AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058995


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058995.t1 MTR_1g068970 98.452 323 5 0 1 323 1 323 0.0 659
MS.gene058995.t1 MTR_7g099850 83.025 324 54 1 1 323 1 324 0.0 573
MS.gene058995.t1 MTR_1g068970 98.828 256 3 0 68 323 1 256 0.0 530
MS.gene058995.t1 MTR_1g100395 58.689 305 126 0 13 317 8 312 1.27e-129 372
MS.gene058995.t1 MTR_1g100305 58.033 305 128 0 13 317 8 312 2.67e-129 371
MS.gene058995.t1 MTR_1g100335 58.689 305 126 0 13 317 8 312 4.28e-128 369
MS.gene058995.t1 MTR_8g098415 57.097 310 133 0 10 319 5 314 4.37e-128 368
MS.gene058995.t1 MTR_1g100315 58.689 305 126 0 13 317 8 312 8.70e-128 367
MS.gene058995.t1 MTR_8g098415 56.818 308 133 0 10 317 5 312 1.18e-127 367
MS.gene058995.t1 MTR_6g053550 56.352 307 131 1 14 317 17 323 9.42e-120 347
MS.gene058995.t1 MTR_1g100335 60.000 250 100 0 13 262 8 257 1.14e-105 310
MS.gene058995.t1 MTR_1g100335 62.025 237 90 0 13 249 8 244 4.50e-104 305
MS.gene058995.t1 MTR_3g077410 48.137 322 163 2 1 318 1 322 2.48e-102 303
MS.gene058995.t1 MTR_8g098415 55.642 257 114 0 63 319 1 257 1.82e-100 296
MS.gene058995.t1 MTR_8g099995 49.846 325 153 5 1 318 1 322 7.75e-100 297
MS.gene058995.t1 MTR_4g105310 47.619 315 161 2 8 318 19 333 1.39e-97 292
MS.gene058995.t1 MTR_6g053600 54.962 262 115 1 15 273 4 265 1.59e-93 280
MS.gene058995.t1 MTR_8g098415 60.930 215 84 0 10 224 5 219 1.25e-90 270
MS.gene058995.t1 MTR_4g105310 49.593 246 120 2 8 249 19 264 5.64e-77 236
MS.gene058995.t1 MTR_2g079710 33.758 314 171 12 36 317 88 396 5.78e-27 109
MS.gene058995.t1 MTR_6g081020 31.641 256 159 7 34 280 61 309 9.90e-25 103
MS.gene058995.t1 MTR_6g041980 30.104 289 177 8 38 323 70 336 3.39e-23 98.6
MS.gene058995.t1 MTR_3g009190 26.667 300 196 8 37 318 65 358 1.62e-20 91.3
MS.gene058995.t1 MTR_3g009190 26.667 300 196 8 37 318 83 376 1.98e-20 91.3
MS.gene058995.t1 MTR_6g453040 26.000 300 198 9 37 318 43 336 9.78e-20 89.0
MS.gene058995.t1 MTR_3g091070 26.490 302 176 11 37 318 43 318 3.12e-18 84.3
MS.gene058995.t1 MTR_3g009190 26.756 299 195 9 38 318 65 357 4.03e-18 84.3
MS.gene058995.t1 MTR_8g022500 38.938 113 44 1 39 151 431 518 2.64e-15 76.6
MS.gene058995.t1 MTR_6g041980 32.374 139 90 1 37 175 69 203 7.60e-15 73.6
MS.gene058995.t1 MTR_1g100345 48.485 66 34 0 38 103 4 69 5.58e-14 67.0
MS.gene058995.t1 MTR_6g453040 27.500 200 130 5 37 225 65 260 4.85e-13 68.9
MS.gene058995.t1 MTR_7g076660 25.965 285 165 9 37 289 10 280 3.55e-12 66.2
MS.gene058995.t1 MTR_7g076660 26.316 285 164 9 37 289 9 279 4.45e-12 65.9
MS.gene058995.t1 MTR_6g453040 28.378 148 96 3 37 178 65 208 3.10e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058995.t1 AT5G02540 70.625 320 94 0 2 321 1 320 2.98e-168 471
MS.gene058995.t1 AT2G37540 68.438 320 101 0 2 321 1 320 8.93e-168 469
MS.gene058995.t1 AT2G37540 68.800 250 78 0 2 251 1 250 2.90e-129 369
MS.gene058995.t1 AT4G23430 56.230 313 136 1 10 321 5 317 1.25e-128 370
MS.gene058995.t1 AT4G23420 56.592 311 134 1 10 319 5 315 8.55e-128 368
MS.gene058995.t1 AT4G23420 56.592 311 134 1 10 319 5 315 8.55e-128 368
MS.gene058995.t1 AT4G23420 56.863 306 131 1 15 319 27 332 1.15e-126 365
MS.gene058995.t1 AT4G11410 56.579 304 132 0 13 316 8 311 4.32e-126 363
MS.gene058995.t1 AT4G23430 55.911 313 135 2 10 321 5 315 9.23e-126 363
MS.gene058995.t1 AT4G23430 53.355 313 135 2 10 321 5 307 1.32e-118 344
MS.gene058995.t1 AT4G23430 53.035 313 134 3 10 321 5 305 1.05e-115 337
MS.gene058995.t1 AT4G11410 58.103 253 105 1 13 265 8 259 7.13e-104 305
MS.gene058995.t1 AT4G23420 56.589 258 111 1 10 266 5 262 1.16e-103 305
MS.gene058995.t1 AT4G24050 50.789 317 153 2 10 323 10 326 1.76e-103 306
MS.gene058995.t1 AT4G23420 59.657 233 94 0 10 242 5 237 2.26e-101 298
MS.gene058995.t1 AT5G50130 48.137 322 163 3 1 318 1 322 3.01e-97 291
MS.gene058995.t1 AT1G64590 49.196 311 144 4 22 322 22 328 2.47e-86 263
MS.gene058995.t1 AT5G50130 47.331 281 147 1 39 318 8 288 3.04e-84 256
MS.gene058995.t1 AT5G50130 47.163 282 147 2 39 318 8 289 7.54e-83 253
MS.gene058995.t1 AT4G24050 50.562 267 127 3 10 273 10 274 1.58e-82 251
MS.gene058995.t1 AT5G50130 47.292 277 142 3 1 273 1 277 5.51e-81 249
MS.gene058995.t1 AT5G50130 49.035 259 129 2 1 256 1 259 4.33e-80 244
MS.gene058995.t1 AT5G50130 47.122 278 142 4 1 273 1 278 1.48e-79 245
MS.gene058995.t1 AT5G50130 48.846 260 129 3 1 256 1 260 1.33e-78 241
MS.gene058995.t1 AT5G50130 45.992 237 126 2 39 273 8 244 7.66e-67 211
MS.gene058995.t1 AT5G50130 45.798 238 126 3 39 273 8 245 2.72e-65 207
MS.gene058995.t1 AT1G03630 33.866 313 171 11 36 317 89 396 4.87e-30 118
MS.gene058995.t1 AT1G03630 34.177 316 166 12 36 317 91 398 5.01e-30 118
MS.gene058995.t1 AT5G54190 32.476 311 175 11 38 317 96 402 1.45e-29 117
MS.gene058995.t1 AT4G27440 32.635 334 186 12 19 317 69 398 1.81e-27 111
MS.gene058995.t1 AT4G27440 32.635 334 186 12 19 317 69 398 1.81e-27 111
MS.gene058995.t1 AT4G27760 29.934 304 184 7 34 317 57 351 6.34e-27 109
MS.gene058995.t1 AT4G09750 30.116 259 163 6 38 293 47 290 1.02e-26 107
MS.gene058995.t1 AT5G53090 28.904 301 191 5 34 317 56 350 7.48e-23 97.8
MS.gene058995.t1 AT5G54190 30.877 285 163 10 63 317 1 281 1.51e-21 92.8
MS.gene058995.t1 AT5G04070 26.471 306 197 9 37 323 61 357 1.08e-20 91.7
MS.gene058995.t1 AT5G15940 25.767 326 212 10 17 320 41 358 2.87e-20 90.5
MS.gene058995.t1 AT5G15940 25.767 326 212 10 17 320 41 358 2.87e-20 90.5
MS.gene058995.t1 AT5G53100 30.794 315 184 11 33 323 43 347 2.98e-20 90.5
MS.gene058995.t1 AT5G15940 25.767 326 212 10 17 320 40 357 3.19e-20 90.5
MS.gene058995.t1 AT5G15940 28.455 246 153 7 17 245 41 280 2.07e-18 84.7

Find 63 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAATATCAATGATCAAAT+TGG 0.192674 1.2:-51688840 MS.gene058995:CDS
CCAAGCTTGAAAGGGGTAAC+TGG 0.269808 1.2:-51687732 MS.gene058995:CDS
TTTGCGTCAAATGGACTCTT+AGG 0.333139 1.2:-51687669 MS.gene058995:CDS
TACTCTGACAAGAAGGCTTA+TGG 0.335582 1.2:-51688726 MS.gene058995:CDS
CCAGTTACCCCTTTCAAGCT+TGG 0.348372 1.2:+51687732 None:intergenic
ATGGCTGGACCAAGTGGATT+TGG 0.358790 1.2:-51690625 MS.gene058995:CDS
CAATTCCATCTTGTGTTAGT+TGG 0.380080 1.2:+51689135 None:intergenic
GTTTCATCTTCTCAAGTAGA+AGG 0.382996 1.2:+51688952 None:intergenic
GCAGGAGGAGCAAGTGGTAT+AGG 0.393987 1.2:-51689560 MS.gene058995:intron
GACTCTTAGGAAGAAAACTT+TGG 0.399753 1.2:-51687656 MS.gene058995:CDS
CAAGTAGAAGGTTTGTCAAA+AGG 0.414777 1.2:+51688964 None:intergenic
CTCTTCATCCAAGCTTGAAA+GGG 0.423486 1.2:-51687740 MS.gene058995:CDS
ACTCTTAGGAAGAAAACTTT+GGG 0.424071 1.2:-51687655 MS.gene058995:CDS
CGCAAAAGCCACTGGAATTG+AGG 0.424532 1.2:-51688925 MS.gene058995:CDS
CCAAGTGCATTTGCGTCAAA+TGG 0.424836 1.2:-51687678 MS.gene058995:CDS
TGAGCTTTCTCGTCGCTTGA+AGG 0.425790 1.2:-51688670 MS.gene058995:intron
TCGTTGGTCACAGGCATGGC+TGG 0.432678 1.2:-51690640 MS.gene058995:CDS
ATGTAGTATGTTGGCTAACT+TGG 0.439546 1.2:+51688698 None:intergenic
AAAGAAGAGTGTCTCATAAG+AGG 0.446043 1.2:+51688202 None:intergenic
CATTGTTGTTTATAGGAAGA+AGG 0.448332 1.2:-51688271 MS.gene058995:intron
AGAGGAGTCATTATTACTCC+TGG 0.451331 1.2:+51688220 None:intergenic
CCATTTGACGCAAATGCACT+TGG 0.458408 1.2:+51687678 None:intergenic
ATAATATCAATGATCAAATT+GGG 0.478493 1.2:-51688839 MS.gene058995:intron
AGGAGCAAGTGGTATAGGCT+TGG 0.478994 1.2:-51689555 MS.gene058995:CDS
CCATCTTGTGTTAGTTGGAA+GGG 0.480813 1.2:+51689140 None:intergenic
CTCATTTGCATGTAGTATGT+TGG 0.487271 1.2:+51688689 None:intergenic
GCTCTTCATCCAAGCTTGAA+AGG 0.487681 1.2:-51687741 MS.gene058995:CDS
TCCATCTTGTGTTAGTTGGA+AGG 0.500774 1.2:+51689139 None:intergenic
GCAAAAGCCACTGGAATTGA+GGG 0.501271 1.2:-51688924 MS.gene058995:CDS
CTTGGAGACAGCACGAGTCT+TGG 0.504599 1.2:-51689537 MS.gene058995:CDS
CAGTTTGCAACAAATCATCT+TGG 0.507918 1.2:-51689107 MS.gene058995:intron
TACTCCTGGGTGTACTGAGT+TGG 0.511760 1.2:+51688234 None:intergenic
CATCATCGCCGCAAGAAACA+TGG 0.516344 1.2:-51689495 MS.gene058995:CDS
TTTCAGTTACTCTGACAAGA+AGG 0.517957 1.2:-51688733 MS.gene058995:intron
TTTCTCGTTGGTCACAGGCA+TGG 0.523160 1.2:-51690644 MS.gene058995:CDS
CAAGCTTGAAAGGGGTAACT+GGG 0.526253 1.2:-51687731 MS.gene058995:CDS
CATACCTACACTTATGAAGA+AGG 0.526398 1.2:-51688873 MS.gene058995:CDS
AAACAAACCGCAAAAGCCAC+TGG 0.530342 1.2:-51688933 MS.gene058995:CDS
TTATGAAGAAGGCATTCGAT+TGG 0.541423 1.2:-51688862 MS.gene058995:CDS
CATCTTGTGTTAGTTGGAAG+GGG 0.544361 1.2:+51689141 None:intergenic
AATCTCACTGCAATTATCAC+AGG 0.550167 1.2:-51690556 MS.gene058995:intron
TGCAGACTCCATGTTTCTTG+CGG 0.551159 1.2:+51689487 None:intergenic
ACGAGTCTTGGCTCTTCGAA+AGG 0.553010 1.2:-51689525 MS.gene058995:CDS
CCCTTCCAACTAACACAAGA+TGG 0.556997 1.2:-51689140 MS.gene058995:CDS
AACTTGTTCAGCTGTTGTAG+AGG 0.569993 1.2:+51690600 None:intergenic
AAGCCACTGGAATTGAGGGC+AGG 0.573938 1.2:-51688920 MS.gene058995:CDS
GAGGAGTCATTATTACTCCT+GGG 0.575669 1.2:+51688221 None:intergenic
GGACAACAAGTCTGCTCGAG+TGG 0.588369 1.2:-51689438 MS.gene058995:CDS
GATCCTGCCCTCAATTCCAG+TGG 0.595826 1.2:+51688917 None:intergenic
ACAAATGCAGGAGGAGCAAG+TGG 0.598604 1.2:-51689566 MS.gene058995:intron
CATATGGAAGAATGTCCCAC+AGG 0.604912 1.2:-51688028 MS.gene058995:intron
ACATACATTAAGATGTTGAG+AGG 0.616840 1.2:+51689341 None:intergenic
AAGAAACATGGAGTCTGCAA+AGG 0.621142 1.2:-51689483 MS.gene058995:CDS
ACAGGCATGGCTGGACCAAG+TGG 0.621510 1.2:-51690631 MS.gene058995:CDS
AGCTAAACAAATTATACTAG+AGG 0.622644 1.2:-51689459 MS.gene058995:CDS
ACAGCTGAACAAGTTACTGA+AGG 0.633665 1.2:-51690592 MS.gene058995:CDS
TCTTCATCCAAGCTTGAAAG+GGG 0.636952 1.2:-51687739 MS.gene058995:CDS
TCTTCCAGAGTCAAAATGGT+GGG 0.639735 1.2:-51690670 None:intergenic
TGAGAGGAAGATCGAGAGCG+AGG 0.641279 1.2:+51689357 None:intergenic
AATGCCTTCTTCATAAGTGT+AGG 0.646281 1.2:+51688869 None:intergenic
GTAGAGGATCCAAATCCACT+TGG 0.663839 1.2:+51690616 None:intergenic
TAACAGACTTCACTGAACAA+AGG 0.665475 1.2:+51689399 None:intergenic
ACAGCCAACTCAGTACACCC+AGG 0.731735 1.2:-51688238 MS.gene058995:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAACAACAAATA+TGG + chr1.2:51690465-51690484 None:intergenic 10.0%
!!! TTGTTAATTTTAAAATTGTA+GGG - chr1.2:51690483-51690502 MS.gene058995:intron 10.0%
!!! TTTGTTAATTTTAAAATTGT+AGG - chr1.2:51690482-51690501 MS.gene058995:intron 10.0%
!! AAATAAAACATTGTAGAATA+AGG + chr1.2:51690284-51690303 None:intergenic 15.0%
!! ACTTAGACATATAATAAATA+AGG + chr1.2:51690169-51690188 None:intergenic 15.0%
!! ATAATATCAATGATCAAATT+GGG - chr1.2:51689430-51689449 MS.gene058995:CDS 15.0%
!! ATACTATCAAAATATACTAT+TGG - chr1.2:51689664-51689683 MS.gene058995:intron 15.0%
!! CATATCATCATTTATTTATT+TGG - chr1.2:51689215-51689234 MS.gene058995:intron 15.0%
!! CTAATGATTATAATTCTTAA+CGG - chr1.2:51688346-51688365 MS.gene058995:intron 15.0%
!! CTATTGTAATAAATAAATCT+TGG - chr1.2:51689712-51689731 MS.gene058995:intron 15.0%
!! GAAAAATTTATGGAAATATT+GGG + chr1.2:51689520-51689539 None:intergenic 15.0%
!! TGAAAAATTTATGGAAATAT+TGG + chr1.2:51689521-51689540 None:intergenic 15.0%
!!! TTAAGCAATGAATTTTTTTT+AGG + chr1.2:51688068-51688087 None:intergenic 15.0%
!! ACTTAATAACATACAGTAAT+TGG - chr1.2:51689067-51689086 MS.gene058995:intron 20.0%
!! AGAACAAATAAAACATGATT+TGG + chr1.2:51688616-51688635 None:intergenic 20.0%
!! ATTCTGTCAAAAATTTATGA+GGG - chr1.2:51688505-51688524 MS.gene058995:intron 20.0%
!! GAATTAAAATAAATACCTGT+GGG + chr1.2:51690259-51690278 None:intergenic 20.0%
!! GATAATATCAATGATCAAAT+TGG - chr1.2:51689429-51689448 MS.gene058995:CDS 20.0%
!! TATGTTATTAAGTAGCTATT+TGG + chr1.2:51689060-51689079 None:intergenic 20.0%
!! TATTCTGTCAAAAATTTATG+AGG - chr1.2:51688504-51688523 MS.gene058995:intron 20.0%
!! TCTTTATTATACTGTATAGT+TGG - chr1.2:51688434-51688453 MS.gene058995:intron 20.0%
!! TTAGTTATATATATGCACAA+AGG + chr1.2:51688171-51688190 None:intergenic 20.0%
!!! AATCAAGACATGTTTTATTA+TGG - chr1.2:51688190-51688209 MS.gene058995:intron 20.0%
!!! TAATTGGTTGTATTTTTTTC+AGG - chr1.2:51689276-51689295 MS.gene058995:intron 20.0%
!!! TCATAAGAAACTTTTTTTTG+AGG - chr1.2:51689933-51689952 MS.gene058995:intron 20.0%
!!! TGTTATTTAATGCACAAATT+TGG + chr1.2:51689962-51689981 None:intergenic 20.0%
!!! TTGGGAAATTTTTATTGTAA+AGG + chr1.2:51689502-51689521 None:intergenic 20.0%
!!! TTTTATTTGTTCTTGATTAG+TGG - chr1.2:51688623-51688642 MS.gene058995:intron 20.0%
!!! TTTTTGACATTGTTGTTTAT+AGG - chr1.2:51689991-51690010 MS.gene058995:intron 20.0%
! AAAACAAACAAAAGAGGAAA+AGG + chr1.2:51687902-51687921 None:intergenic 25.0%
! AAAAGTAAAGGAACAAAAGA+AGG + chr1.2:51687862-51687881 None:intergenic 25.0%
! AAATTGAATGAATTCCTCTT+AGG + chr1.2:51689811-51689830 None:intergenic 25.0%
! AGCTAAACAAATTATACTAG+AGG - chr1.2:51688810-51688829 MS.gene058995:intron 25.0%
! CAATTCTAATTCCATATTCT+TGG + chr1.2:51687811-51687830 None:intergenic 25.0%
! CAGAGTAACTGAAAAATTTA+TGG + chr1.2:51689530-51689549 None:intergenic 25.0%
! GGAATTAAAATAAATACCTG+TGG + chr1.2:51690260-51690279 None:intergenic 25.0%
! TAAAACATTGTAGAATAAGG+AGG + chr1.2:51690281-51690300 None:intergenic 25.0%
! TACTAATACTAAACAAATGC+AGG - chr1.2:51688691-51688710 MS.gene058995:CDS 25.0%
! TGACAGAATATATAGTTAGA+TGG + chr1.2:51688494-51688513 None:intergenic 25.0%
! TTCTGTCAAAAATTTATGAG+GGG - chr1.2:51688506-51688525 MS.gene058995:intron 25.0%
! TTGAATGTGTTTGAATATTG+AGG - chr1.2:51688585-51688604 MS.gene058995:intron 25.0%
!! AGATGTTCACATTTTACATA+TGG - chr1.2:51690225-51690244 MS.gene058995:intron 25.0%
!! ATCATTTTCATGTTCAAACA+AGG + chr1.2:51687771-51687790 None:intergenic 25.0%
!! TGGTCAAAGTATTATTTAGA+AGG - chr1.2:51688454-51688473 MS.gene058995:intron 25.0%
!!! TTGTTTTAACTCTTGTTGTA+CGG + chr1.2:51690122-51690141 None:intergenic 25.0%
!!! TTTCCTCTTTTGTTTGTTTT+GGG - chr1.2:51687902-51687921 MS.gene058995:intron 25.0%
!!! TTTTCCTCTTTTGTTTGTTT+TGG - chr1.2:51687901-51687920 MS.gene058995:intron 25.0%
!!! TTTTGTGTATTCTAGCTAAT+TGG - chr1.2:51689260-51689279 MS.gene058995:intron 25.0%
AAACATTAAGAAAGGAAGCA+GGG - chr1.2:51688142-51688161 MS.gene058995:intron 30.0%
ACAAGGTCAATTAAAAACGA+AGG + chr1.2:51687754-51687773 None:intergenic 30.0%
ACATACATTAAGATGTTGAG+AGG + chr1.2:51688931-51688950 None:intergenic 30.0%
ACTCTTAGGAAGAAAACTTT+GGG - chr1.2:51690614-51690633 MS.gene058995:CDS 30.0%
ATAGTGCCAAACATTAAGAA+AGG - chr1.2:51688134-51688153 MS.gene058995:intron 30.0%
TAAAACATCCACAGTGTATA+TGG + chr1.2:51687987-51688006 None:intergenic 30.0%
TAACATTTGCAAACTTTCAC+CGG + chr1.2:51690362-51690381 None:intergenic 30.0%
TAATACTAAACAAATGCAGG+AGG - chr1.2:51688694-51688713 MS.gene058995:CDS 30.0%
! CCTACTAGTATTATGTTTTG+GGG - chr1.2:51689772-51689791 MS.gene058995:intron 30.0%
! GCCTACTAGTATTATGTTTT+GGG - chr1.2:51689771-51689790 MS.gene058995:intron 30.0%
! TATTTCTGACACCAAGAATA+TGG - chr1.2:51687797-51687816 MS.gene058995:intron 30.0%
! TGCCTACTAGTATTATGTTT+TGG - chr1.2:51689770-51689789 MS.gene058995:intron 30.0%
! TTGATTTTCAGAAACAATGC+TGG - chr1.2:51689093-51689112 MS.gene058995:intron 30.0%
!! CATTGTTGTTTATAGGAAGA+AGG - chr1.2:51689998-51690017 MS.gene058995:intron 30.0%
!!! AGAGTTTTAAATAACCGTCA+TGG + chr1.2:51690385-51690404 None:intergenic 30.0%
!!! TTCCTCTTTTGTTTGTTTTG+GGG - chr1.2:51687903-51687922 MS.gene058995:intron 30.0%
AATCTCACTGCAATTATCAC+AGG - chr1.2:51687713-51687732 MS.gene058995:CDS 35.0%
AATGCCTTCTTCATAAGTGT+AGG + chr1.2:51689403-51689422 None:intergenic 35.0%
ATTGTAAAGGTAGTAGTCAC+TGG + chr1.2:51689489-51689508 None:intergenic 35.0%
CAAACAAAAGAGGAAAAGGA+AGG + chr1.2:51687898-51687917 None:intergenic 35.0%
CAAACATTAAGAAAGGAAGC+AGG - chr1.2:51688141-51688160 MS.gene058995:intron 35.0%
CAAGTAGAAGGTTTGTCAAA+AGG + chr1.2:51689308-51689327 None:intergenic 35.0%
CAATTCCATCTTGTGTTAGT+TGG + chr1.2:51689137-51689156 None:intergenic 35.0%
CAGTTTGCAACAAATCATCT+TGG - chr1.2:51689162-51689181 MS.gene058995:CDS 35.0%
CATACCTACACTTATGAAGA+AGG - chr1.2:51689396-51689415 MS.gene058995:CDS 35.0%
CCCCAAAACATAATACTAGT+AGG + chr1.2:51689775-51689794 None:intergenic 35.0%
CTCATTTGCATGTAGTATGT+TGG + chr1.2:51689583-51689602 None:intergenic 35.0%
CTGCTTCCTTTCTTAATGTT+TGG + chr1.2:51688143-51688162 None:intergenic 35.0%
GACTCTTAGGAAGAAAACTT+TGG - chr1.2:51690613-51690632 MS.gene058995:CDS 35.0%
GTTTCATCTTCTCAAGTAGA+AGG + chr1.2:51689320-51689339 None:intergenic 35.0%
GTTTGCAAATGTTACCATGA+CGG - chr1.2:51690368-51690387 MS.gene058995:intron 35.0%
TAACAGACTTCACTGAACAA+AGG + chr1.2:51688873-51688892 None:intergenic 35.0%
TACCCCAAAACAAACAAAAG+AGG + chr1.2:51687908-51687927 None:intergenic 35.0%
TCATCTTGGTATGTACTATG+TGG - chr1.2:51689176-51689195 MS.gene058995:intron 35.0%
TCATTTGTCCATATACACTG+TGG - chr1.2:51687976-51687995 MS.gene058995:intron 35.0%
TCGAGTTTGCGATACATATA+GGG + chr1.2:51688550-51688569 None:intergenic 35.0%
TTTCAGTTACTCTGACAAGA+AGG - chr1.2:51689536-51689555 MS.gene058995:CDS 35.0%
! ATGTAGTATGTTGGCTAACT+TGG + chr1.2:51689574-51689593 None:intergenic 35.0%
!! AAAGAAGAGTGTCTCATAAG+AGG + chr1.2:51690070-51690089 None:intergenic 35.0%
!! TTATGAAGAAGGCATTCGAT+TGG - chr1.2:51689407-51689426 MS.gene058995:CDS 35.0%
!! TTCTTACCACTGAGTTGATA+CGG - chr1.2:51688983-51689002 MS.gene058995:intron 35.0%
AAAGAGGAAAAGGAAGGACA+AGG + chr1.2:51687892-51687911 None:intergenic 40.0%
AAGAAACATGGAGTCTGCAA+AGG - chr1.2:51688786-51688805 MS.gene058995:intron 40.0%
ACAGCTGAACAAGTTACTGA+AGG - chr1.2:51687677-51687696 MS.gene058995:CDS 40.0%
AGAGGAGTCATTATTACTCC+TGG + chr1.2:51690052-51690071 None:intergenic 40.0%
CAAGGAGTGGCAAAAAGTAA+AGG + chr1.2:51687874-51687893 None:intergenic 40.0%
CATCTTGTGTTAGTTGGAAG+GGG + chr1.2:51689131-51689150 None:intergenic 40.0%
CCATCTTGTGTTAGTTGGAA+GGG + chr1.2:51689132-51689151 None:intergenic 40.0%
CCTCATACACTATTATGTCG+CGG + chr1.2:51690339-51690358 None:intergenic 40.0%
CGTGTAGTGTAGAGTTTAGA+TGG + chr1.2:51689840-51689859 None:intergenic 40.0%
CTCTTCATCCAAGCTTGAAA+GGG - chr1.2:51690529-51690548 MS.gene058995:intron 40.0%
GACATAATAGTGTATGAGGC+CGG - chr1.2:51690340-51690359 MS.gene058995:intron 40.0%
GAGGAGTCATTATTACTCCT+GGG + chr1.2:51690051-51690070 None:intergenic 40.0%
GCAATTATCACAGGTCTGAA+TGG - chr1.2:51687722-51687741 MS.gene058995:CDS 40.0%
GTCGAGTTTGCGATACATAT+AGG + chr1.2:51688551-51688570 None:intergenic 40.0%
TACTCTGACAAGAAGGCTTA+TGG - chr1.2:51689543-51689562 MS.gene058995:CDS 40.0%
TATGAGGGGTCAAATAAGCA+TGG - chr1.2:51688520-51688539 MS.gene058995:intron 40.0%
TCCATCTTGTGTTAGTTGGA+AGG + chr1.2:51689133-51689152 None:intergenic 40.0%
TCTTCATCCAAGCTTGAAAG+GGG - chr1.2:51690530-51690549 MS.gene058995:intron 40.0%
! AACTTGTTCAGCTGTTGTAG+AGG + chr1.2:51687672-51687691 None:intergenic 40.0%
! TTTGCGTCAAATGGACTCTT+AGG - chr1.2:51690600-51690619 MS.gene058995:CDS 40.0%
!!! AGTATTATGTTTTGGGGCCA+TGG - chr1.2:51689778-51689797 MS.gene058995:intron 40.0%
!!! GGTAACTGGGAAGTACTTTT+TGG - chr1.2:51690551-51690570 MS.gene058995:intron 40.0%
!!! GTATTATGTTTTGGGGCCAT+GGG - chr1.2:51689779-51689798 MS.gene058995:intron 40.0%
!!! GTTTGTTTTGGGGTATCTCT+CGG - chr1.2:51687913-51687932 MS.gene058995:intron 40.0%
AAACAAACCGCAAAAGCCAC+TGG - chr1.2:51689336-51689355 MS.gene058995:intron 45.0%
CAAGCTTGAAAGGGGTAACT+GGG - chr1.2:51690538-51690557 MS.gene058995:intron 45.0%
CATATGGAAGAATGTCCCAC+AGG - chr1.2:51690241-51690260 MS.gene058995:intron 45.0%
CCAAGTGCATTTGCGTCAAA+TGG - chr1.2:51690591-51690610 MS.gene058995:CDS 45.0%
CCATTTGACGCAAATGCACT+TGG + chr1.2:51690594-51690613 None:intergenic 45.0%
CCCTTCCAACTAACACAAGA+TGG - chr1.2:51689129-51689148 MS.gene058995:CDS 45.0%
CCGCGACATAATAGTGTATG+AGG - chr1.2:51690336-51690355 MS.gene058995:intron 45.0%
GCAAAAGCCACTGGAATTGA+GGG - chr1.2:51689345-51689364 MS.gene058995:intron 45.0%
GCTCTTCATCCAAGCTTGAA+AGG - chr1.2:51690528-51690547 MS.gene058995:intron 45.0%
GTAGAGGATCCAAATCCACT+TGG + chr1.2:51687656-51687675 None:intergenic 45.0%
TCTATGCCGTATCAACTCAG+TGG + chr1.2:51688992-51689011 None:intergenic 45.0%
TGCAGACTCCATGTTTCTTG+CGG + chr1.2:51688785-51688804 None:intergenic 45.0%
! CTCAATTCCAGTGGCTTTTG+CGG + chr1.2:51689346-51689365 None:intergenic 45.0%
! GGTATTTTCTCGTTGGTCAC+AGG - chr1.2:51687620-51687639 MS.gene058995:CDS 45.0%
!!! GTATTAAATATTTTTTTTTA+AGG - chr1.2:51688398-51688417 MS.gene058995:intron 5.0%
ACAAATGCAGGAGGAGCAAG+TGG - chr1.2:51688703-51688722 MS.gene058995:CDS 50.0%
ACACTATTATGTCGCGGCTC+AGG + chr1.2:51690333-51690352 None:intergenic 50.0%
AGGAGCAAGTGGTATAGGCT+TGG - chr1.2:51688714-51688733 MS.gene058995:CDS 50.0%
CATCATCGCCGCAAGAAACA+TGG - chr1.2:51688774-51688793 MS.gene058995:intron 50.0%
CCAAGCTTGAAAGGGGTAAC+TGG - chr1.2:51690537-51690556 MS.gene058995:intron 50.0%
CCAGTTACCCCTTTCAAGCT+TGG + chr1.2:51690540-51690559 None:intergenic 50.0%
CGCAAAAGCCACTGGAATTG+AGG - chr1.2:51689344-51689363 MS.gene058995:intron 50.0%
GGAAAAGGAAGGACAAGGAG+TGG + chr1.2:51687887-51687906 None:intergenic 50.0%
TACTCCTGGGTGTACTGAGT+TGG + chr1.2:51690038-51690057 None:intergenic 50.0%
TGAGCTTTCTCGTCGCTTGA+AGG - chr1.2:51689599-51689618 MS.gene058995:intron 50.0%
TTTCTCGTTGGTCACAGGCA+TGG - chr1.2:51687625-51687644 MS.gene058995:CDS 50.0%
! ACGAGTCTTGGCTCTTCGAA+AGG - chr1.2:51688744-51688763 MS.gene058995:intron 50.0%
! ATGGCTGGACCAAGTGGATT+TGG - chr1.2:51687644-51687663 MS.gene058995:CDS 50.0%
AAGCCACTGGAATTGAGGGC+AGG - chr1.2:51689349-51689368 MS.gene058995:CDS 55.0%
ACAGCCAACTCAGTACACCC+AGG - chr1.2:51690031-51690050 MS.gene058995:intron 55.0%
CTTGGAGACAGCACGAGTCT+TGG - chr1.2:51688732-51688751 MS.gene058995:intron 55.0%
GATCCTGCCCTCAATTCCAG+TGG + chr1.2:51689355-51689374 None:intergenic 55.0%
GCAGGAGGAGCAAGTGGTAT+AGG - chr1.2:51688709-51688728 MS.gene058995:CDS 55.0%
GGACAACAAGTCTGCTCGAG+TGG - chr1.2:51688831-51688850 MS.gene058995:intron 55.0%
TCCTCTTAGGTACGTGCCCA+TGG + chr1.2:51689798-51689817 None:intergenic 55.0%
TGAGAGGAAGATCGAGAGCG+AGG + chr1.2:51688915-51688934 None:intergenic 55.0%
ACAGGCATGGCTGGACCAAG+TGG - chr1.2:51687638-51687657 MS.gene058995:CDS 60.0%
GCCATGGGCACGTACCTAAG+AGG - chr1.2:51689794-51689813 MS.gene058995:intron 60.0%
TCGTTGGTCACAGGCATGGC+TGG - chr1.2:51687629-51687648 MS.gene058995:CDS 60.0%
TTATGTCGCGGCTCAGGTCG+CGG + chr1.2:51690327-51690346 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 51687614 51690677 51687614 ID=MS.gene058995
chr1.2 mRNA 51687614 51690677 51687614 ID=MS.gene058995.t1;Parent=MS.gene058995
chr1.2 exon 51690557 51690677 51690557 ID=MS.gene058995.t1.exon1;Parent=MS.gene058995.t1
chr1.2 CDS 51690557 51690677 51690557 ID=cds.MS.gene058995.t1;Parent=MS.gene058995.t1
chr1.2 exon 51689347 51689578 51689347 ID=MS.gene058995.t1.exon2;Parent=MS.gene058995.t1
chr1.2 CDS 51689347 51689578 51689347 ID=cds.MS.gene058995.t1;Parent=MS.gene058995.t1
chr1.2 exon 51689108 51689187 51689108 ID=MS.gene058995.t1.exon3;Parent=MS.gene058995.t1
chr1.2 CDS 51689108 51689187 51689108 ID=cds.MS.gene058995.t1;Parent=MS.gene058995.t1
chr1.2 exon 51688840 51688993 51688840 ID=MS.gene058995.t1.exon4;Parent=MS.gene058995.t1
chr1.2 CDS 51688840 51688993 51688840 ID=cds.MS.gene058995.t1;Parent=MS.gene058995.t1
chr1.2 exon 51688671 51688749 51688671 ID=MS.gene058995.t1.exon5;Parent=MS.gene058995.t1
chr1.2 CDS 51688671 51688749 51688671 ID=cds.MS.gene058995.t1;Parent=MS.gene058995.t1
chr1.2 exon 51688194 51688278 51688194 ID=MS.gene058995.t1.exon6;Parent=MS.gene058995.t1
chr1.2 CDS 51688194 51688278 51688194 ID=cds.MS.gene058995.t1;Parent=MS.gene058995.t1
chr1.2 exon 51688029 51688075 51688029 ID=MS.gene058995.t1.exon7;Parent=MS.gene058995.t1
chr1.2 CDS 51688029 51688075 51688029 ID=cds.MS.gene058995.t1;Parent=MS.gene058995.t1
chr1.2 exon 51687614 51687787 51687614 ID=MS.gene058995.t1.exon8;Parent=MS.gene058995.t1
chr1.2 CDS 51687614 51687787 51687614 ID=cds.MS.gene058995.t1;Parent=MS.gene058995.t1
Gene Sequence

>MS.gene058995

ATGGTGGGTATTTTCTCGTTGGTCACAGGCATGGCTGGACCAAGTGGATTTGGATCCTCTACAACAGCTGAACAAGTTACTGAAGGAATTGATGCAAGCAATCTCACTGCAATTATCACAGGTCTGAATGGAATATACCTTCGTTTTTAATTGACCTTGTTTGAACATGAAAATGATGTGAGATATTTCTGACACCAAGAATATGGAATTAGAATTGTCATGAGTTTAATACGTTTATGTTTGTGCCTTCTTTTGTTCCTTTACTTTTTGCCACTCCTTGTCCTTCCTTTTCCTCTTTTGTTTGTTTTGGGGTATCTCTCGGTTTCTGTTTCTGTTTTTGTGATTCTGAATATTTGACTTTTTCATTTGTCCATATACACTGTGGATGTTTTATTTCTACATGAATTTTTTTATTTTTTTTTATTTCTACATGAAATTCTTATAATACTTTCCTAAAAAAAATTCATTGCTTAATACTAAGAAGCGATAAATTATAATTAGCGATTGCACATATTTATGCATAGTGCCAAACATTAAGAAAGGAAGCAGGGTCTCCTTTGTGCATATATATAACTAAATCAAGACATGTTTTATTATGGTTCAATAATTTTTTTTTTTAATGAGTTCAATCTTAATATATCGTCATGTAAAAAGTTTTATAGTGTCAACAAATTACATCTATATCTATGACTTTAGAAGTGATTATAATTAAAATTCAATATTTTGTATGTTCTAATGATTATAATTCTTAACGGTGTAAAAAATTTACATTGACTATACGTGTGTATTAAATATTTTTTTTTAAGGAGTGTGAGTCAAATCTTTATTATACTGTATAGTTGGTCAAAGTATTATTTAGAAGGTTGAACTCTTTCAACCATCTAACTATATATTCTGTCAAAAATTTATGAGGGGTCAAATAAGCATGGATCTCCCTATATGTATCGCAAACTCGACTTACAATAGTCGAGTTGAATGTGTTTGAATATTGAGGATTAACCAAATCATGTTTTATTTGTTCTTGATTAGTGGTGTTTGTACACACGCAGTGATTAATTATCATCTAAATTCATATTCTACTAATACTAAACAAATGCAGGAGGAGCAAGTGGTATAGGCTTGGAGACAGCACGAGTCTTGGCTCTTCGAAAGGCGCATGTCATCATCGCCGCAAGAAACATGGAGTCTGCAAAGGAAGCTAAACAAATTATACTAGAGGACAACAAGTCTGCTCGAGTGGACATAATGAAGCTCGACCTTTGTTCAGTGAAGTCTGTTAGATCGTTTGTTGAAAACTTCCTCGCTCTCGATCTTCCTCTCAACATCTTAATGTATGTTGAAAACTATTTCAGAGTATTACTATGTCAAATTCTTACCACTGAGTTGATACGGCATAGACATAAATACATTATAGAAGTAAATTAAATATGTTTGTAGTGTATTCCAAATAGCTACTTAATAACATACAGTAATTGGCTTTTGATTTTCAGAAACAATGCTGGAGTTATGTTCTGCCCCTTCCAACTAACACAAGATGGAATTGAGATGCAGTTTGCAACAAATCATCTTGGTATGTACTATGTGGTGTTTCAACAATTATGCATATCATCATTTATTTATTTGGTTACATTAATTTGTGACACAAATTTTGTGTATTCTAGCTAATTGGTTGTATTTTTTTCAGGTCATTTCCTTTTGACAAACCTTCTACTTGAGAAGATGAAACAAACCGCAAAAGCCACTGGAATTGAGGGCAGGATCATAAATCTTTCATCAATTGCTCATACCTACACTTATGAAGAAGGCATTCGATTGGATAATATCAATGATCAAATTGGGTATGCATGTTAATTAATTTTTACACTTTAAATTCCAGTGACTACTACCTTTACAATAAAAATTTCCCAATATTTCCATAAATTTTTCAGTTACTCTGACAAGAAGGCTTATGGACAGTCCAAGTTAGCCAACATACTACATGCAAATGAGCTTTCTCGTCGCTTGAAGGTACTGCTGCTTCTATAATCTTTTTCATGTGACACAAAAAATAATACTATCAAAATATACTATTGGTGCATACAAATTGTATCAATGTAAACTATTGTAATAAATAAATCTTGGTGAGAGATATTAGTAATAATCATAATTAGTTGTTATGCCTACTAGTATTATGTTTTGGGGCCATGGGCACGTACCTAAGAGGAATTCATTCAATTTCAACTACCATCTAAACTCTACACTACACGTATGCATTGCTTACGTTCTGTTTTTTTTTGTTGTCTATGACAATATAGTTCAATAAACTTCTTTATTTGTTGTTCATAAGAAACTTTTTTTTGAGGAAGCCAAATTTGTGCATTAAATAACAACGTTTGATTTTTTGACATTGTTGTTTATAGGAAGAAGGTGTCAATATCACAGCCAACTCAGTACACCCAGGAGTAATAATGACTCCTCTTATGAGACACTCTTCTTTACTTATGAGTATGTCAATTATTCTCAAAACCGTACAACAAGAGTTAAAACAAAGAAAAACAGTTAGATATTCTTTTCCTTATTTATTATATGTCTAAGTCTAACACAATAATGCAATTTCAAACAGACTTCTTGAAGATGTTCACATTTTACATATGGAAGAATGTCCCACAGGTATTTATTTTAATTCCTCCTTATTCTACAATGTTTTATTTTAAATAAATGCACACAATAACCGCGACCTGAGCCGCGACATAATAGTGTATGAGGCCGGTGAAAGTTTGCAAATGTTACCATGACGGTTATTTAAAACTCTGATTCTAATATTTGATAAAAATGTTACATTTGAGAGTGCTCAAGATAAAGTTACTAACCATATTTGTTGTTTTAATTTTTGTTAATTTTAAAATTGTAGGGAGCTGCAACAACATGCTATGTTGCTCTTCATCCAAGCTTGAAAGGGGTAACTGGGAAGTACTTTTTGGATTGTAATGAGTTTCAACCAAGTGCATTTGCGTCAAATGGACTCTTAGGAAGAAAACTTTGGGATTTTAGCAACAAGTTGATCAATTCAATTTCAAATTCTTGA

Protein sequence

>MS.gene058995.t1

MVGIFSLVTGMAGPSGFGSSTTAEQVTEGIDASNLTAIITGGASGIGLETARVLALRKAHVIIAARNMESAKEAKQIILEDNKSARVDIMKLDLCSVKSVRSFVENFLALDLPLNILINNAGVMFCPFQLTQDGIEMQFATNHLGHFLLTNLLLEKMKQTAKATGIEGRIINLSSIAHTYTYEEGIRLDNINDQIGYSDKKAYGQSKLANILHANELSRRLKEEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFTFYIWKNVPQGAATTCYVALHPSLKGVTGKYFLDCNEFQPSAFASNGLLGRKLWDFSNKLINSISNS