Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78076.t1 | XP_003590372.1 | 97.4 | 116 | 3 | 0 | 1 | 116 | 199 | 314 | 2.90E-56 | 227.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78076.t1 | Q3EAI1 | 50.0 | 122 | 47 | 2 | 1 | 108 | 290 | 411 | 2.3e-22 | 106.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78076.t1 | G7I997 | 97.4 | 116 | 3 | 0 | 1 | 116 | 199 | 314 | 2.1e-56 | 227.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053813 | MS.gene78076 | 0.801034 | 1.09E-48 | -1.69E-46 |
| MS.gene054010 | MS.gene78076 | 0.802211 | 6.25E-49 | -1.69E-46 |
| MS.gene054013 | MS.gene78076 | 0.800376 | 1.48E-48 | -1.69E-46 |
| MS.gene056191 | MS.gene78076 | 0.807251 | 5.54E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene78076 | 0.805265 | 1.45E-49 | -1.69E-46 |
| MS.gene058995 | MS.gene78076 | 0.806289 | 8.84E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene78076 | 0.804778 | 1.83E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78076.t1 | MTR_1g059270 | 97.414 | 116 | 3 | 0 | 1 | 116 | 199 | 314 | 1.21e-79 | 237 |
| MS.gene78076.t1 | MTR_7g092510 | 77.064 | 109 | 24 | 1 | 1 | 108 | 212 | 320 | 9.72e-55 | 174 |
| MS.gene78076.t1 | MTR_1g059270 | 97.872 | 47 | 1 | 0 | 1 | 47 | 199 | 245 | 7.37e-24 | 92.0 |
| MS.gene78076.t1 | MTR_4g070320 | 65.957 | 47 | 16 | 0 | 1 | 47 | 182 | 228 | 4.22e-14 | 67.0 |
| MS.gene78076.t1 | MTR_5g048860 | 61.702 | 47 | 18 | 0 | 1 | 47 | 404 | 450 | 7.66e-14 | 66.6 |
| MS.gene78076.t1 | MTR_3g116770 | 56.364 | 55 | 24 | 0 | 1 | 55 | 230 | 284 | 3.86e-13 | 64.3 |
| MS.gene78076.t1 | MTR_3g116770 | 56.364 | 55 | 24 | 0 | 1 | 55 | 230 | 284 | 3.89e-13 | 64.3 |
| MS.gene78076.t1 | MTR_8g065740 | 61.364 | 44 | 17 | 0 | 1 | 44 | 344 | 387 | 1.08e-12 | 63.2 |
| MS.gene78076.t1 | MTR_8g099880 | 52.055 | 73 | 26 | 4 | 1 | 70 | 184 | 250 | 2.50e-12 | 62.0 |
| MS.gene78076.t1 | MTR_7g053410 | 55.319 | 47 | 21 | 0 | 1 | 47 | 356 | 402 | 4.27e-12 | 61.6 |
| MS.gene78076.t1 | MTR_7g053410 | 55.319 | 47 | 21 | 0 | 1 | 47 | 356 | 402 | 4.91e-12 | 61.6 |
| MS.gene78076.t1 | MTR_1g017350 | 39.394 | 99 | 39 | 4 | 1 | 78 | 299 | 397 | 1.15e-11 | 60.5 |
| MS.gene78076.t1 | MTR_1g017350 | 39.394 | 99 | 39 | 4 | 1 | 78 | 299 | 397 | 1.17e-11 | 60.5 |
| MS.gene78076.t1 | MTR_1g017350 | 55.319 | 47 | 21 | 0 | 1 | 47 | 299 | 345 | 1.44e-11 | 60.1 |
| MS.gene78076.t1 | MTR_1g017350 | 55.319 | 47 | 21 | 0 | 1 | 47 | 299 | 345 | 1.45e-11 | 60.1 |
| MS.gene78076.t1 | MTR_3g498825 | 40.506 | 79 | 38 | 2 | 1 | 76 | 186 | 258 | 7.62e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78076.t1 | AT3G57800 | 56.731 | 104 | 37 | 2 | 1 | 96 | 243 | 346 | 1.62e-29 | 109 |
| MS.gene78076.t1 | AT3G57800 | 56.731 | 104 | 37 | 2 | 1 | 96 | 290 | 393 | 2.97e-29 | 109 |
| MS.gene78076.t1 | AT2G42300 | 60.825 | 97 | 24 | 3 | 1 | 97 | 224 | 306 | 5.84e-29 | 107 |
| MS.gene78076.t1 | AT2G42300 | 80.851 | 47 | 9 | 0 | 1 | 47 | 224 | 270 | 3.18e-19 | 80.5 |
| MS.gene78076.t1 | AT1G26260 | 47.143 | 70 | 36 | 1 | 1 | 70 | 240 | 308 | 4.40e-16 | 72.8 |
| MS.gene78076.t1 | AT1G26260 | 47.143 | 70 | 36 | 1 | 1 | 70 | 211 | 279 | 4.56e-16 | 72.4 |
| MS.gene78076.t1 | AT1G26260 | 47.143 | 70 | 36 | 1 | 1 | 70 | 262 | 330 | 6.25e-16 | 72.4 |
| MS.gene78076.t1 | AT1G26260 | 47.143 | 70 | 36 | 1 | 1 | 70 | 262 | 330 | 6.25e-16 | 72.4 |
| MS.gene78076.t1 | AT1G26260 | 47.143 | 70 | 36 | 1 | 1 | 70 | 262 | 330 | 6.25e-16 | 72.4 |
| MS.gene78076.t1 | AT1G26260 | 47.143 | 70 | 36 | 1 | 1 | 70 | 262 | 330 | 6.25e-16 | 72.4 |
| MS.gene78076.t1 | AT1G68920 | 49.333 | 75 | 32 | 2 | 1 | 70 | 342 | 415 | 1.22e-15 | 71.6 |
| MS.gene78076.t1 | AT1G68920 | 49.333 | 75 | 32 | 2 | 1 | 70 | 342 | 415 | 1.22e-15 | 71.6 |
| MS.gene78076.t1 | AT1G68920 | 49.333 | 75 | 32 | 2 | 1 | 70 | 342 | 415 | 1.22e-15 | 71.6 |
| MS.gene78076.t1 | AT1G68920 | 49.333 | 75 | 32 | 2 | 1 | 70 | 341 | 414 | 1.25e-15 | 71.6 |
| MS.gene78076.t1 | AT1G10120 | 56.140 | 57 | 25 | 0 | 1 | 57 | 245 | 301 | 8.62e-14 | 66.2 |
| MS.gene78076.t1 | AT1G10120 | 56.140 | 57 | 25 | 0 | 1 | 57 | 245 | 301 | 8.62e-14 | 66.2 |
| MS.gene78076.t1 | AT3G23690 | 50.000 | 70 | 31 | 1 | 1 | 66 | 230 | 299 | 3.70e-13 | 64.7 |
| MS.gene78076.t1 | AT3G07340 | 57.447 | 47 | 20 | 0 | 1 | 47 | 297 | 343 | 1.05e-12 | 63.5 |
| MS.gene78076.t1 | AT3G07340 | 57.447 | 47 | 20 | 0 | 1 | 47 | 297 | 343 | 1.16e-12 | 63.2 |
| MS.gene78076.t1 | AT4G34530 | 45.783 | 83 | 38 | 2 | 1 | 83 | 211 | 286 | 1.92e-12 | 62.4 |
| MS.gene78076.t1 | AT5G48560 | 54.000 | 50 | 22 | 1 | 1 | 49 | 340 | 389 | 4.15e-11 | 58.9 |
| MS.gene78076.t1 | AT5G48560 | 54.000 | 50 | 22 | 1 | 1 | 49 | 340 | 389 | 4.62e-11 | 58.5 |
Find 27 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCATTGTGTGGAATTTC+TGG | 0.119338 | 1.4:-41711626 | None:intergenic |
| TCAAGGTTGAAATCAATTAT+TGG | 0.224458 | 1.4:-41710781 | None:intergenic |
| TGCATTCCACCAACCACTTT+GGG | 0.284445 | 1.4:+41711682 | MS.gene78076:CDS |
| ATCAGGAACAGCATTGGTTT+TGG | 0.289474 | 1.4:+41710127 | MS.gene78076:CDS |
| CAAGGTTGAAATCAATTATT+GGG | 0.303962 | 1.4:-41710780 | None:intergenic |
| AAATTTCCTTTACAGATATC+AGG | 0.320893 | 1.4:+41710110 | None:intergenic |
| TATGACTCATCGGCAAATTC+AGG | 0.337138 | 1.4:+41711758 | MS.gene78076:CDS |
| TTTCTGGGGTCATGAAATTA+GGG | 0.358922 | 1.4:-41711721 | None:intergenic |
| TTTCAACCTTGACAGCATAT+TGG | 0.387389 | 1.4:+41710792 | MS.gene78076:CDS |
| ATGCATTCCACCAACCACTT+TGG | 0.397314 | 1.4:+41711681 | MS.gene78076:CDS |
| ACAGCGGGTGAAACTGCGTT+AGG | 0.478912 | 1.4:-41711599 | None:intergenic |
| TGCTGTCTGTTTCCATTGTG+TGG | 0.479482 | 1.4:-41711635 | None:intergenic |
| GGAATTTCTGGCCACACAGC+GGG | 0.527591 | 1.4:-41711614 | None:intergenic |
| ACAGATATCAGGAACAGCAT+TGG | 0.547071 | 1.4:+41710121 | None:intergenic |
| CTGCAGCCAATATGCTGTCA+AGG | 0.553773 | 1.4:-41710798 | None:intergenic |
| CAGCGGGTGAAACTGCGTTA+GGG | 0.566488 | 1.4:-41711598 | None:intergenic |
| CATTCTGTAGAGATTGCACA+TGG | 0.585158 | 1.4:-41710163 | None:intergenic |
| ACTTCTAAGTTATGACTCAT+CGG | 0.587921 | 1.4:+41711748 | MS.gene78076:CDS |
| ATTGTAGGGAATGTCTCTCA+TGG | 0.599541 | 1.4:+41711565 | MS.gene78076:intron |
| GACAGCAATTTCAGCAATCG+TGG | 0.599757 | 1.4:+41711651 | MS.gene78076:CDS |
| CATTCCACCAACCACTTTGG+GGG | 0.604196 | 1.4:+41711684 | MS.gene78076:CDS |
| GCATTCCACCAACCACTTTG+GGG | 0.608496 | 1.4:+41711683 | MS.gene78076:CDS |
| TGGAATTTCTGGCCACACAG+CGG | 0.611227 | 1.4:-41711615 | None:intergenic |
| GCAATCTCTACAGAATGAAG+TGG | 0.617385 | 1.4:+41710169 | MS.gene78076:CDS |
| ATCTCTACAGAATGAAGTGG+AGG | 0.623403 | 1.4:+41710172 | MS.gene78076:CDS |
| ACGCAGTTTCACCCGCTGTG+TGG | 0.639303 | 1.4:+41711603 | MS.gene78076:CDS |
| TGGCCAGAAATTCCACACAA+TGG | 0.658395 | 1.4:+41711623 | MS.gene78076:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTAGAAAATAATATAAA+TGG | + | chr1.4:41710595-41710614 | MS.gene78076:intron | 10.0% |
| !!! | AAATAATATCTGAAATTAAA+TGG | - | chr1.4:41711511-41711530 | None:intergenic | 10.0% |
| !! | CAAAATTGAAAATATTTCAT+AGG | + | chr1.4:41710644-41710663 | MS.gene78076:intron | 15.0% |
| !! | TAAAAATTAAAATGTCAAGA+AGG | - | chr1.4:41710957-41710976 | None:intergenic | 15.0% |
| !!! | ATATTATTTTCTAACTTTCA+AGG | - | chr1.4:41710592-41710611 | None:intergenic | 15.0% |
| !!! | TTAAGAACTTTAAAAATTAG+TGG | + | chr1.4:41710307-41710326 | MS.gene78076:intron | 15.0% |
| !!! | TTTTCTCTTTTATTGAAAAA+AGG | + | chr1.4:41710835-41710854 | MS.gene78076:intron | 15.0% |
| !! | AATAGTTAAACTCAATTAGA+TGG | - | chr1.4:41711113-41711132 | None:intergenic | 20.0% |
| !! | GGAATTTATTTATTTGTCTT+TGG | + | chr1.4:41710856-41710875 | MS.gene78076:intron | 20.0% |
| !! | TAGTCTAATAAAACTAAATC+AGG | - | chr1.4:41711025-41711044 | None:intergenic | 20.0% |
| !! | TTATTTATTTGTCTTTGGTT+GGG | + | chr1.4:41710861-41710880 | MS.gene78076:intron | 20.0% |
| !! | TTTATTTATTTGTCTTTGGT+TGG | + | chr1.4:41710860-41710879 | MS.gene78076:intron | 20.0% |
| !!! | AATGAATTTTTATTAGCAGA+AGG | - | chr1.4:41711540-41711559 | None:intergenic | 20.0% |
| !!! | GTAAATACTTTTTTTCTTGA+GGG | + | chr1.4:41711258-41711277 | MS.gene78076:intron | 20.0% |
| !!! | TCATCAAATTTGTTTTTACT+TGG | + | chr1.4:41711087-41711106 | MS.gene78076:intron | 20.0% |
| !!! | TGCAAATTTTTCTACAAAAA+TGG | + | chr1.4:41710477-41710496 | MS.gene78076:intron | 20.0% |
| !!! | TGTAAATACTTTTTTTCTTG+AGG | + | chr1.4:41711257-41711276 | MS.gene78076:intron | 20.0% |
| !!! | TTTTATATAACTGACATTCT+AGG | + | chr1.4:41710200-41710219 | MS.gene78076:intron | 20.0% |
| ! | AAAATTCATTGTGACATTGT+AGG | + | chr1.4:41711550-41711569 | MS.gene78076:intron | 25.0% |
| ! | AAATGATGAACATGAAAATG+GGG | + | chr1.4:41711157-41711176 | MS.gene78076:intron | 25.0% |
| ! | AAATTCATTGTGACATTGTA+GGG | + | chr1.4:41711551-41711570 | MS.gene78076:intron | 25.0% |
| ! | AGAATTTATAACCACTAGTT+AGG | - | chr1.4:41711360-41711379 | None:intergenic | 25.0% |
| ! | ATAATGTCACATAGAATAAC+AGG | - | chr1.4:41710453-41710472 | None:intergenic | 25.0% |
| ! | ATTTCATAGGATCTTTCTAT+TGG | + | chr1.4:41710657-41710676 | MS.gene78076:intron | 25.0% |
| ! | CAAGGTTGAAATCAATTATT+GGG | - | chr1.4:41710783-41710802 | None:intergenic | 25.0% |
| ! | GAAATGATGAACATGAAAAT+GGG | + | chr1.4:41711156-41711175 | MS.gene78076:intron | 25.0% |
| ! | TAATGTCACATAGAATAACA+GGG | - | chr1.4:41710452-41710471 | None:intergenic | 25.0% |
| ! | TCAAGGTTGAAATCAATTAT+TGG | - | chr1.4:41710784-41710803 | None:intergenic | 25.0% |
| ! | TGAAATGATGAACATGAAAA+TGG | + | chr1.4:41711155-41711174 | MS.gene78076:intron | 25.0% |
| ! | TTTGAAGGATCAGATAAATA+CGG | - | chr1.4:41710351-41710370 | None:intergenic | 25.0% |
| !! | AATGTAATAGAGTACTTAAC+AGG | + | chr1.4:41711285-41711304 | MS.gene78076:intron | 25.0% |
| !! | TATCTGAAATTAAATGGAGA+AGG | - | chr1.4:41711505-41711524 | None:intergenic | 25.0% |
| !!! | TTGTTACTTTTTAGTTACCA+AGG | + | chr1.4:41711396-41711415 | MS.gene78076:intron | 25.0% |
| !!! | TTTTTAGTTCGAATTTATCG+AGG | + | chr1.4:41710971-41710990 | MS.gene78076:intron | 25.0% |
| AAATGTGATTTCGATCTCAT+TGG | + | chr1.4:41710712-41710731 | MS.gene78076:intron | 30.0% | |
| ACTTCTAAGTTATGACTCAT+CGG | + | chr1.4:41711748-41711767 | MS.gene78076:CDS | 30.0% | |
| ATGAATAACTCTAACCAATG+TGG | - | chr1.4:41711071-41711090 | None:intergenic | 30.0% | |
| ATTCTTCTAAGTTTCCACAT+TGG | + | chr1.4:41711054-41711073 | MS.gene78076:intron | 30.0% | |
| CTGGTATATGGAATAGAAAA+GGG | + | chr1.4:41711426-41711445 | MS.gene78076:intron | 30.0% | |
| TTGAAGGATCAGATAAATAC+GGG | - | chr1.4:41710350-41710369 | None:intergenic | 30.0% | |
| ! | AACTTAGAAGTGAGTTTTCT+GGG | - | chr1.4:41711739-41711758 | None:intergenic | 30.0% |
| ! | GCAGATTTTATCAATGAAAC+TGG | + | chr1.4:41710747-41710766 | MS.gene78076:intron | 30.0% |
| ! | TAACTTAGAAGTGAGTTTTC+TGG | - | chr1.4:41711740-41711759 | None:intergenic | 30.0% |
| !! | CTTGGCTCTAAAAATATTTG+AGG | + | chr1.4:41710914-41710933 | MS.gene78076:intron | 30.0% |
| AAATTAGGCAATGTGACGAT+AGG | - | chr1.4:41710511-41710530 | None:intergenic | 35.0% | |
| AGTTCTTAAGCACTATCTAC+AGG | - | chr1.4:41710296-41710315 | None:intergenic | 35.0% | |
| GCTGGTATATGGAATAGAAA+AGG | + | chr1.4:41711425-41711444 | MS.gene78076:intron | 35.0% | |
| TATCGTCACATTGCCTAATT+TGG | + | chr1.4:41710510-41710529 | MS.gene78076:intron | 35.0% | |
| TGAAGGATCAGATAAATACG+GGG | - | chr1.4:41710349-41710368 | None:intergenic | 35.0% | |
| TTAAATGGAGAAGGCTGAAT+TGG | - | chr1.4:41711496-41711515 | None:intergenic | 35.0% | |
| TTCTAGACTTCTGCATTGTT+TGG | + | chr1.4:41710556-41710575 | MS.gene78076:intron | 35.0% | |
| TTTCAACCTTGACAGCATAT+TGG | + | chr1.4:41710792-41710811 | MS.gene78076:CDS | 35.0% | |
| TTTCCATTGTGTGGAATTTC+TGG | - | chr1.4:41711629-41711648 | None:intergenic | 35.0% | |
| TTTCTATTGGAACACATTGC+AGG | + | chr1.4:41710670-41710689 | MS.gene78076:intron | 35.0% | |
| ! | ACTTAGAAGTGAGTTTTCTG+GGG | - | chr1.4:41711738-41711757 | None:intergenic | 35.0% |
| ! | ATGCGATGTGTATGATTTTG+TGG | + | chr1.4:41711456-41711475 | MS.gene78076:intron | 35.0% |
| ! | ATGTTCCTAAGCACTTTTGA+AGG | - | chr1.4:41710366-41710385 | None:intergenic | 35.0% |
| ! | CTGAACTACATGTACTTTTC+TGG | + | chr1.4:41710891-41710910 | MS.gene78076:intron | 35.0% |
| !! | TTTCTGGGGTCATGAAATTA+GGG | - | chr1.4:41711724-41711743 | None:intergenic | 35.0% |
| !!! | ACTTTTTAGTTACCAAGGTC+TGG | + | chr1.4:41711401-41711420 | MS.gene78076:intron | 35.0% |
| !!! | CTTTTTAGTTACCAAGGTCT+GGG | + | chr1.4:41711402-41711421 | MS.gene78076:intron | 35.0% |
| !!! | TTTTCTGGGGTCATGAAATT+AGG | - | chr1.4:41711725-41711744 | None:intergenic | 35.0% |
| !!! | TTTTTAGTTACCAAGGTCTG+GGG | + | chr1.4:41711403-41711422 | MS.gene78076:intron | 35.0% |
| ATCTCTACAGAATGAAGTGG+AGG | + | chr1.4:41710172-41710191 | MS.gene78076:CDS | 40.0% | |
| ATTGTAGGGAATGTCTCTCA+TGG | + | chr1.4:41711565-41711584 | MS.gene78076:intron | 40.0% | |
| CAGATAAATACGGGGAAGAA+AGG | - | chr1.4:41710341-41710360 | None:intergenic | 40.0% | |
| CATTCTGTAGAGATTGCACA+TGG | - | chr1.4:41710166-41710185 | None:intergenic | 40.0% | |
| CTACAGAGTGGAATGAATGA+CGG | - | chr1.4:41711209-41711228 | None:intergenic | 40.0% | |
| GAAGCATGAAATTTCAAGCC+TGG | - | chr1.4:41710539-41710558 | None:intergenic | 40.0% | |
| GCAATCTCTACAGAATGAAG+TGG | + | chr1.4:41710169-41710188 | MS.gene78076:CDS | 40.0% | |
| GCTTAGATCATCCTAACTAG+TGG | + | chr1.4:41711346-41711365 | MS.gene78076:intron | 40.0% | |
| TCATACGCACAACTGTAGAT+AGG | - | chr1.4:41710997-41711016 | None:intergenic | 40.0% | |
| !! | CTGATCCTTCAAAAGTGCTT+AGG | + | chr1.4:41710358-41710377 | MS.gene78076:intron | 40.0% |
| !!! | ATCAGGAACAGCATTGGTTT+TGG | + | chr1.4:41710127-41710146 | MS.gene78076:CDS | 40.0% |
| !!! | CTACATGTACTTTTCTGGCT+TGG | + | chr1.4:41710896-41710915 | MS.gene78076:intron | 40.0% |
| ATGCATTCCACCAACCACTT+TGG | + | chr1.4:41711681-41711700 | MS.gene78076:CDS | 45.0% | |
| CATTGCCTAATTTGGACTCC+AGG | + | chr1.4:41710518-41710537 | MS.gene78076:intron | 45.0% | |
| CGTCATTCATTCCACTCTGT+AGG | + | chr1.4:41711207-41711226 | MS.gene78076:intron | 45.0% | |
| GACAGCAATTTCAGCAATCG+TGG | + | chr1.4:41711651-41711670 | MS.gene78076:CDS | 45.0% | |
| TATCATGACAGCCTACAGAG+TGG | - | chr1.4:41711221-41711240 | None:intergenic | 45.0% | |
| TCAAGCCTGGAGTCCAAATT+AGG | - | chr1.4:41710526-41710545 | None:intergenic | 45.0% | |
| TGCATTCCACCAACCACTTT+GGG | + | chr1.4:41711682-41711701 | MS.gene78076:CDS | 45.0% | |
| TGCTGTCTGTTTCCATTGTG+TGG | - | chr1.4:41711638-41711657 | None:intergenic | 45.0% | |
| TGGCCAGAAATTCCACACAA+TGG | + | chr1.4:41711623-41711642 | MS.gene78076:CDS | 45.0% | |
| ! | TTTTCTTCTCTCCCCCAAAG+TGG | - | chr1.4:41711698-41711717 | None:intergenic | 45.0% |
| AATGGGGAGAGAGAGAGAGA+TGG | + | chr1.4:41711173-41711192 | MS.gene78076:intron | 50.0% | |
| CATTCCACCAACCACTTTGG+GGG | + | chr1.4:41711684-41711703 | MS.gene78076:CDS | 50.0% | |
| CTGCAGCCAATATGCTGTCA+AGG | - | chr1.4:41710801-41710820 | None:intergenic | 50.0% | |
| GCATTCCACCAACCACTTTG+GGG | + | chr1.4:41711683-41711702 | MS.gene78076:CDS | 50.0% | |
| !! | TGGAATTTCTGGCCACACAG+CGG | - | chr1.4:41711618-41711637 | None:intergenic | 50.0% |
| ACAGCGGGTGAAACTGCGTT+AGG | - | chr1.4:41711602-41711621 | None:intergenic | 55.0% | |
| CAGCGGGTGAAACTGCGTTA+GGG | - | chr1.4:41711601-41711620 | None:intergenic | 55.0% | |
| CATATACCAGCCCCAGACCT+TGG | - | chr1.4:41711416-41711435 | None:intergenic | 55.0% | |
| CTTCTCTCCCCCAAAGTGGT+TGG | - | chr1.4:41711694-41711713 | None:intergenic | 55.0% | |
| ! | CAAGGTCTGGGGCTGGTATA+TGG | + | chr1.4:41711414-41711433 | MS.gene78076:intron | 55.0% |
| ! | TAGTTACCAAGGTCTGGGGC+TGG | + | chr1.4:41711407-41711426 | MS.gene78076:intron | 55.0% |
| !! | GGAATTTCTGGCCACACAGC+GGG | - | chr1.4:41711617-41711636 | None:intergenic | 55.0% |
| ACGCAGTTTCACCCGCTGTG+TGG | + | chr1.4:41711603-41711622 | MS.gene78076:CDS | 60.0% | |
| CTCTCCCCCAAAGTGGTTGG+TGG | - | chr1.4:41711691-41711710 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 41710125 | 41711779 | 41710125 | ID=MS.gene78076 |
| chr1.4 | mRNA | 41710125 | 41711779 | 41710125 | ID=MS.gene78076.t1;Parent=MS.gene78076 |
| chr1.4 | exon | 41710125 | 41710193 | 41710125 | ID=MS.gene78076.t1.exon1;Parent=MS.gene78076.t1 |
| chr1.4 | CDS | 41710125 | 41710193 | 41710125 | ID=cds.MS.gene78076.t1;Parent=MS.gene78076.t1 |
| chr1.4 | exon | 41710751 | 41710822 | 41710751 | ID=MS.gene78076.t1.exon2;Parent=MS.gene78076.t1 |
| chr1.4 | CDS | 41710751 | 41710822 | 41710751 | ID=cds.MS.gene78076.t1;Parent=MS.gene78076.t1 |
| chr1.4 | exon | 41711572 | 41711779 | 41711572 | ID=MS.gene78076.t1.exon3;Parent=MS.gene78076.t1 |
| chr1.4 | CDS | 41711572 | 41711779 | 41711572 | ID=cds.MS.gene78076.t1;Parent=MS.gene78076.t1 |
| Gene Sequence |
| Protein sequence |
