Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75692.t1 | XP_003601648.1 | 99 | 386 | 4 | 0 | 20 | 405 | 4 | 389 | 9.90E-221 | 775.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75692.t1 | P51081 | 96.1 | 386 | 15 | 0 | 20 | 405 | 4 | 389 | 5.2e-218 | 758.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75692.t1 | G7JA71 | 99.0 | 386 | 4 | 0 | 20 | 405 | 4 | 389 | 7.2e-221 | 775.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050883 | MS.gene75692 | 0.818372 | 2.03E-52 | -1.69E-46 |
| MS.gene051341 | MS.gene75692 | 0.810341 | 1.21E-50 | -1.69E-46 |
| MS.gene055961 | MS.gene75692 | 0.8163 | 5.94E-52 | -1.69E-46 |
| MS.gene059690 | MS.gene75692 | 0.805143 | 1.54E-49 | -1.69E-46 |
| MS.gene059694 | MS.gene75692 | 0.81134 | 7.35E-51 | -1.69E-46 |
| MS.gene059697 | MS.gene75692 | 0.818258 | 2.15E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75692.t1 | MTR_3g083920 | 98.964 | 386 | 4 | 0 | 20 | 405 | 4 | 389 | 0.0 | 793 |
| MS.gene75692.t1 | MTR_3g083910 | 94.545 | 385 | 21 | 0 | 21 | 405 | 5 | 389 | 0.0 | 764 |
| MS.gene75692.t1 | MTR_5g007713 | 91.429 | 385 | 33 | 0 | 20 | 404 | 4 | 388 | 0.0 | 747 |
| MS.gene75692.t1 | MTR_5g007717 | 90.909 | 385 | 35 | 0 | 20 | 404 | 4 | 388 | 0.0 | 746 |
| MS.gene75692.t1 | MTR_1g098140 | 91.429 | 385 | 33 | 0 | 20 | 404 | 4 | 388 | 0.0 | 746 |
| MS.gene75692.t1 | MTR_7g016800 | 91.169 | 385 | 34 | 0 | 20 | 404 | 4 | 388 | 0.0 | 743 |
| MS.gene75692.t1 | MTR_1g097935 | 91.169 | 385 | 34 | 0 | 20 | 404 | 4 | 388 | 0.0 | 743 |
| MS.gene75692.t1 | MTR_1g097910 | 90.909 | 385 | 35 | 0 | 20 | 404 | 4 | 388 | 0.0 | 743 |
| MS.gene75692.t1 | MTR_7g016720 | 91.169 | 385 | 34 | 0 | 20 | 404 | 4 | 388 | 0.0 | 742 |
| MS.gene75692.t1 | MTR_7g016820 | 90.909 | 385 | 35 | 0 | 20 | 404 | 4 | 388 | 0.0 | 742 |
| MS.gene75692.t1 | MTR_7g016700 | 90.649 | 385 | 36 | 0 | 20 | 404 | 4 | 388 | 0.0 | 741 |
| MS.gene75692.t1 | MTR_5g007760 | 90.909 | 385 | 35 | 0 | 20 | 404 | 4 | 388 | 0.0 | 741 |
| MS.gene75692.t1 | MTR_5g007730 | 90.649 | 385 | 36 | 0 | 20 | 404 | 4 | 388 | 0.0 | 741 |
| MS.gene75692.t1 | MTR_7g016780 | 90.649 | 385 | 36 | 0 | 20 | 404 | 4 | 388 | 0.0 | 739 |
| MS.gene75692.t1 | MTR_3g086260 | 87.565 | 386 | 48 | 0 | 20 | 405 | 4 | 389 | 0.0 | 707 |
| MS.gene75692.t1 | MTR_2g058470 | 85.195 | 385 | 57 | 0 | 20 | 404 | 4 | 388 | 0.0 | 695 |
| MS.gene75692.t1 | MTR_7g084300 | 82.292 | 384 | 68 | 0 | 20 | 403 | 4 | 387 | 0.0 | 677 |
| MS.gene75692.t1 | MTR_3g088675 | 70.157 | 382 | 114 | 0 | 23 | 404 | 7 | 388 | 0.0 | 589 |
| MS.gene75692.t1 | MTR_7g113405 | 90.397 | 302 | 29 | 0 | 103 | 404 | 1 | 302 | 0.0 | 567 |
| MS.gene75692.t1 | MTR_5g007740 | 79.630 | 324 | 66 | 0 | 80 | 403 | 1 | 324 | 0.0 | 536 |
| MS.gene75692.t1 | MTR_5g007723 | 65.736 | 394 | 88 | 5 | 28 | 403 | 32 | 396 | 0.0 | 513 |
| MS.gene75692.t1 | MTR_5g007770 | 74.000 | 300 | 45 | 2 | 86 | 385 | 1 | 267 | 1.72e-160 | 452 |
| MS.gene75692.t1 | MTR_3g088670 | 47.949 | 390 | 189 | 6 | 26 | 404 | 2 | 388 | 2.47e-128 | 375 |
| MS.gene75692.t1 | MTR_4g075560 | 43.158 | 380 | 209 | 4 | 27 | 403 | 13 | 388 | 7.51e-105 | 315 |
| MS.gene75692.t1 | MTR_4g078730 | 38.606 | 373 | 222 | 2 | 31 | 403 | 24 | 389 | 7.90e-96 | 292 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75692.t1 | AT5G13930 | 84.278 | 388 | 60 | 1 | 17 | 403 | 6 | 393 | 0.0 | 688 |
| MS.gene75692.t1 | AT4G34850 | 41.067 | 375 | 217 | 3 | 31 | 403 | 18 | 390 | 1.97e-98 | 299 |
| MS.gene75692.t1 | AT4G00040 | 41.114 | 377 | 212 | 5 | 30 | 403 | 16 | 385 | 2.13e-96 | 293 |
| MS.gene75692.t1 | AT1G02050 | 40.741 | 378 | 214 | 5 | 31 | 405 | 24 | 394 | 1.63e-90 | 279 |
| MS.gene75692.t1 | AT4G34850 | 41.509 | 318 | 183 | 2 | 88 | 403 | 1 | 317 | 4.44e-84 | 259 |
| MS.gene75692.t1 | AT3G52160 | 28.395 | 243 | 158 | 9 | 166 | 405 | 97 | 326 | 2.91e-13 | 70.9 |
| MS.gene75692.t1 | AT3G52160 | 28.631 | 241 | 156 | 9 | 166 | 403 | 210 | 437 | 9.89e-13 | 69.7 |
Find 100 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGATTACAATTCCATCTTT+TGG | 0.222422 | 3.3:-70417360 | MS.gene75692:CDS |
| GACCAAGTTGAACTCAAATT+AGG | 0.280063 | 3.3:-70417307 | MS.gene75692:CDS |
| AACAAAGGCTTCTCAACTTC+TGG | 0.283514 | 3.3:+70417550 | None:intergenic |
| CGACATGTACTTAGCGAATA+TGG | 0.292871 | 3.3:-70417256 | MS.gene75692:CDS |
| CTTGTGGGGCAGGCATTGTT+TGG | 0.310912 | 3.3:-70417613 | MS.gene75692:CDS |
| CAACAAAGGTGCTCGTGTTT+TGG | 0.312169 | 3.3:-70417698 | MS.gene75692:CDS |
| TCAATAGCCCCTTCACTATC+TGG | 0.313851 | 3.3:+70417496 | None:intergenic |
| TATCAGCTCACAAAGCTATT+AGG | 0.326867 | 3.3:-70417814 | MS.gene75692:CDS |
| AGCCTTTGTTTGAATTGGTT+TGG | 0.328022 | 3.3:-70417537 | MS.gene75692:CDS |
| TGAGAAGCCTTTGTTTGAAT+TGG | 0.342314 | 3.3:-70417542 | MS.gene75692:CDS |
| GCTTCGTTTGGCTAAAGATT+TGG | 0.342769 | 3.3:-70417728 | MS.gene75692:CDS |
| GGCCTTCAGCTCTCTGTGCC+TGG | 0.343152 | 3.3:+70418311 | None:intergenic |
| AACCGGGGAGGGACTTGAAT+GGG | 0.361675 | 3.3:-70417158 | MS.gene75692:CDS |
| CATCTCCTCAAGGATGTTCC+TGG | 0.370213 | 3.3:-70417442 | MS.gene75692:CDS |
| AACAGTCTCGATTGTGAGTC+CGG | 0.377576 | 3.3:+70417114 | None:intergenic |
| CCTGCCACTGTCTTTGCAAT+AGG | 0.391107 | 3.3:-70418289 | MS.gene75692:CDS |
| TCAACTTGGTCAAGAATTGC+TGG | 0.392629 | 3.3:+70417319 | None:intergenic |
| ATTGGATGCAAGACAGGATA+TGG | 0.394068 | 3.3:-70417968 | MS.gene75692:CDS |
| CAAGATGGACTTGCCACAAC+CGG | 0.394566 | 3.3:-70417175 | MS.gene75692:CDS |
| TCAAGAATTGCTGGTCCACC+TGG | 0.408988 | 3.3:+70417328 | None:intergenic |
| ACTCGTAAGAAATGTGGTTT+TGG | 0.412962 | 3.3:-70418743 | None:intergenic |
| TGAGTACATGGCACCTTCAT+TGG | 0.415295 | 3.3:-70417986 | MS.gene75692:CDS |
| TCTTGATAGTCTTGTGGGGC+AGG | 0.418345 | 3.3:-70417623 | MS.gene75692:CDS |
| AACAAAGGCTATCAAGGAAT+GGG | 0.424210 | 3.3:-70417908 | MS.gene75692:CDS |
| TGGTGGCACGGTGCTTCGTT+TGG | 0.426992 | 3.3:-70417740 | MS.gene75692:CDS |
| AGATGAGTAATCTTTGACTT+CGG | 0.435403 | 3.3:+70417880 | None:intergenic |
| TTCAAGTCCCTCCCCGGTTG+TGG | 0.437012 | 3.3:+70417162 | None:intergenic |
| ACTCATCTTGATAGTCTTGT+GGG | 0.449676 | 3.3:-70417628 | MS.gene75692:CDS |
| CCTATTGCAAAGACAGTGGC+AGG | 0.460571 | 3.3:+70418289 | None:intergenic |
| ACCTTCATTGGATGCAAGAC+AGG | 0.464180 | 3.3:-70417974 | MS.gene75692:CDS |
| GATAGTGAAGGGGCTATTGA+TGG | 0.464379 | 3.3:-70417493 | MS.gene75692:CDS |
| TGCGTGTGTGTTATTCATCT+TGG | 0.470585 | 3.3:-70417221 | MS.gene75692:CDS |
| ATTTCAGCCTTTGAATATCT+CGG | 0.471656 | 3.3:-70417380 | MS.gene75692:CDS |
| GGCTGCAACAAAGGCTATCA+AGG | 0.472973 | 3.3:-70417914 | MS.gene75692:CDS |
| TTGGTATGTGAGGCAGTCTT+CGG | 0.473157 | 3.3:-70418720 | MS.gene75692:CDS |
| GGGCAGGCATTGTTTGGAGA+TGG | 0.475842 | 3.3:-70417607 | MS.gene75692:CDS |
| ATCATATAACGCTTCACAGA+CGG | 0.478105 | 3.3:+70417784 | None:intergenic |
| ATGTTCTTTGAGACAAGGCC+AGG | 0.484686 | 3.3:+70417424 | None:intergenic |
| TACTCATCTTGATAGTCTTG+TGG | 0.487158 | 3.3:-70417629 | MS.gene75692:CDS |
| ATCACTGCAGTTACTTTCCG+TGG | 0.495969 | 3.3:-70417661 | MS.gene75692:CDS |
| CAACCGGGGAGGGACTTGAA+TGG | 0.499400 | 3.3:-70417159 | MS.gene75692:CDS |
| GGTGCAGCAGCTGTGATTGT+TGG | 0.502726 | 3.3:-70417586 | MS.gene75692:CDS |
| AGGAAAAGAGGCTGCAACAA+AGG | 0.503571 | 3.3:-70417923 | MS.gene75692:CDS |
| TCATATAACGCTTCACAGAC+GGG | 0.503757 | 3.3:+70417785 | None:intergenic |
| CAACAAAGGCTATCAAGGAA+TGG | 0.506508 | 3.3:-70417909 | MS.gene75692:CDS |
| TCCTGTCTTGCATCCAATGA+AGG | 0.510738 | 3.3:+70417973 | None:intergenic |
| GTGATACGGAAGTAAAAGTC+AGG | 0.511667 | 3.3:+70418226 | None:intergenic |
| CAGGAACATCCTTGAGGAGA+TGG | 0.526587 | 3.3:+70417443 | None:intergenic |
| AGCCTAATTTGAGTTCAACT+TGG | 0.530563 | 3.3:+70417305 | None:intergenic |
| GATGGTCACCTTCGAGAAGC+AGG | 0.531933 | 3.3:-70417475 | MS.gene75692:CDS |
| TGTGTTCACTGTTTGTGATA+CGG | 0.533500 | 3.3:+70418212 | None:intergenic |
| TCCTAGTTTATGTGAGTACA+TGG | 0.536509 | 3.3:-70417998 | MS.gene75692:CDS |
| ACCCCATTCAAGTCCCTCCC+CGG | 0.537173 | 3.3:+70417156 | None:intergenic |
| TGGGTGCGCGATCCAAAAGA+TGG | 0.539710 | 3.3:+70417348 | None:intergenic |
| GGCTTCTCAACTTCTGGCAA+CGG | 0.544110 | 3.3:+70417556 | None:intergenic |
| CGCCAGGCACAGAGAGCTGA+AGG | 0.545066 | 3.3:-70418313 | MS.gene75692:CDS |
| TATATATCTTACACATGCGC+TGG | 0.547544 | 3.3:+70418167 | None:intergenic |
| AGTACCAAAGCTAGGAAAAG+AGG | 0.551914 | 3.3:-70417935 | MS.gene75692:CDS |
| AAGATGGACTTGCCACAACC+GGG | 0.556253 | 3.3:-70417174 | MS.gene75692:CDS |
| AGGAGGAAATCAAAACAAGA+TGG | 0.563625 | 3.3:-70417190 | MS.gene75692:CDS |
| CTATCAAGATGAGTATCACT+AGG | 0.565719 | 3.3:+70417637 | None:intergenic |
| GGACTTGCCACAACCGGGGA+GGG | 0.566191 | 3.3:-70417169 | MS.gene75692:CDS |
| CATTGAGAAGGCTCTTGTTG+AGG | 0.569802 | 3.3:-70417404 | MS.gene75692:CDS |
| TCTCAATGTTCTTTGAGACA+AGG | 0.571904 | 3.3:+70417419 | None:intergenic |
| CAATCGTTCCAGATAGTGAA+GGG | 0.573996 | 3.3:-70417504 | MS.gene75692:CDS |
| TTTGACTGAAGAGATTCTGA+AGG | 0.575431 | 3.3:-70418025 | MS.gene75692:CDS |
| AAGACAGGATATGGTGGTTG+TGG | 0.581715 | 3.3:-70417959 | MS.gene75692:CDS |
| GTAAAATGTGAGGATTTAGG+TGG | 0.583137 | 3.3:+70417075 | None:intergenic |
| ACAGTCTCGATTGTGAGTCC+GGG | 0.593437 | 3.3:+70417115 | None:intergenic |
| GTCCAAACCAATTCAAACAA+AGG | 0.596458 | 3.3:+70417535 | None:intergenic |
| GACAGTGAATGAGATACGCC+AGG | 0.598521 | 3.3:-70418329 | MS.gene75692:intron |
| GTGAGCTGATAGTCAGCACC+AGG | 0.599126 | 3.3:+70417826 | None:intergenic |
| TTGTAATCCGAGATATTCAA+AGG | 0.602211 | 3.3:+70417373 | None:intergenic |
| AGGCATATCCACACCACTTG+TGG | 0.604163 | 3.3:+70417846 | None:intergenic |
| ACAAGTGGTGTGGATATGCC+TGG | 0.608099 | 3.3:-70417844 | MS.gene75692:CDS |
| ATGTCAGTCCTGCTTCTCGA+AGG | 0.612769 | 3.3:+70417467 | None:intergenic |
| ACTGACATTCCATCTCCTCA+AGG | 0.613763 | 3.3:-70417452 | MS.gene75692:CDS |
| GTTGTGGAAGTACCAAAGCT+AGG | 0.617435 | 3.3:-70417943 | MS.gene75692:CDS |
| ACAATCGTTCCAGATAGTGA+AGG | 0.620808 | 3.3:-70417505 | MS.gene75692:CDS |
| GGATTTAGGTGGACACACTA+CGG | 0.621942 | 3.3:+70417086 | None:intergenic |
| GCCATGTACTCACATAAACT+AGG | 0.622323 | 3.3:+70417997 | None:intergenic |
| TCATCTTGGATGAGATGAGG+AGG | 0.622546 | 3.3:-70417207 | MS.gene75692:CDS |
| TATTCATCTTGGATGAGATG+AGG | 0.624035 | 3.3:-70417210 | MS.gene75692:CDS |
| TGTCTCAAAGAACATTGAGA+AGG | 0.627187 | 3.3:-70417416 | MS.gene75692:CDS |
| ACCGGGGAGGGACTTGAATG+GGG | 0.631333 | 3.3:-70417157 | MS.gene75692:CDS |
| CAAGAATTGCTGGTCCACCT+GGG | 0.631788 | 3.3:+70417329 | None:intergenic |
| CTACACAGTCATGCGCAAGA+TGG | 0.639724 | 3.3:-70418696 | MS.gene75692:intron |
| GATGAGTATCACTAGGTCCA+CGG | 0.642251 | 3.3:+70417644 | None:intergenic |
| CGTTATATGATGTATCAACA+AGG | 0.650243 | 3.3:-70417772 | MS.gene75692:CDS |
| CTCATCTTGATAGTCTTGTG+GGG | 0.651714 | 3.3:-70417627 | MS.gene75692:CDS |
| TTCGCTAAGTACATGTCGAG+TGG | 0.653182 | 3.3:+70417261 | None:intergenic |
| ACAAAGGCTATCAAGGAATG+GGG | 0.667647 | 3.3:-70417907 | MS.gene75692:CDS |
| TGGACTTGCCACAACCGGGG+AGG | 0.669015 | 3.3:-70417170 | MS.gene75692:CDS |
| CAAGGCCAGGAACATCCTTG+AGG | 0.680717 | 3.3:+70417437 | None:intergenic |
| GATTTGGCTGAAAACAACAA+AGG | 0.694413 | 3.3:-70417712 | MS.gene75692:CDS |
| AATCGTTCCAGATAGTGAAG+GGG | 0.700404 | 3.3:-70417503 | MS.gene75692:CDS |
| AGATGGACTTGCCACAACCG+GGG | 0.700869 | 3.3:-70417173 | MS.gene75692:CDS |
| CTATTGCAAAGACAGTGGCA+GGG | 0.708075 | 3.3:+70418290 | None:intergenic |
| AGTGCCTATTGCAAAGACAG+TGG | 0.727850 | 3.3:+70418285 | None:intergenic |
| GGATGCAAGACAGGATATGG+TGG | 0.728808 | 3.3:-70417965 | MS.gene75692:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAAAAAAATGAGTT+AGG | + | chr3.3:70417167-70417186 | None:intergenic | 10.0% |
| !! | ACATAAAAGATATATAATAT+AGG | + | chr3.3:70417687-70417706 | None:intergenic | 10.0% |
| !! | AATAATTAGTACTAATTAGC+CGG | - | chr3.3:70417286-70417305 | MS.gene75692:CDS | 20.0% |
| !! | TTTATATTTCTTCATTGTGA+TGG | - | chr3.3:70417469-70417488 | MS.gene75692:CDS | 20.0% |
| ! | AAATGAACTTGAGAAGAATT+TGG | + | chr3.3:70417444-70417463 | None:intergenic | 25.0% |
| ! | TAAAAAAATGAGTTAGGTGA+GGG | + | chr3.3:70417161-70417180 | None:intergenic | 25.0% |
| ! | TAGTGTTACATTACAACATA+TGG | + | chr3.3:70417340-70417359 | None:intergenic | 25.0% |
| ! | TTAAAAAAATGAGTTAGGTG+AGG | + | chr3.3:70417162-70417181 | None:intergenic | 25.0% |
| ACATTACAACATATGGATGA+TGG | + | chr3.3:70417333-70417352 | None:intergenic | 30.0% | |
| ATTTCAGCCTTTGAATATCT+CGG | - | chr3.3:70418442-70418461 | MS.gene75692:intron | 30.0% | |
| CGTTATATGATGTATCAACA+AGG | - | chr3.3:70418050-70418069 | MS.gene75692:CDS | 30.0% | |
| GGATCAAATAAGCATCATTA+TGG | + | chr3.3:70417312-70417331 | None:intergenic | 30.0% | |
| TTGTAATCCGAGATATTCAA+AGG | + | chr3.3:70418452-70418471 | None:intergenic | 30.0% | |
| ! | AGATGAGTAATCTTTGACTT+CGG | + | chr3.3:70417945-70417964 | None:intergenic | 30.0% |
| AACAAAGGCTATCAAGGAAT+GGG | - | chr3.3:70417914-70417933 | MS.gene75692:CDS | 35.0% | |
| AGGAGGAAATCAAAACAAGA+TGG | - | chr3.3:70418632-70418651 | MS.gene75692:intron | 35.0% | |
| ATCATATAACGCTTCACAGA+CGG | + | chr3.3:70418041-70418060 | None:intergenic | 35.0% | |
| CAAATAAGCATCATTATGGC+CGG | + | chr3.3:70417308-70417327 | None:intergenic | 35.0% | |
| CTATCAAGATGAGTATCACT+AGG | + | chr3.3:70418188-70418207 | None:intergenic | 35.0% | |
| GAACTTGAGAAGAATTTGGT+TGG | + | chr3.3:70417440-70417459 | None:intergenic | 35.0% | |
| GATTTGGCTGAAAACAACAA+AGG | - | chr3.3:70418110-70418129 | MS.gene75692:intron | 35.0% | |
| GTCCAAACCAATTCAAACAA+AGG | + | chr3.3:70418290-70418309 | None:intergenic | 35.0% | |
| TATATATCTTACACATGCGC+TGG | + | chr3.3:70417658-70417677 | None:intergenic | 35.0% | |
| TATCAGCTCACAAAGCTATT+AGG | - | chr3.3:70418008-70418027 | MS.gene75692:CDS | 35.0% | |
| TATTCATCTTGGATGAGATG+AGG | - | chr3.3:70418612-70418631 | MS.gene75692:intron | 35.0% | |
| TCCTAGTTTATGTGAGTACA+TGG | - | chr3.3:70417824-70417843 | MS.gene75692:CDS | 35.0% | |
| TGTCTCAAAGAACATTGAGA+AGG | - | chr3.3:70418406-70418425 | MS.gene75692:intron | 35.0% | |
| TGTGTTCACTGTTTGTGATA+CGG | + | chr3.3:70417613-70417632 | None:intergenic | 35.0% | |
| TTCTGTGTGAGAAATGAGAA+TGG | + | chr3.3:70417208-70417227 | None:intergenic | 35.0% | |
| TTGTGTGAGAAAATGTTGTG+TGG | + | chr3.3:70417378-70417397 | None:intergenic | 35.0% | |
| TTTGACTGAAGAGATTCTGA+AGG | - | chr3.3:70417797-70417816 | MS.gene75692:CDS | 35.0% | |
| ! | AGCCTAATTTGAGTTCAACT+TGG | + | chr3.3:70418520-70418539 | None:intergenic | 35.0% |
| ! | AGCCTTTGTTTGAATTGGTT+TGG | - | chr3.3:70418285-70418304 | MS.gene75692:CDS | 35.0% |
| ! | CGGATTACAATTCCATCTTT+TGG | - | chr3.3:70418462-70418481 | MS.gene75692:intron | 35.0% |
| ! | GACCAAGTTGAACTCAAATT+AGG | - | chr3.3:70418515-70418534 | MS.gene75692:intron | 35.0% |
| ! | TACTCATCTTGATAGTCTTG+TGG | - | chr3.3:70418193-70418212 | MS.gene75692:CDS | 35.0% |
| ! | TATGCTGTGTATGACTTTTC+AGG | - | chr3.3:70417741-70417760 | MS.gene75692:CDS | 35.0% |
| ! | TGAGAAGCCTTTGTTTGAAT+TGG | - | chr3.3:70418280-70418299 | MS.gene75692:CDS | 35.0% |
| !! | ACTCATCTTGATAGTCTTGT+GGG | - | chr3.3:70418194-70418213 | MS.gene75692:CDS | 35.0% |
| !! | ATTTGGTTGGTAAGAGAAGA+AGG | + | chr3.3:70417427-70417446 | None:intergenic | 35.0% |
| !! | TATCAACAAGGTTGTTTTGC+TGG | - | chr3.3:70418062-70418081 | MS.gene75692:CDS | 35.0% |
| !! | TCTCAATGTTCTTTGAGACA+AGG | + | chr3.3:70418406-70418425 | None:intergenic | 35.0% |
| !!! | CTAATTTTTTGCACCACAAG+TGG | - | chr3.3:70417963-70417982 | MS.gene75692:CDS | 35.0% |
| AAAAATGAGTTAGGTGAGGG+AGG | + | chr3.3:70417158-70417177 | None:intergenic | 40.0% | |
| AACAAAGGCTTCTCAACTTC+TGG | + | chr3.3:70418275-70418294 | None:intergenic | 40.0% | |
| AATCGTTCCAGATAGTGAAG+GGG | - | chr3.3:70418319-70418338 | MS.gene75692:CDS | 40.0% | |
| ACAAAGGCTATCAAGGAATG+GGG | - | chr3.3:70417915-70417934 | MS.gene75692:CDS | 40.0% | |
| ACAATCGTTCCAGATAGTGA+AGG | - | chr3.3:70418317-70418336 | MS.gene75692:CDS | 40.0% | |
| AGTACCAAAGCTAGGAAAAG+AGG | - | chr3.3:70417887-70417906 | MS.gene75692:CDS | 40.0% | |
| ATTGGATGCAAGACAGGATA+TGG | - | chr3.3:70417854-70417873 | MS.gene75692:CDS | 40.0% | |
| CAACAAAGGCTATCAAGGAA+TGG | - | chr3.3:70417913-70417932 | MS.gene75692:CDS | 40.0% | |
| CAATCGTTCCAGATAGTGAA+GGG | - | chr3.3:70418318-70418337 | MS.gene75692:CDS | 40.0% | |
| CATTTCTCACACAGAACACT+AGG | - | chr3.3:70417212-70417231 | MS.gene75692:CDS | 40.0% | |
| CGACATGTACTTAGCGAATA+TGG | - | chr3.3:70418566-70418585 | MS.gene75692:intron | 40.0% | |
| GCCATGTACTCACATAAACT+AGG | + | chr3.3:70417828-70417847 | None:intergenic | 40.0% | |
| GCTTCGTTTGGCTAAAGATT+TGG | - | chr3.3:70418094-70418113 | MS.gene75692:intron | 40.0% | |
| GTGATACGGAAGTAAAAGTC+AGG | + | chr3.3:70417599-70417618 | None:intergenic | 40.0% | |
| TCAACTTGGTCAAGAATTGC+TGG | + | chr3.3:70418506-70418525 | None:intergenic | 40.0% | |
| TCATATAACGCTTCACAGAC+GGG | + | chr3.3:70418040-70418059 | None:intergenic | 40.0% | |
| ! | CTCTGATCAACACAGTTTTG+AGG | + | chr3.3:70417569-70417588 | None:intergenic | 40.0% |
| ! | TGCGTGTGTGTTATTCATCT+TGG | - | chr3.3:70418601-70418620 | MS.gene75692:intron | 40.0% |
| !! | CTCATCTTGATAGTCTTGTG+GGG | - | chr3.3:70418195-70418214 | MS.gene75692:CDS | 40.0% |
| !!! | TCGTGTTTTGGTGGTTTGTT+CGG | - | chr3.3:70418136-70418155 | MS.gene75692:intron | 40.0% |
| AACAGTCTCGATTGTGAGTC+CGG | + | chr3.3:70418711-70418730 | None:intergenic | 45.0% | |
| AAGACAGGATATGGTGGTTG+TGG | - | chr3.3:70417863-70417882 | MS.gene75692:CDS | 45.0% | |
| ACCTTCATTGGATGCAAGAC+AGG | - | chr3.3:70417848-70417867 | MS.gene75692:CDS | 45.0% | |
| ACTGACATTCCATCTCCTCA+AGG | - | chr3.3:70418370-70418389 | MS.gene75692:intron | 45.0% | |
| AGGAAAAGAGGCTGCAACAA+AGG | - | chr3.3:70417899-70417918 | MS.gene75692:CDS | 45.0% | |
| AGTGCCTATTGCAAAGACAG+TGG | + | chr3.3:70417540-70417559 | None:intergenic | 45.0% | |
| CATTGAGAAGGCTCTTGTTG+AGG | - | chr3.3:70418418-70418437 | MS.gene75692:intron | 45.0% | |
| CTATTGCAAAGACAGTGGCA+GGG | + | chr3.3:70417535-70417554 | None:intergenic | 45.0% | |
| GATAGTGAAGGGGCTATTGA+TGG | - | chr3.3:70418329-70418348 | MS.gene75692:intron | 45.0% | |
| GATGAGTATCACTAGGTCCA+CGG | + | chr3.3:70418181-70418200 | None:intergenic | 45.0% | |
| TCAATAGCCCCTTCACTATC+TGG | + | chr3.3:70418329-70418348 | None:intergenic | 45.0% | |
| TCATCTTGGATGAGATGAGG+AGG | - | chr3.3:70418615-70418634 | MS.gene75692:intron | 45.0% | |
| TCCTGTCTTGCATCCAATGA+AGG | + | chr3.3:70417852-70417871 | None:intergenic | 45.0% | |
| TGAGTACATGGCACCTTCAT+TGG | - | chr3.3:70417836-70417855 | MS.gene75692:CDS | 45.0% | |
| TTCGCTAAGTACATGTCGAG+TGG | + | chr3.3:70418564-70418583 | None:intergenic | 45.0% | |
| TTGGTATGTGAGGCAGTCTT+CGG | - | chr3.3:70417102-70417121 | MS.gene75692:CDS | 45.0% | |
| ! | ATCACTGCAGTTACTTTCCG+TGG | - | chr3.3:70418161-70418180 | MS.gene75692:intron | 45.0% |
| ! | CTTGAATGGGGTGTGCTTTT+CGG | - | chr3.3:70418677-70418696 | MS.gene75692:intron | 45.0% |
| ! | TTTTTGCACCACAAGTGGTG+TGG | - | chr3.3:70417968-70417987 | MS.gene75692:CDS | 45.0% |
| !! | ATGTTCTTTGAGACAAGGCC+AGG | + | chr3.3:70418401-70418420 | None:intergenic | 45.0% |
| !! | CAACAAGGTTGTTTTGCTGG+TGG | - | chr3.3:70418065-70418084 | MS.gene75692:intron | 45.0% |
| !! | GTTGTGGAAGTACCAAAGCT+AGG | - | chr3.3:70417879-70417898 | MS.gene75692:CDS | 45.0% |
| !!! | CAACAAAGGTGCTCGTGTTT+TGG | - | chr3.3:70418124-70418143 | MS.gene75692:intron | 45.0% |
| !!! | GTGGTTTTGGTTGGTATGTG+AGG | - | chr3.3:70417092-70417111 | MS.gene75692:CDS | 45.0% |
| ACAAGTGGTGTGGATATGCC+TGG | - | chr3.3:70417978-70417997 | MS.gene75692:CDS | 50.0% | |
| ACAGTCTCGATTGTGAGTCC+GGG | + | chr3.3:70418710-70418729 | None:intergenic | 50.0% | |
| AGGCATATCCACACCACTTG+TGG | + | chr3.3:70417979-70417998 | None:intergenic | 50.0% | |
| ATGTCAGTCCTGCTTCTCGA+AGG | + | chr3.3:70418358-70418377 | None:intergenic | 50.0% | |
| CAAGAATTGCTGGTCCACCT+GGG | + | chr3.3:70418496-70418515 | None:intergenic | 50.0% | |
| CAGGAACATCCTTGAGGAGA+TGG | + | chr3.3:70418382-70418401 | None:intergenic | 50.0% | |
| CATCTCCTCAAGGATGTTCC+TGG | - | chr3.3:70418380-70418399 | MS.gene75692:intron | 50.0% | |
| CCTATTGCAAAGACAGTGGC+AGG | + | chr3.3:70417536-70417555 | None:intergenic | 50.0% | |
| CCTGCCACTGTCTTTGCAAT+AGG | - | chr3.3:70417533-70417552 | MS.gene75692:CDS | 50.0% | |
| CTACACAGTCATGCGCAAGA+TGG | - | chr3.3:70417126-70417145 | MS.gene75692:CDS | 50.0% | |
| GACAGTGAATGAGATACGCC+AGG | - | chr3.3:70417493-70417512 | MS.gene75692:CDS | 50.0% | |
| GGATGCAAGACAGGATATGG+TGG | - | chr3.3:70417857-70417876 | MS.gene75692:CDS | 50.0% | |
| GGCTGCAACAAAGGCTATCA+AGG | - | chr3.3:70417908-70417927 | MS.gene75692:CDS | 50.0% | |
| GGCTTCTCAACTTCTGGCAA+CGG | + | chr3.3:70418269-70418288 | None:intergenic | 50.0% | |
| TCAAGAATTGCTGGTCCACC+TGG | + | chr3.3:70418497-70418516 | None:intergenic | 50.0% | |
| ! | AAGATGGACTTGCCACAACC+GGG | - | chr3.3:70418648-70418667 | MS.gene75692:intron | 50.0% |
| ! | CAAGATGGACTTGCCACAAC+CGG | - | chr3.3:70418647-70418666 | MS.gene75692:intron | 50.0% |
| ! | GCAGCCTCTTTTCCTAGCTT+TGG | + | chr3.3:70417894-70417913 | None:intergenic | 50.0% |
| ! | TGGGGTGTGCTTTTCGGTTT+TGG | - | chr3.3:70418683-70418702 | MS.gene75692:intron | 50.0% |
| !! | AGGTTGTTTTGCTGGTGGCA+CGG | - | chr3.3:70418070-70418089 | MS.gene75692:intron | 50.0% |
| !! | CGAGTGGCTTGCATTTTCTC+TGG | + | chr3.3:70418548-70418567 | None:intergenic | 50.0% |
| !! | GTGCTTTTCGGTTTTGGTCC+CGG | - | chr3.3:70418689-70418708 | MS.gene75692:intron | 50.0% |
| !! | TCTTGATAGTCTTGTGGGGC+AGG | - | chr3.3:70418199-70418218 | MS.gene75692:CDS | 50.0% |
| !!! | CAAAGGTGCTCGTGTTTTGG+TGG | - | chr3.3:70418127-70418146 | MS.gene75692:intron | 50.0% |
| AACCGGGGAGGGACTTGAAT+GGG | - | chr3.3:70418664-70418683 | MS.gene75692:intron | 55.0% | |
| CAAGGCCAGGAACATCCTTG+AGG | + | chr3.3:70418388-70418407 | None:intergenic | 55.0% | |
| GATGGTCACCTTCGAGAAGC+AGG | - | chr3.3:70418347-70418366 | MS.gene75692:intron | 55.0% | |
| GGTGCAGCAGCTGTGATTGT+TGG | - | chr3.3:70418236-70418255 | MS.gene75692:CDS | 55.0% | |
| GTGAGCTGATAGTCAGCACC+AGG | + | chr3.3:70417999-70418018 | None:intergenic | 55.0% | |
| TGGGTGCGCGATCCAAAAGA+TGG | + | chr3.3:70418477-70418496 | None:intergenic | 55.0% | |
| ! | AGATGGACTTGCCACAACCG+GGG | - | chr3.3:70418649-70418668 | MS.gene75692:intron | 55.0% |
| ! | ATCTTTTGGATCGCGCACCC+AGG | - | chr3.3:70418476-70418495 | MS.gene75692:intron | 55.0% |
| ! | CTTGTGGGGCAGGCATTGTT+TGG | - | chr3.3:70418209-70418228 | MS.gene75692:CDS | 55.0% |
| ! | GGGCAGGCATTGTTTGGAGA+TGG | - | chr3.3:70418215-70418234 | MS.gene75692:CDS | 55.0% |
| ACCCCATTCAAGTCCCTCCC+CGG | + | chr3.3:70418669-70418688 | None:intergenic | 60.0% | |
| ACCGGGGAGGGACTTGAATG+GGG | - | chr3.3:70418665-70418684 | MS.gene75692:intron | 60.0% | |
| CAACCGGGGAGGGACTTGAA+TGG | - | chr3.3:70418663-70418682 | MS.gene75692:intron | 60.0% | |
| TGGTGGCACGGTGCTTCGTT+TGG | - | chr3.3:70418082-70418101 | MS.gene75692:intron | 60.0% | |
| TTCAAGTCCCTCCCCGGTTG+TGG | + | chr3.3:70418663-70418682 | None:intergenic | 60.0% | |
| ! | TTTTGGATCGCGCACCCAGG+TGG | - | chr3.3:70418479-70418498 | MS.gene75692:intron | 60.0% |
| CGCCAGGCACAGAGAGCTGA+AGG | - | chr3.3:70417509-70417528 | MS.gene75692:CDS | 65.0% | |
| GGACTTGCCACAACCGGGGA+GGG | - | chr3.3:70418653-70418672 | MS.gene75692:intron | 65.0% | |
| GGCCTTCAGCTCTCTGTGCC+TGG | + | chr3.3:70417514-70417533 | None:intergenic | 65.0% | |
| TGGACTTGCCACAACCGGGG+AGG | - | chr3.3:70418652-70418671 | MS.gene75692:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 70417090 | 70418754 | 70417090 | ID=MS.gene75692 |
| chr3.3 | mRNA | 70417090 | 70418754 | 70417090 | ID=MS.gene75692.t1;Parent=MS.gene75692 |
| chr3.3 | exon | 70418697 | 70418754 | 70418697 | ID=MS.gene75692.t1.exon1;Parent=MS.gene75692.t1 |
| chr3.3 | CDS | 70418697 | 70418754 | 70418697 | ID=cds.MS.gene75692.t1;Parent=MS.gene75692.t1 |
| chr3.3 | exon | 70418179 | 70418346 | 70418179 | ID=MS.gene75692.t1.exon2;Parent=MS.gene75692.t1 |
| chr3.3 | CDS | 70418179 | 70418346 | 70418179 | ID=cds.MS.gene75692.t1;Parent=MS.gene75692.t1 |
| chr3.3 | exon | 70417090 | 70418081 | 70417090 | ID=MS.gene75692.t1.exon3;Parent=MS.gene75692.t1 |
| chr3.3 | CDS | 70417090 | 70418081 | 70417090 | ID=cds.MS.gene75692.t1;Parent=MS.gene75692.t1 |
| Gene Sequence |
| Protein sequence |
