Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055961.t1 | XP_003625315.1 | 98.7 | 156 | 2 | 0 | 1 | 156 | 39 | 194 | 3.20E-82 | 314.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055961.t1 | Q9FIG7 | 52.9 | 153 | 69 | 2 | 3 | 155 | 36 | 185 | 3.3e-40 | 166.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055961.t1 | G7KWC3 | 98.7 | 156 | 2 | 0 | 1 | 156 | 39 | 194 | 2.3e-82 | 314.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050883 | MS.gene055961 | 0.835109 | 2.03E-56 | -1.69E-46 |
| MS.gene055961 | MS.gene07004 | 0.814795 | 1.28E-51 | -1.69E-46 |
| MS.gene055961 | MS.gene072476 | 0.833457 | 5.27E-56 | -1.69E-46 |
| MS.gene055961 | MS.gene20312 | 0.807143 | 5.84E-50 | -1.69E-46 |
| MS.gene055961 | MS.gene20675 | 0.806997 | 6.27E-50 | -1.69E-46 |
| MS.gene055961 | MS.gene26401 | 0.803201 | 3.90E-49 | -1.69E-46 |
| MS.gene055961 | MS.gene26402 | 0.812378 | 4.37E-51 | -1.69E-46 |
| MS.gene055961 | MS.gene26861 | 0.810542 | 1.09E-50 | -1.69E-46 |
| MS.gene055961 | MS.gene29342 | 0.826447 | 2.70E-54 | -1.69E-46 |
| MS.gene055961 | MS.gene38706 | 0.801044 | 1.08E-48 | -1.69E-46 |
| MS.gene055961 | MS.gene48620 | 0.805822 | 1.11E-49 | -1.69E-46 |
| MS.gene055961 | MS.gene52698 | 0.84521 | 4.68E-59 | -1.69E-46 |
| MS.gene055961 | MS.gene60720 | 0.818147 | 2.28E-52 | -1.69E-46 |
| MS.gene055961 | MS.gene60721 | 0.816479 | 5.42E-52 | -1.69E-46 |
| MS.gene055961 | MS.gene60722 | 0.810624 | 1.05E-50 | -1.69E-46 |
| MS.gene055961 | MS.gene75692 | 0.8163 | 5.94E-52 | -1.69E-46 |
| MS.gene055961 | MS.gene78593 | 0.828912 | 6.90E-55 | -1.69E-46 |
| MS.gene055961 | MS.gene79273 | 0.812245 | 4.67E-51 | -1.69E-46 |
| MS.gene055961 | MS.gene79875 | 0.814428 | 1.55E-51 | -1.69E-46 |
| MS.gene055961 | MS.gene87470 | 0.80329 | 3.74E-49 | -1.69E-46 |
| MS.gene055961 | MS.gene88886 | 0.834356 | 3.14E-56 | -1.69E-46 |
| MS.gene055961 | MS.gene88887 | 0.807891 | 4.05E-50 | -1.69E-46 |
| MS.gene055961 | MS.gene88888 | 0.811294 | 7.52E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055961.t1 | MTR_7g093820 | 98.718 | 156 | 2 | 0 | 1 | 156 | 39 | 194 | 1.62e-114 | 322 |
| MS.gene055961.t1 | MTR_7g093850 | 97.436 | 156 | 4 | 0 | 1 | 156 | 39 | 194 | 4.45e-113 | 318 |
| MS.gene055961.t1 | MTR_7g093830 | 96.795 | 156 | 5 | 0 | 1 | 156 | 38 | 193 | 6.75e-112 | 315 |
| MS.gene055961.t1 | MTR_7g093790 | 79.487 | 156 | 32 | 0 | 1 | 156 | 36 | 191 | 6.12e-94 | 270 |
| MS.gene055961.t1 | MTR_7g093870 | 59.375 | 160 | 59 | 3 | 2 | 156 | 35 | 193 | 9.28e-65 | 197 |
| MS.gene055961.t1 | MTR_4g013350 | 52.229 | 157 | 73 | 2 | 1 | 156 | 42 | 197 | 9.16e-57 | 176 |
| MS.gene055961.t1 | MTR_4g013345 | 53.503 | 157 | 71 | 2 | 1 | 156 | 41 | 196 | 1.87e-56 | 175 |
| MS.gene055961.t1 | MTR_4g013335 | 51.592 | 157 | 72 | 3 | 1 | 156 | 43 | 196 | 9.91e-55 | 171 |
| MS.gene055961.t1 | MTR_1g054525 | 54.605 | 152 | 66 | 2 | 5 | 156 | 44 | 192 | 3.78e-54 | 169 |
| MS.gene055961.t1 | MTR_4g013325 | 54.110 | 146 | 66 | 1 | 11 | 156 | 55 | 199 | 1.11e-53 | 168 |
| MS.gene055961.t1 | MTR_4g013320 | 51.316 | 152 | 73 | 1 | 5 | 156 | 49 | 199 | 1.31e-53 | 168 |
| MS.gene055961.t1 | MTR_4g013330 | 50.314 | 159 | 75 | 3 | 1 | 156 | 42 | 199 | 3.23e-53 | 167 |
| MS.gene055961.t1 | MTR_4g073950 | 52.941 | 153 | 70 | 2 | 5 | 156 | 41 | 192 | 2.14e-51 | 162 |
| MS.gene055961.t1 | MTR_4g013310 | 50.658 | 152 | 72 | 2 | 5 | 156 | 49 | 197 | 9.68e-50 | 158 |
| MS.gene055961.t1 | MTR_3g105640 | 51.634 | 153 | 71 | 3 | 6 | 156 | 37 | 188 | 3.02e-49 | 157 |
| MS.gene055961.t1 | MTR_3g105630 | 49.351 | 154 | 74 | 3 | 6 | 156 | 37 | 189 | 1.12e-48 | 155 |
| MS.gene055961.t1 | MTR_7g070390 | 51.316 | 152 | 72 | 2 | 5 | 156 | 43 | 192 | 7.72e-47 | 150 |
| MS.gene055961.t1 | MTR_4g013385 | 46.711 | 152 | 79 | 2 | 5 | 156 | 41 | 190 | 4.30e-45 | 146 |
| MS.gene055961.t1 | MTR_0433s0040 | 46.711 | 152 | 79 | 2 | 5 | 156 | 41 | 190 | 4.30e-45 | 146 |
| MS.gene055961.t1 | MTR_5g096120 | 49.032 | 155 | 72 | 4 | 7 | 156 | 37 | 189 | 6.80e-44 | 143 |
| MS.gene055961.t1 | MTR_1g056370 | 48.299 | 147 | 73 | 3 | 10 | 155 | 41 | 185 | 1.21e-42 | 140 |
| MS.gene055961.t1 | MTR_4g013770 | 43.243 | 148 | 82 | 2 | 10 | 156 | 45 | 191 | 7.38e-42 | 138 |
| MS.gene055961.t1 | MTR_3g034030 | 46.358 | 151 | 76 | 4 | 7 | 156 | 39 | 185 | 5.78e-40 | 133 |
| MS.gene055961.t1 | MTR_4g078885 | 45.395 | 152 | 78 | 4 | 6 | 156 | 38 | 185 | 2.37e-39 | 131 |
| MS.gene055961.t1 | MTR_4g013355 | 40.789 | 152 | 79 | 1 | 5 | 156 | 39 | 179 | 1.35e-36 | 124 |
| MS.gene055961.t1 | MTR_4g122110 | 40.397 | 151 | 89 | 1 | 6 | 156 | 31 | 180 | 5.15e-30 | 107 |
| MS.gene055961.t1 | MTR_4g122130 | 40.397 | 151 | 89 | 1 | 6 | 156 | 31 | 180 | 9.74e-30 | 107 |
| MS.gene055961.t1 | MTR_4g049570 | 32.215 | 149 | 100 | 1 | 3 | 151 | 26 | 173 | 2.95e-21 | 85.1 |
| MS.gene055961.t1 | MTR_4g049550 | 30.822 | 146 | 100 | 1 | 6 | 151 | 29 | 173 | 1.69e-20 | 83.2 |
| MS.gene055961.t1 | MTR_1g046490 | 40.000 | 95 | 55 | 2 | 40 | 134 | 119 | 211 | 3.46e-14 | 67.8 |
| MS.gene055961.t1 | MTR_1g046800 | 41.053 | 95 | 54 | 2 | 40 | 134 | 133 | 225 | 3.51e-14 | 67.8 |
| MS.gene055961.t1 | MTR_1g046500 | 41.053 | 95 | 54 | 2 | 40 | 134 | 133 | 225 | 4.87e-14 | 67.4 |
| MS.gene055961.t1 | MTR_1g115510 | 36.154 | 130 | 75 | 5 | 33 | 155 | 225 | 353 | 4.42e-13 | 65.9 |
| MS.gene055961.t1 | MTR_4g062520 | 37.383 | 107 | 66 | 1 | 33 | 139 | 177 | 282 | 1.73e-12 | 63.9 |
| MS.gene055961.t1 | MTR_4g062470 | 37.383 | 107 | 66 | 1 | 33 | 139 | 178 | 283 | 2.23e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055961.t1 | AT5G42500 | 52.941 | 153 | 69 | 2 | 3 | 155 | 36 | 185 | 1.89e-53 | 167 |
| MS.gene055961.t1 | AT1G65870 | 52.288 | 153 | 72 | 1 | 3 | 155 | 38 | 189 | 2.54e-51 | 162 |
| MS.gene055961.t1 | AT5G42510 | 51.634 | 153 | 71 | 2 | 3 | 155 | 33 | 182 | 2.91e-51 | 162 |
| MS.gene055961.t1 | AT1G22900 | 51.634 | 153 | 71 | 2 | 3 | 155 | 44 | 193 | 1.77e-49 | 157 |
| MS.gene055961.t1 | AT5G49040 | 46.711 | 152 | 80 | 1 | 5 | 156 | 41 | 191 | 6.84e-48 | 153 |
| MS.gene055961.t1 | AT1G58170 | 45.806 | 155 | 83 | 1 | 2 | 156 | 32 | 185 | 7.93e-48 | 153 |
| MS.gene055961.t1 | AT1G55210 | 47.134 | 157 | 78 | 3 | 1 | 156 | 35 | 187 | 9.19e-48 | 153 |
| MS.gene055961.t1 | AT1G55210 | 47.134 | 157 | 78 | 3 | 1 | 156 | 35 | 187 | 9.19e-48 | 153 |
| MS.gene055961.t1 | AT3G13650 | 46.104 | 154 | 79 | 2 | 3 | 156 | 37 | 186 | 1.27e-46 | 150 |
| MS.gene055961.t1 | AT3G13662 | 49.286 | 140 | 67 | 2 | 4 | 143 | 37 | 172 | 1.07e-43 | 142 |
| MS.gene055961.t1 | AT2G21100 | 48.000 | 150 | 77 | 1 | 6 | 155 | 39 | 187 | 3.71e-43 | 141 |
| MS.gene055961.t1 | AT2G21100 | 48.000 | 150 | 77 | 1 | 6 | 155 | 39 | 187 | 3.71e-43 | 141 |
| MS.gene055961.t1 | AT2G21110 | 43.709 | 151 | 80 | 2 | 10 | 156 | 37 | 186 | 9.21e-42 | 138 |
| MS.gene055961.t1 | AT4G38700 | 44.304 | 158 | 83 | 3 | 4 | 156 | 33 | 190 | 6.22e-40 | 133 |
| MS.gene055961.t1 | AT5G49030 | 48.462 | 130 | 66 | 1 | 5 | 134 | 41 | 169 | 4.08e-38 | 137 |
| MS.gene055961.t1 | AT3G58090 | 45.522 | 134 | 72 | 1 | 22 | 155 | 139 | 271 | 4.36e-34 | 120 |
| MS.gene055961.t1 | AT3G13660 | 45.378 | 119 | 64 | 1 | 38 | 156 | 8 | 125 | 5.65e-34 | 116 |
| MS.gene055961.t1 | AT4G23690 | 34.586 | 133 | 75 | 5 | 5 | 131 | 36 | 162 | 1.71e-13 | 65.1 |
| MS.gene055961.t1 | AT3G24020 | 36.842 | 95 | 58 | 2 | 40 | 134 | 126 | 218 | 2.69e-11 | 60.1 |
| MS.gene055961.t1 | AT4G13580 | 35.789 | 95 | 59 | 2 | 40 | 134 | 127 | 219 | 6.58e-11 | 58.9 |
Find 45 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAAACACCTAACTAATAA+TGG | 0.327962 | 7.4:-15235771 | None:intergenic |
| TGGAAGTACACTTAGCATAT+TGG | 0.334562 | 7.4:+15235594 | MS.gene055961:CDS |
| ACAATGGCCATTTCTCTAAC+AGG | 0.363166 | 7.4:-15235640 | None:intergenic |
| ACAAATACCATGCTAGGTTT+TGG | 0.370876 | 7.4:-15235376 | None:intergenic |
| GGAAGTACACTTAGCATATT+GGG | 0.380807 | 7.4:+15235595 | MS.gene055961:CDS |
| AGCCTATCCCCAACAATGTT+GGG | 0.408783 | 7.4:+15235295 | None:intergenic |
| ATGGCCATTGTTGGTGGGAC+TGG | 0.413384 | 7.4:+15235652 | MS.gene055961:CDS |
| TACTTTCACGACATTGTGTC+AGG | 0.427188 | 7.4:+15235352 | MS.gene055961:CDS |
| CGTTCTGGCCCAGCCGTCAA+TGG | 0.431463 | 7.4:-15235463 | None:intergenic |
| ATGGACGATCCATTGACGGC+TGG | 0.438919 | 7.4:+15235454 | MS.gene055961:CDS |
| TATTCCGTTGATTACACTAA+AGG | 0.444889 | 7.4:+15235715 | MS.gene055961:CDS |
| GAGTGAACCTGTTAGAGAAA+TGG | 0.463422 | 7.4:+15235633 | MS.gene055961:CDS |
| TTCACTGATGGAGATTTCAA+TGG | 0.465136 | 7.4:+15235574 | MS.gene055961:CDS |
| ACAAGTTTCGAGTCACGTTC+TGG | 0.465414 | 7.4:-15235478 | None:intergenic |
| TTCTATATCACAAGAGGAGA+TGG | 0.477985 | 7.4:+15235525 | MS.gene055961:CDS |
| ATTCGGGACGGTTGTGGCGA+TGG | 0.478959 | 7.4:+15235435 | MS.gene055961:CDS |
| CGTGAAAGTAAAAGTGAAGA+TGG | 0.487615 | 7.4:-15235339 | None:intergenic |
| GTTGCCATTCGGGACGGTTG+TGG | 0.502902 | 7.4:+15235429 | MS.gene055961:CDS |
| TGGACGATCCATTGACGGCT+GGG | 0.512893 | 7.4:+15235455 | MS.gene055961:CDS |
| AGAGGAGATGGGACTAATGA+TGG | 0.528699 | 7.4:+15235537 | MS.gene055961:CDS |
| TGACTCGAAACTTGTGGGTA+AGG | 0.534298 | 7.4:+15235486 | MS.gene055961:CDS |
| GAACGTGACTCGAAACTTGT+GGG | 0.536601 | 7.4:+15235481 | MS.gene055961:CDS |
| GGCGATGGACGATCCATTGA+CGG | 0.538554 | 7.4:+15235450 | MS.gene055961:CDS |
| GTTAGAGAAATGGCCATTGT+TGG | 0.545345 | 7.4:+15235643 | MS.gene055961:CDS |
| AAACTTGTGGGTAAGGCTCA+AGG | 0.545821 | 7.4:+15235493 | MS.gene055961:CDS |
| TCAGCTACAAATACCATGCT+AGG | 0.557255 | 7.4:-15235382 | None:intergenic |
| TTACACTTCTATATCACAAG+AGG | 0.558364 | 7.4:+15235519 | MS.gene055961:CDS |
| AAATGCGTTGCCATTCGGGA+CGG | 0.561926 | 7.4:+15235423 | MS.gene055961:CDS |
| ATGACCATGGCATTCACTGA+TGG | 0.562304 | 7.4:+15235562 | MS.gene055961:CDS |
| AGAGAAATGGCCATTGTTGG+TGG | 0.569066 | 7.4:+15235646 | MS.gene055961:CDS |
| AGCTCCAGTCCCACCAACAA+TGG | 0.574074 | 7.4:-15235656 | None:intergenic |
| CACTAAAGGAGATGCCATTG+TGG | 0.590470 | 7.4:+15235729 | MS.gene055961:CDS |
| ATCGCCACAACCGTCCCGAA+TGG | 0.592145 | 7.4:-15235433 | None:intergenic |
| TCTATATCACAAGAGGAGAT+GGG | 0.592301 | 7.4:+15235526 | MS.gene055961:CDS |
| AGAACGTGACTCGAAACTTG+TGG | 0.594960 | 7.4:+15235480 | MS.gene055961:CDS |
| ATCTCCTTTAGTGTAATCAA+CGG | 0.597699 | 7.4:-15235719 | None:intergenic |
| GAGAAATGGCCATTGTTGGT+GGG | 0.599344 | 7.4:+15235647 | MS.gene055961:CDS |
| GTGAAAGTAAAAGTGAAGAT+GGG | 0.616560 | 7.4:-15235338 | None:intergenic |
| GTCAGGACCAAAACCTAGCA+TGG | 0.622028 | 7.4:+15235369 | MS.gene055961:CDS |
| TGTAGCTGAGCCCAATGGCA+AGG | 0.624333 | 7.4:+15235396 | MS.gene055961:CDS |
| ATCTCCATCAGTGAATGCCA+TGG | 0.633818 | 7.4:-15235566 | None:intergenic |
| TTTCGTACGTGGGTATGCTG+AGG | 0.640443 | 7.4:+15235684 | MS.gene055961:CDS |
| GTATTTGTAGCTGAGCCCAA+TGG | 0.650930 | 7.4:+15235391 | MS.gene055961:CDS |
| AAATATGTCATATTCCACAA+TGG | 0.686079 | 7.4:-15235743 | None:intergenic |
| ACTAATGATGGTGATGACCA+TGG | 0.702330 | 7.4:+15235549 | MS.gene055961:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAATATGTCATATTCCACAA+TGG | - | chr7.4:15235746-15235765 | None:intergenic | 25.0% |
| ATCTCCTTTAGTGTAATCAA+CGG | - | chr7.4:15235722-15235741 | None:intergenic | 30.0% | |
| GTGAAAGTAAAAGTGAAGAT+GGG | - | chr7.4:15235341-15235360 | None:intergenic | 30.0% | |
| TTACACTTCTATATCACAAG+AGG | + | chr7.4:15235519-15235538 | MS.gene055961:CDS | 30.0% | |
| ! | TATTCCGTTGATTACACTAA+AGG | + | chr7.4:15235715-15235734 | MS.gene055961:CDS | 30.0% |
| CGTGAAAGTAAAAGTGAAGA+TGG | - | chr7.4:15235342-15235361 | None:intergenic | 35.0% | |
| GTAAAAAATGCGTTGCCATT+CGG | + | chr7.4:15235418-15235437 | MS.gene055961:CDS | 35.0% | |
| TAAAAAATGCGTTGCCATTC+GGG | + | chr7.4:15235419-15235438 | MS.gene055961:CDS | 35.0% | |
| TCTATATCACAAGAGGAGAT+GGG | + | chr7.4:15235526-15235545 | MS.gene055961:CDS | 35.0% | |
| TTCACTGATGGAGATTTCAA+TGG | + | chr7.4:15235574-15235593 | MS.gene055961:CDS | 35.0% | |
| TTCTATATCACAAGAGGAGA+TGG | + | chr7.4:15235525-15235544 | MS.gene055961:CDS | 35.0% | |
| ! | ACAAATACCATGCTAGGTTT+TGG | - | chr7.4:15235379-15235398 | None:intergenic | 35.0% |
| ! | GGAAGTACACTTAGCATATT+GGG | + | chr7.4:15235595-15235614 | MS.gene055961:CDS | 35.0% |
| ! | TGGAAGTACACTTAGCATAT+TGG | + | chr7.4:15235594-15235613 | MS.gene055961:CDS | 35.0% |
| !!! | GCATTTTTTACCTTGCCATT+GGG | - | chr7.4:15235409-15235428 | None:intergenic | 35.0% |
| ACAATGGCCATTTCTCTAAC+AGG | - | chr7.4:15235643-15235662 | None:intergenic | 40.0% | |
| GAGTGAACCTGTTAGAGAAA+TGG | + | chr7.4:15235633-15235652 | MS.gene055961:CDS | 40.0% | |
| GTTAGAGAAATGGCCATTGT+TGG | + | chr7.4:15235643-15235662 | MS.gene055961:CDS | 40.0% | |
| TACTTTCACGACATTGTGTC+AGG | + | chr7.4:15235352-15235371 | MS.gene055961:CDS | 40.0% | |
| TCAGCTACAAATACCATGCT+AGG | - | chr7.4:15235385-15235404 | None:intergenic | 40.0% | |
| ! | ACTAATGATGGTGATGACCA+TGG | + | chr7.4:15235549-15235568 | MS.gene055961:CDS | 40.0% |
| !!! | CGCATTTTTTACCTTGCCAT+TGG | - | chr7.4:15235410-15235429 | None:intergenic | 40.0% |
| AAACTTGTGGGTAAGGCTCA+AGG | + | chr7.4:15235493-15235512 | MS.gene055961:CDS | 45.0% | |
| AGAACGTGACTCGAAACTTG+TGG | + | chr7.4:15235480-15235499 | MS.gene055961:CDS | 45.0% | |
| AGAGAAATGGCCATTGTTGG+TGG | + | chr7.4:15235646-15235665 | MS.gene055961:CDS | 45.0% | |
| AGAGGAGATGGGACTAATGA+TGG | + | chr7.4:15235537-15235556 | MS.gene055961:CDS | 45.0% | |
| ATCTCCATCAGTGAATGCCA+TGG | - | chr7.4:15235569-15235588 | None:intergenic | 45.0% | |
| ATGACCATGGCATTCACTGA+TGG | + | chr7.4:15235562-15235581 | MS.gene055961:CDS | 45.0% | |
| CACTAAAGGAGATGCCATTG+TGG | + | chr7.4:15235729-15235748 | MS.gene055961:CDS | 45.0% | |
| GAACGTGACTCGAAACTTGT+GGG | + | chr7.4:15235481-15235500 | MS.gene055961:CDS | 45.0% | |
| GAGAAATGGCCATTGTTGGT+GGG | + | chr7.4:15235647-15235666 | MS.gene055961:CDS | 45.0% | |
| GTATTTGTAGCTGAGCCCAA+TGG | + | chr7.4:15235391-15235410 | MS.gene055961:CDS | 45.0% | |
| TGACTCGAAACTTGTGGGTA+AGG | + | chr7.4:15235486-15235505 | MS.gene055961:CDS | 45.0% | |
| ! | ACAAGTTTCGAGTCACGTTC+TGG | - | chr7.4:15235481-15235500 | None:intergenic | 45.0% |
| ! | GAGCTTTTCGTTTCGTACGT+GGG | + | chr7.4:15235674-15235693 | MS.gene055961:CDS | 45.0% |
| AAATGCGTTGCCATTCGGGA+CGG | + | chr7.4:15235423-15235442 | MS.gene055961:CDS | 50.0% | |
| GTCAGGACCAAAACCTAGCA+TGG | + | chr7.4:15235369-15235388 | MS.gene055961:CDS | 50.0% | |
| TTTCGTACGTGGGTATGCTG+AGG | + | chr7.4:15235684-15235703 | MS.gene055961:CDS | 50.0% | |
| ! | GGAGCTTTTCGTTTCGTACG+TGG | + | chr7.4:15235673-15235692 | MS.gene055961:CDS | 50.0% |
| AGCTCCAGTCCCACCAACAA+TGG | - | chr7.4:15235659-15235678 | None:intergenic | 55.0% | |
| ATGGACGATCCATTGACGGC+TGG | + | chr7.4:15235454-15235473 | MS.gene055961:CDS | 55.0% | |
| GGCGATGGACGATCCATTGA+CGG | + | chr7.4:15235450-15235469 | MS.gene055961:CDS | 55.0% | |
| TGGACGATCCATTGACGGCT+GGG | + | chr7.4:15235455-15235474 | MS.gene055961:CDS | 55.0% | |
| TGTAGCTGAGCCCAATGGCA+AGG | + | chr7.4:15235396-15235415 | MS.gene055961:CDS | 55.0% | |
| ! | ATGGCCATTGTTGGTGGGAC+TGG | + | chr7.4:15235652-15235671 | MS.gene055961:CDS | 55.0% |
| ATCGCCACAACCGTCCCGAA+TGG | - | chr7.4:15235436-15235455 | None:intergenic | 60.0% | |
| ATTCGGGACGGTTGTGGCGA+TGG | + | chr7.4:15235435-15235454 | MS.gene055961:CDS | 60.0% | |
| GTTGCCATTCGGGACGGTTG+TGG | + | chr7.4:15235429-15235448 | MS.gene055961:CDS | 60.0% | |
| CGTTCTGGCCCAGCCGTCAA+TGG | - | chr7.4:15235466-15235485 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 15235310 | 15235780 | 15235310 | ID=MS.gene055961 |
| chr7.4 | mRNA | 15235310 | 15235780 | 15235310 | ID=MS.gene055961.t1;Parent=MS.gene055961 |
| chr7.4 | exon | 15235310 | 15235780 | 15235310 | ID=MS.gene055961.t1.exon1;Parent=MS.gene055961.t1 |
| chr7.4 | CDS | 15235310 | 15235780 | 15235310 | ID=cds.MS.gene055961.t1;Parent=MS.gene055961.t1 |
| Gene Sequence |
| Protein sequence |
