AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053813


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053813.t1 MTR_5g056510 99.130 460 4 0 1 460 37 496 0.0 949
MS.gene053813.t1 MTR_1g110930 90.000 460 46 0 1 460 37 496 0.0 860
MS.gene053813.t1 MTR_4g070270 64.758 454 160 0 1 454 49 502 0.0 637
MS.gene053813.t1 MTR_1g041085 62.640 447 166 1 15 460 72 518 0.0 597
MS.gene053813.t1 MTR_1g076430 61.384 448 172 1 14 460 65 512 0.0 594
MS.gene053813.t1 MTR_2g054940 61.135 458 177 1 1 457 51 508 0.0 592
MS.gene053813.t1 MTR_7g118170 60.486 453 170 4 9 455 80 529 0.0 565
MS.gene053813.t1 MTR_4g113280 59.326 445 167 3 15 457 54 486 0.0 561
MS.gene053813.t1 MTR_7g081695 59.513 452 170 2 1 451 51 490 0.0 555
MS.gene053813.t1 MTR_3g105550 55.034 447 190 3 19 454 90 536 0.0 530
MS.gene053813.t1 MTR_2g007020 54.015 411 185 3 47 455 44 452 1.44e-168 482
MS.gene053813.t1 MTR_4g054630 52.214 429 201 3 30 455 40 467 9.29e-159 457
MS.gene053813.t1 MTR_4g054415 52.594 424 197 3 34 454 3 425 1.50e-158 456
MS.gene053813.t1 MTR_6g074880 52.125 447 208 4 13 456 27 470 1.45e-157 454
MS.gene053813.t1 MTR_2g436480 50.353 425 207 3 33 454 28 451 2.06e-157 454
MS.gene053813.t1 MTR_1g102290 52.334 407 192 2 48 452 78 484 1.58e-156 452
MS.gene053813.t1 MTR_2g013740 53.671 395 180 1 49 443 109 500 2.75e-154 447
MS.gene053813.t1 MTR_7g118160 52.696 408 148 4 52 456 56 421 4.12e-153 442
MS.gene053813.t1 MTR_3g072980 51.582 411 196 3 44 452 74 483 8.28e-151 438
MS.gene053813.t1 MTR_3g072940 51.582 411 196 3 44 452 74 483 8.94e-151 438
MS.gene053813.t1 MTR_6g032965 52.815 373 175 1 84 455 13 385 8.74e-147 424
MS.gene053813.t1 MTR_6g051440 51.117 403 194 3 52 452 81 482 1.67e-138 407
MS.gene053813.t1 MTR_1g115560 39.394 429 230 6 48 451 28 451 3.63e-109 332
MS.gene053813.t1 MTR_4g062270 40.094 424 242 6 34 451 16 433 7.72e-109 330
MS.gene053813.t1 MTR_2g096210 40.732 437 236 8 34 453 16 446 1.41e-107 327
MS.gene053813.t1 MTR_4g062190 39.269 438 235 8 34 451 16 442 3.03e-106 323
MS.gene053813.t1 MTR_4g062170 40.046 432 239 7 34 451 16 441 8.62e-105 320
MS.gene053813.t1 MTR_4g054260 49.805 257 108 4 201 454 87 325 1.15e-78 248
MS.gene053813.t1 MTR_4g053905 56.875 160 66 2 297 454 1 159 6.67e-59 191
MS.gene053813.t1 MTR_7g086260 69.355 62 17 1 292 351 22 83 4.27e-19 82.0
MS.gene053813.t1 MTR_4g054265 37.069 116 73 0 34 149 3 118 9.30e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053813.t1 AT1G68530 82.826 460 79 0 1 460 38 497 0.0 822
MS.gene053813.t1 AT1G25450 80.963 457 87 0 4 460 36 492 0.0 805
MS.gene053813.t1 AT1G19440 63.636 451 164 0 2 452 62 512 0.0 635
MS.gene053813.t1 AT2G16280 64.317 454 162 0 1 454 57 510 0.0 632
MS.gene053813.t1 AT4G34510 60.475 463 174 3 1 454 23 485 0.0 588
MS.gene053813.t1 AT2G26640 60.135 444 176 1 15 457 63 506 0.0 575
MS.gene053813.t1 AT1G04220 60.771 441 165 3 23 455 76 516 0.0 562
MS.gene053813.t1 AT5G43760 60.938 448 166 4 19 458 78 524 0.0 560
MS.gene053813.t1 AT1G01120 58.447 438 180 1 21 456 91 528 0.0 552
MS.gene053813.t1 AT1G68530 76.292 329 72 1 1 329 38 360 0.0 535
MS.gene053813.t1 AT2G15090 57.009 428 176 2 35 454 52 479 0.0 533
MS.gene053813.t1 AT4G34250 53.043 460 210 1 1 454 28 487 0.0 520
MS.gene053813.t1 AT4G34520 53.728 456 200 2 10 454 35 490 0.0 519
MS.gene053813.t1 AT2G26250 52.609 460 189 3 21 452 90 548 4.50e-179 512
MS.gene053813.t1 AT2G46720 53.623 414 189 1 44 454 52 465 5.11e-174 496
MS.gene053813.t1 AT3G10280 52.174 414 188 2 44 454 52 458 4.78e-166 476
MS.gene053813.t1 AT1G71160 49.652 431 213 3 23 452 19 446 1.54e-162 467
MS.gene053813.t1 AT5G49070 51.054 427 198 3 37 456 35 457 5.84e-153 443
MS.gene053813.t1 AT3G52160 45.301 415 195 3 30 443 66 449 6.59e-132 389
MS.gene053813.t1 AT3G52160 47.922 361 156 3 84 443 7 336 7.22e-123 361
MS.gene053813.t1 AT2G28630 42.080 423 223 8 48 451 27 446 2.41e-110 334
MS.gene053813.t1 AT2G28630 42.080 423 223 8 48 451 27 446 2.41e-110 334
MS.gene053813.t1 AT5G04530 40.777 412 229 6 50 451 31 437 9.09e-108 327
MS.gene053813.t1 AT1G07720 40.811 419 225 6 53 451 32 447 1.04e-106 325
MS.gene053813.t1 AT1G07720 40.811 419 225 6 53 451 75 490 1.67e-106 326
MS.gene053813.t1 AT5G49070 48.387 279 143 1 37 314 35 313 9.78e-89 273

Find 87 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACATCTTCTTCATCTTTA+TGG 0.117063 5.1:-44396678 MS.gene053813:CDS
CGTCCCTTTCGCTACTTTCA+TGG 0.215185 5.1:-44397640 MS.gene053813:CDS
TTCACTTCAAAAGGATCTTA+TGG 0.218445 5.1:-44396971 MS.gene053813:CDS
CGTCTTGCTTCTTCCATTGT+TGG 0.258187 5.1:+44397492 None:intergenic
GCTTCTTCCATTGTTGGTTT+AGG 0.276327 5.1:+44397498 None:intergenic
TGAAGAGAGGTGATAGAGTA+TGG 0.287194 5.1:-44396621 MS.gene053813:CDS
AGCATTAAGACACCTGTTAA+TGG 0.300750 5.1:-44396541 MS.gene053813:CDS
TGTTTGAAATCAGGAATATA+AGG 0.323168 5.1:+44396823 None:intergenic
TTTAGCCCGCGATCTTCTTC+AGG 0.324454 5.1:-44397253 MS.gene053813:CDS
GGTGGGATGTAATGGATTGC+TGG 0.333428 5.1:+44397519 None:intergenic
GAAGACAGAGAAGGTAAAGT+TGG 0.348142 5.1:-44396997 MS.gene053813:CDS
GAATGACGCTGCATCGATTC+GGG 0.353166 5.1:-44396702 MS.gene053813:CDS
ACAACAACTGCGTTTGAATT+CGG 0.360073 5.1:+44397225 None:intergenic
AGAGTATGGCAAATAGCTTT+TGG 0.363430 5.1:-44396607 MS.gene053813:CDS
ACCAAACTGTTTATTCAGAA+TGG 0.377309 5.1:-44397145 MS.gene053813:CDS
AAATCAAATATAACAACTAT+TGG 0.388103 5.1:-44396928 MS.gene053813:CDS
AACTCCTTCTTTGTCTGCTA+TGG 0.395630 5.1:-44397361 MS.gene053813:CDS
AGTTGGAATTTCACTTCAAA+AGG 0.400364 5.1:-44396980 MS.gene053813:CDS
TCTTCCCAAGGTCCATTAAC+AGG 0.401821 5.1:+44396529 None:intergenic
ATCGTTCGAGAATCCTCATT+TGG 0.403355 5.1:+44397571 None:intergenic
TCAAACGCTTGTTTGAAATC+AGG 0.404416 5.1:+44396814 None:intergenic
TCTTCCATTGTTGGTTTAGG+TGG 0.408011 5.1:+44397501 None:intergenic
CCCATTCTGAATAAACAGTT+TGG 0.412390 5.1:+44397144 None:intergenic
AGCTTCAACCTCTCCGGAAT+GGG 0.413606 5.1:-44397303 MS.gene053813:CDS
ATAAGAATGTCTATGTCCTT+AGG 0.415605 5.1:+44397408 None:intergenic
AGAATGACGCTGCATCGATT+CGG 0.416495 5.1:-44396703 MS.gene053813:CDS
GATACCTTGTTTGCGAAAAC+CGG 0.424265 5.1:-44397438 MS.gene053813:CDS
AAAGGGACGCGGCAAGTAAT+CGG 0.425547 5.1:+44397654 None:intergenic
TTGGTTTAGGTGGGATGTAA+TGG 0.427468 5.1:+44397511 None:intergenic
ATTCTCGAACGATCTGGTCT+TGG 0.430456 5.1:-44397561 MS.gene053813:CDS
CCAAACTGTTTATTCAGAAT+GGG 0.431991 5.1:-44397144 MS.gene053813:CDS
ATTTAGAGCTTAACAATCTC+AGG 0.432547 5.1:+44396478 None:intergenic
TTCATAGAACTACTACGTTT+AGG 0.436422 5.1:-44397828 MS.gene053813:CDS
CTTCCATTGTTGGTTTAGGT+GGG 0.436694 5.1:+44397502 None:intergenic
AAGAGATTGAGTATTTCATA+AGG 0.454494 5.1:+44397804 None:intergenic
TTGAACTATATTGAATCAAA+AGG 0.463579 5.1:-44396649 MS.gene053813:CDS
GACACCTGTTAATGGACCTT+GGG 0.463994 5.1:-44396533 MS.gene053813:CDS
ACAATCTCAGGAATATGAAC+AGG 0.469213 5.1:+44396490 None:intergenic
TTTGTATGTGATCAAATTGA+AGG 0.474408 5.1:+44397775 None:intergenic
AGAGATTGAGTATTTCATAA+GGG 0.479879 5.1:+44397805 None:intergenic
ACCCGCGCTACATCCCATTC+CGG 0.483459 5.1:+44397290 None:intergenic
ATGAGGATTCTCGAACGATC+TGG 0.486006 5.1:-44397567 MS.gene053813:CDS
GCTTGTTATCTTCTCATCCA+TGG 0.488002 5.1:-44397460 MS.gene053813:CDS
AGTAATCGGCGGTTTGAAGC+AGG 0.491235 5.1:+44397668 None:intergenic
AAGAGTAATTGTTCTGAAGC+AGG 0.493059 5.1:+44396892 None:intergenic
TATGTCCTTAGGTTTGAGTC+CGG 0.505098 5.1:+44397419 None:intergenic
AGACACCTGTTAATGGACCT+TGG 0.510300 5.1:-44396534 MS.gene053813:CDS
GAGCTTCAACCTCTCCGGAA+TGG 0.512246 5.1:-44397304 MS.gene053813:CDS
TCCGGAATGGGATGTAGCGC+GGG 0.514072 5.1:-44397291 MS.gene053813:CDS
CTTTAACATGAAGTATATTG+TGG 0.524324 5.1:+44397719 None:intergenic
AAGGATCTTATGGCTATAGC+AGG 0.535171 5.1:-44396961 MS.gene053813:CDS
CTCCGGAATGGGATGTAGCG+CGG 0.535668 5.1:-44397292 MS.gene053813:CDS
ATTAAGAGCTTCAACCTCTC+CGG 0.542491 5.1:-44397309 MS.gene053813:CDS
TTTCGCAAACAAGGTATCCA+TGG 0.546419 5.1:+44397443 None:intergenic
AAGAAGGAGTTGGAGAAAAG+AGG 0.546500 5.1:+44397373 None:intergenic
ATAGCAGACAAAGAAGGAGT+TGG 0.559010 5.1:+44397363 None:intergenic
CATCCCACCTAAACCAACAA+TGG 0.566152 5.1:-44397505 MS.gene053813:CDS
AAGATCGCGGGCTAAATCGA+TGG 0.572509 5.1:+44397260 None:intergenic
TCAAAAGGAAGGATGAAGAG+AGG 0.574451 5.1:-44396634 MS.gene053813:CDS
ATTACTCCAAACTATTACCA+AGG 0.582645 5.1:-44397189 MS.gene053813:CDS
GTTCCATGAAAGTAGCGAAA+GGG 0.584347 5.1:+44397637 None:intergenic
TTGTATGTGATCAAATTGAA+GGG 0.587629 5.1:+44397776 None:intergenic
TGAAAGTAGCGAAAGGGACG+CGG 0.588590 5.1:+44397643 None:intergenic
TTCGAAGAAGAAGACAGAGA+AGG 0.591426 5.1:-44397006 MS.gene053813:CDS
ACTATATTGAATCAAAAGGA+AGG 0.597855 5.1:-44396645 MS.gene053813:CDS
CTTCTGTAACTCATCGATCA+CGG 0.605553 5.1:+44396762 None:intergenic
ATCACCATAGCAGACAAAGA+AGG 0.610156 5.1:+44397357 None:intergenic
ATAAACCTGAAGAAGATCGC+GGG 0.612944 5.1:+44397248 None:intergenic
AACTGTTTATTCAGAATGGG+TGG 0.613269 5.1:-44397141 MS.gene053813:CDS
GGATGAGAAGATAACAAGCT+CGG 0.613593 5.1:+44397464 None:intergenic
TGTTCCATGAAAGTAGCGAA+AGG 0.619184 5.1:+44397636 None:intergenic
TTATGAGAAAACAAGAGCAA+AGG 0.623278 5.1:+44397751 None:intergenic
CTTCTTCTTCGAAAACGCAA+CGG 0.633833 5.1:+44397016 None:intergenic
GAAAACCGGACTCAAACCTA+AGG 0.634039 5.1:-44397424 MS.gene053813:CDS
TGAAGCAGGCATAATCGACT+AGG 0.636758 5.1:+44397682 None:intergenic
TCTGAAGCAGGTAGAACAAG+AGG 0.638656 5.1:+44396904 None:intergenic
CGATCAATGCAATCTTCCCA+AGG 0.642968 5.1:+44396517 None:intergenic
AAAGTGTCGAGTTCCAAATG+AGG 0.646121 5.1:-44397584 MS.gene053813:CDS
CGCTACATCCCATTCCGGAG+AGG 0.648049 5.1:+44397295 None:intergenic
CAAGTTGTTAGAACTCACAA+AGG 0.665486 5.1:-44397057 MS.gene053813:CDS
GCTATCTGCTGAACACGTCG+AGG 0.667644 5.1:-44396731 MS.gene053813:CDS
GATAAACCTGAAGAAGATCG+CGG 0.670461 5.1:+44397247 None:intergenic
TCGACTAGGTAGATTGCGCG+TGG 0.676158 5.1:+44397696 None:intergenic
GTTGTTAGAACTCACAAAGG+AGG 0.692073 5.1:-44397054 MS.gene053813:CDS
GGGATGTAATGGATTGCTGG+TGG 0.704587 5.1:+44397522 None:intergenic
TTAAATGCAACAGTGCTGTG+TGG 0.709414 5.1:-44396576 MS.gene053813:CDS
GGGACGCGGCAAGTAATCGG+CGG 0.714953 5.1:+44397657 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCAAATATAACAACTAT+TGG - chr5.1:44397392-44397411 MS.gene053813:CDS 15.0%
!! TTGAACTATATTGAATCAAA+AGG - chr5.1:44397671-44397690 MS.gene053813:CDS 20.0%
! AAGAGATTGAGTATTTCATA+AGG + chr5.1:44396519-44396538 None:intergenic 25.0%
! ACTATATTGAATCAAAAGGA+AGG - chr5.1:44397675-44397694 MS.gene053813:CDS 25.0%
! AGAGATTGAGTATTTCATAA+GGG + chr5.1:44396518-44396537 None:intergenic 25.0%
! CTTTAACATGAAGTATATTG+TGG + chr5.1:44396604-44396623 None:intergenic 25.0%
! TTGTATGTGATCAAATTGAA+GGG + chr5.1:44396547-44396566 None:intergenic 25.0%
! TTTGTATGTGATCAAATTGA+AGG + chr5.1:44396548-44396567 None:intergenic 25.0%
!! TGTTTGAAATCAGGAATATA+AGG + chr5.1:44397500-44397519 None:intergenic 25.0%
ACACATCTTCTTCATCTTTA+TGG - chr5.1:44397642-44397661 MS.gene053813:CDS 30.0%
ACCAAACTGTTTATTCAGAA+TGG - chr5.1:44397175-44397194 MS.gene053813:CDS 30.0%
AGTTGGAATTTCACTTCAAA+AGG - chr5.1:44397340-44397359 MS.gene053813:CDS 30.0%
ATAAGAATGTCTATGTCCTT+AGG + chr5.1:44396915-44396934 None:intergenic 30.0%
ATTACTCCAAACTATTACCA+AGG - chr5.1:44397131-44397150 MS.gene053813:CDS 30.0%
CCAAACTGTTTATTCAGAAT+GGG - chr5.1:44397176-44397195 MS.gene053813:CDS 30.0%
TTATGAGAAAACAAGAGCAA+AGG + chr5.1:44396572-44396591 None:intergenic 30.0%
TTCACTTCAAAAGGATCTTA+TGG - chr5.1:44397349-44397368 MS.gene053813:CDS 30.0%
TTCATAGAACTACTACGTTT+AGG - chr5.1:44396492-44396511 MS.gene053813:CDS 30.0%
! GGAATATAAGGCTTCATTTT+AGG + chr5.1:44397488-44397507 None:intergenic 30.0%
!! TCTTTTCCTTGGTAATAGTT+TGG + chr5.1:44397140-44397159 None:intergenic 30.0%
AACTGTTTATTCAGAATGGG+TGG - chr5.1:44397179-44397198 MS.gene053813:CDS 35.0%
ACAACAACTGCGTTTGAATT+CGG + chr5.1:44397098-44397117 None:intergenic 35.0%
ACAATCTCAGGAATATGAAC+AGG + chr5.1:44397833-44397852 None:intergenic 35.0%
AGCATTAAGACACCTGTTAA+TGG - chr5.1:44397779-44397798 MS.gene053813:CDS 35.0%
CAAGTTGTTAGAACTCACAA+AGG - chr5.1:44397263-44397282 MS.gene053813:CDS 35.0%
CCCATTCTGAATAAACAGTT+TGG + chr5.1:44397179-44397198 None:intergenic 35.0%
! AGAGTATGGCAAATAGCTTT+TGG - chr5.1:44397713-44397732 MS.gene053813:CDS 35.0%
! CATTTTTGTATTCATGCTGG+TGG - chr5.1:44397530-44397549 MS.gene053813:CDS 35.0%
! CTCTTTCTTTTCACACTCAT+TGG - chr5.1:44397446-44397465 MS.gene053813:CDS 35.0%
! GAGCATTTTTGTATTCATGC+TGG - chr5.1:44397527-44397546 MS.gene053813:CDS 35.0%
! TCAAACGCTTGTTTGAAATC+AGG + chr5.1:44397509-44397528 None:intergenic 35.0%
!! AAGAGTAATTGTTCTGAAGC+AGG + chr5.1:44397431-44397450 None:intergenic 35.0%
!! ATTTGGAACTCGACACTTTT+CGG + chr5.1:44396735-44396754 None:intergenic 35.0%
AACTCCTTCTTTGTCTGCTA+TGG - chr5.1:44396959-44396978 MS.gene053813:CDS 40.0%
AAGAAGGAGTTGGAGAAAAG+AGG + chr5.1:44396950-44396969 None:intergenic 40.0%
AAGGATCTTATGGCTATAGC+AGG - chr5.1:44397359-44397378 MS.gene053813:CDS 40.0%
ATAAACCTGAAGAAGATCGC+GGG + chr5.1:44397075-44397094 None:intergenic 40.0%
ATAGCAGACAAAGAAGGAGT+TGG + chr5.1:44396960-44396979 None:intergenic 40.0%
ATCACCATAGCAGACAAAGA+AGG + chr5.1:44396966-44396985 None:intergenic 40.0%
ATCGTTCGAGAATCCTCATT+TGG + chr5.1:44396752-44396771 None:intergenic 40.0%
ATTAAGAGCTTCAACCTCTC+CGG - chr5.1:44397011-44397030 MS.gene053813:CDS 40.0%
CTTCTGTAACTCATCGATCA+CGG + chr5.1:44397561-44397580 None:intergenic 40.0%
CTTCTTCTTCGAAAACGCAA+CGG + chr5.1:44397307-44397326 None:intergenic 40.0%
GAAGACAGAGAAGGTAAAGT+TGG - chr5.1:44397323-44397342 MS.gene053813:CDS 40.0%
GATAAACCTGAAGAAGATCG+CGG + chr5.1:44397076-44397095 None:intergenic 40.0%
GGATGAGAAGATAACAAGCT+CGG + chr5.1:44396859-44396878 None:intergenic 40.0%
GTTCCATGAAAGTAGCGAAA+GGG + chr5.1:44396686-44396705 None:intergenic 40.0%
GTTGTTAGAACTCACAAAGG+AGG - chr5.1:44397266-44397285 MS.gene053813:CDS 40.0%
TATGTCCTTAGGTTTGAGTC+CGG + chr5.1:44396904-44396923 None:intergenic 40.0%
TCAAAAGGAAGGATGAAGAG+AGG - chr5.1:44397686-44397705 MS.gene053813:CDS 40.0%
TGAAGAGAGGTGATAGAGTA+TGG - chr5.1:44397699-44397718 MS.gene053813:CDS 40.0%
TGTTCCATGAAAGTAGCGAA+AGG + chr5.1:44396687-44396706 None:intergenic 40.0%
TTAAATGCAACAGTGCTGTG+TGG - chr5.1:44397744-44397763 MS.gene053813:CDS 40.0%
TTCGAAGAAGAAGACAGAGA+AGG - chr5.1:44397314-44397333 MS.gene053813:CDS 40.0%
TTGGTTTAGGTGGGATGTAA+TGG + chr5.1:44396812-44396831 None:intergenic 40.0%
! GATACCTTGTTTGCGAAAAC+CGG - chr5.1:44396882-44396901 MS.gene053813:CDS 40.0%
! GCATTGCTCTTTCTTTTCCT+TGG + chr5.1:44397151-44397170 None:intergenic 40.0%
! TTTCGCAAACAAGGTATCCA+TGG + chr5.1:44396880-44396899 None:intergenic 40.0%
!! AAAGTGTCGAGTTCCAAATG+AGG - chr5.1:44396736-44396755 MS.gene053813:CDS 40.0%
!! CTTCCATTGTTGGTTTAGGT+GGG + chr5.1:44396821-44396840 None:intergenic 40.0%
!! GCTTCTTCCATTGTTGGTTT+AGG + chr5.1:44396825-44396844 None:intergenic 40.0%
!! GCTTGTTATCTTCTCATCCA+TGG - chr5.1:44396860-44396879 MS.gene053813:CDS 40.0%
!! TCTTCCATTGTTGGTTTAGG+TGG + chr5.1:44396822-44396841 None:intergenic 40.0%
!! TGGCAAATAGCTTTTGGAAG+TGG - chr5.1:44397719-44397738 MS.gene053813:CDS 40.0%
!! TTTGGAACTCGACACTTTTC+GGG + chr5.1:44396734-44396753 None:intergenic 40.0%
ATGAGGATTCTCGAACGATC+TGG - chr5.1:44396753-44396772 MS.gene053813:CDS 45.0%
ATTCTCGAACGATCTGGTCT+TGG - chr5.1:44396759-44396778 MS.gene053813:CDS 45.0%
CATCCCACCTAAACCAACAA+TGG - chr5.1:44396815-44396834 MS.gene053813:CDS 45.0%
CGATCAATGCAATCTTCCCA+AGG + chr5.1:44397806-44397825 None:intergenic 45.0%
CGTCTTGCTTCTTCCATTGT+TGG + chr5.1:44396831-44396850 None:intergenic 45.0%
GAAAACCGGACTCAAACCTA+AGG - chr5.1:44396896-44396915 MS.gene053813:CDS 45.0%
TCTTCCCAAGGTCCATTAAC+AGG + chr5.1:44397794-44397813 None:intergenic 45.0%
TGAAGCAGGCATAATCGACT+AGG + chr5.1:44396641-44396660 None:intergenic 45.0%
! AGACACCTGTTAATGGACCT+TGG - chr5.1:44397786-44397805 MS.gene053813:CDS 45.0%
! GACACCTGTTAATGGACCTT+GGG - chr5.1:44397787-44397806 MS.gene053813:CDS 45.0%
! TCTGAAGCAGGTAGAACAAG+AGG + chr5.1:44397419-44397438 None:intergenic 45.0%
!! AGAATGACGCTGCATCGATT+CGG - chr5.1:44397617-44397636 MS.gene053813:CDS 45.0%
!!! CACTTTTCGGGTTGTTCTTG+AGG + chr5.1:44396722-44396741 None:intergenic 45.0%
AAAGGGACGCGGCAAGTAAT+CGG + chr5.1:44396669-44396688 None:intergenic 50.0%
AGCTTCAACCTCTCCGGAAT+GGG - chr5.1:44397017-44397036 MS.gene053813:CDS 50.0%
TGAAAGTAGCGAAAGGGACG+CGG + chr5.1:44396680-44396699 None:intergenic 50.0%
TTTAGCCCGCGATCTTCTTC+AGG - chr5.1:44397067-44397086 MS.gene053813:CDS 50.0%
! AAGATCGCGGGCTAAATCGA+TGG + chr5.1:44397063-44397082 None:intergenic 50.0%
! AGTAATCGGCGGTTTGAAGC+AGG + chr5.1:44396655-44396674 None:intergenic 50.0%
! CGTCCCTTTCGCTACTTTCA+TGG - chr5.1:44396680-44396699 MS.gene053813:CDS 50.0%
! GAGTCCGGTTTTCGCAAACA+AGG + chr5.1:44396889-44396908 None:intergenic 50.0%
!! GAATGACGCTGCATCGATTC+GGG - chr5.1:44397618-44397637 MS.gene053813:CDS 50.0%
!! GGGATGTAATGGATTGCTGG+TGG + chr5.1:44396801-44396820 None:intergenic 50.0%
!! GGTGGGATGTAATGGATTGC+TGG + chr5.1:44396804-44396823 None:intergenic 50.0%
GAGCTTCAACCTCTCCGGAA+TGG - chr5.1:44397016-44397035 MS.gene053813:CDS 55.0%
GCTATCTGCTGAACACGTCG+AGG - chr5.1:44397589-44397608 MS.gene053813:CDS 55.0%
TCGACTAGGTAGATTGCGCG+TGG + chr5.1:44396627-44396646 None:intergenic 55.0%
ACCCGCGCTACATCCCATTC+CGG + chr5.1:44397033-44397052 None:intergenic 60.0%
CGCTACATCCCATTCCGGAG+AGG + chr5.1:44397028-44397047 None:intergenic 60.0%
CTCCGGAATGGGATGTAGCG+CGG - chr5.1:44397028-44397047 MS.gene053813:CDS 60.0%
TCCGGAATGGGATGTAGCGC+GGG - chr5.1:44397029-44397048 MS.gene053813:CDS 60.0%
GGGACGCGGCAAGTAATCGG+CGG + chr5.1:44396666-44396685 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 44396480 44397862 44396480 ID=MS.gene053813
chr5.1 mRNA 44396480 44397862 44396480 ID=MS.gene053813.t1;Parent=MS.gene053813
chr5.1 exon 44396480 44397862 44396480 ID=MS.gene053813.t1.exon1;Parent=MS.gene053813.t1
chr5.1 CDS 44396480 44397862 44396480 ID=cds.MS.gene053813.t1;Parent=MS.gene053813.t1
Gene Sequence

>MS.gene053813

ATGATTTGCATCTTCATAGAACTACTACGTTTAGGCCCTTATGAAATACTCAATCTCTTCAAGTCCCTTCAATTTGATCACATACAAATCCTTTGCTCTTGTTTTCTCATAATCTTCATATCCACAATATACTTCATGTTAAAGCCACGCGCAATCTACCTAGTCGATTATGCCTGCTTCAAACCGCCGATTACTTGCCGCGTCCCTTTCGCTACTTTCATGGAACATTCAAGACTAATCCTCAAGAACAACCCGAAAAGTGTCGAGTTCCAAATGAGGATTCTCGAACGATCTGGTCTTGGAGAAGAAACATGTTTGCCACCAGCAATCCATTACATCCCACCTAAACCAACAATGGAAGAAGCAAGACGCGAAGCCGAGCTTGTTATCTTCTCATCCATGGATACCTTGTTTGCGAAAACCGGACTCAAACCTAAGGACATAGACATTCTTATAGTCAATTGCAGCCTCTTTTCTCCAACTCCTTCTTTGTCTGCTATGGTGATCAACAAATACAAACTTAGAAGCAACATTAAGAGCTTCAACCTCTCCGGAATGGGATGTAGCGCGGGTTTGATCTCCATCGATTTAGCCCGCGATCTTCTTCAGGTTTATCCGAATTCAAACGCAGTTGTTGTGAGCACAGAAATCATTACTCCAAACTATTACCAAGGAAAAGAAAGAGCAATGCTTTTACCAAACTGTTTATTCAGAATGGGTGGTGCTGCTATTCTTTTATCAAACAAAAAAACAGAACACAAAAGAGCAAAATATAGATTGATGCAAGTTGTTAGAACTCACAAAGGAGGTGATGATAAAGCTTACCGTTGCGTTTTCGAAGAAGAAGACAGAGAAGGTAAAGTTGGAATTTCACTTCAAAAGGATCTTATGGCTATAGCAGGAGAAGCATTGAAATCAAATATAACAACTATTGGTCCTCTTGTTCTACCTGCTTCAGAACAATTACTCTTTCTTTTCACACTCATTGGAAAGAAAATCTTCAATCCTAAAATGAAGCCTTATATTCCTGATTTCAAACAAGCGTTTGAGCATTTTTGTATTCATGCTGGTGGACGTGCCGTGATCGATGAGTTACAGAAGAATCTTCAGCTATCTGCTGAACACGTCGAGGCTTCAAGAATGACGCTGCATCGATTCGGGAACACATCTTCTTCATCTTTATGGTATGAATTGAACTATATTGAATCAAAAGGAAGGATGAAGAGAGGTGATAGAGTATGGCAAATAGCTTTTGGAAGTGGATTTAAATGCAACAGTGCTGTGTGGAAATGTAATAGAAGCATTAAGACACCTGTTAATGGACCTTGGGAAGATTGCATTGATCGCTATCCTGTTCATATTCCTGAGATTGTTAAGCTCTAA

Protein sequence

>MS.gene053813.t1

MICIFIELLRLGPYEILNLFKSLQFDHIQILCSCFLIIFISTIYFMLKPRAIYLVDYACFKPPITCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPKPTMEEARREAELVIFSSMDTLFAKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVYPNSNAVVVSTEIITPNYYQGKERAMLLPNCLFRMGGAAILLSNKKTEHKRAKYRLMQVVRTHKGGDDKAYRCVFEEEDREGKVGISLQKDLMAIAGEALKSNITTIGPLVLPASEQLLFLFTLIGKKIFNPKMKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKRGDRVWQIAFGSGFKCNSAVWKCNRSIKTPVNGPWEDCIDRYPVHIPEIVKL