGTTTA+AGG | 0.242210 | 6.3:+83628198 | MS.gene75050:CDS |
| GAAAGGCTTGCTGCAACTTT+AGG | 0.274755 | 6.3:+83626253 | MS.gene75050:CDS |
| TTCCCAACCACTTTGCTACT+TGG | 0.290059 | 6.3:-83628652 | None:intergenic |
| TGTGACTGTCCACAAAATTA+AGG | 0.297574 | 6.3:+83628309 | MS.gene75050:CDS |
| ATGGGAACTTAAAGCATAAT+TGG | 0.316343 | 6.3:+83628233 | MS.gene75050:CDS |
| TAATCTCCATTCATCTCATT+TGG | 0.330111 | 6.3:+83626062 | MS.gene75050:CDS |
| ATAGCACAGATGAGAATAGA+TGG | 0.415065 | 6.3:-83627375 | None:intergenic |
| TGTTTAATTGTGCAGGGAAC+CGG | 0.424669 | 6.3:+83628139 | MS.gene75050:intron |
| GTGTAGATCCGGCTGTTCTC+AGG | 0.427894 | 6.3:-83625993 | None:intergenic |
| AACGCTAGGTTTGAGGAATT+AGG | 0.434175 | 6.3:+83626033 | MS.gene75050:CDS |
| ATGTCCTACCATTGTTTGAC+AGG | 0.437862 | 6.3:+83627423 | MS.gene75050:CDS |
| GTTGTTTAAGGTGGAATTCA+CGG | 0.447146 | 6.3:+83628210 | MS.gene75050:CDS |
| ATATCCTGAGATGTTGGTTA+TGG | 0.455803 | 6.3:+83628451 | MS.gene75050:CDS |
| GCTGATGAACGCTAGGTTTG+AGG | 0.467581 | 6.3:+83626026 | MS.gene75050:CDS |
| CGAGGTTGCAAGTGTAGATC+CGG | 0.469365 | 6.3:-83626004 | None:intergenic |
| ATCTATTCTCATCTGTGCTA+TGG | 0.472920 | 6.3:+83627377 | MS.gene75050:CDS |
| TTGCGAGTATCCAATTGATC+TGG | 0.475496 | 6.3:+83628165 | MS.gene75050:CDS |
| TTTAATAATTGCAGTTCCGT+TGG | 0.476199 | 6.3:+83627096 | MS.gene75050:intron |
| GAAACAAATGTTGTTTAAGG+TGG | 0.479313 | 6.3:+83628201 | MS.gene75050:CDS |
| TTGACGCAATGAACTTTGAC+AGG | 0.484199 | 6.3:-83628742 | None:intergenic |
| GAGATTGTTGCAGAGAAGAA+AGG | 0.502375 | 6.3:+83626236 | MS.gene75050:CDS |
| GACATACCAAATGAGATGAA+TGG | 0.509003 | 6.3:-83626068 | None:intergenic |
| CACCAAGTAGCAAAGTGGTT+GGG | 0.514111 | 6.3:+83628650 | MS.gene75050:CDS |
| CCCTCTTGAACATGCTCCAA+CGG | 0.524368 | 6.3:-83627112 | None:intergenic |
| CAACCTCGCTGATGAACGCT+AGG | 0.533506 | 6.3:+83626019 | MS.gene75050:CDS |
| ATTGCCATAACCAACATCTC+AGG | 0.534276 | 6.3:-83628455 | None:intergenic |
| ACTTTCTCTAGATTGGGTGT+TGG | 0.538747 | 6.3:+83626211 | MS.gene75050:intron |
| ATGAGAGACCTGAGAACAGC+CGG | 0.541466 | 6.3:+83625985 | MS.gene75050:CDS |
| TAGAACACTTGCAGCTAACA+AGG | 0.541533 | 6.3:+83627174 | MS.gene75050:CDS |
| GTGGTTGGGAAAAGATTAGC+TGG | 0.541972 | 6.3:+83628664 | MS.gene75050:CDS |
| TTTAAGGTGGAATTCACGGA+TGG | 0.557502 | 6.3:+83628214 | MS.gene75050:CDS |
| TCATTGCGTCAAAGTTGAGA+AGG | 0.566953 | 6.3:+83628753 | MS.gene75050:CDS |
| TCCGTTGGAGCATGTTCAAG+AGG | 0.576223 | 6.3:+83627111 | MS.gene75050:CDS |
| AAAAGATTAGCTGGCAGCGT+GGG | 0.580966 | 6.3:+83628673 | MS.gene75050:CDS |
| ACACCAAGTAGCAAAGTGGT+TGG | 0.586766 | 6.3:+83628649 | MS.gene75050:CDS |
| AATTGGATACTCGCAACTAC+CGG | 0.587687 | 6.3:-83628158 | None:intergenic |
| CTCAGGTCTCTCATCGACAT+CGG | 0.590904 | 6.3:-83625976 | None:intergenic |
| TTAAGGTGGAATTCACGGAT+GGG | 0.591193 | 6.3:+83628215 | MS.gene75050:CDS |
| AACGTGGAAGAAACTGAAGT+TGG | 0.595322 | 6.3:+83628700 | MS.gene75050:CDS |
| TTGATTTATTAGGTGCTACA+CGG | 0.596474 | 6.3:+83627810 | MS.gene75050:intron |
| AATGGTAGGACATCAATGCT+TGG | 0.600102 | 6.3:-83627413 | None:intergenic |
| CGATGACAACATACATCAAG+TGG | 0.602815 | 6.3:-83628485 | None:intergenic |
| AACTTTAGGAACATTAATTG+CGG | 0.604320 | 6.3:+83626267 | MS.gene75050:CDS |
| AGCTTCTCTTGATAGCATAG+TGG | 0.608989 | 6.3:-83628258 | None:intergenic |
| CCGTTGGAGCATGTTCAAGA+GGG | 0.612238 | 6.3:+83627112 | MS.gene75050:CDS |
| TTTAGGAACATTAATTGCGG+TGG | 0.612421 | 6.3:+83626270 | MS.gene75050:CDS |
| TATACCTGTCAAACAATGGT+AGG | 0.612513 | 6.3:-83627427 | None:intergenic |
| TTGCATATATCCTGAGATGT+TGG | 0.613483 | 6.3:+83628445 | MS.gene75050:CDS |
| TAGCACAGATGAGAATAGAT+GGG | 0.620099 | 6.3:-83627374 | None:intergenic |
| GGTTTATACCTGTCAAACAA+TGG | 0.623394 | 6.3:-83627431 | None:intergenic |
| ATAGATGGGCTACACATGCA+TGG | 0.624432 | 6.3:-83627360 | None:intergenic |
| TGCTGACAAGATTTGCAACA+AGG | 0.629992 | 6.3:+83628409 | MS.gene75050:intron |
| AAATACACCAAGTAGCAAAG+TGG | 0.642147 | 6.3:+83628645 | MS.gene75050:CDS |
| TGGCAGCGTGGGTTCGAACG+TGG | 0.648721 | 6.3:+83628684 | MS.gene75050:CDS |
| AACTGAGAGCAAATCAAACG+AGG | 0.670294 | 6.3:+83628618 | MS.gene75050:intron |
| GAAAAGATTAGCTGGCAGCG+TGG | 0.680628 | 6.3:+83628672 | MS.gene75050:CDS |
| AAACCTAGCGTTCATCAGCG+AGG | 0.714258 | 6.3:-83626022 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTATATTACTTTTTTT+CGG | + | chr6.3:83626498-83626517 | MS.gene75050:intron | 10.0% |
| !! | AATATAATTCATAGATCAAA+AGG | - | chr6.3:83626489-83626508 | None:intergenic | 15.0% |
| !! | TTTATATAATCATAGATAGA+AGG | - | chr6.3:83627317-83627336 | None:intergenic | 15.0% |
| !!! | TATTTTTCATCTATTGATAA+TGG | + | chr6.3:83626930-83626949 | MS.gene75050:intron | 15.0% |
| !!! | TCAAAATTATAATAATGGAA+AGG | - | chr6.3:83627492-83627511 | None:intergenic | 15.0% |
| !!! | TGTAAGCTTTAAATAATTAT+GGG | + | chr6.3:83627916-83627935 | MS.gene75050:intron | 15.0% |
| !!! | TTGTAAGCTTTAAATAATTA+TGG | + | chr6.3:83627915-83627934 | MS.gene75050:intron | 15.0% |
| !! | AAAATACACAGACATTTAAT+TGG | - | chr6.3:83627267-83627286 | None:intergenic | 20.0% |
| !! | AAACATGATAAAAGAATAGA+AGG | - | chr6.3:83626114-83626133 | None:intergenic | 20.0% |
| !! | AACATGATAAAAGAATAGAA+GGG | - | chr6.3:83626113-83626132 | None:intergenic | 20.0% |
| !! | ATAGAAATAAACACAAAGAA+TGG | - | chr6.3:83626441-83626460 | None:intergenic | 20.0% |
| !! | ATATTAGAAAGAGTTAAGTT+TGG | - | chr6.3:83627058-83627077 | None:intergenic | 20.0% |
| !! | CAAAAAAAAAACGTCAAATT+AGG | - | chr6.3:83627681-83627700 | None:intergenic | 20.0% |
| !! | TAACTCACTATAATTTACTT+TGG | + | chr6.3:83627014-83627033 | MS.gene75050:intron | 20.0% |
| !! | TTATATTTGCATCATATCAA+AGG | - | chr6.3:83626997-83627016 | None:intergenic | 20.0% |
| !! | TTATTTACTTTCTCTAGATT+GGG | + | chr6.3:83626205-83626224 | MS.gene75050:intron | 20.0% |
| !! | TTGAATTTAGAAAACAAAGA+AGG | + | chr6.3:83628093-83628112 | MS.gene75050:intron | 20.0% |
| !!! | AATTTCTTTTGATTAAGTCA+TGG | + | chr6.3:83626750-83626769 | MS.gene75050:intron | 20.0% |
| !!! | AGTGATAATATACATGATTT+TGG | - | chr6.3:83627740-83627759 | None:intergenic | 20.0% |
| !!! | ATTTGGTTACAATCATTTTA+CGG | + | chr6.3:83627646-83627665 | MS.gene75050:intron | 20.0% |
| !!! | CATCTATCTTTTGATTTATT+AGG | + | chr6.3:83627800-83627819 | MS.gene75050:intron | 20.0% |
| !!! | GTTAATGTTACTGATTTTTA+AGG | - | chr6.3:83627864-83627883 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTAAATTCAAATG+TGG | - | chr6.3:83628090-83628109 | None:intergenic | 20.0% |
| !!! | TTTATTCCTAATTTTCTAGA+AGG | + | chr6.3:83626131-83626150 | MS.gene75050:intron | 20.0% |
| ! | AATCAAAAGATAGATGAGTT+AGG | - | chr6.3:83627796-83627815 | None:intergenic | 25.0% |
| ! | GTTATTTACTTTCTCTAGAT+TGG | + | chr6.3:83626204-83626223 | MS.gene75050:intron | 25.0% |
| ! | TATAATCATAGATAGAAGGA+TGG | - | chr6.3:83627313-83627332 | None:intergenic | 25.0% |
| !! | AAAACTCCTTCTAGAAAATT+AGG | - | chr6.3:83626140-83626159 | None:intergenic | 25.0% |
| !! | AACTTTAGGAACATTAATTG+CGG | + | chr6.3:83626267-83626286 | MS.gene75050:CDS | 25.0% |
| !! | TAGTTGTACAAGATTTTGTT+CGG | + | chr6.3:83628332-83628351 | MS.gene75050:intron | 25.0% |
| !! | TTTTATGCAGTGATGATTTA+TGG | + | chr6.3:83626157-83626176 | MS.gene75050:intron | 25.0% |
| !!! | AATTGTTGTTTAATTGTGCA+GGG | + | chr6.3:83628133-83628152 | MS.gene75050:intron | 25.0% |
| !!! | CGAGGTTTTAAGTTTTTAAT+TGG | + | chr6.3:83628535-83628554 | MS.gene75050:intron | 25.0% |
| !!! | TAATTGTTGTTTAATTGTGC+AGG | + | chr6.3:83628132-83628151 | MS.gene75050:intron | 25.0% |
| !!! | TATATTACTTTTTTTCGGCT+AGG | + | chr6.3:83626503-83626522 | MS.gene75050:intron | 25.0% |
| AAAATGGTTTCATCATAACG+TGG | - | chr6.3:83626656-83626675 | None:intergenic | 30.0% | |
| AAACTGATTGATGAGAAGTA+TGG | - | chr6.3:83627455-83627474 | None:intergenic | 30.0% | |
| AACAACAATTATTGCCACTA+TGG | - | chr6.3:83628123-83628142 | None:intergenic | 30.0% | |
| AATCTAATCTAACTCGGATA+CGG | - | chr6.3:83627552-83627571 | None:intergenic | 30.0% | |
| ACAAAAACATCCAGATCAAT+TGG | - | chr6.3:83628178-83628197 | None:intergenic | 30.0% | |
| AGAAGTTCCTCAATGATTTA+AGG | + | chr6.3:83626816-83626835 | MS.gene75050:intron | 30.0% | |
| ATGAAGTCTCTCTAAGTAAT+AGG | - | chr6.3:83626624-83626643 | None:intergenic | 30.0% | |
| ATGGGAACTTAAAGCATAAT+TGG | + | chr6.3:83628233-83628252 | MS.gene75050:CDS | 30.0% | |
| ATTCGCAATCTAATCTAACT+CGG | - | chr6.3:83627558-83627577 | None:intergenic | 30.0% | |
| GAAAACGTAACATATACTTG+TGG | - | chr6.3:83628513-83628532 | None:intergenic | 30.0% | |
| GATTCAATGAAGAACAATCA+GGG | - | chr6.3:83627233-83627252 | None:intergenic | 30.0% | |
| GCAAAACACTGATATTCAAT+TGG | - | chr6.3:83627205-83627224 | None:intergenic | 30.0% | |
| TAATCTCCATTCATCTCATT+TGG | + | chr6.3:83626062-83626081 | MS.gene75050:CDS | 30.0% | |
| TGAAGTCTCTCTAAGTAATA+GGG | - | chr6.3:83626623-83626642 | None:intergenic | 30.0% | |
| TGATTCAATGAAGAACAATC+AGG | - | chr6.3:83627234-83627253 | None:intergenic | 30.0% | |
| TTTAATAATTGCAGTTCCGT+TGG | + | chr6.3:83627096-83627115 | MS.gene75050:intron | 30.0% | |
| ! | GAAACAAATGTTGTTTAAGG+TGG | + | chr6.3:83628201-83628220 | MS.gene75050:CDS | 30.0% |
| ! | GTACAACTACCTTAATTTTG+TGG | - | chr6.3:83628321-83628340 | None:intergenic | 30.0% |
| ! | TATATGTTACGTTTTCAACG+AGG | + | chr6.3:83628517-83628536 | MS.gene75050:intron | 30.0% |
| ! | TGGGAAACAAATGTTGTTTA+AGG | + | chr6.3:83628198-83628217 | MS.gene75050:CDS | 30.0% |
| ! | TTGATTTATTAGGTGCTACA+CGG | + | chr6.3:83627810-83627829 | MS.gene75050:intron | 30.0% |
| !! | ATTGATCTGGATGTTTTTGT+TGG | + | chr6.3:83628178-83628197 | MS.gene75050:CDS | 30.0% |
| !! | TTGATCTGGATGTTTTTGTT+GGG | + | chr6.3:83628179-83628198 | MS.gene75050:CDS | 30.0% |
| !!! | AAACCATTTTTAGTTATGCC+AGG | + | chr6.3:83626666-83626685 | MS.gene75050:intron | 30.0% |
| !!! | ACACAATCAGGTAGTTTTAT+GGG | + | chr6.3:83628039-83628058 | MS.gene75050:intron | 30.0% |
| !!! | TTTGTTTGTTTTAGCACCAT+TGG | + | chr6.3:83627517-83627536 | MS.gene75050:intron | 30.0% |
| AAATACACCAAGTAGCAAAG+TGG | + | chr6.3:83628645-83628664 | MS.gene75050:CDS | 35.0% | |
| AGTCCTGGCATAACTAAAAA+TGG | - | chr6.3:83626672-83626691 | None:intergenic | 35.0% | |
| ATAGCACAGATGAGAATAGA+TGG | - | chr6.3:83627378-83627397 | None:intergenic | 35.0% | |
| ATAGGGAAAAGTGAAATACG+TGG | - | chr6.3:83626606-83626625 | None:intergenic | 35.0% | |
| ATCTAATCTAACTCGGATAC+GGG | - | chr6.3:83627551-83627570 | None:intergenic | 35.0% | |
| ATCTATTCTCATCTGTGCTA+TGG | + | chr6.3:83627377-83627396 | MS.gene75050:CDS | 35.0% | |
| CAACGTTTGTTTGTATGACA+GGG | + | chr6.3:83627701-83627720 | MS.gene75050:intron | 35.0% | |
| CAATGTTCAAATTGAAGTCC+TGG | - | chr6.3:83626687-83626706 | None:intergenic | 35.0% | |
| GAACTTGATGTTGAATACGT+AGG | + | chr6.3:83627611-83627630 | MS.gene75050:intron | 35.0% | |
| GACATACCAAATGAGATGAA+TGG | - | chr6.3:83626071-83626090 | None:intergenic | 35.0% | |
| GGTTTATACCTGTCAAACAA+TGG | - | chr6.3:83627434-83627453 | None:intergenic | 35.0% | |
| TAGCACAGATGAGAATAGAT+GGG | - | chr6.3:83627377-83627396 | None:intergenic | 35.0% | |
| TATACCTGTCAAACAATGGT+AGG | - | chr6.3:83627430-83627449 | None:intergenic | 35.0% | |
| TCACTTGCCTTAAATCATTG+AGG | - | chr6.3:83626826-83626845 | None:intergenic | 35.0% | |
| TGTGACTGTCCACAAAATTA+AGG | + | chr6.3:83628309-83628328 | MS.gene75050:CDS | 35.0% | |
| TTCGCATCTAATCATGTAGA+TGG | + | chr6.3:83626884-83626903 | MS.gene75050:intron | 35.0% | |
| TTGCATATATCCTGAGATGT+TGG | + | chr6.3:83628445-83628464 | MS.gene75050:CDS | 35.0% | |
| TTTAGGAACATTAATTGCGG+TGG | + | chr6.3:83626270-83626289 | MS.gene75050:CDS | 35.0% | |
| ! | ATATCCTGAGATGTTGGTTA+TGG | + | chr6.3:83628451-83628470 | MS.gene75050:CDS | 35.0% |
| ! | GTAGGTTATTGCTGCTTATT+TGG | + | chr6.3:83627629-83627648 | MS.gene75050:intron | 35.0% |
| ! | GTTGTTTAAGGTGGAATTCA+CGG | + | chr6.3:83628210-83628229 | MS.gene75050:CDS | 35.0% |
| !! | CACACAATCAGGTAGTTTTA+TGG | + | chr6.3:83628038-83628057 | MS.gene75050:intron | 35.0% |
| !! | CATGGTTGAATTACTGATTC+AGG | + | chr6.3:83626768-83626787 | MS.gene75050:intron | 35.0% |
| !! | GTGGTTGATGAAACTTATGT+GGG | + | chr6.3:83626182-83626201 | MS.gene75050:intron | 35.0% |
| !! | TCATGTAGATGGTTGATAGT+TGG | + | chr6.3:83626895-83626914 | MS.gene75050:intron | 35.0% |
| !! | TGTGGTTGATGAAACTTATG+TGG | + | chr6.3:83626181-83626200 | MS.gene75050:intron | 35.0% |
| !!! | TGATTTGCTCTCAGTTTTAG+TGG | - | chr6.3:83628614-83628633 | None:intergenic | 35.0% |
| AACGCTAGGTTTGAGGAATT+AGG | + | chr6.3:83626033-83626052 | MS.gene75050:CDS | 40.0% | |
| AACGTGGAAGAAACTGAAGT+TGG | + | chr6.3:83628700-83628719 | MS.gene75050:CDS | 40.0% | |
| AACTGAGAGCAAATCAAACG+AGG | + | chr6.3:83628618-83628637 | MS.gene75050:intron | 40.0% | |
| AATGGTAGGACATCAATGCT+TGG | - | chr6.3:83627416-83627435 | None:intergenic | 40.0% | |
| AATTCACACGTTGAAGACGA+CGG | + | chr6.3:83626530-83626549 | MS.gene75050:intron | 40.0% | |
| AATTGGATACTCGCAACTAC+CGG | - | chr6.3:83628161-83628180 | None:intergenic | 40.0% | |
| ACTTTCTCTAGATTGGGTGT+TGG | + | chr6.3:83626211-83626230 | MS.gene75050:intron | 40.0% | |
| ATGTCCTACCATTGTTTGAC+AGG | + | chr6.3:83627423-83627442 | MS.gene75050:CDS | 40.0% | |
| ATTAGGATTCAAGCCATTGC+AGG | - | chr6.3:83626343-83626362 | None:intergenic | 40.0% | |
| ATTGCCATAACCAACATCTC+AGG | - | chr6.3:83628458-83628477 | None:intergenic | 40.0% | |
| CATCAAGTACAGGACATATG+TGG | + | chr6.3:83627586-83627605 | MS.gene75050:intron | 40.0% | |
| CGATGACAACATACATCAAG+TGG | - | chr6.3:83628488-83628507 | None:intergenic | 40.0% | |
| GAAAAGTGAAATACGTGGAG+GGG | - | chr6.3:83626601-83626620 | None:intergenic | 40.0% | |
| GAGAGCGAGAAACAAACATT+AGG | - | chr6.3:83626360-83626379 | None:intergenic | 40.0% | |
| GAGATTGTTGCAGAGAAGAA+AGG | + | chr6.3:83626236-83626255 | MS.gene75050:CDS | 40.0% | |
| GCAACGTTTGTTTGTATGAC+AGG | + | chr6.3:83627700-83627719 | MS.gene75050:intron | 40.0% | |
| GCAGTGATGATTTATGGTTG+TGG | + | chr6.3:83626163-83626182 | MS.gene75050:intron | 40.0% | |
| GGAAAAGTGAAATACGTGGA+GGG | - | chr6.3:83626602-83626621 | None:intergenic | 40.0% | |
| GGCAAGTGAAGAAGAAATGA+TGG | + | chr6.3:83626837-83626856 | MS.gene75050:intron | 40.0% | |
| TACACTTGAGTCACACAATC+AGG | + | chr6.3:83628027-83628046 | MS.gene75050:intron | 40.0% | |
| TAGAACACTTGCAGCTAACA+AGG | + | chr6.3:83627174-83627193 | MS.gene75050:CDS | 40.0% | |
| TAGAAGCTTATGCACGAAGA+AGG | + | chr6.3:83626961-83626980 | MS.gene75050:intron | 40.0% | |
| TCATTGCGTCAAAGTTGAGA+AGG | + | chr6.3:83628753-83628772 | MS.gene75050:CDS | 40.0% | |
| TCTAATCTAACTCGGATACG+GGG | - | chr6.3:83627550-83627569 | None:intergenic | 40.0% | |
| TGCTGACAAGATTTGCAACA+AGG | + | chr6.3:83628409-83628428 | MS.gene75050:intron | 40.0% | |
| TGGAATCACCACTCAAGTAA+TGG | - | chr6.3:83628594-83628613 | None:intergenic | 40.0% | |
| TGTAGAAGCCATTACTTGAG+TGG | + | chr6.3:83628583-83628602 | MS.gene75050:intron | 40.0% | |
| TGTTTAATTGTGCAGGGAAC+CGG | + | chr6.3:83628139-83628158 | MS.gene75050:intron | 40.0% | |
| TTAAGGTGGAATTCACGGAT+GGG | + | chr6.3:83628215-83628234 | MS.gene75050:CDS | 40.0% | |
| TTGACGCAATGAACTTTGAC+AGG | - | chr6.3:83628745-83628764 | None:intergenic | 40.0% | |
| TTGCGAGTATCCAATTGATC+TGG | + | chr6.3:83628165-83628184 | MS.gene75050:CDS | 40.0% | |
| ! | AGCTTCTCTTGATAGCATAG+TGG | - | chr6.3:83628261-83628280 | None:intergenic | 40.0% |
| ! | TCTGTGTATTTTCCCATGCA+AGG | + | chr6.3:83627275-83627294 | MS.gene75050:intron | 40.0% |
| ! | TTTAAGGTGGAATTCACGGA+TGG | + | chr6.3:83628214-83628233 | MS.gene75050:CDS | 40.0% |
| !!! | GCGGTGGTATTTTTTTGTAG+CGG | + | chr6.3:83626286-83626305 | MS.gene75050:intron | 40.0% |
| ACACCAAGTAGCAAAGTGGT+TGG | + | chr6.3:83628649-83628668 | MS.gene75050:CDS | 45.0% | |
| ATGAGTTGCGCATCAAGTAC+AGG | + | chr6.3:83627576-83627595 | MS.gene75050:intron | 45.0% | |
| CAAGTACAGGACATATGTGG+TGG | + | chr6.3:83627589-83627608 | MS.gene75050:intron | 45.0% | |
| CACCAAGTAGCAAAGTGGTT+GGG | + | chr6.3:83628650-83628669 | MS.gene75050:CDS | 45.0% | |
| GGGAAAAGTGAAATACGTGG+AGG | - | chr6.3:83626603-83626622 | None:intergenic | 45.0% | |
| GTGGTTGGGAAAAGATTAGC+TGG | + | chr6.3:83628664-83628683 | MS.gene75050:CDS | 45.0% | |
| TCATACCTACAGCCTTGCAT+GGG | - | chr6.3:83627290-83627309 | None:intergenic | 45.0% | |
| TTCCCAACCACTTTGCTACT+TGG | - | chr6.3:83628655-83628674 | None:intergenic | 45.0% | |
| ! | AAAAGATTAGCTGGCAGCGT+GGG | + | chr6.3:83628673-83628692 | MS.gene75050:CDS | 45.0% |
| ! | ATGGTGGTGATTTCCTGCAA+TGG | + | chr6.3:83626327-83626346 | MS.gene75050:intron | 45.0% |
| ! | ATTTTCCCATGCAAGGCTGT+AGG | + | chr6.3:83627282-83627301 | MS.gene75050:intron | 45.0% |
| ! | TGCACGAAGAAGGTTTTCGA+AGG | + | chr6.3:83626971-83626990 | MS.gene75050:intron | 45.0% |
| !! | ACAAAGAAGGCGTTCCATAG+TGG | + | chr6.3:83628106-83628125 | MS.gene75050:intron | 45.0% |
| !! | ATAGATGGGCTACACATGCA+TGG | - | chr6.3:83627363-83627382 | None:intergenic | 45.0% |
| !! | GAAAGGCTTGCTGCAACTTT+AGG | + | chr6.3:83626253-83626272 | MS.gene75050:CDS | 45.0% |
| !! | AAAAATCAAAATTATAATAA+TGG | - | chr6.3:83627497-83627516 | None:intergenic | 5.0% |
| AAACCTAGCGTTCATCAGCG+AGG | - | chr6.3:83626025-83626044 | None:intergenic | 50.0% | |
| ATGAGAGACCTGAGAACAGC+CGG | + | chr6.3:83625985-83626004 | MS.gene75050:CDS | 50.0% | |
| CCCTCTTGAACATGCTCCAA+CGG | - | chr6.3:83627115-83627134 | None:intergenic | 50.0% | |
| CCGTTGGAGCATGTTCAAGA+GGG | + | chr6.3:83627112-83627131 | MS.gene75050:CDS | 50.0% | |
| CGAGGTTGCAAGTGTAGATC+CGG | - | chr6.3:83626007-83626026 | None:intergenic | 50.0% | |
| CGATGAATATCAGACGCGCT+AGG | + | chr6.3:83627957-83627976 | MS.gene75050:intron | 50.0% | |
| GCTGATGAACGCTAGGTTTG+AGG | + | chr6.3:83626026-83626045 | MS.gene75050:CDS | 50.0% | |
| GTCATACCTACAGCCTTGCA+TGG | - | chr6.3:83627291-83627310 | None:intergenic | 50.0% | |
| TCCGTTGGAGCATGTTCAAG+AGG | + | chr6.3:83627111-83627130 | MS.gene75050:CDS | 50.0% | |
| TCTAACTCGGATACGGGGTT+CGG | - | chr6.3:83627545-83627564 | None:intergenic | 50.0% | |
| ! | GAAAAGATTAGCTGGCAGCG+TGG | + | chr6.3:83628672-83628691 | MS.gene75050:CDS | 50.0% |
| !!! | CACGCTGATGGTTTTGATGG+TGG | + | chr6.3:83626311-83626330 | MS.gene75050:intron | 50.0% |
| !!! | GCTCACGCTGATGGTTTTGA+TGG | + | chr6.3:83626308-83626327 | MS.gene75050:intron | 50.0% |
| CAACCTCGCTGATGAACGCT+AGG | + | chr6.3:83626019-83626038 | MS.gene75050:CDS | 55.0% | |
| GATACGGGGTTCGGATCCAA+TGG | - | chr6.3:83627536-83627555 | None:intergenic | 55.0% | |
| GTGTAGATCCGGCTGTTCTC+AGG | - | chr6.3:83625996-83626015 | None:intergenic | 55.0% | |
| TTTGTAGCGGCTCACGCTGA+TGG | + | chr6.3:83626299-83626318 | MS.gene75050:intron | 55.0% | |
| TGGCAGCGTGGGTTCGAACG+TGG | + | chr6.3:83628684-83628703 | MS.gene75050:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 83625979 | 83628780 | 83625979 | ID=MS.gene75050 |
| chr6.3 | mRNA | 83625979 | 83628780 | 83625979 | ID=MS.gene75050.t1;Parent=MS.gene75050 |
| chr6.3 | exon | 83625979 | 83626083 | 83625979 | ID=MS.gene75050.t1.exon1;Parent=MS.gene75050.t1 |
| chr6.3 | CDS | 83625979 | 83626083 | 83625979 | ID=cds.MS.gene75050.t1;Parent=MS.gene75050.t1 |
| chr6.3 | exon | 83626222 | 83626291 | 83626222 | ID=MS.gene75050.t1.exon2;Parent=MS.gene75050.t1 |
| chr6.3 | CDS | 83626222 | 83626291 | 83626222 | ID=cds.MS.gene75050.t1;Parent=MS.gene75050.t1 |
| chr6.3 | exon | 83627110 | 83627195 | 83627110 | ID=MS.gene75050.t1.exon3;Parent=MS.gene75050.t1 |
| chr6.3 | CDS | 83627110 | 83627195 | 83627110 | ID=cds.MS.gene75050.t1;Parent=MS.gene75050.t1 |
| chr6.3 | exon | 83627354 | 83627444 | 83627354 | ID=MS.gene75050.t1.exon4;Parent=MS.gene75050.t1 |
| chr6.3 | CDS | 83627354 | 83627444 | 83627354 | ID=cds.MS.gene75050.t1;Parent=MS.gene75050.t1 |
| chr6.3 | exon | 83627722 | 83627746 | 83627722 | ID=MS.gene75050.t1.exon5;Parent=MS.gene75050.t1 |
| chr6.3 | CDS | 83627722 | 83627746 | 83627722 | ID=cds.MS.gene75050.t1;Parent=MS.gene75050.t1 |
| chr6.3 | exon | 83627822 | 83627846 | 83627822 | ID=MS.gene75050.t1.exon6;Parent=MS.gene75050.t1 |
| chr6.3 | CDS | 83627822 | 83627846 | 83627822 | ID=cds.MS.gene75050.t1;Parent=MS.gene75050.t1 |
| chr6.3 | exon | 83628154 | 83628330 | 83628154 | ID=MS.gene75050.t1.exon7;Parent=MS.gene75050.t1 |
| chr6.3 | CDS | 83628154 | 83628330 | 83628154 | ID=cds.MS.gene75050.t1;Parent=MS.gene75050.t1 |
| chr6.3 | exon | 83628419 | 83628493 | 83628419 | ID=MS.gene75050.t1.exon8;Parent=MS.gene75050.t1 |
| chr6.3 | CDS | 83628419 | 83628493 | 83628419 | ID=cds.MS.gene75050.t1;Parent=MS.gene75050.t1 |
| chr6.3 | exon | 83628625 | 83628780 | 83628625 | ID=MS.gene75050.t1.exon9;Parent=MS.gene75050.t1 |
| chr6.3 | CDS | 83628625 | 83628780 | 83628625 | ID=cds.MS.gene75050.t1;Parent=MS.gene75050.t1 |
| Gene Sequence |
| Protein sequence |
