Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77862.t1 | PNX56744.1 | 73.2 | 365 | 91 | 3 | 76 | 438 | 1 | 360 | 1.80E-154 | 555.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77862.t1 | P08770 | 35.0 | 346 | 199 | 9 | 112 | 443 | 134 | 467 | 1.6e-47 | 191.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77862.t1 | A0A2K3JRT3 | 73.2 | 365 | 91 | 3 | 76 | 438 | 1 | 360 | 1.3e-154 | 555.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene77862 | 0.812458 | 4.20E-51 | -1.69E-46 |
| MS.gene052447 | MS.gene77862 | 0.801228 | 9.94E-49 | -1.69E-46 |
| MS.gene055056 | MS.gene77862 | 0.821315 | 4.31E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene77862 | 0.801993 | 6.93E-49 | -1.69E-46 |
| MS.gene058515 | MS.gene77862 | 0.839123 | 1.91E-57 | -1.69E-46 |
| MS.gene059276 | MS.gene77862 | 0.853189 | 2.82E-61 | -1.69E-46 |
| MS.gene059460 | MS.gene77862 | 0.802976 | 4.34E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene77862 | 0.832046 | 1.18E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77862.t1 | MTR_4g107900 | 81.053 | 95 | 18 | 0 | 177 | 271 | 86 | 180 | 8.68e-50 | 167 |
| MS.gene77862.t1 | MTR_4g107900 | 57.576 | 99 | 36 | 1 | 23 | 115 | 22 | 120 | 7.07e-26 | 103 |
| MS.gene77862.t1 | MTR_7g106390 | 81.053 | 95 | 18 | 0 | 177 | 271 | 86 | 180 | 9.44e-50 | 167 |
| MS.gene77862.t1 | MTR_7g106390 | 57.576 | 99 | 36 | 1 | 23 | 115 | 22 | 120 | 7.43e-26 | 103 |
| MS.gene77862.t1 | MTR_6g027800 | 82.222 | 90 | 16 | 0 | 181 | 270 | 11 | 100 | 2.44e-47 | 159 |
| MS.gene77862.t1 | MTR_5g023055 | 80.519 | 77 | 15 | 0 | 177 | 253 | 32 | 108 | 2.00e-37 | 132 |
| MS.gene77862.t1 | MTR_4g120840 | 44.706 | 85 | 47 | 0 | 211 | 295 | 22 | 106 | 3.84e-20 | 85.9 |
| MS.gene77862.t1 | MTR_5g034530 | 46.269 | 67 | 36 | 0 | 353 | 419 | 12 | 78 | 6.84e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77862.t1 | AT3G42170 | 28.035 | 346 | 223 | 9 | 116 | 443 | 65 | 402 | 2.17e-34 | 136 |
| MS.gene77862.t1 | AT3G42170 | 28.035 | 346 | 223 | 9 | 116 | 443 | 43 | 380 | 2.99e-34 | 135 |
| MS.gene77862.t1 | AT1G18560 | 23.145 | 337 | 237 | 11 | 112 | 442 | 49 | 369 | 4.59e-14 | 74.7 |
Find 82 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAAGATAACTCAAATTT+TGG | 0.133332 | 3.4:+25605506 | None:intergenic |
| CTAGATTCTCAATTCCTTCT+AGG | 0.160511 | 3.4:-25605645 | MS.gene77862:CDS |
| GGTCCTGATGCTGGAGATTC+AGG | 0.280201 | 3.4:-25606054 | MS.gene77862:CDS |
| CACATTTCATTGATCAAGAT+TGG | 0.297341 | 3.4:-25605477 | MS.gene77862:CDS |
| TGCAACACTGCCACCGAGTT+TGG | 0.303498 | 3.4:-25606166 | MS.gene77862:CDS |
| ATCCTAGAGCTACGTGTAAT+TGG | 0.309322 | 3.4:-25605963 | MS.gene77862:CDS |
| ATAGGTTTAGAACTTGCATT+AGG | 0.320588 | 3.4:-25605117 | MS.gene77862:CDS |
| GAAGGATCAAGAGACTCTTT+TGG | 0.324518 | 3.4:+25605856 | None:intergenic |
| ACTCCCCTATGATCCATAAT+TGG | 0.343800 | 3.4:+25605424 | None:intergenic |
| GAGCAAATGGATTCTTAGAT+TGG | 0.344996 | 3.4:+25605897 | None:intergenic |
| TTTGTCCAATTATGGATCAT+AGG | 0.354325 | 3.4:-25605429 | MS.gene77862:CDS |
| CACGTAGCTCTAGGATTAGT+TGG | 0.358166 | 3.4:+25605970 | None:intergenic |
| AAGCTTGTAGAACTAGATCT+TGG | 0.362157 | 3.4:-25606023 | MS.gene77862:CDS |
| TTCAGCTGCTAGAGATTGTT+GGG | 0.380500 | 3.4:-25605620 | MS.gene77862:CDS |
| AGGTTCAGCAGTAGAGTTCA+TGG | 0.387049 | 3.4:+25606197 | None:intergenic |
| GATAAGAAGAAAAGGAAAGT+TGG | 0.392292 | 3.4:-25606105 | MS.gene77862:CDS |
| GTAGAACTAGATCTTGGGTT+TGG | 0.394767 | 3.4:-25606017 | MS.gene77862:CDS |
| GCCGATTCCGTCACCCTCTT+CGG | 0.407057 | 3.4:-25606978 | MS.gene77862:CDS |
| GGTGGTACCGGTATCGGAGG+TGG | 0.409498 | 3.4:+25607004 | None:intergenic |
| TTCAACAAATGCAACTATCA+AGG | 0.437789 | 3.4:-25606076 | MS.gene77862:CDS |
| TGGAATTCACATCCACTAAA+GGG | 0.442210 | 3.4:-25605274 | MS.gene77862:CDS |
| GGTGACGGAATCGGCGGCGG+TGG | 0.442732 | 3.4:+25606986 | None:intergenic |
| TTGTCCAATTATGGATCATA+GGG | 0.444379 | 3.4:-25605428 | MS.gene77862:CDS |
| AGAGTTAGTGTTTGTTGAGA+AGG | 0.444462 | 3.4:+25605838 | None:intergenic |
| ACTATCAAGGGTCCTGATGC+TGG | 0.445577 | 3.4:-25606063 | MS.gene77862:CDS |
| TTTCAGCTGCTAGAGATTGT+TGG | 0.447071 | 3.4:-25605621 | MS.gene77862:CDS |
| CTAGAAGGAATTGAGAATCT+AGG | 0.447489 | 3.4:+25605646 | None:intergenic |
| TACATGCTTCAGTATCGAAA+TGG | 0.447494 | 3.4:+25605761 | None:intergenic |
| GGAATCGGCGGCGGTGGTAC+CGG | 0.451230 | 3.4:+25606992 | None:intergenic |
| CTCTTTCTCTCTGAATCATC+AGG | 0.452798 | 3.4:-25606921 | MS.gene77862:intron |
| AATCTCCCGGTCGCATGGAT+AGG | 0.453439 | 3.4:-25605135 | MS.gene77862:CDS |
| AGCTTGTAGAACTAGATCTT+GGG | 0.455422 | 3.4:-25606022 | MS.gene77862:CDS |
| TTAGTCTCACCACTGATTGT+TGG | 0.455686 | 3.4:-25605537 | MS.gene77862:CDS |
| CTAGCAGCTGAAATCCTAGA+AGG | 0.456104 | 3.4:+25605631 | None:intergenic |
| ACTAATGAGAGTAGAATAGC+TGG | 0.463179 | 3.4:-25606231 | MS.gene77862:CDS |
| GCCGAAGAGGGTGACGGAAT+CGG | 0.463494 | 3.4:+25606977 | None:intergenic |
| GTAAGTAATAGCAACATCAT+TGG | 0.463572 | 3.4:+25605318 | None:intergenic |
| AAAGAAGATGGGAATGGAAC+TGG | 0.465979 | 3.4:-25605802 | MS.gene77862:CDS |
| GGCGGCGGTGGTACCGGTAT+CGG | 0.470840 | 3.4:+25606998 | None:intergenic |
| GATCATAGGGGAGTAACAAT+TGG | 0.478707 | 3.4:-25605415 | MS.gene77862:CDS |
| GTACCTGAATCTCCAGCATC+AGG | 0.482272 | 3.4:+25606051 | None:intergenic |
| GTTCCAATGATAAGAAGAAA+AGG | 0.486743 | 3.4:-25606113 | MS.gene77862:CDS |
| GCGTCGCCCACCTCCGATAC+CGG | 0.487533 | 3.4:-25607011 | MS.gene77862:CDS |
| TCGTCAATCTCCCGGTCGCA+TGG | 0.499716 | 3.4:-25605140 | MS.gene77862:CDS |
| CTGGAATTCACATCCACTAA+AGG | 0.500214 | 3.4:-25605275 | MS.gene77862:CDS |
| CAGAGAGAAAGAGTCGGATC+CGG | 0.509168 | 3.4:+25606931 | None:intergenic |
| GTTGCTATTACTTACTTGAA+AGG | 0.509736 | 3.4:-25605310 | MS.gene77862:CDS |
| TAGGTTTAGAACTTGCATTA+GGG | 0.511776 | 3.4:-25605116 | MS.gene77862:CDS |
| GTGGTACCGGTATCGGAGGT+GGG | 0.511799 | 3.4:+25607005 | None:intergenic |
| GAGGGTGACGGAATCGGCGG+CGG | 0.514193 | 3.4:+25606983 | None:intergenic |
| ATGAACTCTACTGCTGAACC+TGG | 0.520819 | 3.4:-25606195 | MS.gene77862:CDS |
| GGCAGTGTTGCAAGTAGTCC+AGG | 0.524119 | 3.4:+25606177 | None:intergenic |
| GGATCCGGTGAGAGGATTGT+TGG | 0.533260 | 3.4:+25606946 | None:intergenic |
| TCTAAACCTATCCATGCGAC+CGG | 0.534074 | 3.4:+25605129 | None:intergenic |
| AACACTGCCACCGAGTTTGG+AGG | 0.543171 | 3.4:-25606163 | MS.gene77862:CDS |
| ACTAGCATTATCGACTGTAA+TGG | 0.544736 | 3.4:+25605342 | None:intergenic |
| ACACTGCCACCGAGTTTGGA+GGG | 0.556428 | 3.4:-25606162 | MS.gene77862:CDS |
| AGATATGTTCGTCAATCTCC+CGG | 0.560668 | 3.4:-25605148 | MS.gene77862:CDS |
| TCAACAAATGCAACTATCAA+GGG | 0.568353 | 3.4:-25606075 | MS.gene77862:CDS |
| AAAGAGTCGGATCCGGTGAG+AGG | 0.572184 | 3.4:+25606938 | None:intergenic |
| CACCAATTACACGTAGCTCT+AGG | 0.580322 | 3.4:+25605961 | None:intergenic |
| AGAAAAGTGTACTGTGCAGT+TGG | 0.581054 | 3.4:-25605080 | MS.gene77862:CDS |
| ATAGGGGAGTAACAATTGGT+AGG | 0.597423 | 3.4:-25605411 | MS.gene77862:CDS |
| CACTGCCACCGAGTTTGGAG+GGG | 0.599407 | 3.4:-25606161 | MS.gene77862:CDS |
| CTAAACCTATCCATGCGACC+GGG | 0.603499 | 3.4:+25605130 | None:intergenic |
| ATCACCAACAATCCTCTCAC+CGG | 0.605746 | 3.4:-25606950 | MS.gene77862:CDS |
| GGCGGTGGTACCGGTATCGG+AGG | 0.608910 | 3.4:+25607001 | None:intergenic |
| GGAATTCACATCCACTAAAG+GGG | 0.608914 | 3.4:-25605273 | MS.gene77862:CDS |
| AATGATGTGAACGTTGGTGA+AGG | 0.617934 | 3.4:-25606135 | MS.gene77862:CDS |
| ATTTCGATACTGAAGCATGT+AGG | 0.629372 | 3.4:-25605759 | MS.gene77862:CDS |
| GACAGAAGTCCAACAATCAG+TGG | 0.630331 | 3.4:+25605528 | None:intergenic |
| ATACTTGCCGAAGAGGGTGA+CGG | 0.630686 | 3.4:+25606971 | None:intergenic |
| GTTGGTGATACTTGCCGAAG+AGG | 0.646119 | 3.4:+25606964 | None:intergenic |
| TTGGTGATACTTGCCGAAGA+GGG | 0.648550 | 3.4:+25606965 | None:intergenic |
| GAAGAGGGTGACGGAATCGG+CGG | 0.650316 | 3.4:+25606980 | None:intergenic |
| CTAATGAGAGTAGAATAGCT+GGG | 0.652385 | 3.4:-25606230 | MS.gene77862:CDS |
| ATGATTCAGAGAGAAAGAGT+CGG | 0.658039 | 3.4:+25606925 | None:intergenic |
| TGCAGTTGGATGTCTCAACT+AGG | 0.666540 | 3.4:-25605066 | MS.gene77862:CDS |
| TGTCCAATTATGGATCATAG+GGG | 0.671670 | 3.4:-25605427 | MS.gene77862:CDS |
| GAATTCACATCCACTAAAGG+GGG | 0.671735 | 3.4:-25605272 | MS.gene77862:CDS |
| AGCTACGTGTAATTGGTGTG+CGG | 0.672582 | 3.4:-25605956 | MS.gene77862:CDS |
| AGTTGGATGTCTCAACTAGG+TGG | 0.748279 | 3.4:-25605063 | MS.gene77862:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAGTTAAAAAGTATTTTT+AGG | - | chr3.4:25606488-25606507 | MS.gene77862:intron | 10.0% |
| !!! | TTTTGTATAAAAAAAATGTT+TGG | - | chr3.4:25605694-25605713 | MS.gene77862:CDS | 10.0% |
| !! | TCAAAAAGAATATATTTGAA+AGG | - | chr3.4:25605428-25605447 | MS.gene77862:CDS | 15.0% |
| !!! | ATTATTTTTTAATTCGTATG+TGG | - | chr3.4:25605784-25605803 | MS.gene77862:CDS | 15.0% |
| !!! | CTTATATTTTTTGCATTATA+AGG | - | chr3.4:25605338-25605357 | MS.gene77862:CDS | 15.0% |
| !!! | TTCAAATATATTCTTTTTGA+TGG | + | chr3.4:25605428-25605447 | None:intergenic | 15.0% |
| !! | AAAGAATATATTTGAAAGGA+TGG | - | chr3.4:25605432-25605451 | MS.gene77862:CDS | 20.0% |
| !! | AACAATTGAAAAAAGAAGAT+GGG | - | chr3.4:25606251-25606270 | MS.gene77862:intron | 20.0% |
| !! | AAGAATATATTTGAAAGGAT+GGG | - | chr3.4:25605433-25605452 | MS.gene77862:CDS | 20.0% |
| !! | TAGATTAGAATAAATTAGCT+TGG | - | chr3.4:25605505-25605524 | MS.gene77862:CDS | 20.0% |
| !! | TAGGAAAATTGAAAAATGTT+TGG | - | chr3.4:25606672-25606691 | MS.gene77862:intron | 20.0% |
| !! | TTCAAACATACATTCTTATA+TGG | + | chr3.4:25605747-25605766 | None:intergenic | 20.0% |
| !!! | AGATTAGAATAAATTAGCTT+GGG | - | chr3.4:25605506-25605525 | MS.gene77862:CDS | 20.0% |
| !!! | AGTTAAAAAGTATTTTTAGG+AGG | - | chr3.4:25606491-25606510 | MS.gene77862:intron | 20.0% |
| !!! | ATTTTTTGCATTATAAGGAA+AGG | - | chr3.4:25605343-25605362 | MS.gene77862:CDS | 20.0% |
| !!! | GTTAAAAAGTATTTTTAGGA+GGG | - | chr3.4:25606492-25606511 | MS.gene77862:intron | 20.0% |
| !!! | TCTTAATTTTTGTCCAATTA+TGG | - | chr3.4:25606627-25606646 | MS.gene77862:intron | 20.0% |
| !!! | TTAAAAAGTATTTTTAGGAG+GGG | - | chr3.4:25606493-25606512 | MS.gene77862:intron | 20.0% |
| !!! | TTTTTTATCACTTACTTCTT+TGG | - | chr3.4:25605661-25605680 | MS.gene77862:CDS | 20.0% |
| ! | ATCAGATAGATTAGAAACAA+TGG | - | chr3.4:25605227-25605246 | MS.gene77862:CDS | 25.0% |
| ! | CAACAATTGAAAAAAGAAGA+TGG | - | chr3.4:25606250-25606269 | MS.gene77862:intron | 25.0% |
| ! | GAAAATTGAAAAATGTTTGG+AGG | - | chr3.4:25606675-25606694 | MS.gene77862:intron | 25.0% |
| ! | TACTTACTTGAAAGGAAAAA+TGG | - | chr3.4:25606762-25606781 | MS.gene77862:intron | 25.0% |
| ! | TCAGATAGATTAGAAACAAT+GGG | - | chr3.4:25605228-25605247 | MS.gene77862:CDS | 25.0% |
| ! | TTTCATTCAACTATTGATCA+TGG | + | chr3.4:25605578-25605597 | None:intergenic | 25.0% |
| !! | GACAAAGATAACTCAAATTT+TGG | + | chr3.4:25606561-25606580 | None:intergenic | 25.0% |
| !! | TAATTTTGCTAATTGAAGAC+TGG | + | chr3.4:25606885-25606904 | None:intergenic | 25.0% |
| !! | TTTCCTTTTCTTCTTATCAT+TGG | + | chr3.4:25605957-25605976 | None:intergenic | 25.0% |
| !!! | TTACCTTTTAAGTTTGTTGA+GGG | - | chr3.4:25606361-25606380 | MS.gene77862:intron | 25.0% |
| !!! | TTGAATTTTGTTGTCAAAGA+CGG | - | chr3.4:25606847-25606866 | MS.gene77862:intron | 25.0% |
| CACATTTCATTGATCAAGAT+TGG | - | chr3.4:25606587-25606606 | MS.gene77862:intron | 30.0% | |
| GATAAGAAGAAAAGGAAAGT+TGG | - | chr3.4:25605959-25605978 | MS.gene77862:CDS | 30.0% | |
| GTAAGTAATAGCAACATCAT+TGG | + | chr3.4:25606749-25606768 | None:intergenic | 30.0% | |
| GTTCCAATGATAAGAAGAAA+AGG | - | chr3.4:25605951-25605970 | MS.gene77862:CDS | 30.0% | |
| TCAACAAATGCAACTATCAA+GGG | - | chr3.4:25605989-25606008 | MS.gene77862:CDS | 30.0% | |
| TGTGAAAATCCATGATCAAA+GGG | - | chr3.4:25605266-25605285 | MS.gene77862:CDS | 30.0% | |
| TTACTTGAAAGGAAAAATGG+AGG | - | chr3.4:25606765-25606784 | MS.gene77862:intron | 30.0% | |
| TTCAACAAATGCAACTATCA+AGG | - | chr3.4:25605988-25606007 | MS.gene77862:CDS | 30.0% | |
| TTGAAAAAAGAAGATGGGAA+TGG | - | chr3.4:25606256-25606275 | MS.gene77862:intron | 30.0% | |
| TTGTCCAATTATGGATCATA+GGG | - | chr3.4:25606636-25606655 | MS.gene77862:intron | 30.0% | |
| TTGTGAAAATCCATGATCAA+AGG | - | chr3.4:25605265-25605284 | MS.gene77862:CDS | 30.0% | |
| TTTGTCCAATTATGGATCAT+AGG | - | chr3.4:25606635-25606654 | MS.gene77862:intron | 30.0% | |
| ! | ATAGGTTTAGAACTTGCATT+AGG | - | chr3.4:25606947-25606966 | MS.gene77862:CDS | 30.0% |
| ! | GTTGCTATTACTTACTTGAA+AGG | - | chr3.4:25606754-25606773 | MS.gene77862:intron | 30.0% |
| ! | TAGGTTTAGAACTTGCATTA+GGG | - | chr3.4:25606948-25606967 | MS.gene77862:CDS | 30.0% |
| !! | TTTTACATTGACTGAGCAAA+TGG | + | chr3.4:25606183-25606202 | None:intergenic | 30.0% |
| !!! | GTTACCTTTTAAGTTTGTTG+AGG | - | chr3.4:25606360-25606379 | MS.gene77862:intron | 30.0% |
| !!! | TACCTTTTAAGTTTGTTGAG+GGG | - | chr3.4:25606362-25606381 | MS.gene77862:intron | 30.0% |
| AAGCTTGTAGAACTAGATCT+TGG | - | chr3.4:25606041-25606060 | MS.gene77862:CDS | 35.0% | |
| ACTAATGAGAGTAGAATAGC+TGG | - | chr3.4:25605833-25605852 | MS.gene77862:CDS | 35.0% | |
| AGCTTGTAGAACTAGATCTT+GGG | - | chr3.4:25606042-25606061 | MS.gene77862:CDS | 35.0% | |
| ATGATTCAGAGAGAAAGAGT+CGG | + | chr3.4:25605142-25605161 | None:intergenic | 35.0% | |
| ATTTCGATACTGAAGCATGT+AGG | - | chr3.4:25606305-25606324 | MS.gene77862:intron | 35.0% | |
| CTAATGAGAGTAGAATAGCT+GGG | - | chr3.4:25605834-25605853 | MS.gene77862:CDS | 35.0% | |
| CTAGAAGGAATTGAGAATCT+AGG | + | chr3.4:25606421-25606440 | None:intergenic | 35.0% | |
| CTAGATTCTCAATTCCTTCT+AGG | - | chr3.4:25606419-25606438 | MS.gene77862:intron | 35.0% | |
| TGATTCAGCTATTGAAGAGA+AGG | + | chr3.4:25605211-25605230 | None:intergenic | 35.0% | |
| TGGAATTCACATCCACTAAA+GGG | - | chr3.4:25606790-25606809 | MS.gene77862:intron | 35.0% | |
| TGTCCAATTATGGATCATAG+GGG | - | chr3.4:25606637-25606656 | MS.gene77862:intron | 35.0% | |
| TTGAAAAATGTTTGGAGGAG+TGG | - | chr3.4:25606680-25606699 | MS.gene77862:intron | 35.0% | |
| ! | ACTAGCATTATCGACTGTAA+TGG | + | chr3.4:25606725-25606744 | None:intergenic | 35.0% |
| ! | AGAGTTAGTGTTTGTTGAGA+AGG | + | chr3.4:25606229-25606248 | None:intergenic | 35.0% |
| ! | GAGCAAATGGATTCTTAGAT+TGG | + | chr3.4:25606170-25606189 | None:intergenic | 35.0% |
| ! | TACATGCTTCAGTATCGAAA+TGG | + | chr3.4:25606306-25606325 | None:intergenic | 35.0% |
| !! | GCTGCTGATTCACATAAAAA+TGG | - | chr3.4:25606139-25606158 | MS.gene77862:CDS | 35.0% |
| !!! | ACCTTTTAAGTTTGTTGAGG+GGG | - | chr3.4:25606363-25606382 | MS.gene77862:intron | 35.0% |
| AAAGAAGATGGGAATGGAAC+TGG | - | chr3.4:25606262-25606281 | MS.gene77862:intron | 40.0% | |
| ACTCCCCTATGATCCATAAT+TGG | + | chr3.4:25606643-25606662 | None:intergenic | 40.0% | |
| AGATATGTTCGTCAATCTCC+CGG | - | chr3.4:25606916-25606935 | MS.gene77862:intron | 40.0% | |
| ATAGGGGAGTAACAATTGGT+AGG | - | chr3.4:25606653-25606672 | MS.gene77862:intron | 40.0% | |
| ATCCTAGAGCTACGTGTAAT+TGG | - | chr3.4:25606101-25606120 | MS.gene77862:CDS | 40.0% | |
| CTCTTTCTCTCTGAATCATC+AGG | - | chr3.4:25605143-25605162 | MS.gene77862:CDS | 40.0% | |
| CTGGAATTCACATCCACTAA+AGG | - | chr3.4:25606789-25606808 | MS.gene77862:intron | 40.0% | |
| GAATTCACATCCACTAAAGG+GGG | - | chr3.4:25606792-25606811 | MS.gene77862:intron | 40.0% | |
| GATCATAGGGGAGTAACAAT+TGG | - | chr3.4:25606649-25606668 | MS.gene77862:intron | 40.0% | |
| GGAATTCACATCCACTAAAG+GGG | - | chr3.4:25606791-25606810 | MS.gene77862:intron | 40.0% | |
| GGGAAAAATGATGTGAACGT+TGG | - | chr3.4:25605923-25605942 | MS.gene77862:CDS | 40.0% | |
| GGGCGCTATTCATGTAATTT+GGG | - | chr3.4:25605286-25605305 | MS.gene77862:CDS | 40.0% | |
| GTAGAACTAGATCTTGGGTT+TGG | - | chr3.4:25606047-25606066 | MS.gene77862:CDS | 40.0% | |
| TCCCCCTCAACAAACTTAAA+AGG | + | chr3.4:25606367-25606386 | None:intergenic | 40.0% | |
| TGAAAGGAAAAATGGAGGAC+TGG | - | chr3.4:25606770-25606789 | MS.gene77862:intron | 40.0% | |
| TGTAAGTATTCCCCCTTTAG+TGG | + | chr3.4:25606805-25606824 | None:intergenic | 40.0% | |
| TTCAGCTGCTAGAGATTGTT+GGG | - | chr3.4:25606444-25606463 | MS.gene77862:intron | 40.0% | |
| TTTCAGCTGCTAGAGATTGT+TGG | - | chr3.4:25606443-25606462 | MS.gene77862:intron | 40.0% | |
| ! | AATGATGTGAACGTTGGTGA+AGG | - | chr3.4:25605929-25605948 | MS.gene77862:CDS | 40.0% |
| ! | AGAAAAGTGTACTGTGCAGT+TGG | - | chr3.4:25606984-25607003 | MS.gene77862:CDS | 40.0% |
| ! | AGGGCGCTATTCATGTAATT+TGG | - | chr3.4:25605285-25605304 | MS.gene77862:CDS | 40.0% |
| ! | GAAGGATCAAGAGACTCTTT+TGG | + | chr3.4:25606211-25606230 | None:intergenic | 40.0% |
| ! | TTAGTCTCACCACTGATTGT+TGG | - | chr3.4:25606527-25606546 | MS.gene77862:intron | 40.0% |
| !! | GAAGGAAAAGAGTATCAGAG+TGG | + | chr3.4:25605193-25605212 | None:intergenic | 40.0% |
| !! | TCATTTTTCCCCTCCAAACT+CGG | + | chr3.4:25605914-25605933 | None:intergenic | 40.0% |
| !! | TTTAAGTTTGTTGAGGGGGA+GGG | - | chr3.4:25606367-25606386 | MS.gene77862:intron | 40.0% |
| !!! | TTTTAAGTTTGTTGAGGGGG+AGG | - | chr3.4:25606366-25606385 | MS.gene77862:intron | 40.0% |
| AGCTACGTGTAATTGGTGTG+CGG | - | chr3.4:25606108-25606127 | MS.gene77862:CDS | 45.0% | |
| AGCTAGCTACCAAACTCTAC+AGG | + | chr3.4:25605376-25605395 | None:intergenic | 45.0% | |
| AGGGGGAATACTTACATGTC+AGG | - | chr3.4:25606809-25606828 | MS.gene77862:intron | 45.0% | |
| AGGTTCAGCAGTAGAGTTCA+TGG | + | chr3.4:25605870-25605889 | None:intergenic | 45.0% | |
| AGTTGGATGTCTCAACTAGG+TGG | - | chr3.4:25607001-25607020 | MS.gene77862:CDS | 45.0% | |
| ATCACCAACAATCCTCTCAC+CGG | - | chr3.4:25605114-25605133 | MS.gene77862:CDS | 45.0% | |
| ATGAACTCTACTGCTGAACC+TGG | - | chr3.4:25605869-25605888 | MS.gene77862:CDS | 45.0% | |
| CACCAATTACACGTAGCTCT+AGG | + | chr3.4:25606106-25606125 | None:intergenic | 45.0% | |
| CTAGCAGCTGAAATCCTAGA+AGG | + | chr3.4:25606436-25606455 | None:intergenic | 45.0% | |
| GACAGAAGTCCAACAATCAG+TGG | + | chr3.4:25606539-25606558 | None:intergenic | 45.0% | |
| GCTAGCTACCAAACTCTACA+GGG | + | chr3.4:25605375-25605394 | None:intergenic | 45.0% | |
| TCTAAACCTATCCATGCGAC+CGG | + | chr3.4:25606938-25606957 | None:intergenic | 45.0% | |
| TGAATAGCGCCCTTTGATCA+TGG | + | chr3.4:25605278-25605297 | None:intergenic | 45.0% | |
| TGCAGTTGGATGTCTCAACT+AGG | - | chr3.4:25606998-25607017 | MS.gene77862:CDS | 45.0% | |
| TTCGTATGTGGATGTTCTGC+AGG | - | chr3.4:25605796-25605815 | MS.gene77862:CDS | 45.0% | |
| ! | TTGGTGATACTTGCCGAAGA+GGG | + | chr3.4:25605102-25605121 | None:intergenic | 45.0% |
| !! | CACGTAGCTCTAGGATTAGT+TGG | + | chr3.4:25606097-25606116 | None:intergenic | 45.0% |
| !! | TTAAGTTTGTTGAGGGGGAG+GGG | - | chr3.4:25606368-25606387 | MS.gene77862:intron | 45.0% |
| ACTATCAAGGGTCCTGATGC+TGG | - | chr3.4:25606001-25606020 | MS.gene77862:CDS | 50.0% | |
| ATACTTGCCGAAGAGGGTGA+CGG | + | chr3.4:25605096-25605115 | None:intergenic | 50.0% | |
| CAGAGAGAAAGAGTCGGATC+CGG | + | chr3.4:25605136-25605155 | None:intergenic | 50.0% | |
| CTAAACCTATCCATGCGACC+GGG | + | chr3.4:25606937-25606956 | None:intergenic | 50.0% | |
| GTACCTGAATCTCCAGCATC+AGG | + | chr3.4:25606016-25606035 | None:intergenic | 50.0% | |
| ! | TTTTTCCCCTCCAAACTCGG+TGG | + | chr3.4:25605911-25605930 | None:intergenic | 50.0% |
| !! | GTTGGTGATACTTGCCGAAG+AGG | + | chr3.4:25605103-25605122 | None:intergenic | 50.0% |
| AAAGAGTCGGATCCGGTGAG+AGG | + | chr3.4:25605129-25605148 | None:intergenic | 55.0% | |
| AACACTGCCACCGAGTTTGG+AGG | - | chr3.4:25605901-25605920 | MS.gene77862:CDS | 55.0% | |
| AATCTCCCGGTCGCATGGAT+AGG | - | chr3.4:25606929-25606948 | MS.gene77862:CDS | 55.0% | |
| ACACTGCCACCGAGTTTGGA+GGG | - | chr3.4:25605902-25605921 | MS.gene77862:CDS | 55.0% | |
| GGATCCGGTGAGAGGATTGT+TGG | + | chr3.4:25605121-25605140 | None:intergenic | 55.0% | |
| GGATGCGTCCCTGTAGAGTT+TGG | - | chr3.4:25605364-25605383 | MS.gene77862:CDS | 55.0% | |
| GGCAGTGTTGCAAGTAGTCC+AGG | + | chr3.4:25605890-25605909 | None:intergenic | 55.0% | |
| GGTCCTGATGCTGGAGATTC+AGG | - | chr3.4:25606010-25606029 | MS.gene77862:CDS | 55.0% | |
| TGCAACACTGCCACCGAGTT+TGG | - | chr3.4:25605898-25605917 | MS.gene77862:CDS | 55.0% | |
| CACTGCCACCGAGTTTGGAG+GGG | - | chr3.4:25605903-25605922 | MS.gene77862:CDS | 60.0% | |
| TCGTCAATCTCCCGGTCGCA+TGG | - | chr3.4:25606924-25606943 | MS.gene77862:CDS | 60.0% | |
| ! | GCCGATTCCGTCACCCTCTT+CGG | - | chr3.4:25605086-25605105 | MS.gene77862:CDS | 60.0% |
| !! | GAAGAGGGTGACGGAATCGG+CGG | + | chr3.4:25605087-25605106 | None:intergenic | 60.0% |
| !! | GCCGAAGAGGGTGACGGAAT+CGG | + | chr3.4:25605090-25605109 | None:intergenic | 60.0% |
| !! | GTGGTACCGGTATCGGAGGT+GGG | + | chr3.4:25605062-25605081 | None:intergenic | 60.0% |
| !! | GGTGGTACCGGTATCGGAGG+TGG | + | chr3.4:25605063-25605082 | None:intergenic | 65.0% |
| GCGTCGCCCACCTCCGATAC+CGG | - | chr3.4:25605053-25605072 | MS.gene77862:CDS | 70.0% | |
| GGAATCGGCGGCGGTGGTAC+CGG | + | chr3.4:25605075-25605094 | None:intergenic | 70.0% | |
| !! | GAGGGTGACGGAATCGGCGG+CGG | + | chr3.4:25605084-25605103 | None:intergenic | 70.0% |
| !! | GGCGGCGGTGGTACCGGTAT+CGG | + | chr3.4:25605069-25605088 | None:intergenic | 70.0% |
| !! | GGCGGTGGTACCGGTATCGG+AGG | + | chr3.4:25605066-25605085 | None:intergenic | 70.0% |
| !! | GGTGACGGAATCGGCGGCGG+TGG | + | chr3.4:25605081-25605100 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 25605051 | 25607035 | 25605051 | ID=MS.gene77862 |
| chr3.4 | mRNA | 25605051 | 25607035 | 25605051 | ID=MS.gene77862.t1;Parent=MS.gene77862 |
| chr3.4 | exon | 25606922 | 25607035 | 25606922 | ID=MS.gene77862.t1.exon1;Parent=MS.gene77862.t1 |
| chr3.4 | CDS | 25606922 | 25607035 | 25606922 | ID=cds.MS.gene77862.t1;Parent=MS.gene77862.t1 |
| chr3.4 | exon | 25605051 | 25606268 | 25605051 | ID=MS.gene77862.t1.exon2;Parent=MS.gene77862.t1 |
| chr3.4 | CDS | 25605051 | 25606268 | 25605051 | ID=cds.MS.gene77862.t1;Parent=MS.gene77862.t1 |
| Gene Sequence |
| Protein sequence |
