Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77715.t1 | PNY16990.1 | 58.1 | 384 | 144 | 5 | 1 | 369 | 1 | 382 | 5.10E-107 | 397.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77715.t1 | Q9FFJ8 | 32.1 | 106 | 65 | 4 | 18 | 118 | 8 | 111 | 5.5e-09 | 63.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77715.t1 | A0A2K3PNX5 | 58.1 | 384 | 144 | 5 | 1 | 369 | 1 | 382 | 3.7e-107 | 397.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049669 | MS.gene77715 | 0.815871 | 7.40E-52 | -1.69E-46 |
| MS.gene052208 | MS.gene77715 | 0.811954 | 5.41E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene77715 | 0.81184 | 5.72E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene77715 | 0.81767 | 2.92E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene77715 | 0.804694 | 1.91E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene77715 | 0.818043 | 2.41E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene77715 | 0.81474 | 1.32E-51 | -1.69E-46 |
| MS.gene056498 | MS.gene77715 | 0.82152 | 3.87E-53 | -1.69E-46 |
| MS.gene057755 | MS.gene77715 | 0.803437 | 3.49E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene77715 | 0.801567 | 8.47E-49 | -1.69E-46 |
| MS.gene059272 | MS.gene77715 | 0.820093 | 8.23E-53 | -1.69E-46 |
| MS.gene060167 | MS.gene77715 | 0.814147 | 1.79E-51 | -1.69E-46 |
| MS.gene061091 | MS.gene77715 | 0.821973 | 3.04E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77715.t1 | MTR_4g017485 | 90.455 | 220 | 21 | 0 | 149 | 368 | 1 | 220 | 8.63e-140 | 396 |
| MS.gene77715.t1 | MTR_7g105890 | 52.618 | 382 | 142 | 9 | 1 | 369 | 1 | 356 | 3.00e-127 | 370 |
| MS.gene77715.t1 | MTR_4g128540 | 50.949 | 369 | 153 | 7 | 1 | 366 | 1 | 344 | 1.40e-119 | 350 |
| MS.gene77715.t1 | MTR_0693s0050 | 61.250 | 240 | 87 | 5 | 1 | 237 | 1 | 237 | 3.89e-96 | 287 |
| MS.gene77715.t1 | MTR_4g128327 | 70.000 | 110 | 30 | 3 | 1 | 109 | 1 | 108 | 1.09e-46 | 155 |
| MS.gene77715.t1 | MTR_8g054100 | 36.842 | 152 | 88 | 4 | 1 | 148 | 11 | 158 | 4.39e-18 | 83.2 |
| MS.gene77715.t1 | MTR_1g016370 | 37.086 | 151 | 87 | 5 | 2 | 148 | 12 | 158 | 6.94e-17 | 80.9 |
| MS.gene77715.t1 | MTR_4g061370 | 37.086 | 151 | 87 | 5 | 2 | 148 | 1024 | 1170 | 1.50e-16 | 82.0 |
| MS.gene77715.t1 | MTR_1g073440 | 34.074 | 135 | 83 | 3 | 19 | 149 | 22 | 154 | 2.70e-16 | 79.3 |
| MS.gene77715.t1 | MTR_4g043620 | 22.881 | 354 | 201 | 10 | 14 | 363 | 18 | 303 | 1.64e-15 | 76.6 |
| MS.gene77715.t1 | MTR_2g435870 | 36.301 | 146 | 86 | 5 | 7 | 148 | 3 | 145 | 1.21e-14 | 73.9 |
| MS.gene77715.t1 | MTR_3g110155 | 33.929 | 168 | 101 | 6 | 3 | 166 | 13 | 174 | 1.32e-14 | 74.3 |
| MS.gene77715.t1 | MTR_8g006585 | 33.929 | 168 | 101 | 6 | 3 | 166 | 13 | 174 | 1.32e-14 | 74.3 |
| MS.gene77715.t1 | MTR_8g006695 | 33.929 | 168 | 101 | 6 | 3 | 166 | 13 | 174 | 1.32e-14 | 74.3 |
| MS.gene77715.t1 | MTR_8g069895 | 22.316 | 354 | 203 | 10 | 14 | 363 | 18 | 303 | 2.70e-14 | 73.2 |
| MS.gene77715.t1 | MTR_8g468830 | 22.792 | 351 | 206 | 10 | 23 | 369 | 25 | 314 | 4.51e-14 | 72.8 |
| MS.gene77715.t1 | MTR_2g021280 | 22.277 | 404 | 224 | 13 | 14 | 363 | 18 | 385 | 5.57e-14 | 73.2 |
| MS.gene77715.t1 | MTR_8g105430 | 33.088 | 136 | 82 | 5 | 23 | 153 | 50 | 181 | 9.85e-13 | 67.8 |
| MS.gene77715.t1 | MTR_1g080080 | 28.500 | 200 | 129 | 6 | 3 | 194 | 14 | 207 | 1.16e-12 | 68.6 |
| MS.gene77715.t1 | MTR_2g086350 | 28.500 | 200 | 129 | 6 | 3 | 194 | 14 | 207 | 1.20e-12 | 68.6 |
| MS.gene77715.t1 | MTR_2g018710 | 31.333 | 150 | 96 | 4 | 3 | 148 | 14 | 160 | 2.17e-12 | 67.8 |
| MS.gene77715.t1 | MTR_5g018260 | 23.836 | 365 | 201 | 14 | 14 | 363 | 18 | 320 | 3.17e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGACTAACAAACCTATTA+AGG | 0.181434 | 4.4:+68177667 | MS.gene77715:CDS |
| TTTGATATCTCAATCGAATT+TGG | 0.187362 | 4.4:+68177748 | MS.gene77715:CDS |
| GTAAAGTTCATTAGAATAAA+TGG | 0.218391 | 4.4:+68176902 | MS.gene77715:CDS |
| TAGGTTTGTTAGTCATGTTT+TGG | 0.255666 | 4.4:-68177661 | None:intergenic |
| GATGGTTACCAAAGGTCTTT+TGG | 0.275073 | 4.4:+68177859 | MS.gene77715:CDS |
| TTCAAAAGTAAACAAGTTAA+TGG | 0.276894 | 4.4:+68177797 | MS.gene77715:CDS |
| TCCACAGGTTGAACCAATTC+AGG | 0.302798 | 4.4:-68177359 | None:intergenic |
| CTTTGGAAGTTTCTGAAGTA+TGG | 0.306549 | 4.4:+68177043 | MS.gene77715:CDS |
| GGCCTCAAGTAATGATAAAA+TGG | 0.311908 | 4.4:+68176817 | MS.gene77715:CDS |
| GACGTGGATCATCATTTAAA+TGG | 0.341822 | 4.4:+68176924 | MS.gene77715:CDS |
| AGAGTTTGTTGCACCCTCTA+TGG | 0.342483 | 4.4:+68177334 | MS.gene77715:CDS |
| TTTCTGAAGTATGGTGAAAC+TGG | 0.344481 | 4.4:+68177052 | MS.gene77715:CDS |
| CAACTAAGCTTTCCTGTAAC+AGG | 0.356024 | 4.4:-68177088 | None:intergenic |
| ACCCTCTATGGATCCTGAAT+TGG | 0.374643 | 4.4:+68177346 | MS.gene77715:CDS |
| TTTGATGACAATTATGCAAC+TGG | 0.378059 | 4.4:+68177308 | MS.gene77715:CDS |
| TGAAGAAAGATTGGCGACTT+TGG | 0.383779 | 4.4:+68177026 | MS.gene77715:CDS |
| TTAGGATGGGATCCTGTTAC+AGG | 0.384207 | 4.4:+68177076 | MS.gene77715:CDS |
| TGATGGCCTCTTCAAAATCT+TGG | 0.394926 | 4.4:-68176958 | None:intergenic |
| ATCCTTCGATTGAGGAATAC+TGG | 0.409014 | 4.4:+68177276 | MS.gene77715:CDS |
| ATGATGATTCTAGGAAATCT+TGG | 0.417616 | 4.4:+68177966 | MS.gene77715:CDS |
| CAGCAATGACTGTTATAAAT+CGG | 0.423213 | 4.4:+68177837 | MS.gene77715:CDS |
| ATGACTAACAAACCTATTAA+GGG | 0.442092 | 4.4:+68177668 | MS.gene77715:CDS |
| CCCACCTCATTCATAAAATT+AGG | 0.455879 | 4.4:-68177527 | None:intergenic |
| AATCATCATTATGAGATTGA+TGG | 0.460371 | 4.4:+68177428 | MS.gene77715:CDS |
| CATGTGCCTACCCAAGGTCT+TGG | 0.473985 | 4.4:+68177557 | MS.gene77715:CDS |
| TAGATACTATGAAGAAAGAT+TGG | 0.475774 | 4.4:+68177017 | MS.gene77715:CDS |
| AAGTATGGTGAAACTGGATT+AGG | 0.490077 | 4.4:+68177058 | MS.gene77715:CDS |
| ATCTCAATCGAATTTGGCAT+TGG | 0.491767 | 4.4:+68177754 | MS.gene77715:CDS |
| GTGGAACATGTTAATGTTGA+GGG | 0.493344 | 4.4:+68177377 | MS.gene77715:CDS |
| CAAGACCTTGGGTAGGCACA+TGG | 0.495437 | 4.4:-68177556 | None:intergenic |
| GTGCCTACCCAAGGTCTTGG+AGG | 0.510178 | 4.4:+68177560 | MS.gene77715:CDS |
| TCAGGAGGTGCAACAAAGCT+AGG | 0.523054 | 4.4:+68177710 | MS.gene77715:CDS |
| TTGTGTACCTCCAAGACCTT+GGG | 0.536559 | 4.4:-68177567 | None:intergenic |
| GTCGGTAGATCCTTCGATTG+AGG | 0.536831 | 4.4:+68177268 | MS.gene77715:CDS |
| CTTGTGTACCTCCAAGACCT+TGG | 0.541010 | 4.4:-68177568 | None:intergenic |
| GCATTGGAGATAATGCAATC+TGG | 0.547246 | 4.4:+68177770 | MS.gene77715:CDS |
| ACTGAAGGTGCACAAGTGAC+TGG | 0.548205 | 4.4:+68177605 | MS.gene77715:CDS |
| GATTGAGAATGAAACAAGGC+GGG | 0.549521 | 4.4:+68177919 | MS.gene77715:CDS |
| AACAGTCATTGCTGTAGCAA+TGG | 0.551051 | 4.4:-68177828 | None:intergenic |
| GGTACCCATGTGCCTACCCA+AGG | 0.553541 | 4.4:+68177551 | MS.gene77715:CDS |
| AACATGTTAATGTTGAGGGG+GGG | 0.561184 | 4.4:+68177381 | MS.gene77715:CDS |
| AGCTTAGTTGTTCAGATGAG+TGG | 0.562434 | 4.4:+68177101 | MS.gene77715:CDS |
| CAGACGACATGCTTCTGAAG+TGG | 0.563314 | 4.4:+68177472 | MS.gene77715:CDS |
| TGGATCATCATTTAAATGGA+AGG | 0.564174 | 4.4:+68176928 | MS.gene77715:CDS |
| CAAGTGACTGGTCAAGGTGG+AGG | 0.567091 | 4.4:+68177617 | MS.gene77715:CDS |
| ATGGTGAAACTGGATTAGGA+TGG | 0.575573 | 4.4:+68177062 | MS.gene77715:CDS |
| CTCCAGTATTCCTCAATCGA+AGG | 0.577951 | 4.4:-68177278 | None:intergenic |
| TGGAACATGTTAATGTTGAG+GGG | 0.580928 | 4.4:+68177378 | MS.gene77715:CDS |
| TCAAGTAATGATAAAATGGA+AGG | 0.588534 | 4.4:+68176821 | MS.gene77715:CDS |
| AATGACTGTTATAAATCGGA+TGG | 0.589954 | 4.4:+68177841 | MS.gene77715:CDS |
| TGGTGAAACTGGATTAGGAT+GGG | 0.590498 | 4.4:+68177063 | MS.gene77715:CDS |
| TCAACATTAACATGTTCCAC+AGG | 0.594898 | 4.4:-68177374 | None:intergenic |
| TCCTGAATTGGTTCAACCTG+TGG | 0.597923 | 4.4:+68177358 | MS.gene77715:CDS |
| TTCATTAGAATAAATGGACG+TGG | 0.598170 | 4.4:+68176908 | MS.gene77715:CDS |
| AATCGTAAAAGAAAACGCTC+AGG | 0.598724 | 4.4:+68177692 | MS.gene77715:CDS |
| TAGTTGTTCAGATGAGTGGT+GGG | 0.602613 | 4.4:+68177105 | MS.gene77715:CDS |
| TTAGTTGTTCAGATGAGTGG+TGG | 0.603094 | 4.4:+68177104 | MS.gene77715:CDS |
| TGGAAAAGGGTAGTGAATTG+TGG | 0.603778 | 4.4:+68177879 | MS.gene77715:CDS |
| CGTAAAAGAAAACGCTCAGG+AGG | 0.613684 | 4.4:+68177695 | MS.gene77715:CDS |
| AACCAATTCAGGATCCATAG+AGG | 0.615080 | 4.4:-68177348 | None:intergenic |
| GGTGCACAAGTGACTGGTCA+AGG | 0.615876 | 4.4:+68177611 | MS.gene77715:CDS |
| GCACCTTCAGTATATTCACT+AGG | 0.618197 | 4.4:-68177593 | None:intergenic |
| TGACTAACAAACCTATTAAG+GGG | 0.621684 | 4.4:+68177669 | MS.gene77715:CDS |
| CATCATTATGAGATTGATGG+AGG | 0.622802 | 4.4:+68177431 | MS.gene77715:CDS |
| AAGACCTTGGGTAGGCACAT+GGG | 0.624761 | 4.4:-68177555 | None:intergenic |
| GGAACATGTTAATGTTGAGG+GGG | 0.640316 | 4.4:+68177379 | MS.gene77715:CDS |
| GAACATGTTAATGTTGAGGG+GGG | 0.642314 | 4.4:+68177380 | MS.gene77715:CDS |
| ACCAATTCAGGATCCATAGA+GGG | 0.643334 | 4.4:-68177347 | None:intergenic |
| TTGATGACAATTATGCAACT+GGG | 0.647938 | 4.4:+68177309 | MS.gene77715:CDS |
| TGTGGAACATGTTAATGTTG+AGG | 0.649163 | 4.4:+68177376 | MS.gene77715:CDS |
| GTACCTAGTGAATATACTGA+AGG | 0.660409 | 4.4:+68177590 | MS.gene77715:CDS |
| TTGGAGATAATGCAATCTGG+TGG | 0.662967 | 4.4:+68177773 | MS.gene77715:CDS |
| ATAAATCGGATGGTTACCAA+AGG | 0.663581 | 4.4:+68177851 | MS.gene77715:CDS |
| GCACAAGTGACTGGTCAAGG+TGG | 0.681395 | 4.4:+68177614 | MS.gene77715:CDS |
| GTTTGATTGAGAATGAAACA+AGG | 0.697331 | 4.4:+68177915 | MS.gene77715:CDS |
| GTACCTCCAAGACCTTGGGT+AGG | 0.709359 | 4.4:-68177563 | None:intergenic |
| TGATTGAGAATGAAACAAGG+CGG | 0.710780 | 4.4:+68177918 | MS.gene77715:CDS |
| TGATGACAATTATGCAACTG+GGG | 0.713435 | 4.4:+68177310 | MS.gene77715:CDS |
| GGAGGTGCAACAAAGCTAGG+TGG | 0.721408 | 4.4:+68177713 | MS.gene77715:CDS |
| TTGTCTGTAGGAGAAACCTG+AGG | 0.744782 | 4.4:+68177226 | MS.gene77715:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTTATATAAGATCTGA+AGG | + | chr4.4:68177185-68177204 | MS.gene77715:intron | 15.0% |
| !! | TAAAAAATATCGTAATAAGT+CGG | + | chr4.4:68177250-68177269 | MS.gene77715:CDS | 15.0% |
| !!! | TTATTCTTTAAAGTTTTTGA+GGG | - | chr4.4:68176995-68177014 | None:intergenic | 15.0% |
| !! | GTAAAGTTCATTAGAATAAA+TGG | + | chr4.4:68176902-68176921 | MS.gene77715:CDS | 20.0% |
| !! | TTCAAAAGTAAACAAGTTAA+TGG | + | chr4.4:68177797-68177816 | MS.gene77715:CDS | 20.0% |
| !!! | CAAAATTTCTTTTCATATTC+AGG | - | chr4.4:68176872-68176891 | None:intergenic | 20.0% |
| !!! | CTTATTCTTTAAAGTTTTTG+AGG | - | chr4.4:68176996-68177015 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGGGAATGTAAAT+AGG | - | chr4.4:68177996-68178015 | None:intergenic | 20.0% |
| ! | AATCATCATTATGAGATTGA+TGG | + | chr4.4:68177428-68177447 | MS.gene77715:CDS | 25.0% |
| ! | ATGACTAACAAACCTATTAA+GGG | + | chr4.4:68177668-68177687 | MS.gene77715:CDS | 25.0% |
| ! | TAGATACTATGAAGAAAGAT+TGG | + | chr4.4:68177017-68177036 | MS.gene77715:CDS | 25.0% |
| ! | TCAAGTAATGATAAAATGGA+AGG | + | chr4.4:68176821-68176840 | MS.gene77715:CDS | 25.0% |
| ! | TTTGATATCTCAATCGAATT+TGG | + | chr4.4:68177748-68177767 | MS.gene77715:CDS | 25.0% |
| !! | TTCCATTTTATCATTACTTG+AGG | - | chr4.4:68176822-68176841 | None:intergenic | 25.0% |
| !! | TTTGCCTAATTTTATGAATG+AGG | + | chr4.4:68177523-68177542 | MS.gene77715:CDS | 25.0% |
| AATGACTGTTATAAATCGGA+TGG | + | chr4.4:68177841-68177860 | MS.gene77715:CDS | 30.0% | |
| ATCAACTTATCTTTGTCTGT+AGG | + | chr4.4:68177214-68177233 | MS.gene77715:intron | 30.0% | |
| CAGCAATGACTGTTATAAAT+CGG | + | chr4.4:68177837-68177856 | MS.gene77715:CDS | 30.0% | |
| CATGACTAACAAACCTATTA+AGG | + | chr4.4:68177667-68177686 | MS.gene77715:CDS | 30.0% | |
| GTTTGATTGAGAATGAAACA+AGG | + | chr4.4:68177915-68177934 | MS.gene77715:CDS | 30.0% | |
| TGACTAACAAACCTATTAAG+GGG | + | chr4.4:68177669-68177688 | MS.gene77715:CDS | 30.0% | |
| TGGATCATCATTTAAATGGA+AGG | + | chr4.4:68176928-68176947 | MS.gene77715:CDS | 30.0% | |
| TTCATTAGAATAAATGGACG+TGG | + | chr4.4:68176908-68176927 | MS.gene77715:CDS | 30.0% | |
| ! | ATGATGATTCTAGGAAATCT+TGG | + | chr4.4:68177966-68177985 | MS.gene77715:CDS | 30.0% |
| ! | CCTAATTTTATGAATGAGGT+GGG | + | chr4.4:68177527-68177546 | MS.gene77715:CDS | 30.0% |
| ! | TTGATGACAATTATGCAACT+GGG | + | chr4.4:68177309-68177328 | MS.gene77715:CDS | 30.0% |
| ! | TTTGATGACAATTATGCAAC+TGG | + | chr4.4:68177308-68177327 | MS.gene77715:CDS | 30.0% |
| !! | AAGTTTTTGAGGGAACTTTT+CGG | - | chr4.4:68176985-68177004 | None:intergenic | 30.0% |
| !!! | AGGTTTGTTAGTCATGTTTT+GGG | - | chr4.4:68177663-68177682 | None:intergenic | 30.0% |
| !!! | TAGGTTTGTTAGTCATGTTT+TGG | - | chr4.4:68177664-68177683 | None:intergenic | 30.0% |
| !!! | TTACGATATTTTTTAGCCTC+AGG | - | chr4.4:68177245-68177264 | None:intergenic | 30.0% |
| AAGTATGGTGAAACTGGATT+AGG | + | chr4.4:68177058-68177077 | MS.gene77715:CDS | 35.0% | |
| AATCGTAAAAGAAAACGCTC+AGG | + | chr4.4:68177692-68177711 | MS.gene77715:CDS | 35.0% | |
| ATAAATCGGATGGTTACCAA+AGG | + | chr4.4:68177851-68177870 | MS.gene77715:CDS | 35.0% | |
| ATCTCAATCGAATTTGGCAT+TGG | + | chr4.4:68177754-68177773 | MS.gene77715:CDS | 35.0% | |
| CATCATTATGAGATTGATGG+AGG | + | chr4.4:68177431-68177450 | MS.gene77715:CDS | 35.0% | |
| CCCACCTCATTCATAAAATT+AGG | - | chr4.4:68177530-68177549 | None:intergenic | 35.0% | |
| GACGTGGATCATCATTTAAA+TGG | + | chr4.4:68176924-68176943 | MS.gene77715:CDS | 35.0% | |
| GGCCTCAAGTAATGATAAAA+TGG | + | chr4.4:68176817-68176836 | MS.gene77715:CDS | 35.0% | |
| GTACCTAGTGAATATACTGA+AGG | + | chr4.4:68177590-68177609 | MS.gene77715:CDS | 35.0% | |
| GTGGAACATGTTAATGTTGA+GGG | + | chr4.4:68177377-68177396 | MS.gene77715:CDS | 35.0% | |
| TCAACATTAACATGTTCCAC+AGG | - | chr4.4:68177377-68177396 | None:intergenic | 35.0% | |
| TGATGACAATTATGCAACTG+GGG | + | chr4.4:68177310-68177329 | MS.gene77715:CDS | 35.0% | |
| TGATTGAGAATGAAACAAGG+CGG | + | chr4.4:68177918-68177937 | MS.gene77715:CDS | 35.0% | |
| TGGAACATGTTAATGTTGAG+GGG | + | chr4.4:68177378-68177397 | MS.gene77715:CDS | 35.0% | |
| TGTGGAACATGTTAATGTTG+AGG | + | chr4.4:68177376-68177395 | MS.gene77715:CDS | 35.0% | |
| ! | AATTTTATGAATGAGGTGGG+TGG | + | chr4.4:68177530-68177549 | MS.gene77715:CDS | 35.0% |
| ! | CGGGAGATTTTTCTAAACAT+GGG | + | chr4.4:68177938-68177957 | MS.gene77715:CDS | 35.0% |
| ! | CTTTTACGATTCCCCTTAAT+AGG | - | chr4.4:68177683-68177702 | None:intergenic | 35.0% |
| ! | GCCTAATTTTATGAATGAGG+TGG | + | chr4.4:68177526-68177545 | MS.gene77715:CDS | 35.0% |
| ! | GGAGATTTTTCTAAACATGG+GGG | + | chr4.4:68177940-68177959 | MS.gene77715:CDS | 35.0% |
| ! | GGGAGATTTTTCTAAACATG+GGG | + | chr4.4:68177939-68177958 | MS.gene77715:CDS | 35.0% |
| ! | GTGGTGGGATAGAAAAATTA+AGG | + | chr4.4:68177120-68177139 | MS.gene77715:CDS | 35.0% |
| !! | ACCAAAGGTCTTTTGGAAAA+GGG | + | chr4.4:68177866-68177885 | MS.gene77715:CDS | 35.0% |
| !! | CTTTGGAAGTTTCTGAAGTA+TGG | + | chr4.4:68177043-68177062 | MS.gene77715:CDS | 35.0% |
| !! | GATTCACCAAGATTTTGAAG+AGG | + | chr4.4:68176952-68176971 | MS.gene77715:CDS | 35.0% |
| !! | TACCAAAGGTCTTTTGGAAA+AGG | + | chr4.4:68177865-68177884 | MS.gene77715:CDS | 35.0% |
| !! | TTTCTGAAGTATGGTGAAAC+TGG | + | chr4.4:68177052-68177071 | MS.gene77715:CDS | 35.0% |
| !!! | TGGAAGGACTCAGTTTTAAA+TGG | + | chr4.4:68176837-68176856 | MS.gene77715:CDS | 35.0% |
| AACAGTCATTGCTGTAGCAA+TGG | - | chr4.4:68177831-68177850 | None:intergenic | 40.0% | |
| AACATGTTAATGTTGAGGGG+GGG | + | chr4.4:68177381-68177400 | MS.gene77715:CDS | 40.0% | |
| AACCAATTCAGGATCCATAG+AGG | - | chr4.4:68177351-68177370 | None:intergenic | 40.0% | |
| ACCAATTCAGGATCCATAGA+GGG | - | chr4.4:68177350-68177369 | None:intergenic | 40.0% | |
| AGCTTAGTTGTTCAGATGAG+TGG | + | chr4.4:68177101-68177120 | MS.gene77715:CDS | 40.0% | |
| ATCCTTCGATTGAGGAATAC+TGG | + | chr4.4:68177276-68177295 | MS.gene77715:CDS | 40.0% | |
| CAACTAAGCTTTCCTGTAAC+AGG | - | chr4.4:68177091-68177110 | None:intergenic | 40.0% | |
| GAACATGTTAATGTTGAGGG+GGG | + | chr4.4:68177380-68177399 | MS.gene77715:CDS | 40.0% | |
| GATTGAGAATGAAACAAGGC+GGG | + | chr4.4:68177919-68177938 | MS.gene77715:CDS | 40.0% | |
| GCACCTTCAGTATATTCACT+AGG | - | chr4.4:68177596-68177615 | None:intergenic | 40.0% | |
| GCATTGGAGATAATGCAATC+TGG | + | chr4.4:68177770-68177789 | MS.gene77715:CDS | 40.0% | |
| GGAACATGTTAATGTTGAGG+GGG | + | chr4.4:68177379-68177398 | MS.gene77715:CDS | 40.0% | |
| TAGTTGTTCAGATGAGTGGT+GGG | + | chr4.4:68177105-68177124 | MS.gene77715:CDS | 40.0% | |
| TGAAGAAAGATTGGCGACTT+TGG | + | chr4.4:68177026-68177045 | MS.gene77715:CDS | 40.0% | |
| TGATGGCCTCTTCAAAATCT+TGG | - | chr4.4:68176961-68176980 | None:intergenic | 40.0% | |
| TGGAAAAGGGTAGTGAATTG+TGG | + | chr4.4:68177879-68177898 | MS.gene77715:CDS | 40.0% | |
| TTAGTTGTTCAGATGAGTGG+TGG | + | chr4.4:68177104-68177123 | MS.gene77715:CDS | 40.0% | |
| TTGGAGATAATGCAATCTGG+TGG | + | chr4.4:68177773-68177792 | MS.gene77715:CDS | 40.0% | |
| ! | ACCCTTTTCCAAAAGACCTT+TGG | - | chr4.4:68177870-68177889 | None:intergenic | 40.0% |
| ! | ATGGTGAAACTGGATTAGGA+TGG | + | chr4.4:68177062-68177081 | MS.gene77715:CDS | 40.0% |
| ! | GATGGTTACCAAAGGTCTTT+TGG | + | chr4.4:68177859-68177878 | MS.gene77715:CDS | 40.0% |
| ! | GCGGGAGATTTTTCTAAACA+TGG | + | chr4.4:68177937-68177956 | MS.gene77715:CDS | 40.0% |
| ! | TGGTGAAACTGGATTAGGAT+GGG | + | chr4.4:68177063-68177082 | MS.gene77715:CDS | 40.0% |
| ACATGTTAATGTTGAGGGGG+GGG | + | chr4.4:68177382-68177401 | MS.gene77715:CDS | 45.0% | |
| ACCCTCTATGGATCCTGAAT+TGG | + | chr4.4:68177346-68177365 | MS.gene77715:CDS | 45.0% | |
| CGTAAAAGAAAACGCTCAGG+AGG | + | chr4.4:68177695-68177714 | MS.gene77715:CDS | 45.0% | |
| CTCCAGTATTCCTCAATCGA+AGG | - | chr4.4:68177281-68177300 | None:intergenic | 45.0% | |
| TTAGGATGGGATCCTGTTAC+AGG | + | chr4.4:68177076-68177095 | MS.gene77715:CDS | 45.0% | |
| TTGTCTGTAGGAGAAACCTG+AGG | + | chr4.4:68177226-68177245 | MS.gene77715:intron | 45.0% | |
| TTGTGTACCTCCAAGACCTT+GGG | - | chr4.4:68177570-68177589 | None:intergenic | 45.0% | |
| ! | TCCACAGGTTGAACCAATTC+AGG | - | chr4.4:68177362-68177381 | None:intergenic | 45.0% |
| ! | TCCTGAATTGGTTCAACCTG+TGG | + | chr4.4:68177358-68177377 | MS.gene77715:CDS | 45.0% |
| ! | TGAGGGAACTTTTCGGTTGA+TGG | - | chr4.4:68176978-68176997 | None:intergenic | 45.0% |
| ! | TGGGGGATGATGATGATTCT+AGG | + | chr4.4:68177957-68177976 | MS.gene77715:CDS | 45.0% |
| !! | AGAGTTTGTTGCACCCTCTA+TGG | + | chr4.4:68177334-68177353 | MS.gene77715:CDS | 45.0% |
| AAGACCTTGGGTAGGCACAT+GGG | - | chr4.4:68177558-68177577 | None:intergenic | 50.0% | |
| CTTGTGTACCTCCAAGACCT+TGG | - | chr4.4:68177571-68177590 | None:intergenic | 50.0% | |
| GGGGGATAAAGAAAGTGGTG+GGG | + | chr4.4:68177400-68177419 | MS.gene77715:CDS | 50.0% | |
| GGGGGGATAAAGAAAGTGGT+GGG | + | chr4.4:68177399-68177418 | MS.gene77715:CDS | 50.0% | |
| GTCGGTAGATCCTTCGATTG+AGG | + | chr4.4:68177268-68177287 | MS.gene77715:CDS | 50.0% | |
| ! | ACTGAAGGTGCACAAGTGAC+TGG | + | chr4.4:68177605-68177624 | MS.gene77715:CDS | 50.0% |
| ! | CAGACGACATGCTTCTGAAG+TGG | + | chr4.4:68177472-68177491 | MS.gene77715:CDS | 50.0% |
| ! | TCAGGAGGTGCAACAAAGCT+AGG | + | chr4.4:68177710-68177729 | MS.gene77715:CDS | 50.0% |
| CAAGACCTTGGGTAGGCACA+TGG | - | chr4.4:68177559-68177578 | None:intergenic | 55.0% | |
| CATGTGCCTACCCAAGGTCT+TGG | + | chr4.4:68177557-68177576 | MS.gene77715:CDS | 55.0% | |
| GAGGGGGGGGATAAAGAAAG+TGG | + | chr4.4:68177395-68177414 | MS.gene77715:CDS | 55.0% | |
| GGGGGGGATAAAGAAAGTGG+TGG | + | chr4.4:68177398-68177417 | MS.gene77715:CDS | 55.0% | |
| GTACCTCCAAGACCTTGGGT+AGG | - | chr4.4:68177566-68177585 | None:intergenic | 55.0% | |
| ! | CAAGTGACTGGTCAAGGTGG+AGG | + | chr4.4:68177617-68177636 | MS.gene77715:CDS | 55.0% |
| ! | GCACAAGTGACTGGTCAAGG+TGG | + | chr4.4:68177614-68177633 | MS.gene77715:CDS | 55.0% |
| ! | GGAGGTGCAACAAAGCTAGG+TGG | + | chr4.4:68177713-68177732 | MS.gene77715:CDS | 55.0% |
| ! | GGTGCACAAGTGACTGGTCA+AGG | + | chr4.4:68177611-68177630 | MS.gene77715:CDS | 55.0% |
| GGTACCCATGTGCCTACCCA+AGG | + | chr4.4:68177551-68177570 | MS.gene77715:CDS | 60.0% | |
| GTGCCTACCCAAGGTCTTGG+AGG | + | chr4.4:68177560-68177579 | MS.gene77715:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 68176815 | 68178018 | 68176815 | ID=MS.gene77715 |
| chr4.4 | mRNA | 68176815 | 68178018 | 68176815 | ID=MS.gene77715.t1;Parent=MS.gene77715 |
| chr4.4 | exon | 68176815 | 68177141 | 68176815 | ID=MS.gene77715.t1.exon1;Parent=MS.gene77715.t1 |
| chr4.4 | CDS | 68176815 | 68177141 | 68176815 | ID=cds.MS.gene77715.t1;Parent=MS.gene77715.t1 |
| chr4.4 | exon | 68177236 | 68178018 | 68177236 | ID=MS.gene77715.t1.exon2;Parent=MS.gene77715.t1 |
| chr4.4 | CDS | 68177236 | 68178018 | 68177236 | ID=cds.MS.gene77715.t1;Parent=MS.gene77715.t1 |
| Gene Sequence |
| Protein sequence |
