Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75518.t1 | AES72157.1 | 91.6 | 595 | 48 | 2 | 1 | 594 | 1 | 594 | 4.50E-286 | 993.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75518.t1 | Q8L7E5 | 40.5 | 576 | 318 | 4 | 32 | 592 | 51 | 616 | 6.4e-84 | 313.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75518.t1 | G7J364 | 91.6 | 595 | 48 | 2 | 1 | 594 | 1 | 594 | 3.2e-286 | 993.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072669 | MS.gene75518 | PPI |
| MS.gene75518 | MS.gene069778 | PPI |
| MS.gene75518 | MS.gene024720 | PPI |
| MS.gene75518 | MS.gene21699 | PPI |
| MS.gene75518 | MS.gene062634 | PPI |
| MS.gene75518 | MS.gene042816 | PPI |
| MS.gene75518 | MS.gene37411 | PPI |
| MS.gene75518 | MS.gene050436 | PPI |
| MS.gene75518 | MS.gene83287 | PPI |
| MS.gene07091 | MS.gene75518 | PPI |
| MS.gene75518 | MS.gene21929 | PPI |
| MS.gene003010 | MS.gene75518 | PPI |
| MS.gene75518 | MS.gene27182 | PPI |
| MS.gene75518 | MS.gene00765 | PPI |
| MS.gene066515 | MS.gene75518 | PPI |
| MS.gene28843 | MS.gene75518 | PPI |
| MS.gene75518 | MS.gene22271 | PPI |
| MS.gene75518 | MS.gene015001 | PPI |
| MS.gene75518 | MS.gene32800 | PPI |
| MS.gene047484 | MS.gene75518 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75518.t1 | MTR_3g086660 | 93.613 | 595 | 36 | 2 | 1 | 594 | 1 | 594 | 0.0 | 1097 |
| MS.gene75518.t1 | MTR_7g017690 | 50.780 | 577 | 232 | 7 | 24 | 592 | 14 | 546 | 5.66e-154 | 456 |
| MS.gene75518.t1 | MTR_2g075260 | 61.644 | 73 | 28 | 0 | 343 | 415 | 3 | 75 | 7.66e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75518.t1 | AT5G11390 | 39.757 | 576 | 322 | 5 | 32 | 592 | 51 | 616 | 2.11e-104 | 331 |
| MS.gene75518.t1 | AT1G68910 | 38.070 | 570 | 285 | 10 | 32 | 585 | 26 | 543 | 9.37e-95 | 302 |
| MS.gene75518.t1 | AT1G68910 | 38.070 | 570 | 285 | 10 | 32 | 585 | 26 | 543 | 9.37e-95 | 302 |
| MS.gene75518.t1 | AT1G68910 | 38.070 | 570 | 285 | 10 | 32 | 585 | 26 | 543 | 4.78e-94 | 301 |
Find 86 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAAGTGAGAACAAAATTT+TGG | 0.221789 | 3.3:+72322671 | MS.gene75518:CDS |
| GAATTAAATGTCTCTCTTAT+AGG | 0.225398 | 3.3:+72321377 | MS.gene75518:CDS |
| ATATGATTCTAGAGAAATTC+AGG | 0.264795 | 3.3:+72321079 | MS.gene75518:CDS |
| GACAATGCTAGAGAAATCTT+TGG | 0.326522 | 3.3:+72321028 | MS.gene75518:CDS |
| AGGAAGAAACTATTGATGTT+TGG | 0.331030 | 3.3:+72321153 | MS.gene75518:CDS |
| GGAAGAAACTATTGATGTTT+GGG | 0.335966 | 3.3:+72321154 | MS.gene75518:CDS |
| GGATTCATTGGTTAGAGAAT+TGG | 0.353772 | 3.3:+72320152 | MS.gene75518:CDS |
| ATGCGGGGCTTTGGATTCAT+TGG | 0.365440 | 3.3:+72320140 | MS.gene75518:CDS |
| TCAAATTGAAATGAGAAATC+TGG | 0.371328 | 3.3:-72321247 | None:intergenic |
| TTCCTCATTCAATTCGTCAT+TGG | 0.374240 | 3.3:-72321963 | None:intergenic |
| TGATCTGTTATGCGGGGCTT+TGG | 0.380039 | 3.3:+72320131 | MS.gene75518:CDS |
| TAAAGAGTTGGTAAAACAAC+TGG | 0.382777 | 3.3:+72322093 | MS.gene75518:CDS |
| ATCTCTGCATTAACTTTCAC+AGG | 0.398919 | 3.3:-72320969 | None:intergenic |
| TTGAACTAGCTCGTGCTCTA+AGG | 0.405432 | 3.3:-72321126 | None:intergenic |
| GAATTAAAGTTCTTGAGGAT+TGG | 0.407143 | 3.3:+72321983 | MS.gene75518:CDS |
| ATTTCTCATTTCAATTTGAA+TGG | 0.408575 | 3.3:+72321251 | MS.gene75518:CDS |
| ATATTCCACAATAAGAGATA+TGG | 0.429340 | 3.3:+72321850 | MS.gene75518:CDS |
| GATAATGTAACGGGAGATCT+AGG | 0.430264 | 3.3:+72319934 | MS.gene75518:CDS |
| TTCTTGCACTCACCTGGTAG+AGG | 0.440945 | 3.3:+72320230 | MS.gene75518:CDS |
| AATGATAATGATAATGTAAC+GGG | 0.451444 | 3.3:+72319925 | MS.gene75518:CDS |
| TAACACAATGCTTACAAGGT+TGG | 0.456457 | 3.3:+72319966 | MS.gene75518:CDS |
| AGAAATCTTTGGCAAAAGAA+AGG | 0.460518 | 3.3:+72321039 | MS.gene75518:CDS |
| GAAATCTTTGGCAAAAGAAA+GGG | 0.465484 | 3.3:+72321040 | MS.gene75518:CDS |
| TTGAATTTGATCTGTTATGC+GGG | 0.468552 | 3.3:+72320124 | MS.gene75518:CDS |
| GGGGATTGGTTCAGTTGAAA+AGG | 0.469746 | 3.3:+72320098 | MS.gene75518:CDS |
| TTGATTATGAAGAATGTTTG+AGG | 0.473794 | 3.3:+72320280 | MS.gene75518:CDS |
| TGCTTCCTTCTCTTGGCGCA+AGG | 0.477955 | 3.3:-72322026 | None:intergenic |
| TTAGTAACACAATGCTTACA+AGG | 0.483547 | 3.3:+72319962 | MS.gene75518:CDS |
| GAGAGAGCGTCTTAAAGATC+AGG | 0.485536 | 3.3:+72322123 | MS.gene75518:CDS |
| AAGGATCACATGACGGGGAT+TGG | 0.486251 | 3.3:+72320084 | MS.gene75518:CDS |
| TGCAATATCAGCCCTACTCT+CGG | 0.504349 | 3.3:-72321645 | None:intergenic |
| TGTACTTGATGCCGAGAGTA+GGG | 0.507217 | 3.3:+72321634 | MS.gene75518:CDS |
| TTCAAGCTTAGCTTGAAGCT+CGG | 0.509394 | 3.3:-72321291 | None:intergenic |
| AAGAGAGACATTTAATTCAT+CGG | 0.510995 | 3.3:-72321372 | None:intergenic |
| TCTCTTATAGGTCAGACAAT+TGG | 0.511883 | 3.3:+72321389 | MS.gene75518:CDS |
| TCTCTTAGAGCGAAGACCTC+AGG | 0.515157 | 3.3:-72321461 | None:intergenic |
| ATGAGGAATTAAAGTTCTTG+AGG | 0.515779 | 3.3:+72321978 | MS.gene75518:CDS |
| GGTCTTCGCTCTAAGAGATA+AGG | 0.517933 | 3.3:+72321466 | MS.gene75518:CDS |
| TGCTAAGGACATAGGAATGC+GGG | 0.522660 | 3.3:+72322060 | MS.gene75518:CDS |
| AGCATCTGTTGAGGCTAGCA+AGG | 0.524343 | 3.3:+72321811 | MS.gene75518:CDS |
| TCAATTTGAATGGTTTAAGT+CGG | 0.525218 | 3.3:+72321261 | MS.gene75518:CDS |
| TCAGAGAAGGATCACATGAC+GGG | 0.526939 | 3.3:+72320078 | MS.gene75518:CDS |
| GGTGTGTTCTTGCACTCACC+TGG | 0.529378 | 3.3:+72320224 | MS.gene75518:CDS |
| TGAAAGTGCATTTGCTTGAG+AGG | 0.530792 | 3.3:+72321750 | MS.gene75518:CDS |
| CTTGTTCAAAATAATATCCC+TGG | 0.532216 | 3.3:-72321336 | None:intergenic |
| CTTGAATTTGATCTGTTATG+CGG | 0.537156 | 3.3:+72320123 | MS.gene75518:CDS |
| AGGTTTCTAAAGCTCAAAGT+CGG | 0.541963 | 3.3:+72321900 | MS.gene75518:CDS |
| GGTTTCTAAAGCTCAAAGTC+GGG | 0.542993 | 3.3:+72321901 | MS.gene75518:CDS |
| CTGTACTTGATGCCGAGAGT+AGG | 0.544313 | 3.3:+72321633 | MS.gene75518:CDS |
| GGAATCCTTGCGCCAAGAGA+AGG | 0.546489 | 3.3:+72322021 | MS.gene75518:CDS |
| TCTTGCACTCACCTGGTAGA+GGG | 0.547336 | 3.3:+72320231 | MS.gene75518:CDS |
| ATCAAGTAGCTTGTCTTGCA+AGG | 0.547549 | 3.3:-72320262 | None:intergenic |
| TGTTTGGGAAAGATTGTTTG+AGG | 0.547720 | 3.3:+72321169 | MS.gene75518:CDS |
| ATGATGACTGCTAAGGACAT+AGG | 0.550772 | 3.3:+72322052 | MS.gene75518:CDS |
| TGAAGATACACAGATTCCTT+CGG | 0.554036 | 3.3:+72321436 | MS.gene75518:CDS |
| TAATGATAATGATAATGTAA+CGG | 0.564415 | 3.3:+72319924 | MS.gene75518:CDS |
| ATCATTAGATAATGAAACAA+GGG | 0.564653 | 3.3:-72319908 | None:intergenic |
| AGGTAATGAAACCCTCTACC+AGG | 0.569775 | 3.3:-72320242 | None:intergenic |
| TTGTAGAACAGTTTAATACC+AGG | 0.571068 | 3.3:+72321318 | MS.gene75518:CDS |
| AAGATTCTGAAATTCAACTA+CGG | 0.574802 | 3.3:+72321513 | MS.gene75518:CDS |
| TGTGATGCATTTGGCAACAA+TGG | 0.575787 | 3.3:+72320038 | MS.gene75518:CDS |
| CAATGCACATGAGATTCTGA+TGG | 0.576087 | 3.3:+72321196 | MS.gene75518:CDS |
| ATCCAATGACGAATTGAATG+AGG | 0.577830 | 3.3:+72321961 | MS.gene75518:CDS |
| ATCAGAGAAGGATCACATGA+CGG | 0.588649 | 3.3:+72320077 | MS.gene75518:CDS |
| TGAATTTGAGACATCAGAGA+AGG | 0.594049 | 3.3:+72320065 | MS.gene75518:CDS |
| GGATTGTTGAAGCTAGAGAG+AGG | 0.595590 | 3.3:+72320202 | MS.gene75518:CDS |
| GATAAATGATCATAAGTCAA+AGG | 0.597427 | 3.3:+72321880 | MS.gene75518:CDS |
| TGTAGAACAGTTTAATACCA+GGG | 0.602291 | 3.3:+72321319 | MS.gene75518:CDS |
| ATTCTGATATTCATTCGAAG+AGG | 0.605452 | 3.3:-72321546 | None:intergenic |
| AGAGCACGAGCTAGTTCAAG+CGG | 0.606242 | 3.3:+72321130 | MS.gene75518:CDS |
| AATGGTGAAATCTTCAAAGA+GGG | 0.608575 | 3.3:+72320939 | MS.gene75518:CDS |
| ACAGATTCCTTCGGATCCTG+AGG | 0.614863 | 3.3:+72321445 | MS.gene75518:CDS |
| TAATGGTGAAATCTTCAAAG+AGG | 0.620196 | 3.3:+72320938 | MS.gene75518:CDS |
| GCACGAGCTAGTTCAAGCGG+AGG | 0.624782 | 3.3:+72321133 | MS.gene75518:CDS |
| GCGAAGACCTCAGGATCCGA+AGG | 0.625318 | 3.3:-72321452 | None:intergenic |
| TATGATGCTTCATGTGCTGA+AGG | 0.626432 | 3.3:+72321572 | MS.gene75518:CDS |
| GATTGTTGAAGCTAGAGAGA+GGG | 0.626485 | 3.3:+72320203 | MS.gene75518:CDS |
| TGAATTTGATCTGTTATGCG+GGG | 0.632034 | 3.3:+72320125 | MS.gene75518:CDS |
| GAAGCTAAAACAAATATACA+AGG | 0.633680 | 3.3:+72322698 | MS.gene75518:CDS |
| TATCATTAGATAATGAAACA+AGG | 0.639055 | 3.3:-72319909 | None:intergenic |
| GAATTCAGAAGCATCTGTTG+AGG | 0.650705 | 3.3:+72321802 | MS.gene75518:CDS |
| AAGTCGGGCTGAAAGTGCAG+AGG | 0.666928 | 3.3:+72321916 | MS.gene75518:CDS |
| AATGCACATGAGATTCTGAT+GGG | 0.674287 | 3.3:+72321197 | MS.gene75518:CDS |
| CAGAGAAGGATCACATGACG+GGG | 0.679132 | 3.3:+72320079 | MS.gene75518:CDS |
| CTGCTAAGGACATAGGAATG+CGG | 0.679985 | 3.3:+72322059 | MS.gene75518:CDS |
| GCTAAAACAAATATACAAGG+AGG | 0.695923 | 3.3:+72322701 | MS.gene75518:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATTACAAATATTTCA+TGG | + | chr3.3:72322184-72322203 | MS.gene75518:intron | 10.0% |
| !!! | TATAAAAGTTTATGTTTTTT+CGG | + | chr3.3:72320894-72320913 | MS.gene75518:intron | 10.0% |
| !! | ACAATATTAGTAATATAAGA+AGG | + | chr3.3:72320765-72320784 | MS.gene75518:intron | 15.0% |
| !! | ATGAAATTCTATGAAATAAA+AGG | - | chr3.3:72322441-72322460 | None:intergenic | 15.0% |
| !! | CAATATTAGTAATATAAGAA+GGG | + | chr3.3:72320766-72320785 | MS.gene75518:intron | 15.0% |
| !! | TAAACAATTAAAAAAAGAGT+GGG | - | chr3.3:72322550-72322569 | None:intergenic | 15.0% |
| !! | TGAAATTCTATGAAATAAAA+GGG | - | chr3.3:72322440-72322459 | None:intergenic | 15.0% |
| !!! | ATAAAAGTTTATGTTTTTTC+GGG | + | chr3.3:72320895-72320914 | MS.gene75518:intron | 15.0% |
| !!! | TAATGATAATGATAATGTAA+CGG | + | chr3.3:72319924-72319943 | MS.gene75518:CDS | 15.0% |
| !! | AAAAATGGCAGTAAAATATA+AGG | - | chr3.3:72322413-72322432 | None:intergenic | 20.0% |
| !! | AAACAATTAAAAAAAGAGTG+GGG | - | chr3.3:72322549-72322568 | None:intergenic | 20.0% |
| !! | ATCATTAGATAATGAAACAA+GGG | - | chr3.3:72319911-72319930 | None:intergenic | 20.0% |
| !! | ATTTCTCATTTCAATTTGAA+TGG | + | chr3.3:72321251-72321270 | MS.gene75518:CDS | 20.0% |
| !! | CATCAATGATATATTGTATA+TGG | + | chr3.3:72322515-72322534 | MS.gene75518:intron | 20.0% |
| !! | GTAAACAATTAAAAAAAGAG+TGG | - | chr3.3:72322551-72322570 | None:intergenic | 20.0% |
| !! | TATCATTAGATAATGAAACA+AGG | - | chr3.3:72319912-72319931 | None:intergenic | 20.0% |
| !! | TTTCACGAAATTGTTAAAAA+TGG | + | chr3.3:72320412-72320431 | MS.gene75518:intron | 20.0% |
| !!! | AATGATAATGATAATGTAAC+GGG | + | chr3.3:72319925-72319944 | MS.gene75518:CDS | 20.0% |
| !!! | TCTTTAAAAAAGATCGAAAT+TGG | + | chr3.3:72320366-72320385 | MS.gene75518:CDS | 20.0% |
| ! | AAATAAAAGGGAGCAAAAAA+TGG | - | chr3.3:72322428-72322447 | None:intergenic | 25.0% |
| ! | AAGAGAGACATTTAATTCAT+CGG | - | chr3.3:72321375-72321394 | None:intergenic | 25.0% |
| ! | AGAAGTTTATAAACATGCAT+TGG | - | chr3.3:72322220-72322239 | None:intergenic | 25.0% |
| ! | ATATTCCACAATAAGAGATA+TGG | + | chr3.3:72321850-72321869 | MS.gene75518:CDS | 25.0% |
| ! | ATCGGTAATTATTGAGAAAA+TGG | + | chr3.3:72320503-72320522 | MS.gene75518:intron | 25.0% |
| ! | ATGAAATGTATTCTCTATCT+TGG | - | chr3.3:72322155-72322174 | None:intergenic | 25.0% |
| ! | ATGCATGTTTATAAACTTCT+AGG | + | chr3.3:72322220-72322239 | MS.gene75518:intron | 25.0% |
| ! | CAAAACATATTACAGACAAA+AGG | - | chr3.3:72320646-72320665 | None:intergenic | 25.0% |
| ! | GAAGCTAAAACAAATATACA+AGG | + | chr3.3:72322698-72322717 | MS.gene75518:CDS | 25.0% |
| ! | GAATTAAATGTCTCTCTTAT+AGG | + | chr3.3:72321377-72321396 | MS.gene75518:CDS | 25.0% |
| ! | GATAAATGATCATAAGTCAA+AGG | + | chr3.3:72321880-72321899 | MS.gene75518:CDS | 25.0% |
| ! | TCAAATTGAAATGAGAAATC+TGG | - | chr3.3:72321250-72321269 | None:intergenic | 25.0% |
| ! | TCAATTTGAATGGTTTAAGT+CGG | + | chr3.3:72321261-72321280 | MS.gene75518:CDS | 25.0% |
| ! | TTGATTATGAAGAATGTTTG+AGG | + | chr3.3:72320280-72320299 | MS.gene75518:CDS | 25.0% |
| !! | AATTTTTGCCAAAATCACAA+TGG | - | chr3.3:72322289-72322308 | None:intergenic | 25.0% |
| !! | ATATGATTCTAGAGAAATTC+AGG | + | chr3.3:72321079-72321098 | MS.gene75518:CDS | 25.0% |
| !! | ATTTTCCATATCTCTTATTG+TGG | - | chr3.3:72321858-72321877 | None:intergenic | 25.0% |
| !! | TAGAGAATTGGATGAATTTT+TGG | + | chr3.3:72320164-72320183 | MS.gene75518:CDS | 25.0% |
| !! | TTTCACAAGGTAATTGATTT+AGG | - | chr3.3:72320669-72320688 | None:intergenic | 25.0% |
| !! | TTTTGCAAAACAATTTCACA+AGG | - | chr3.3:72320682-72320701 | None:intergenic | 25.0% |
| !! | TTTTGGACAGTTTACATTAT+GGG | + | chr3.3:72320181-72320200 | MS.gene75518:CDS | 25.0% |
| !! | TTTTTGGACAGTTTACATTA+TGG | + | chr3.3:72320180-72320199 | MS.gene75518:CDS | 25.0% |
| !!! | AAGATTCTGAAATTCAACTA+CGG | + | chr3.3:72321513-72321532 | MS.gene75518:CDS | 25.0% |
| !!! | TGAAATTGTTTTGCAAAAAG+TGG | + | chr3.3:72320684-72320703 | MS.gene75518:intron | 25.0% |
| AATGGCAGTAAAATATAAGG+AGG | - | chr3.3:72322410-72322429 | None:intergenic | 30.0% | |
| AATGGTGAAATCTTCAAAGA+GGG | + | chr3.3:72320939-72320958 | MS.gene75518:CDS | 30.0% | |
| AGAAATCTTTGGCAAAAGAA+AGG | + | chr3.3:72321039-72321058 | MS.gene75518:CDS | 30.0% | |
| AGGAAGAAACTATTGATGTT+TGG | + | chr3.3:72321153-72321172 | MS.gene75518:CDS | 30.0% | |
| ATGAAGAATATTGAAGTGAC+TGG | + | chr3.3:72320798-72320817 | MS.gene75518:intron | 30.0% | |
| ATGAGGAATTAAAGTTCTTG+AGG | + | chr3.3:72321978-72321997 | MS.gene75518:CDS | 30.0% | |
| ATGGCAGTAAAATATAAGGA+GGG | - | chr3.3:72322409-72322428 | None:intergenic | 30.0% | |
| ATTCTGATATTCATTCGAAG+AGG | - | chr3.3:72321549-72321568 | None:intergenic | 30.0% | |
| CTTGAATTTGATCTGTTATG+CGG | + | chr3.3:72320123-72320142 | MS.gene75518:CDS | 30.0% | |
| CTTGTTCAAAATAATATCCC+TGG | - | chr3.3:72321339-72321358 | None:intergenic | 30.0% | |
| GAAATCTTTGGCAAAAGAAA+GGG | + | chr3.3:72321040-72321059 | MS.gene75518:CDS | 30.0% | |
| GAATTAAAGTTCTTGAGGAT+TGG | + | chr3.3:72321983-72322002 | MS.gene75518:CDS | 30.0% | |
| GAGGATTGGATTCAAAAATA+TGG | + | chr3.3:72321997-72322016 | MS.gene75518:CDS | 30.0% | |
| GATTGGATTCAAAAATATGG+AGG | + | chr3.3:72322000-72322019 | MS.gene75518:CDS | 30.0% | |
| GCTAAAACAAATATACAAGG+AGG | + | chr3.3:72322701-72322720 | MS.gene75518:CDS | 30.0% | |
| GGAAGAAACTATTGATGTTT+GGG | + | chr3.3:72321154-72321173 | MS.gene75518:CDS | 30.0% | |
| TAATGGTGAAATCTTCAAAG+AGG | + | chr3.3:72320938-72320957 | MS.gene75518:CDS | 30.0% | |
| TATATAGTCCAGTGCATATT+TGG | - | chr3.3:72322373-72322392 | None:intergenic | 30.0% | |
| TCACTTAAATAAGCAAGTTG+AGG | + | chr3.3:72322468-72322487 | MS.gene75518:intron | 30.0% | |
| TGTAGAACAGTTTAATACCA+GGG | + | chr3.3:72321319-72321338 | MS.gene75518:CDS | 30.0% | |
| TGTTTGATGAAAACAGGTAA+TGG | + | chr3.3:72320921-72320940 | MS.gene75518:intron | 30.0% | |
| TTAGTAACACAATGCTTACA+AGG | + | chr3.3:72319962-72319981 | MS.gene75518:CDS | 30.0% | |
| TTGAATTTGATCTGTTATGC+GGG | + | chr3.3:72320124-72320143 | MS.gene75518:CDS | 30.0% | |
| TTGTAGAACAGTTTAATACC+AGG | + | chr3.3:72321318-72321337 | MS.gene75518:CDS | 30.0% | |
| ! | AAAAAGTGGTTACTTTCTTG+TGG | + | chr3.3:72320698-72320717 | MS.gene75518:intron | 30.0% |
| ! | AAATTTTGTTCTCACTTGCT+AGG | - | chr3.3:72322671-72322690 | None:intergenic | 30.0% |
| ! | AGCAAGTGAGAACAAAATTT+TGG | + | chr3.3:72322671-72322690 | MS.gene75518:CDS | 30.0% |
| ! | GAAGAGTTGAATCTTTTGAA+AGG | + | chr3.3:72321713-72321732 | MS.gene75518:CDS | 30.0% |
| ! | GAGAAATTTTGTGATGCATT+TGG | + | chr3.3:72320029-72320048 | MS.gene75518:CDS | 30.0% |
| !! | AATTTTGTTCTCACTTGCTA+GGG | - | chr3.3:72322670-72322689 | None:intergenic | 30.0% |
| !! | GGCAAAACTTTTTAAAGAGT+TGG | + | chr3.3:72322081-72322100 | MS.gene75518:CDS | 30.0% |
| !! | TAAAGAGTTGGTAAAACAAC+TGG | + | chr3.3:72322093-72322112 | MS.gene75518:CDS | 30.0% |
| !! | TTGAATCTTTTGAAAGGTGA+TGG | + | chr3.3:72321719-72321738 | MS.gene75518:CDS | 30.0% |
| AATGCACATGAGATTCTGAT+GGG | + | chr3.3:72321197-72321216 | MS.gene75518:CDS | 35.0% | |
| AGCAAAAATGATGACTGCTA+AGG | + | chr3.3:72322045-72322064 | MS.gene75518:CDS | 35.0% | |
| ATCCAATGACGAATTGAATG+AGG | + | chr3.3:72321961-72321980 | MS.gene75518:CDS | 35.0% | |
| ATCTCTGCATTAACTTTCAC+AGG | - | chr3.3:72320972-72320991 | None:intergenic | 35.0% | |
| CTTCAAATCGAAGTTATGTC+AGG | - | chr3.3:72320601-72320620 | None:intergenic | 35.0% | |
| GACAATGCTAGAGAAATCTT+TGG | + | chr3.3:72321028-72321047 | MS.gene75518:CDS | 35.0% | |
| TAACACAATGCTTACAAGGT+TGG | + | chr3.3:72319966-72319985 | MS.gene75518:CDS | 35.0% | |
| TCTCTTATAGGTCAGACAAT+TGG | + | chr3.3:72321389-72321408 | MS.gene75518:CDS | 35.0% | |
| TGAAGATACACAGATTCCTT+CGG | + | chr3.3:72321436-72321455 | MS.gene75518:CDS | 35.0% | |
| TGAATTTGATCTGTTATGCG+GGG | + | chr3.3:72320125-72320144 | MS.gene75518:CDS | 35.0% | |
| TGACTTATTCACATGAACAC+AGG | - | chr3.3:72322586-72322605 | None:intergenic | 35.0% | |
| TGGCAGTAAAATATAAGGAG+GGG | - | chr3.3:72322408-72322427 | None:intergenic | 35.0% | |
| TGTTTGGGAAAGATTGTTTG+AGG | + | chr3.3:72321169-72321188 | MS.gene75518:CDS | 35.0% | |
| TTCCTCATTCAATTCGTCAT+TGG | - | chr3.3:72321966-72321985 | None:intergenic | 35.0% | |
| ! | CCAGTGCATATTTGGAATTA+CGG | - | chr3.3:72322365-72322384 | None:intergenic | 35.0% |
| ! | GGATTCATTGGTTAGAGAAT+TGG | + | chr3.3:72320152-72320171 | MS.gene75518:CDS | 35.0% |
| ! | TGAATTTGAGACATCAGAGA+AGG | + | chr3.3:72320065-72320084 | MS.gene75518:CDS | 35.0% |
| !! | AATCTTTTGAAAGGTGATGG+AGG | + | chr3.3:72321722-72321741 | MS.gene75518:CDS | 35.0% |
| !! | AGGTTTCTAAAGCTCAAAGT+CGG | + | chr3.3:72321900-72321919 | MS.gene75518:CDS | 35.0% |
| !! | TCATTTTTGCTTCCTTCTCT+TGG | - | chr3.3:72322036-72322055 | None:intergenic | 35.0% |
| !!! | TACATTCAGCTAGTTTTCAG+AGG | + | chr3.3:72320334-72320353 | MS.gene75518:CDS | 35.0% |
| ATCAGAGAAGGATCACATGA+CGG | + | chr3.3:72320077-72320096 | MS.gene75518:CDS | 40.0% | |
| ATGATGACTGCTAAGGACAT+AGG | + | chr3.3:72322052-72322071 | MS.gene75518:CDS | 40.0% | |
| CAATGCACATGAGATTCTGA+TGG | + | chr3.3:72321196-72321215 | MS.gene75518:CDS | 40.0% | |
| CCGTAATTCCAAATATGCAC+TGG | + | chr3.3:72322362-72322381 | MS.gene75518:intron | 40.0% | |
| GATTGTTGAAGCTAGAGAGA+GGG | + | chr3.3:72320203-72320222 | MS.gene75518:CDS | 40.0% | |
| GGGACATGTTTGATGAAAAC+AGG | + | chr3.3:72320915-72320934 | MS.gene75518:intron | 40.0% | |
| TATGATGCTTCATGTGCTGA+AGG | + | chr3.3:72321572-72321591 | MS.gene75518:CDS | 40.0% | |
| TGACACTGACACGTTAACAT+CGG | + | chr3.3:72320485-72320504 | MS.gene75518:intron | 40.0% | |
| TGTGATGCATTTGGCAACAA+TGG | + | chr3.3:72320038-72320057 | MS.gene75518:CDS | 40.0% | |
| ! | ACAGTCTGCCATTGTGATTT+TGG | + | chr3.3:72322278-72322297 | MS.gene75518:intron | 40.0% |
| ! | ATCAAGTAGCTTGTCTTGCA+AGG | - | chr3.3:72320265-72320284 | None:intergenic | 40.0% |
| ! | GATAATGTAACGGGAGATCT+AGG | + | chr3.3:72319934-72319953 | MS.gene75518:CDS | 40.0% |
| ! | TAAACTTCTAGGAGCATGTC+TGG | + | chr3.3:72322231-72322250 | MS.gene75518:intron | 40.0% |
| ! | TGAAAGTGCATTTGCTTGAG+AGG | + | chr3.3:72321750-72321769 | MS.gene75518:CDS | 40.0% |
| ! | TTCAAGCTTAGCTTGAAGCT+CGG | - | chr3.3:72321294-72321313 | None:intergenic | 40.0% |
| !! | GAATTCAGAAGCATCTGTTG+AGG | + | chr3.3:72321802-72321821 | MS.gene75518:CDS | 40.0% |
| !! | GGTTTCTAAAGCTCAAAGTC+GGG | + | chr3.3:72321901-72321920 | MS.gene75518:CDS | 40.0% |
| ACATGTGCCTGTATCAGACA+CGG | - | chr3.3:72320567-72320586 | None:intergenic | 45.0% | |
| AGATCGAAATTGGTACGCAG+TGG | + | chr3.3:72320376-72320395 | MS.gene75518:intron | 45.0% | |
| AGCTATCCCATCCCATACTA+AGG | - | chr3.3:72322494-72322513 | None:intergenic | 45.0% | |
| AGGTAATGAAACCCTCTACC+AGG | - | chr3.3:72320245-72320264 | None:intergenic | 45.0% | |
| CGGTGAGTTTGACGAAATCA+CGG | - | chr3.3:72322345-72322364 | None:intergenic | 45.0% | |
| CTGCTAAGGACATAGGAATG+CGG | + | chr3.3:72322059-72322078 | MS.gene75518:CDS | 45.0% | |
| GGATTGTTGAAGCTAGAGAG+AGG | + | chr3.3:72320202-72320221 | MS.gene75518:CDS | 45.0% | |
| TCAGAGAAGGATCACATGAC+GGG | + | chr3.3:72320078-72320097 | MS.gene75518:CDS | 45.0% | |
| TGACACGACATAGACAGAAG+TGG | - | chr3.3:72320544-72320563 | None:intergenic | 45.0% | |
| TGCAATATCAGCCCTACTCT+CGG | - | chr3.3:72321648-72321667 | None:intergenic | 45.0% | |
| TGCTAAGGACATAGGAATGC+GGG | + | chr3.3:72322060-72322079 | MS.gene75518:CDS | 45.0% | |
| TGTACTTGATGCCGAGAGTA+GGG | + | chr3.3:72321634-72321653 | MS.gene75518:CDS | 45.0% | |
| TTGAACTAGCTCGTGCTCTA+AGG | - | chr3.3:72321129-72321148 | None:intergenic | 45.0% | |
| TTGACGAAATCACGGTGACA+CGG | - | chr3.3:72322337-72322356 | None:intergenic | 45.0% | |
| TTGAGGCCTTAGTATGGGAT+GGG | + | chr3.3:72322485-72322504 | MS.gene75518:intron | 45.0% | |
| ! | AGCAAGTTGAGGCCTTAGTA+TGG | + | chr3.3:72322479-72322498 | MS.gene75518:intron | 45.0% |
| ! | GCAAGTTGAGGCCTTAGTAT+GGG | + | chr3.3:72322480-72322499 | MS.gene75518:intron | 45.0% |
| !! | GAGAGAGCGTCTTAAAGATC+AGG | + | chr3.3:72322123-72322142 | MS.gene75518:CDS | 45.0% |
| !! | GGGGATTGGTTCAGTTGAAA+AGG | + | chr3.3:72320098-72320117 | MS.gene75518:CDS | 45.0% |
| !! | GGTCTTCGCTCTAAGAGATA+AGG | + | chr3.3:72321466-72321485 | MS.gene75518:CDS | 45.0% |
| ACAGATTCCTTCGGATCCTG+AGG | + | chr3.3:72321445-72321464 | MS.gene75518:CDS | 50.0% | |
| AGAGCACGAGCTAGTTCAAG+CGG | + | chr3.3:72321130-72321149 | MS.gene75518:CDS | 50.0% | |
| AGCATCTGTTGAGGCTAGCA+AGG | + | chr3.3:72321811-72321830 | MS.gene75518:CDS | 50.0% | |
| CAGAGAAGGATCACATGACG+GGG | + | chr3.3:72320079-72320098 | MS.gene75518:CDS | 50.0% | |
| CTGTACTTGATGCCGAGAGT+AGG | + | chr3.3:72321633-72321652 | MS.gene75518:CDS | 50.0% | |
| GTTGAGGCCTTAGTATGGGA+TGG | + | chr3.3:72322484-72322503 | MS.gene75518:intron | 50.0% | |
| TCTCTTAGAGCGAAGACCTC+AGG | - | chr3.3:72321464-72321483 | None:intergenic | 50.0% | |
| TCTTGCACTCACCTGGTAGA+GGG | + | chr3.3:72320231-72320250 | MS.gene75518:CDS | 50.0% | |
| TGATCTGTTATGCGGGGCTT+TGG | + | chr3.3:72320131-72320150 | MS.gene75518:CDS | 50.0% | |
| TTCTTGCACTCACCTGGTAG+AGG | + | chr3.3:72320230-72320249 | MS.gene75518:CDS | 50.0% | |
| ! | AAGGATCACATGACGGGGAT+TGG | + | chr3.3:72320084-72320103 | MS.gene75518:CDS | 50.0% |
| !! | ATGCGGGGCTTTGGATTCAT+TGG | + | chr3.3:72320140-72320159 | MS.gene75518:CDS | 50.0% |
| CGTGTCACCGTGTCTGATAC+AGG | + | chr3.3:72320557-72320576 | MS.gene75518:intron | 55.0% | |
| GGAATCCTTGCGCCAAGAGA+AGG | + | chr3.3:72322021-72322040 | MS.gene75518:CDS | 55.0% | |
| GGTGTGTTCTTGCACTCACC+TGG | + | chr3.3:72320224-72320243 | MS.gene75518:CDS | 55.0% | |
| TGCTTCCTTCTCTTGGCGCA+AGG | - | chr3.3:72322029-72322048 | None:intergenic | 55.0% | |
| ! | AAGTCGGGCTGAAAGTGCAG+AGG | + | chr3.3:72321916-72321935 | MS.gene75518:CDS | 55.0% |
| GCACGAGCTAGTTCAAGCGG+AGG | + | chr3.3:72321133-72321152 | MS.gene75518:CDS | 60.0% | |
| GCGAAGACCTCAGGATCCGA+AGG | - | chr3.3:72321455-72321474 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 72319880 | 72322728 | 72319880 | ID=MS.gene75518 |
| chr3.3 | mRNA | 72319880 | 72322728 | 72319880 | ID=MS.gene75518.t1;Parent=MS.gene75518 |
| chr3.3 | exon | 72319880 | 72320387 | 72319880 | ID=MS.gene75518.t1.exon1;Parent=MS.gene75518.t1 |
| chr3.3 | CDS | 72319880 | 72320387 | 72319880 | ID=cds.MS.gene75518.t1;Parent=MS.gene75518.t1 |
| chr3.3 | exon | 72320937 | 72322144 | 72320937 | ID=MS.gene75518.t1.exon2;Parent=MS.gene75518.t1 |
| chr3.3 | CDS | 72320937 | 72322144 | 72320937 | ID=cds.MS.gene75518.t1;Parent=MS.gene75518.t1 |
| chr3.3 | exon | 72322660 | 72322728 | 72322660 | ID=MS.gene75518.t1.exon3;Parent=MS.gene75518.t1 |
| chr3.3 | CDS | 72322660 | 72322728 | 72322660 | ID=cds.MS.gene75518.t1;Parent=MS.gene75518.t1 |
| Gene Sequence |
| Protein sequence |
